Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013911
(958 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033723.1| deoxyribonuclease-1-like 1 precursor [Bos ta... 335 5e-92
Alignment gi|NP_001192653.1| deoxyribonuclease gamma [Bos taurus]. 155 5e-38
Alignment gi|XP_002697036.1| PREDICTED: deoxyribonuclease I-like 3 [Bos t... 155 5e-38
Alignment gi|NP_776959.1| deoxyribonuclease-1 precursor [Bos taurus]. 145 4e-35
Alignment gi|NP_001098489.1| deoxyribonuclease-1-like 2 [Bos taurus]. 145 7e-35
Alignment gi|XP_001789810.2| PREDICTED: DNASE1L3 protein-like, partial [B... 128 8e-30
>ref|NP_001033723.1| deoxyribonuclease-1-like 1 precursor [Bos taurus].
Length = 316
Score = 335 bits (858), Expect = 5e-92
Identities = 175/256 (68%), Positives = 190/256 (74%)
Frame = +3
Query: 189 LDSSGGFQKHTCGHAXXXXXXXXAGGAEAFRICAFNAQRLTLAKVAREYVMDTLVRILAR 368
+ SSGGFQK GHA A GAE FRICAFNAQRLTLAKVARE V+DTLV+ILAR
Sbjct: 1 MHSSGGFQKAIHGHALLLLLLL-ASGAETFRICAFNAQRLTLAKVAREPVLDTLVKILAR 59
Query: 369 CDITVLQEVVDSTGSAIPLLLRELNRFDXXXXXXXXXXXXXXRGAYKEKYAYIYRSHRTQ 548
CDI VLQEVVDS+ +AIPLLLRELNRF R YKEKY Y+YRSH +
Sbjct: 60 CDIMVLQEVVDSSDTAIPLLLRELNRFGDSGPYASHSSLLLGRSTYKEKYVYLYRSHEAE 119
Query: 549 VLNFYLYPDEDDLFAREPFVGQFXXXXXXXXXXXXXXXHTTPKAVEPELKALYEVFLDVS 728
V + Y+Y D+DDLF REPFV F HTTPKAVE EL ALY+VFLD S
Sbjct: 120 VRDSYMYDDQDDLFTREPFVCWFSLRSKVLPSLVLVPLHTTPKAVETELNALYDVFLDAS 179
Query: 729 QRWQSEDVILLGDFNADCASLTKKRLDELVLRTQAGFHWAVADGVDTTVRASTHCTYDRI 908
RWQ++DVILLGDFNADC SLTKKRLD+LVLRTQAGFHWA+ADGVDTTVRASTHCTYDRI
Sbjct: 180 GRWQTKDVILLGDFNADCTSLTKKRLDDLVLRTQAGFHWAIADGVDTTVRASTHCTYDRI 239
Query: 909 VLHGERLQSLLRNAGA 956
VLHGE LQSLLR A A
Sbjct: 240 VLHGELLQSLLRGAAA 255
>ref|NP_001192653.1| deoxyribonuclease gamma [Bos taurus].
Length = 305
Score = 155 bits (392), Expect = 5e-38
Identities = 84/226 (37%), Positives = 121/226 (53%), Gaps = 5/226 (2%)
Frame = +3
Query: 267 AEAFRICAFNAQRLTLAKVAREYVMDTLVRILARCDITVLQEVVDSTGSAIPLLLRELN- 443
A A +IC+FN + +K A MD +V+++ RCDI +L E+ DS+ P L+ +LN
Sbjct: 18 ALALKICSFNVRSFGESKKANCNAMDVIVKVIKRCDIILLMEIKDSSNRICPTLMEKLNG 77
Query: 444 RFDXXXXXXXXXXXXXXRGAYKEKYAYIYRSHRTQVLNFYLYPD----EDDLFAREPFVG 611
R YKE+YA++Y+ V YLY D + D+F+REPFV
Sbjct: 78 NSRKGITYNYVISSRLGRNTYKEQYAFLYKEKLVSVKQSYLYHDYQAGDADVFSREPFVV 137
Query: 612 QFXXXXXXXXXXXXXXXHTTPKAVEPELKALYEVFLDVSQRWQSEDVILLGDFNADCASL 791
F HTTP+ E+ L +V+ DV +RW +E+ I +GDFNA C+ +
Sbjct: 138 WFQSPYTAVKDFVIVPLHTTPETSVREIDELADVYTDVKRRWNAENFIFMGDFNAGCSYV 197
Query: 792 TKKRLDELVLRTQAGFHWAVADGVDTTVRASTHCTYDRIVLHGERL 929
KK ++ LRT F W + D DTTV+ ST+C YDRIVL G+ +
Sbjct: 198 PKKAWKDIRLRTDPKFVWLIGDQEDTTVKKSTNCAYDRIVLRGQNI 243
>ref|XP_002697036.1| PREDICTED: deoxyribonuclease I-like 3 [Bos taurus].
Length = 305
Score = 155 bits (392), Expect = 5e-38
Identities = 84/226 (37%), Positives = 121/226 (53%), Gaps = 5/226 (2%)
Frame = +3
Query: 267 AEAFRICAFNAQRLTLAKVAREYVMDTLVRILARCDITVLQEVVDSTGSAIPLLLRELN- 443
A A +IC+FN + +K A MD +V+++ RCDI +L E+ DS+ P L+ +LN
Sbjct: 18 ALALKICSFNVRSFGESKKANCNAMDVIVKVIKRCDIILLMEIKDSSNRICPTLMEKLNG 77
Query: 444 RFDXXXXXXXXXXXXXXRGAYKEKYAYIYRSHRTQVLNFYLYPD----EDDLFAREPFVG 611
R YKE+YA++Y+ V YLY D + D+F+REPFV
Sbjct: 78 NSRKGITYNYVISSRLGRNTYKEQYAFLYKEKLVSVKQSYLYHDYQAGDADVFSREPFVV 137
Query: 612 QFXXXXXXXXXXXXXXXHTTPKAVEPELKALYEVFLDVSQRWQSEDVILLGDFNADCASL 791
F HTTP+ E+ L +V+ DV +RW +E+ I +GDFNA C+ +
Sbjct: 138 WFQSPYTAVKDFVIVPLHTTPETSVREIDELADVYTDVKRRWNAENFIFMGDFNAGCSYV 197
Query: 792 TKKRLDELVLRTQAGFHWAVADGVDTTVRASTHCTYDRIVLHGERL 929
KK ++ LRT F W + D DTTV+ ST+C YDRIVL G+ +
Sbjct: 198 PKKAWKDIRLRTDPKFVWLIGDQEDTTVKKSTNCAYDRIVLRGQNI 243
>ref|NP_776959.1| deoxyribonuclease-1 precursor [Bos taurus].
Length = 282
Score = 145 bits (367), Expect = 4e-35
Identities = 83/226 (36%), Positives = 122/226 (53%), Gaps = 5/226 (2%)
Frame = +3
Query: 273 AFRICAFNAQRLTLAKVAREYVMDTLVRILARCDITVLQEVVDSTGSAIPLLLRELNRFD 452
+ +I AFN + K++ + +VRI+ R DI ++QEV DS A+ LL LN+ D
Sbjct: 22 SLKIAAFNIRTFGETKMSNATLASYIVRIVRRYDIVLIQEVRDSHLVAVGKLLDYLNQ-D 80
Query: 453 XXXXXXXXXXXXXXRGAYKEKYAYIYRSHRTQVLNFYLYPDE-----DDLFAREPFVGQF 617
R +YKE+Y +++R ++ VL+ Y Y D +D F+REP V +F
Sbjct: 81 DPNTYHYVVSEPLGRNSYKERYLFLFRPNKVSVLDTYQYDDGCESCGNDSFSREPAVVKF 140
Query: 618 XXXXXXXXXXXXXXXHTTPKAVEPELKALYEVFLDVSQRWQSEDVILLGDFNADCASLTK 797
H+ P E+ +LY+V+LDV Q+W DV+L+GDFNADC+ +T
Sbjct: 141 SSHSTKVKEFAIVALHSAPSDAVAEINSLYDVYLDVQQKWHLNDVMLMGDFNADCSYVTS 200
Query: 798 KRLDELVLRTQAGFHWAVADGVDTTVRASTHCTYDRIVLHGERLQS 935
+ + LRT + F W + D DTT ST+C YDRIV+ G LQS
Sbjct: 201 SQWSSIRLRTSSTFQWLIPDSADTTA-TSTNCAYDRIVVAGSLLQS 245
>ref|NP_001098489.1| deoxyribonuclease-1-like 2 [Bos taurus].
Length = 278
Score = 145 bits (365), Expect = 7e-35
Identities = 82/233 (35%), Positives = 122/233 (52%)
Frame = +3
Query: 258 AGGAEAFRICAFNAQRLTLAKVAREYVMDTLVRILARCDITVLQEVVDSTGSAIPLLLRE 437
A A+A RI AFN Q +KV+ + +ILA D+ ++QEV D SA+ +L+ +
Sbjct: 16 ASRAQALRIGAFNIQSFGDSKVSDPGCGGVIAQILAGYDVMLVQEVRDPDLSAVSVLMEQ 75
Query: 438 LNRFDXXXXXXXXXXXXXXRGAYKEKYAYIYRSHRTQVLNFYLYPDEDDLFAREPFVGQF 617
+N R YKE Y ++YR V++ Y YPD +D F+REPFV +
Sbjct: 76 INSVSRHEYNFVSSEPLG-RDQYKEMYLFVYRKDTVSVVDTYQYPDAEDAFSREPFVVKV 134
Query: 618 XXXXXXXXXXXXXXXHTTPKAVEPELKALYEVFLDVSQRWQSEDVILLGDFNADCASLTK 797
H P E+ ALY+V+LDV +W ++D++ LGDFNADC + +
Sbjct: 135 SAPGSAATELVLIPLHAAPHHAVAEIDALYDVYLDVIDKWGTDDILFLGDFNADCKYVRE 194
Query: 798 KRLDELVLRTQAGFHWAVADGVDTTVRASTHCTYDRIVLHGERLQSLLRNAGA 956
+ + LR+ F W + D DTTV ++ C YDRIV+ G RL+ L++ A
Sbjct: 195 QDWPAIRLRSSEVFKWLIPDSADTTV-GNSDCAYDRIVVCGSRLRKSLKHQSA 246
>ref|XP_001789810.2| PREDICTED: DNASE1L3 protein-like, partial [Bos taurus].
Length = 188
Score = 128 bits (321), Expect = 8e-30
Identities = 69/188 (36%), Positives = 98/188 (52%), Gaps = 5/188 (2%)
Frame = +3
Query: 357 ILARCDITVLQEVVDSTGSAIPLLLRELN-RFDXXXXXXXXXXXXXXRGAYKEKYAYIYR 533
++ RCDI +L E+ DS+ P L+ +LN R YKE+YA++Y+
Sbjct: 1 VIKRCDIILLMEIKDSSNRICPTLMEKLNGNSRKGITYNYVISSRLGRNTYKEQYAFLYK 60
Query: 534 SHRTQVLNFYLYPD----EDDLFAREPFVGQFXXXXXXXXXXXXXXXHTTPKAVEPELKA 701
V YLY D + D+F+REPFV F HTTP+ E+
Sbjct: 61 EKLVSVKQSYLYHDYQAGDADVFSREPFVVWFQSPYTAVKDFVIVPLHTTPETSVREIDE 120
Query: 702 LYEVFLDVSQRWQSEDVILLGDFNADCASLTKKRLDELVLRTQAGFHWAVADGVDTTVRA 881
L +V+ DV +RW +E+ I +GDFNA C+ + KK ++ LRT F W + D DTTV+
Sbjct: 121 LADVYTDVKRRWNAENFIFMGDFNAGCSYVPKKAWKDIRLRTDPKFVWLIGDQEDTTVKK 180
Query: 882 STHCTYDR 905
ST+C YDR
Sbjct: 181 STNCAYDR 188
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,202,986
Number of extensions: 1290277
Number of successful extensions: 5985
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5945
Number of HSP's successfully gapped: 6
Length of query: 319
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 217
Effective length of database: 14,306,398
Effective search space: 3104488366
Effective search space used: 3104488366
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013911
(958 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_549370.2| PREDICTED: similar to Deoxyribonuclease I-like ... 327 1e-89
Alignment gi|XP_867663.1| PREDICTED: similar to Deoxyribonuclease I-like ... 315 4e-86
Alignment gi|XP_533780.1| PREDICTED: similar to Deoxyribonuclease gamma p... 167 2e-41
Alignment gi|NP_001002946.1| deoxyribonuclease-1 precursor [Canis lupus f... 148 8e-36
Alignment gi|XP_547180.2| PREDICTED: similar to Deoxyribonuclease I-like ... 96 4e-20
>ref|XP_549370.2| PREDICTED: similar to Deoxyribonuclease I-like 1 precursor (DNase
I-like 1) (Muscle-specific DNase I-like) (DNase X) (XIB)
isoform 1 [Canis familiaris].
Length = 295
Score = 327 bits (837), Expect = 1e-89
Identities = 167/232 (71%), Positives = 180/232 (77%)
Frame = +3
Query: 261 GGAEAFRICAFNAQRLTLAKVAREYVMDTLVRILARCDITVLQEVVDSTGSAIPLLLREL 440
GGAEAFRICAFNAQRLTL+KVARE+VMD VRILARCDI VLQEVVDS+GSAI LLLREL
Sbjct: 13 GGAEAFRICAFNAQRLTLSKVAREHVMDIFVRILARCDIMVLQEVVDSSGSAISLLLREL 72
Query: 441 NRFDXXXXXXXXXXXXXXRGAYKEKYAYIYRSHRTQVLNFYLYPDEDDLFAREPFVGQFX 620
NRFD R Y EKY YIYRSH+TQVL+ Y+Y D+DDLFAREPFV QF
Sbjct: 73 NRFDNSGFYSFLSSPLLGRNTYMEKYVYIYRSHKTQVLDSYVYEDKDDLFAREPFVAQFT 132
Query: 621 XXXXXXXXXXXXXXHTTPKAVEPELKALYEVFLDVSQRWQSEDVILLGDFNADCASLTKK 800
HTTPKAVE EL ALY+VFLDVSQRWQS+D+ILLGDFNADCASL KK
Sbjct: 133 FPSKVLPSLVLVPLHTTPKAVEKELNALYDVFLDVSQRWQSKDMILLGDFNADCASLNKK 192
Query: 801 RLDELVLRTQAGFHWAVADGVDTTVRASTHCTYDRIVLHGERLQSLLRNAGA 956
RL EL LRT+AGF W +ADG DTTVRASTHC YDRIVLHGER QSLL +A A
Sbjct: 193 RLAELALRTEAGFRWVIADGEDTTVRASTHCAYDRIVLHGERCQSLLSSAAA 244
>ref|XP_867663.1| PREDICTED: similar to Deoxyribonuclease I-like 1 precursor (DNase
I-like 1) (Muscle-specific DNase I-like) (DNase X) (XIB)
isoform 2 [Canis familiaris].
Length = 314
Score = 315 bits (807), Expect = 4e-86
Identities = 167/251 (66%), Positives = 180/251 (71%), Gaps = 19/251 (7%)
Frame = +3
Query: 261 GGAEAFRICAFNAQRLTLAKVAREYVMDTLVRILARCDITVLQEVVDSTGSAIPLLLREL 440
GGAEAFRICAFNAQRLTL+KVARE+VMD VRILARCDI VLQEVVDS+GSAI LLLREL
Sbjct: 13 GGAEAFRICAFNAQRLTLSKVAREHVMDIFVRILARCDIMVLQEVVDSSGSAISLLLREL 72
Query: 441 NRFDXXXXXXXXXXXXXXRGAYKEKYAYIYRSHRTQVLNFYLYPDEDDLFAREPFVGQFX 620
NRFD R Y EKY YIYRSH+TQVL+ Y+Y D+DDLFAREPFV QF
Sbjct: 73 NRFDNSGFYSFLSSPLLGRNTYMEKYVYIYRSHKTQVLDSYVYEDKDDLFAREPFVAQFT 132
Query: 621 XXXXXXXXXXXXXX-------------------HTTPKAVEPELKALYEVFLDVSQRWQS 743
HTTPKAVE EL ALY+VFLDVSQRWQS
Sbjct: 133 FPSKGGLGGECPERVGASSWGLAVLPSLVLVPLHTTPKAVEKELNALYDVFLDVSQRWQS 192
Query: 744 EDVILLGDFNADCASLTKKRLDELVLRTQAGFHWAVADGVDTTVRASTHCTYDRIVLHGE 923
+D+ILLGDFNADCASL KKRL EL LRT+AGF W +ADG DTTVRASTHC YDRIVLHGE
Sbjct: 193 KDMILLGDFNADCASLNKKRLAELALRTEAGFRWVIADGEDTTVRASTHCAYDRIVLHGE 252
Query: 924 RLQSLLRNAGA 956
R QSLL +A A
Sbjct: 253 RCQSLLSSAAA 263
>ref|XP_533780.1| PREDICTED: similar to Deoxyribonuclease gamma precursor (DNase
gamma) (Deoxyribonuclease I-like 3) (DNase I homolog
protein DHP2) (Liver and spleen DNase) (LS-DNase) (LSD)
[Canis familiaris].
Length = 304
Score = 167 bits (422), Expect = 2e-41
Identities = 90/226 (39%), Positives = 124/226 (54%), Gaps = 5/226 (2%)
Frame = +3
Query: 267 AEAFRICAFNAQRLTLAKVAREYVMDTLVRILARCDITVLQEVVDSTGSAIPLLLRELN- 443
A A R+C+FN + AK + MD +V+++ RCDI +L EV DS P LL +LN
Sbjct: 18 ALALRLCSFNVRSFGGAKRENKNAMDVIVKVIKRCDIILLMEVKDSNNMICPTLLEKLNG 77
Query: 444 RFDXXXXXXXXXXXXXXRGAYKEKYAYIYRSHRTQVLNFYLYPD----EDDLFAREPFVG 611
R YKE+YA++Y+ V +YLY D + D+F+REPFV
Sbjct: 78 NSRRGIKYNYVISSRLGRNTYKEQYAFLYKEKLVSVKKYYLYHDYQAGDADVFSREPFVV 137
Query: 612 QFXXXXXXXXXXXXXXXHTTPKAVEPELKALYEVFLDVSQRWQSEDVILLGDFNADCASL 791
F HTTP+A E+ L +V+LDV +RW++E+ I +GDFNA C+ +
Sbjct: 138 WFQSPFTAVKDFVIVPLHTTPEASVKEIDELVDVYLDVKRRWKAENFIFMGDFNAGCSYV 197
Query: 792 TKKRLDELVLRTQAGFHWAVADGVDTTVRASTHCTYDRIVLHGERL 929
KK + LRT GF W + D DTTV++STHC YDRIVL G +
Sbjct: 198 PKKAWKIIRLRTDPGFVWLIGDQEDTTVKSSTHCAYDRIVLRGPEI 243
>ref|NP_001002946.1| deoxyribonuclease-1 precursor [Canis lupus familiaris].
Length = 284
Score = 148 bits (373), Expect = 8e-36
Identities = 84/228 (36%), Positives = 121/228 (53%), Gaps = 5/228 (2%)
Frame = +3
Query: 264 GAEAFRICAFNAQRLTLAKVAREYVMDTLVRILARCDITVLQEVVDSTGSAIPLLLRELN 443
GA A R+ AFN + K++ + +V+IL+R D+ V+QEV DS +A+ LL LN
Sbjct: 19 GALALRMAAFNIRTFGETKMSNATLSKYIVQILSRYDVAVVQEVRDSHLTAVGKLLDTLN 78
Query: 444 RFDXXXXXXXXXXXXXXRGAYKEKYAYIYRSHRTQVLNFYLYPDE-----DDLFAREPFV 608
+ D R +YKE+Y +++R R VL+ Y Y D +D F+REP +
Sbjct: 79 Q-DDPNAYHYVVSEPLGRSSYKERYLFLFRPDRVSVLDSYQYDDGCEPCGNDTFSREPAI 137
Query: 609 GQFXXXXXXXXXXXXXXXHTTPKAVEPELKALYEVFLDVSQRWQSEDVILLGDFNADCAS 788
+F H P E+ ALY+V+LDV +W ED++L+GDFNA C+
Sbjct: 138 VRFHSPLTEVKEFAVVPLHAAPLDAVAEIDALYDVYLDVQHKWDLEDIVLMGDFNAGCSY 197
Query: 789 LTKKRLDELVLRTQAGFHWAVADGVDTTVRASTHCTYDRIVLHGERLQ 932
+ + + LRT F W + D DTT STHC YDRIV+ G +LQ
Sbjct: 198 VAASQWSSIRLRTNPAFQWLIPDTADTT-STSTHCAYDRIVVAGSQLQ 244
>ref|XP_547180.2| PREDICTED: similar to Deoxyribonuclease I-like 2 precursor (DNase
I-like 2) (DNase I homolog protein DHP1) [Canis
familiaris].
Length = 218
Score = 96.3 bits (238), Expect = 4e-20
Identities = 60/170 (35%), Positives = 80/170 (47%)
Frame = +3
Query: 258 AGGAEAFRICAFNAQRLTLAKVAREYVMDTLVRILARCDITVLQEVVDSTGSAIPLLLRE 437
A GA A RI AFN Q +KV + +ILA DIT++QEV D SA+ LL +
Sbjct: 16 ATGAAALRIGAFNIQSFGDSKVLDPACGGIIAQILAGYDITLVQEVRDPDLSAVSALLEQ 75
Query: 438 LNRFDXXXXXXXXXXXXXXRGAYKEKYAYIYRSHRTQVLNFYLYPDEDDLFAREPFVGQF 617
+N R YKE Y ++YR VL+ Y YPD D F+REPFV +F
Sbjct: 76 INSVSRHEYSFVSSEPLG-RDQYKEMYLFVYRKDAVSVLDTYQYPDPGDFFSREPFVVKF 134
Query: 618 XXXXXXXXXXXXXXXHTTPKAVEPELKALYEVFLDVSQRWQSEDVILLGD 767
H P E+ ALY+V+LDV +W ++ G+
Sbjct: 135 SAPGSAARELVLIPLHAAPHQAVAEIDALYDVYLDVIDKWGTDAAQQFGE 184
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,837,861
Number of extensions: 1321473
Number of successful extensions: 6142
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6103
Number of HSP's successfully gapped: 5
Length of query: 319
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 216
Effective length of database: 15,440,896
Effective search space: 3335233536
Effective search space used: 3335233536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013911
(958 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033721.1| deoxyribonuclease-1-like 1 precursor [Sus sc... 427 e-120
Alignment gi|XP_003354682.1| PREDICTED: deoxyribonuclease-1-like [Sus scr... 149 3e-36
Alignment gi|NP_999156.1| deoxyribonuclease-1 precursor [Sus scrofa]. 149 3e-36
>ref|NP_001033721.1| deoxyribonuclease-1-like 1 precursor [Sus scrofa].
Length = 315
Score = 427 bits (1099), Expect = e-120
Identities = 218/256 (85%), Positives = 219/256 (85%)
Frame = +3
Query: 189 LDSSGGFQKHTCGHAXXXXXXXXAGGAEAFRICAFNAQRLTLAKVAREYVMDTLVRILAR 368
+DSSGGFQKHTCGHA AGGAEAFRICAFNAQRLTLAKVAREYVMDTLVRILAR
Sbjct: 1 MDSSGGFQKHTCGHALLLLLLLLAGGAEAFRICAFNAQRLTLAKVAREYVMDTLVRILAR 60
Query: 369 CDITVLQEVVDSTGSAIPLLLRELNRFDXXXXXXXXXXXXXXRGAYKEKYAYIYRSHRTQ 548
CDITVLQEVVDSTGSAIPLLLRELNRFD RGAYKEKYAYIYRSHRTQ
Sbjct: 61 CDITVLQEVVDSTGSAIPLLLRELNRFDGSGPYSSLSSPLLGRGAYKEKYAYIYRSHRTQ 120
Query: 549 VLNFYLYPDEDDLFAREPFVGQFXXXXXXXXXXXXXXXHTTPKAVEPELKALYEVFLDVS 728
VLNFYLYPDEDDLFAREPFVGQF HTTPKAVEPELKALYEVFLDVS
Sbjct: 121 VLNFYLYPDEDDLFAREPFVGQFSLPSKVLPSLVLVPLHTTPKAVEPELKALYEVFLDVS 180
Query: 729 QRWQSEDVILLGDFNADCASLTKKRLDELVLRTQAGFHWAVADGVDTTVRASTHCTYDRI 908
QRWQSEDVILLGDFNADCASLTKKRLDELVLRTQAGFHWAVADGVDTTVRASTHCTYDRI
Sbjct: 181 QRWQSEDVILLGDFNADCASLTKKRLDELVLRTQAGFHWAVADGVDTTVRASTHCTYDRI 240
Query: 909 VLHGERLQSLLRNAGA 956
VLHGERLQSLLRNAGA
Sbjct: 241 VLHGERLQSLLRNAGA 256
>ref|XP_003354682.1| PREDICTED: deoxyribonuclease-1-like [Sus scrofa].
Length = 284
Score = 149 bits (375), Expect = 3e-36
Identities = 86/227 (37%), Positives = 122/227 (53%), Gaps = 5/227 (2%)
Frame = +3
Query: 267 AEAFRICAFNAQRLTLAKVAREYVMDTLVRILARCDITVLQEVVDSTGSAIPLLLRELNR 446
A + RI AFN + K++ + + +VRIL+R DI ++QEV DS +A+ LL ELN+
Sbjct: 20 ALSLRIAAFNIRTFGETKMSNATLSNYIVRILSRYDIALIQEVRDSHLTAVGKLLNELNQ 79
Query: 447 FDXXXXXXXXXXXXXXRGAYKEKYAYIYRSHRTQVLNFYLYPDE-----DDLFAREPFVG 611
D R YKE+Y +++R + VL+ YLY D +D F REP V
Sbjct: 80 -DDPNNYHHVVSEPLGRSTYKERYLFVFRPDQVSVLDSYLYDDGCEPCGNDTFNREPSVV 138
Query: 612 QFXXXXXXXXXXXXXXXHTTPKAVEPELKALYEVFLDVSQRWQSEDVILLGDFNADCASL 791
+F H P E+ +LY+V+L+V Q+W ED++L+GDFNA C+ +
Sbjct: 139 KFSSPFTQVKEFAIVPLHAAPSDAAAEIDSLYDVYLNVRQKWDLEDIMLMGDFNAGCSYV 198
Query: 792 TKKRLDELVLRTQAGFHWAVADGVDTTVRASTHCTYDRIVLHGERLQ 932
T + LR F W + D DTTV +STHC YDRIV+ G LQ
Sbjct: 199 TTSHWSSIRLRESPPFQWLIPDTADTTV-SSTHCAYDRIVVAGPLLQ 244
>ref|NP_999156.1| deoxyribonuclease-1 precursor [Sus scrofa].
Length = 284
Score = 149 bits (375), Expect = 3e-36
Identities = 86/227 (37%), Positives = 122/227 (53%), Gaps = 5/227 (2%)
Frame = +3
Query: 267 AEAFRICAFNAQRLTLAKVAREYVMDTLVRILARCDITVLQEVVDSTGSAIPLLLRELNR 446
A + RI AFN + K++ + + +VRIL+R DI ++QEV DS +A+ LL ELN+
Sbjct: 20 ALSLRIAAFNIRTFGETKMSNATLSNYIVRILSRYDIALIQEVRDSHLTAVGKLLNELNQ 79
Query: 447 FDXXXXXXXXXXXXXXRGAYKEKYAYIYRSHRTQVLNFYLYPDE-----DDLFAREPFVG 611
D R YKE+Y +++R + VL+ YLY D +D F REP V
Sbjct: 80 -DDPNNYHHVVSEPLGRSTYKERYLFVFRPDQVSVLDSYLYDDGCEPCGNDTFNREPSVV 138
Query: 612 QFXXXXXXXXXXXXXXXHTTPKAVEPELKALYEVFLDVSQRWQSEDVILLGDFNADCASL 791
+F H P E+ +LY+V+L+V Q+W ED++L+GDFNA C+ +
Sbjct: 139 KFSSPSTQVKEFAIVPLHAAPSDAAAEIDSLYDVYLNVRQKWDLEDIMLMGDFNAGCSYV 198
Query: 792 TKKRLDELVLRTQAGFHWAVADGVDTTVRASTHCTYDRIVLHGERLQ 932
T + LR F W + D DTTV +STHC YDRIV+ G LQ
Sbjct: 199 TTSHWSSIRLRESPPFQWLIPDTADTTV-SSTHCAYDRIVVAGPLLQ 244
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,630,210
Number of extensions: 833183
Number of successful extensions: 3812
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3785
Number of HSP's successfully gapped: 3
Length of query: 319
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 220
Effective length of database: 8,879,129
Effective search space: 1953408380
Effective search space used: 1953408380
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013911
(958 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001165625.1| deoxyribonuclease-1-like 1 precursor [Mus mu... 285 9e-81
Alignment gi|NP_081385.1| deoxyribonuclease-1-like 1 precursor [Mus muscu... 285 9e-81
Alignment gi|NP_031896.3| deoxyribonuclease gamma precursor [Mus musculus]. 151 8e-37
Alignment gi|NP_034191.3| deoxyribonuclease-1 precursor [Mus musculus]. 147 9e-36
Alignment gi|NP_079994.2| deoxyribonuclease-1-like 2 precursor [Mus muscu... 147 2e-35
>ref|NP_001165625.1| deoxyribonuclease-1-like 1 precursor [Mus musculus].
Length = 314
Score = 285 bits (730), Expect(2) = 9e-81
Identities = 147/230 (63%), Positives = 167/230 (72%)
Frame = +3
Query: 261 GGAEAFRICAFNAQRLTLAKVAREYVMDTLVRILARCDITVLQEVVDSTGSAIPLLLREL 440
GG EAFRICAFNA RLTLAK+ +E VMDTLV+ILARCDI VLQEVVDS+ + +P LL++L
Sbjct: 33 GGTEAFRICAFNAHRLTLAKLTKESVMDTLVQILARCDIMVLQEVVDSSQNTVPFLLQKL 92
Query: 441 NRFDXXXXXXXXXXXXXXRGAYKEKYAYIYRSHRTQVLNFYLYPDEDDLFAREPFVGQFX 620
R YKEKY YIYRS +TQVLNFY Y D DD+FAREPFV F
Sbjct: 93 KS---SRSYSFLNSSLLGRSTYKEKYVYIYRSDKTQVLNFYQYNDTDDIFAREPFVAHFT 149
Query: 621 XXXXXXXXXXXXXXHTTPKAVEPELKALYEVFLDVSQRWQSEDVILLGDFNADCASLTKK 800
HTTPK VE EL ALY+VFLDV QRWQ+E+VILLGDFNADCASLTKK
Sbjct: 150 LPSKTLPSVVLVPLHTTPKDVEKELNALYDVFLDVYQRWQNENVILLGDFNADCASLTKK 209
Query: 801 RLDELVLRTQAGFHWAVADGVDTTVRASTHCTYDRIVLHGERLQSLLRNA 950
RL L+LRT+AGFHW + DG DTTVRAST+CTYDRIV+HG+ Q LL+ A
Sbjct: 210 RLKSLLLRTKAGFHWVIPDGEDTTVRASTNCTYDRIVVHGQGCQMLLKAA 259
Score = 33.9 bits (76), Expect(2) = 9e-81
Identities = 12/14 (85%), Positives = 14/14 (100%)
Frame = +2
Query: 182 GQPGFLWRVPEAHM 223
GQPGFLWRVP+AH+
Sbjct: 4 GQPGFLWRVPDAHI 17
>ref|NP_081385.1| deoxyribonuclease-1-like 1 precursor [Mus musculus].
Length = 314
Score = 285 bits (730), Expect(2) = 9e-81
Identities = 147/230 (63%), Positives = 167/230 (72%)
Frame = +3
Query: 261 GGAEAFRICAFNAQRLTLAKVAREYVMDTLVRILARCDITVLQEVVDSTGSAIPLLLREL 440
GG EAFRICAFNA RLTLAK+ +E VMDTLV+ILARCDI VLQEVVDS+ + +P LL++L
Sbjct: 33 GGTEAFRICAFNAHRLTLAKLTKESVMDTLVQILARCDIMVLQEVVDSSQNTVPFLLQKL 92
Query: 441 NRFDXXXXXXXXXXXXXXRGAYKEKYAYIYRSHRTQVLNFYLYPDEDDLFAREPFVGQFX 620
R YKEKY YIYRS +TQVLNFY Y D DD+FAREPFV F
Sbjct: 93 KS---SRSYSFLNSSLLGRSTYKEKYVYIYRSDKTQVLNFYQYNDTDDIFAREPFVAHFT 149
Query: 621 XXXXXXXXXXXXXXHTTPKAVEPELKALYEVFLDVSQRWQSEDVILLGDFNADCASLTKK 800
HTTPK VE EL ALY+VFLDV QRWQ+E+VILLGDFNADCASLTKK
Sbjct: 150 LPSKTLPSVVLVPLHTTPKDVEKELNALYDVFLDVYQRWQNENVILLGDFNADCASLTKK 209
Query: 801 RLDELVLRTQAGFHWAVADGVDTTVRASTHCTYDRIVLHGERLQSLLRNA 950
RL L+LRT+AGFHW + DG DTTVRAST+CTYDRIV+HG+ Q LL+ A
Sbjct: 210 RLKSLLLRTKAGFHWVIPDGEDTTVRASTNCTYDRIVVHGQGCQMLLKAA 259
Score = 33.9 bits (76), Expect(2) = 9e-81
Identities = 12/14 (85%), Positives = 14/14 (100%)
Frame = +2
Query: 182 GQPGFLWRVPEAHM 223
GQPGFLWRVP+AH+
Sbjct: 4 GQPGFLWRVPDAHI 17
>ref|NP_031896.3| deoxyribonuclease gamma precursor [Mus musculus].
Length = 310
Score = 151 bits (381), Expect = 8e-37
Identities = 80/224 (35%), Positives = 118/224 (52%), Gaps = 5/224 (2%)
Frame = +3
Query: 273 AFRICAFNAQRLTLAKVAREYVMDTLVRILARCDITVLQEVVDSTGSAIPLLLRELN-RF 449
A R+C+FN + +K MD +V+I+ RCD+ +L E+ DS+ + P+L+ +LN
Sbjct: 25 ALRLCSFNVRSFGASKKENHEAMDIIVKIIKRCDLILLMEIKDSSNNICPMLMEKLNGNS 84
Query: 450 DXXXXXXXXXXXXXXRGAYKEKYAYIYRSHRTQVLNFYLYPD----EDDLFAREPFVGQF 617
R YKE+YA++Y+ V Y Y D + D+F+REPFV F
Sbjct: 85 RRSTTYNYVISSRLGRNTYKEQYAFVYKEKLVSVKTKYHYHDYQDGDTDVFSREPFVVWF 144
Query: 618 XXXXXXXXXXXXXXXHTTPKAVEPELKALYEVFLDVSQRWQSEDVILLGDFNADCASLTK 797
HTTP+ E+ L +V+ DV +W++E+ I +GDFNA C+ + K
Sbjct: 145 HSPFTAVKDFVIVPLHTTPETSVKEIDELVDVYTDVRSQWKTENFIFMGDFNAGCSYVPK 204
Query: 798 KRLDELVLRTQAGFHWAVADGVDTTVRASTHCTYDRIVLHGERL 929
K + LRT F W + D DTTV+ ST C YDRIVL G+ +
Sbjct: 205 KAWQNIRLRTDPKFVWLIGDQEDTTVKKSTSCAYDRIVLCGQEI 248
>ref|NP_034191.3| deoxyribonuclease-1 precursor [Mus musculus].
Length = 284
Score = 147 bits (372), Expect = 9e-36
Identities = 87/228 (38%), Positives = 120/228 (52%), Gaps = 5/228 (2%)
Frame = +3
Query: 267 AEAFRICAFNAQRLTLAKVAREYVMDTLVRILARCDITVLQEVVDSTGSAIPLLLRELNR 446
A RI AFN + K++ + V+IL+R DI V+QEV DS A+ LL ELNR
Sbjct: 20 AGTLRIAAFNIRTFGETKMSNATLSVYFVKILSRYDIAVIQEVRDSHLVAVGKLLDELNR 79
Query: 447 FDXXXXXXXXXXXXXXRGAYKEKYAYIYRSHRTQVLNFYLYPDE-----DDLFAREPFVG 611
D R +YKE+Y ++YR + +L+ Y Y D +D F+REP +
Sbjct: 80 -DKPDTYRYVVSEPLGRKSYKEQYLFVYRPDQVSILDSYQYDDGCEPCGNDTFSREPAIV 138
Query: 612 QFXXXXXXXXXXXXXXXHTTPKAVEPELKALYEVFLDVSQRWQSEDVILLGDFNADCASL 791
+F H P E+ ALY+V+LDV Q+W ED++ +GDFNA C+ +
Sbjct: 139 KFFSPYTEVQEFAIVPLHAAPTEAVSEIDALYDVYLDVWQKWGLEDIMFMGDFNAGCSYV 198
Query: 792 TKKRLDELVLRTQAGFHWAVADGVDTTVRASTHCTYDRIVLHGERLQS 935
T + + LRT F W + D DTTV STHC YDRIV+ G LQ+
Sbjct: 199 TSSQWSSIRLRTSPIFQWLIPDSADTTV-TSTHCAYDRIVVAGALLQA 245
>ref|NP_079994.2| deoxyribonuclease-1-like 2 precursor [Mus musculus].
Length = 278
Score = 147 bits (370), Expect = 2e-35
Identities = 84/227 (37%), Positives = 117/227 (51%)
Frame = +3
Query: 264 GAEAFRICAFNAQRLTLAKVAREYVMDTLVRILARCDITVLQEVVDSTGSAIPLLLRELN 443
GA A RI AFN Q KV+ + +ILA DI ++QEV D SA+ LL+ ++N
Sbjct: 18 GATALRIGAFNVQSFGDNKVSDPDCGSVIAQILAGYDIALVQEVRDPDLSAVSLLMEQIN 77
Query: 444 RFDXXXXXXXXXXXXXXRGAYKEKYAYIYRSHRTQVLNFYLYPDEDDLFAREPFVGQFXX 623
R R YKE Y ++YR V++ Y YPD +D F+REPFV +F
Sbjct: 78 RVSKHEYGFVSSKPLG-RDQYKEMYLFVYRKDVASVVSTYQYPDPEDAFSREPFVVKFSV 136
Query: 624 XXXXXXXXXXXXXHTTPKAVEPELKALYEVFLDVSQRWQSEDVILLGDFNADCASLTKKR 803
H P E+ ALY+V+LDV +W ++D++ LGDFNADC +
Sbjct: 137 PSCATKELVLIPLHAAPHQAVAEIDALYDVYLDVIDKWNTDDMLFLGDFNADCKYVKAHD 196
Query: 804 LDELVLRTQAGFHWAVADGVDTTVRASTHCTYDRIVLHGERLQSLLR 944
+ LR+ F W + D DTTV ++ C YDRIV+ G L+ L+
Sbjct: 197 WPSIRLRSSEVFKWLIPDSADTTV-GNSDCAYDRIVVSGAHLRRSLK 242
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,286,282
Number of extensions: 1061734
Number of successful extensions: 4611
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4569
Number of HSP's successfully gapped: 7
Length of query: 319
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 218
Effective length of database: 12,583,923
Effective search space: 2743295214
Effective search space used: 2743295214
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013911
(958 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001009934.1| deoxyribonuclease-1-like 1 precursor [Homo s... 329 2e-90
Alignment gi|NP_001009933.1| deoxyribonuclease-1-like 1 precursor [Homo s... 329 2e-90
Alignment gi|NP_001009932.1| deoxyribonuclease-1-like 1 precursor [Homo s... 329 2e-90
Alignment gi|NP_006721.1| deoxyribonuclease-1-like 1 precursor [Homo sapi... 329 2e-90
Alignment gi|NP_004935.1| deoxyribonuclease gamma precursor [Homo sapiens]. 157 2e-38
Alignment gi|NP_005214.2| deoxyribonuclease-1 precursor [Homo sapiens]. 137 1e-32
Alignment gi|NP_001365.1| deoxyribonuclease-1-like 2 precursor [Homo sapi... 135 4e-32
>ref|NP_001009934.1| deoxyribonuclease-1-like 1 precursor [Homo sapiens].
Length = 302
Score = 329 bits (844), Expect = 2e-90
Identities = 167/233 (71%), Positives = 181/233 (77%)
Frame = +3
Query: 258 AGGAEAFRICAFNAQRLTLAKVAREYVMDTLVRILARCDITVLQEVVDSTGSAIPLLLRE 437
A GA+AFRICAFNAQRLTLAKVARE VMDTLVRILARCDI VLQEVVDS+GSAIPLLLRE
Sbjct: 13 ANGAQAFRICAFNAQRLTLAKVAREQVMDTLVRILARCDIMVLQEVVDSSGSAIPLLLRE 72
Query: 438 LNRFDXXXXXXXXXXXXXXRGAYKEKYAYIYRSHRTQVLNFYLYPDEDDLFAREPFVGQF 617
LNRFD R Y E Y Y YRSH+TQVL+ Y+Y DEDD+FAREPFV QF
Sbjct: 73 LNRFDGSGPYSTLSSPQLGRSTYMETYVYFYRSHKTQVLSSYVYNDEDDVFAREPFVAQF 132
Query: 618 XXXXXXXXXXXXXXXHTTPKAVEPELKALYEVFLDVSQRWQSEDVILLGDFNADCASLTK 797
HTTPKAVE EL ALY+VFL+VSQ WQS+DVILLGDFNADCASLTK
Sbjct: 133 SLPSNVLPSLVLVPLHTTPKAVEKELNALYDVFLEVSQHWQSKDVILLGDFNADCASLTK 192
Query: 798 KRLDELVLRTQAGFHWAVADGVDTTVRASTHCTYDRIVLHGERLQSLLRNAGA 956
KRLD+L LRT+ GFHW +ADG DTTVRASTHCTYDR+VLHGER +SLL A A
Sbjct: 193 KRLDKLELRTEPGFHWVIADGEDTTVRASTHCTYDRVVLHGERCRSLLHTAAA 245
>ref|NP_001009933.1| deoxyribonuclease-1-like 1 precursor [Homo sapiens].
Length = 302
Score = 329 bits (844), Expect = 2e-90
Identities = 167/233 (71%), Positives = 181/233 (77%)
Frame = +3
Query: 258 AGGAEAFRICAFNAQRLTLAKVAREYVMDTLVRILARCDITVLQEVVDSTGSAIPLLLRE 437
A GA+AFRICAFNAQRLTLAKVARE VMDTLVRILARCDI VLQEVVDS+GSAIPLLLRE
Sbjct: 13 ANGAQAFRICAFNAQRLTLAKVAREQVMDTLVRILARCDIMVLQEVVDSSGSAIPLLLRE 72
Query: 438 LNRFDXXXXXXXXXXXXXXRGAYKEKYAYIYRSHRTQVLNFYLYPDEDDLFAREPFVGQF 617
LNRFD R Y E Y Y YRSH+TQVL+ Y+Y DEDD+FAREPFV QF
Sbjct: 73 LNRFDGSGPYSTLSSPQLGRSTYMETYVYFYRSHKTQVLSSYVYNDEDDVFAREPFVAQF 132
Query: 618 XXXXXXXXXXXXXXXHTTPKAVEPELKALYEVFLDVSQRWQSEDVILLGDFNADCASLTK 797
HTTPKAVE EL ALY+VFL+VSQ WQS+DVILLGDFNADCASLTK
Sbjct: 133 SLPSNVLPSLVLVPLHTTPKAVEKELNALYDVFLEVSQHWQSKDVILLGDFNADCASLTK 192
Query: 798 KRLDELVLRTQAGFHWAVADGVDTTVRASTHCTYDRIVLHGERLQSLLRNAGA 956
KRLD+L LRT+ GFHW +ADG DTTVRASTHCTYDR+VLHGER +SLL A A
Sbjct: 193 KRLDKLELRTEPGFHWVIADGEDTTVRASTHCTYDRVVLHGERCRSLLHTAAA 245
>ref|NP_001009932.1| deoxyribonuclease-1-like 1 precursor [Homo sapiens].
Length = 302
Score = 329 bits (844), Expect = 2e-90
Identities = 167/233 (71%), Positives = 181/233 (77%)
Frame = +3
Query: 258 AGGAEAFRICAFNAQRLTLAKVAREYVMDTLVRILARCDITVLQEVVDSTGSAIPLLLRE 437
A GA+AFRICAFNAQRLTLAKVARE VMDTLVRILARCDI VLQEVVDS+GSAIPLLLRE
Sbjct: 13 ANGAQAFRICAFNAQRLTLAKVAREQVMDTLVRILARCDIMVLQEVVDSSGSAIPLLLRE 72
Query: 438 LNRFDXXXXXXXXXXXXXXRGAYKEKYAYIYRSHRTQVLNFYLYPDEDDLFAREPFVGQF 617
LNRFD R Y E Y Y YRSH+TQVL+ Y+Y DEDD+FAREPFV QF
Sbjct: 73 LNRFDGSGPYSTLSSPQLGRSTYMETYVYFYRSHKTQVLSSYVYNDEDDVFAREPFVAQF 132
Query: 618 XXXXXXXXXXXXXXXHTTPKAVEPELKALYEVFLDVSQRWQSEDVILLGDFNADCASLTK 797
HTTPKAVE EL ALY+VFL+VSQ WQS+DVILLGDFNADCASLTK
Sbjct: 133 SLPSNVLPSLVLVPLHTTPKAVEKELNALYDVFLEVSQHWQSKDVILLGDFNADCASLTK 192
Query: 798 KRLDELVLRTQAGFHWAVADGVDTTVRASTHCTYDRIVLHGERLQSLLRNAGA 956
KRLD+L LRT+ GFHW +ADG DTTVRASTHCTYDR+VLHGER +SLL A A
Sbjct: 193 KRLDKLELRTEPGFHWVIADGEDTTVRASTHCTYDRVVLHGERCRSLLHTAAA 245
>ref|NP_006721.1| deoxyribonuclease-1-like 1 precursor [Homo sapiens].
Length = 302
Score = 329 bits (844), Expect = 2e-90
Identities = 167/233 (71%), Positives = 181/233 (77%)
Frame = +3
Query: 258 AGGAEAFRICAFNAQRLTLAKVAREYVMDTLVRILARCDITVLQEVVDSTGSAIPLLLRE 437
A GA+AFRICAFNAQRLTLAKVARE VMDTLVRILARCDI VLQEVVDS+GSAIPLLLRE
Sbjct: 13 ANGAQAFRICAFNAQRLTLAKVAREQVMDTLVRILARCDIMVLQEVVDSSGSAIPLLLRE 72
Query: 438 LNRFDXXXXXXXXXXXXXXRGAYKEKYAYIYRSHRTQVLNFYLYPDEDDLFAREPFVGQF 617
LNRFD R Y E Y Y YRSH+TQVL+ Y+Y DEDD+FAREPFV QF
Sbjct: 73 LNRFDGSGPYSTLSSPQLGRSTYMETYVYFYRSHKTQVLSSYVYNDEDDVFAREPFVAQF 132
Query: 618 XXXXXXXXXXXXXXXHTTPKAVEPELKALYEVFLDVSQRWQSEDVILLGDFNADCASLTK 797
HTTPKAVE EL ALY+VFL+VSQ WQS+DVILLGDFNADCASLTK
Sbjct: 133 SLPSNVLPSLVLVPLHTTPKAVEKELNALYDVFLEVSQHWQSKDVILLGDFNADCASLTK 192
Query: 798 KRLDELVLRTQAGFHWAVADGVDTTVRASTHCTYDRIVLHGERLQSLLRNAGA 956
KRLD+L LRT+ GFHW +ADG DTTVRASTHCTYDR+VLHGER +SLL A A
Sbjct: 193 KRLDKLELRTEPGFHWVIADGEDTTVRASTHCTYDRVVLHGERCRSLLHTAAA 245
>ref|NP_004935.1| deoxyribonuclease gamma precursor [Homo sapiens].
Length = 305
Score = 157 bits (396), Expect = 2e-38
Identities = 85/228 (37%), Positives = 121/228 (53%), Gaps = 5/228 (2%)
Frame = +3
Query: 267 AEAFRICAFNAQRLTLAKVAREYVMDTLVRILARCDITVLQEVVDSTGSAIPLLLRELNR 446
A A RIC+FN + +K + MD +V+++ RCDI ++ E+ DS P+L+ +LNR
Sbjct: 18 ALAMRICSFNVRSFGESKQEDKNAMDVIVKVIKRCDIILVMEIKDSNNRICPILMEKLNR 77
Query: 447 FDXXXXXXXXXXXXXX-RGAYKEKYAYIYRSHRTQVLNFYLYPD----EDDLFAREPFVG 611
R YKE+YA++Y+ V Y Y D + D+F+REPFV
Sbjct: 78 NSRRGITYNYVISSRLGRNTYKEQYAFLYKEKLVSVKRSYHYHDYQDGDADVFSREPFVV 137
Query: 612 QFXXXXXXXXXXXXXXXHTTPKAVEPELKALYEVFLDVSQRWQSEDVILLGDFNADCASL 791
F HTTP+ E+ L EV+ DV RW++E+ I +GDFNA C+ +
Sbjct: 138 WFQSPHTAVKDFVIIPLHTTPETSVKEIDELVEVYTDVKHRWKAENFIFMGDFNAGCSYV 197
Query: 792 TKKRLDELVLRTQAGFHWAVADGVDTTVRASTHCTYDRIVLHGERLQS 935
KK + LRT F W + D DTTV+ ST+C YDRIVL G+ + S
Sbjct: 198 PKKAWKNIRLRTDPRFVWLIGDQEDTTVKKSTNCAYDRIVLRGQEIVS 245
>ref|NP_005214.2| deoxyribonuclease-1 precursor [Homo sapiens].
Length = 282
Score = 137 bits (346), Expect = 1e-32
Identities = 80/228 (35%), Positives = 118/228 (51%), Gaps = 5/228 (2%)
Frame = +3
Query: 264 GAEAFRICAFNAQRLTLAKVAREYVMDTLVRILARCDITVLQEVVDSTGSAIPLLLRELN 443
GA + +I AFN Q K++ ++ +V+IL+R DI ++QEV DS +A+ LL LN
Sbjct: 19 GAVSLKIAAFNIQTFGETKMSNATLVSYIVQILSRYDIALVQEVRDSHLTAVGKLLDNLN 78
Query: 444 RFDXXXXXXXXXXXXXXRGAYKEKYAYIYRSHRTQVLNFYLYPDE-----DDLFAREPFV 608
+ D R +YKE+Y ++YR + ++ Y Y D +D F REP +
Sbjct: 79 Q-DAPDTYHYVVSEPLGRNSYKERYLFVYRPDQVSAVDSYYYDDGCEPCGNDTFNREPAI 137
Query: 609 GQFXXXXXXXXXXXXXXXHTTPKAVEPELKALYEVFLDVSQRWQSEDVILLGDFNADCAS 788
+F H P E+ ALY+V+LDV ++W EDV+L+GDFNA C+
Sbjct: 138 VRFFSRFTEVREFAIVPLHAAPGDAVAEIDALYDVYLDVQEKWGLEDVMLMGDFNAGCSY 197
Query: 789 LTKKRLDELVLRTQAGFHWAVADGVDTTVRASTHCTYDRIVLHGERLQ 932
+ + + L T F W + D DTT THC YDRIV+ G L+
Sbjct: 198 VRPSQWSSIRLWTSPTFQWLIPDSADTTA-TPTHCAYDRIVVAGMLLR 244
>ref|NP_001365.1| deoxyribonuclease-1-like 2 precursor [Homo sapiens].
Length = 299
Score = 135 bits (341), Expect = 4e-32
Identities = 84/253 (33%), Positives = 121/253 (47%), Gaps = 20/253 (7%)
Frame = +3
Query: 258 AGGAEAFRICAFNAQRLTLAKVAREYVMDTLVRILARCDITVLQEVVDSTGSAIPLLLRE 437
A G A RI AFN Q +KV+ + +ILA D+ ++QEV D SA+ L+ +
Sbjct: 16 AAGTAALRIGAFNIQSFGDSKVSDPACGSIIAKILAGYDLALVQEVRDPDLSAVSALMEQ 75
Query: 438 LNRFDXXXXXXXXXXXXXXRGAYKEKYAYIYRSHRTQVLNFYLYPDEDDLFAREPFVGQF 617
+N R YKE Y ++YR V++ YLYPD +D+F+REPFV +F
Sbjct: 76 INSVSEHEYSFVSSQPLG-RDQYKEMYLFVYRKDAVSVVDTYLYPDPEDVFSREPFVVKF 134
Query: 618 XXXXXXXXXXXXXXX--------------------HTTPKAVEPELKALYEVFLDVSQRW 737
H P E+ ALY+V+LDV +W
Sbjct: 135 SAPGTGERAPPLPSRRALTPPPLPAAAQNLVLIPLHAAPHQAVAEIDALYDVYLDVIDKW 194
Query: 738 QSEDVILLGDFNADCASLTKKRLDELVLRTQAGFHWAVADGVDTTVRASTHCTYDRIVLH 917
++D++ LGDFNADC+ + + + LR+ F W + D DTTV ++ C YDRIV
Sbjct: 195 GTDDMLFLGDFNADCSYVRAQDWAAIRLRSSEVFKWLIPDSADTTV-GNSDCAYDRIVAC 253
Query: 918 GERLQSLLRNAGA 956
G RL+ L+ A
Sbjct: 254 GARLRRSLKPQSA 266
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,920,401
Number of extensions: 1285657
Number of successful extensions: 5581
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 5545
Number of HSP's successfully gapped: 8
Length of query: 319
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 216
Effective length of database: 14,901,872
Effective search space: 3218804352
Effective search space used: 3218804352
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013911
(958 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896119.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 313 1e-82
>gb|GL896119.1| Sus scrofa unplaced genomic scaffold chrU_scaffold491
Length = 11183
Score = 313 bits (158), Expect = 1e-82
Identities = 192/209 (91%)
Strand = Plus / Plus
Query: 148 agaactgagcccagctgggacttcaatcaacctggggcaacctggattcctctggagggt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1417 agaactgagcccagctgggacttcaatcaacctggggcaacctggattcctctggagggt 1476
Query: 208 tccagaagcacacatgtggccatgcactgctgnnnnnnnnnnnnnnnnnggccggtgggg 267
|||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1477 tccagaagcacacatgtggccatgcactgctgctcctcctcctcctcctggccggtgggg 1536
Query: 268 ctgaagcctttcgcatttgcgccttcaatgcccagcggctgacacttgccaaggtggcca 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1537 ctgaagcctttcgcatttgcgccttcaatgcccagcggctgacacttgccaaggtggcca 1596
Query: 328 gggaatatgtgatggacaccttagttcgg 356
|||||||||||||||||||||||||||||
Sbjct: 1597 gggaatatgtgatggacaccttagttcgg 1625
Score = 238 bits (120), Expect = 5e-60
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 754 tcctgcttggggacttcaatgctgactgcgcttcactgaccaagaagcgcctggatgagc 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4396 tcctgcttggggacttcaatgctgactgcgcttcactgaccaagaagcgcctggatgagc 4455
Query: 814 tagtccttcggactcaggctggcttccactgggccgtggccgacggggtggacaccacgg 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4456 tagtccttcggactcaggctggcttccactgggccgtggccgacggggtggacaccacgg 4515
Score = 228 bits (115), Expect = 4e-57
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 633 gtccttcccagcctggtgctggtcccgctgcacaccactccgaaagccgtggagccggag 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4125 gtccttcccagcctggtgctggtcccgctgcacaccactccgaaagccgtggagccggag 4184
Query: 693 ctgaaggcgctatacgaagtgtttctggatgtctcccagcgctggcagagcgagg 747
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4185 ctgaaggcgctatacgaagtgtttctggatgtctcccagcgctggcagagcgagg 4239
Score = 202 bits (102), Expect = 3e-49
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 532 ggtcacacaggacacaggtcctgaatttctacttgtaccctgacgaggatgacctctttg 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3777 ggtcacacaggacacaggtcctgaatttctacttgtaccctgacgaggatgacctctttg 3836
Query: 592 cccgggagccctttgtgggccagttctctttgcccagcaagg 633
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3837 cccgggagccctttgtgggccagttctctttgcccagcaagg 3878
Score = 178 bits (90), Expect = 4e-42
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 356 gatcctggctcgctgtgacatcacggtgctgcaggaggtggtagactctactggcagcgc 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1970 gatcctggctcgctgtgacatcacggtgctgcaggaggtggtagactctactggcagcgc 2029
Query: 416 catccccctcctgctgcgagaactcaatcg 445
||||||||||||||||||||||||||||||
Sbjct: 2030 catccccctcctgctgcgagaactcaatcg 2059
Score = 91.7 bits (46), Expect = 7e-16
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 489 ctggggcgtggtgcgtacaaggagaagtatgcgtacatctaccggt 534
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2208 ctggggcgtggtgcgtacaaggagaagtatgcgtacatctaccggt 2253
Score = 60.0 bits (30), Expect = 2e-06
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 929 ccagagtctgctgcgcaacgcaggcgcctt 958
||||||||||||||||||||||||||||||
Sbjct: 4616 ccagagtctgctgcgcaacgcaggcgcctt 4645
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,104,803
Number of extensions: 113
Number of successful extensions: 113
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 8
Length of query: 958
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 937
Effective length of database: 2,808,413,156
Effective search space: 2631483127172
Effective search space used: 2631483127172
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)