Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013905
(1009 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533427.2| PREDICTED: similar to Protein C6orf115 [Canis f... 197 1e-50
>ref|XP_533427.2| PREDICTED: similar to Protein C6orf115 [Canis familiaris].
Length = 245
Score = 197 bits (502), Expect = 1e-50
Identities = 112/154 (72%), Positives = 117/154 (75%), Gaps = 2/154 (1%)
Frame = +2
Query: 134 ACSWECGRPHS*ALKLSXXXXXXXXXXXAFLFASVTSFLSLFLPSSW--RR*PVRTCAAP 307
AC WECGRP S ALKL AFLF ++ FL LP P RT AAP
Sbjct: 96 ACPWECGRPLSGALKL---LPPTPSSTPAFLFC-ISHFLPQPLPPRCVEEDDPARTHAAP 151
Query: 308 VFP*KRKGGEEAAMNVDHEVNLLVEEIHRLGSKNADGKLSVKFGVLFRDDKCANLFEALV 487
FP K + G +AAMNVDHEVNLLVEEIHRLGSKNADGKLSVKFGVLFRDDKCANLFEALV
Sbjct: 152 AFPRKVRRGGKAAMNVDHEVNLLVEEIHRLGSKNADGKLSVKFGVLFRDDKCANLFEALV 211
Query: 488 GTLKAAKRRKIITYPGELLLQGVHDDVDIILLQD 589
GTLKAAKRRKI+TY GELLLQGVHDDVDIILLQD
Sbjct: 212 GTLKAAKRRKIVTYTGELLLQGVHDDVDIILLQD 245
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,386,108
Number of extensions: 992240
Number of successful extensions: 4007
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3995
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 233
Effective length of database: 15,440,896
Effective search space: 3597728768
Effective search space used: 3597728768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013905
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013905
(1009 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001160033.1| hypothetical protein LOC505914 [Bos taurus]. 155 5e-38
>ref|NP_001160033.1| hypothetical protein LOC505914 [Bos taurus].
Length = 81
Score = 155 bits (392), Expect = 5e-38
Identities = 78/81 (96%), Positives = 79/81 (97%)
Frame = +2
Query: 347 MNVDHEVNLLVEEIHRLGSKNADGKLSVKFGVLFRDDKCANLFEALVGTLKAAKRRKIIT 526
MNVDHEV LLVEEIHRLGSKNADGKLSVKFGVLF+DDKCANLFEALVGTLKAAKRRKIIT
Sbjct: 1 MNVDHEVKLLVEEIHRLGSKNADGKLSVKFGVLFQDDKCANLFEALVGTLKAAKRRKIIT 60
Query: 527 YPGELLLQGVHDDVDIILLQD 589
Y GELLLQGVHDDVDIILLQD
Sbjct: 61 YSGELLLQGVHDDVDIILLQD 81
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,850,363
Number of extensions: 977340
Number of successful extensions: 3929
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3908
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 233
Effective length of database: 14,273,310
Effective search space: 3325681230
Effective search space used: 3325681230
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013905
(1009 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003121220.1| PREDICTED: costars family protein C6orf115-l... 165 3e-41
Alignment gi|XP_003353244.1| PREDICTED: costars family protein C6orf115-l... 162 3e-40
Alignment gi|XP_003353243.1| PREDICTED: costars family protein C6orf115-l... 162 3e-40
>ref|XP_003121220.1| PREDICTED: costars family protein C6orf115-like isoform 2 [Sus
scrofa].
Length = 86
Score = 165 bits (418), Expect = 3e-41
Identities = 83/83 (100%), Positives = 83/83 (100%)
Frame = +2
Query: 341 AAMNVDHEVNLLVEEIHRLGSKNADGKLSVKFGVLFRDDKCANLFEALVGTLKAAKRRKI 520
AAMNVDHEVNLLVEEIHRLGSKNADGKLSVKFGVLFRDDKCANLFEALVGTLKAAKRRKI
Sbjct: 4 AAMNVDHEVNLLVEEIHRLGSKNADGKLSVKFGVLFRDDKCANLFEALVGTLKAAKRRKI 63
Query: 521 ITYPGELLLQGVHDDVDIILLQD 589
ITYPGELLLQGVHDDVDIILLQD
Sbjct: 64 ITYPGELLLQGVHDDVDIILLQD 86
>ref|XP_003353244.1| PREDICTED: costars family protein C6orf115-like [Sus scrofa].
Length = 81
Score = 162 bits (410), Expect = 3e-40
Identities = 81/81 (100%), Positives = 81/81 (100%)
Frame = +2
Query: 347 MNVDHEVNLLVEEIHRLGSKNADGKLSVKFGVLFRDDKCANLFEALVGTLKAAKRRKIIT 526
MNVDHEVNLLVEEIHRLGSKNADGKLSVKFGVLFRDDKCANLFEALVGTLKAAKRRKIIT
Sbjct: 1 MNVDHEVNLLVEEIHRLGSKNADGKLSVKFGVLFRDDKCANLFEALVGTLKAAKRRKIIT 60
Query: 527 YPGELLLQGVHDDVDIILLQD 589
YPGELLLQGVHDDVDIILLQD
Sbjct: 61 YPGELLLQGVHDDVDIILLQD 81
>ref|XP_003353243.1| PREDICTED: costars family protein C6orf115-like [Sus scrofa].
Length = 81
Score = 162 bits (410), Expect = 3e-40
Identities = 81/81 (100%), Positives = 81/81 (100%)
Frame = +2
Query: 347 MNVDHEVNLLVEEIHRLGSKNADGKLSVKFGVLFRDDKCANLFEALVGTLKAAKRRKIIT 526
MNVDHEVNLLVEEIHRLGSKNADGKLSVKFGVLFRDDKCANLFEALVGTLKAAKRRKIIT
Sbjct: 1 MNVDHEVNLLVEEIHRLGSKNADGKLSVKFGVLFRDDKCANLFEALVGTLKAAKRRKIIT 60
Query: 527 YPGELLLQGVHDDVDIILLQD 589
YPGELLLQGVHDDVDIILLQD
Sbjct: 61 YPGELLLQGVHDDVDIILLQD 81
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,878,418
Number of extensions: 655699
Number of successful extensions: 2816
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2763
Number of HSP's successfully gapped: 3
Length of query: 336
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 237
Effective length of database: 8,879,129
Effective search space: 2104353573
Effective search space used: 2104353573
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013905
(1009 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_891864.1| PREDICTED: UPF0727 protein C6orf115 homolog [Mu... 154 1e-37
Alignment gi|XP_921857.1| PREDICTED: UPF0727 protein C6orf115 homolog [Mu... 154 1e-37
Alignment gi|NP_082716.1| hypothetical protein LOC73112 [Mus musculus]. 153 2e-37
>ref|XP_891864.1| PREDICTED: UPF0727 protein C6orf115 homolog [Mus musculus].
Length = 130
Score = 154 bits (389), Expect = 1e-37
Identities = 76/90 (84%), Positives = 86/90 (95%)
Frame = +2
Query: 320 KRKGGEEAAMNVDHEVNLLVEEIHRLGSKNADGKLSVKFGVLFRDDKCANLFEALVGTLK 499
K++ E+AMNV+HEVNLLVEEI+RLGSKNADGKLSVKFGVLF++D+CANLFEALVGTLK
Sbjct: 41 KKEAIGESAMNVEHEVNLLVEEINRLGSKNADGKLSVKFGVLFQNDRCANLFEALVGTLK 100
Query: 500 AAKRRKIITYPGELLLQGVHDDVDIILLQD 589
AAKRRKI+TY GELLLQGVHDDVDI+LLQD
Sbjct: 101 AAKRRKIVTYTGELLLQGVHDDVDIVLLQD 130
>ref|XP_921857.1| PREDICTED: UPF0727 protein C6orf115 homolog [Mus musculus].
Length = 130
Score = 154 bits (389), Expect = 1e-37
Identities = 76/90 (84%), Positives = 86/90 (95%)
Frame = +2
Query: 320 KRKGGEEAAMNVDHEVNLLVEEIHRLGSKNADGKLSVKFGVLFRDDKCANLFEALVGTLK 499
K++ E+AMNV+HEVNLLVEEI+RLGSKNADGKLSVKFGVLF++D+CANLFEALVGTLK
Sbjct: 41 KKEAIGESAMNVEHEVNLLVEEINRLGSKNADGKLSVKFGVLFQNDRCANLFEALVGTLK 100
Query: 500 AAKRRKIITYPGELLLQGVHDDVDIILLQD 589
AAKRRKI+TY GELLLQGVHDDVDI+LLQD
Sbjct: 101 AAKRRKIVTYTGELLLQGVHDDVDIVLLQD 130
>ref|NP_082716.1| hypothetical protein LOC73112 [Mus musculus].
Length = 81
Score = 153 bits (386), Expect = 2e-37
Identities = 74/81 (91%), Positives = 80/81 (98%)
Frame = +2
Query: 347 MNVDHEVNLLVEEIHRLGSKNADGKLSVKFGVLFRDDKCANLFEALVGTLKAAKRRKIIT 526
MNV+HEVNLLVEEIHRLGS+NADGKLSVKFGVLF+DD+CANLFEALVGTLKAAKRRKI+T
Sbjct: 1 MNVEHEVNLLVEEIHRLGSRNADGKLSVKFGVLFQDDRCANLFEALVGTLKAAKRRKIVT 60
Query: 527 YPGELLLQGVHDDVDIILLQD 589
Y GELLLQGVHDDVDI+LLQD
Sbjct: 61 YAGELLLQGVHDDVDIVLLQD 81
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,068,746
Number of extensions: 822670
Number of successful extensions: 3261
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3233
Number of HSP's successfully gapped: 3
Length of query: 336
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 234
Effective length of database: 12,553,887
Effective search space: 2937609558
Effective search space used: 2937609558
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013905
(1009 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_067066.1| hypothetical protein LOC58527 [Homo sapiens]. 162 6e-40
>ref|NP_067066.1| hypothetical protein LOC58527 [Homo sapiens].
Length = 81
Score = 162 bits (409), Expect = 6e-40
Identities = 80/81 (98%), Positives = 81/81 (100%)
Frame = +2
Query: 347 MNVDHEVNLLVEEIHRLGSKNADGKLSVKFGVLFRDDKCANLFEALVGTLKAAKRRKIIT 526
MNVDHEVNLLVEEIHRLGSKNADGKLSVKFGVLFRDDKCANLFEALVGTLKAAKRRKI+T
Sbjct: 1 MNVDHEVNLLVEEIHRLGSKNADGKLSVKFGVLFRDDKCANLFEALVGTLKAAKRRKIVT 60
Query: 527 YPGELLLQGVHDDVDIILLQD 589
YPGELLLQGVHDDVDIILLQD
Sbjct: 61 YPGELLLQGVHDDVDIILLQD 81
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,675,372
Number of extensions: 975280
Number of successful extensions: 3897
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3867
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 233
Effective length of database: 14,901,872
Effective search space: 3472136176
Effective search space used: 3472136176
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013905
(1009 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 1140 0.0
Sscrofa_Chr03 676 0.0
>Sscrofa_Chr01
|| Length = 315321322
Score = 1140 bits (575), Expect = 0.0
Identities = 575/575 (100%)
Strand = Plus / Minus
Query: 408 atgccgatggaaaattaagtgtgaaatttggggtcctattccgagatgacaaatgtgcca 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28571017 atgccgatggaaaattaagtgtgaaatttggggtcctattccgagatgacaaatgtgcca 28570958
Query: 468 acctctttgaagcattggtaggaactctcaaagctgcgaaacgaaggaagatcattacat 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28570957 acctctttgaagcattggtaggaactctcaaagctgcgaaacgaaggaagatcattacat 28570898
Query: 528 acccaggagagctacttttgcaaggtgttcatgatgatgttgacattatattgctgcaag 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28570897 acccaggagagctacttttgcaaggtgttcatgatgatgttgacattatattgctgcaag 28570838
Query: 588 attaatgtggtttgcatagctttgtttattggtttttgtttgtttctgctaaactggaat 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28570837 attaatgtggtttgcatagctttgtttattggtttttgtttgtttctgctaaactggaat 28570778
Query: 648 attatgtcaaaggacaaacacacgagcatacttagtgtatttttgtagaactttgtaaca 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28570777 attatgtcaaaggacaaacacacgagcatacttagtgtatttttgtagaactttgtaaca 28570718
Query: 708 aaaggagactcattttagaagtctgtccttttttatatcttgaaagcaatcttatgtatt 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28570717 aaaggagactcattttagaagtctgtccttttttatatcttgaaagcaatcttatgtatt 28570658
Query: 768 acactgtaagacaaacaaaacctattctttttctcaggaatctggttgggaaatgtaggc 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28570657 acactgtaagacaaacaaaacctattctttttctcaggaatctggttgggaaatgtaggc 28570598
Query: 828 agtgaggcttttttggtgcaggtacaagagtgtttcataaatcattcttagacaatttct 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28570597 agtgaggcttttttggtgcaggtacaagagtgtttcataaatcattcttagacaatttct 28570538
Query: 888 acagatacttgacattctgtgaaatcacgaagcaaacttgaagaccagctcccacaagga 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28570537 acagatacttgacattctgtgaaatcacgaagcaaacttgaagaccagctcccacaagga 28570478
Query: 948 atataacgtttatgtaataaaaacatggaactctc 982
|||||||||||||||||||||||||||||||||||
Sbjct: 28570477 atataacgtttatgtaataaaaacatggaactctc 28570443
Score = 539 bits (272), Expect = e-150
Identities = 320/341 (93%), Gaps = 20/341 (5%)
Strand = Plus / Minus
Query: 1 tcagatgcgaggggtgtagaggaagggtggcggttcttgaagccctgggtgcgtttagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28585761 tcagatgcgaggggtgtagaggaagggtggcggttcttgaagccctgggtgcgtttagaa 28585702
Query: 61 gcctcccggcgctccaccacctgtctggagtcagcccccttctcgggcgtctctcggagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28585701 gcctcccggcgctccaccacctgtctggagtcagcccccttctcgggcgtctctcggagt 28585642
Query: 121 ttcctccccataggcttgttcctgggagtgtgggcggccccattcctgagcgctgaaact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28585641 ttcctccccataggcttgttcctgggagtgtgggcggccccattcctgagcgctgaaact 28585582
Query: 181 ctctccccccactctccaccccccgccctgcacaccagcctttctatttgcctcagtcac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28585581 ctctccccccactctccaccccccgccctgcacaccagcctttctatttgcctcagtcac 28585522
Query: 241 ttccttcctcagcctcttcctccccagttcgtggagaagataaccagtccgcacctgcgc 300
||||||||||||||||||||||||||||| |||||||||||
Sbjct: 28585521 ttccttcctcagcctcttcctccccagtt--------------------cgcacctgcgc 28585482
Query: 301 ggctccagtttttccttagaaaagaaaaggaggtgaagagg 341
| |||||||||||||||||||||||||||||||||||||||
Sbjct: 28585481 gcctccagtttttccttagaaaagaaaaggaggtgaagagg 28585441
Score = 137 bits (69), Expect = 1e-29
Identities = 69/69 (100%)
Strand = Plus / Minus
Query: 339 aggcagcaatgaatgtggatcacgaggttaacctcttggtggaggaaattcaccgtctgg 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28579094 aggcagcaatgaatgtggatcacgaggttaacctcttggtggaggaaattcaccgtctgg 28579035
Query: 399 gttcaaaaa 407
|||||||||
Sbjct: 28579034 gttcaaaaa 28579026
>Sscrofa_Chr03
|| Length = 144787322
Score = 676 bits (341), Expect = 0.0
Identities = 497/548 (90%), Gaps = 2/548 (0%)
Strand = Plus / Plus
Query: 427 tgtgaaatttggggtcctattccgagatgacaaatgtgccaacctctttgaagcattggt 486
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 118947740 tgtgaaatttggtgtcctcttccgagatgacaaatgtgccaacctctttgaagcacgggt 118947799
Query: 487 aggaactctcaaagctgcgaaacgaaggaagatcattacatacccaggagagctactttt 546
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 118947800 aggaactctcaaagctgcgatacgaaggaagagcattacatacccaggagagctactttt 118947859
Query: 547 gcaaggtgttcatgatgatgttgacattatattgctgcaagattaatgtggtttgcatag 606
||||||||||||||| || | |||||||||||| ||||||||| || ||||||||||
Sbjct: 118947860 gcaaggtgttcatgacgacgctgacattatattactgcaagatcgttgcagtttgcatag 118947919
Query: 607 ctttgtttattggtttttgtttgtttctgctaaactggaatattatgtcaaaggacaaac 666
|||||| ||||||||||| |||||||||||||||||||| ||||| |||| |||||||||
Sbjct: 118947920 ctttgtctattggtttttatttgtttctgctaaactggagtattaagtcagaggacaaac 118947979
Query: 667 acacgagcatacttagtgtatttttgtagaactttgtaacaaaaggagactcattttaga 726
| | ||||||||||| |||||||| |||||||||||||| || |||||| | ||||||
Sbjct: 118947980 atatgagcatacttaatgtattttcatagaactttgtaaccaacggagacac--tttaga 118948037
Query: 727 agtctgtccttttttatatcttgaaagcaatcttatgtattacactgtaagacaaacaaa 786
||||| | |||||||||||||||||||| |||||||||| |||||||||| |||||||
Sbjct: 118948038 agtcttcctttttttatatcttgaaagcagacttatgtattgcactgtaagataaacaaa 118948097
Query: 787 acctattctttttctcaggaatctggttgggaaatgtaggcagtgaggcttttttggtgc 846
|||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||
Sbjct: 118948098 acctattctttttctcaggaatctcattggaaaatgtaggcagggaggcttttttggtgg 118948157
Query: 847 aggtacaagagtgtttcataaatcattcttagacaatttctacagatacttgacattctg 906
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 118948158 gggcgcaagagtgtttcataaatcattcttagacaatttctacagatatttgacattctg 118948217
Query: 907 tgaaatcacgaagcaaacttgaagaccagctcccacaaggaatataacgtttatgtaata 966
|||| ||| ||||||||| |||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 118948218 tgaactcatgaagcaaacctgaagaccagctcccacatggaatataatgtttatgtaata 118948277
Query: 967 aaaacatg 974
||||||||
Sbjct: 118948278 aaaacatg 118948285
Score = 89.7 bits (45), Expect = 3e-15
Identities = 125/149 (83%), Gaps = 2/149 (1%)
Strand = Plus / Plus
Query: 227 tttgcctcagtcacttccttcctcagcctcttcctccccagttcgtggagaagataacca 286
|||||||| |||||||| |||||||||||||||||| |||||| ||||||||||| |
Sbjct: 118947563 tttgcctcggtcacttctttcctcagcctcttcctcttcagttcctggagaagatagcac 118947622
Query: 287 gtccgcacctgcgcggctccagtttttccttagaaaagaaaaggaggtgaagaggcagca 346
|||| ||| || | || |||| |||||||||||||||| ||| ||| ||||||||||
Sbjct: 118947623 gtccacactggcactgccccaggttttccttagaaaagagaagtaggcagagaggcagca 118947682
Query: 347 atgaatgtggatcacgaggttaacctctt 375
| | |||| ||| ||||||||||||||||
Sbjct: 118947683 a-ggatgt-gattacgaggttaacctctt 118947709
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,316,774
Number of extensions: 472
Number of successful extensions: 472
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 469
Number of HSP's successfully gapped: 6
Length of query: 1009
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 988
Effective length of database: 2,808,413,156
Effective search space: 2774712198128
Effective search space used: 2774712198128
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)