Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013916
(1229 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039864.1| protein CWC15 homolog [Bos taurus]. 270 1e-72
>ref|NP_001039864.1| protein CWC15 homolog [Bos taurus].
Length = 231
Score = 270 bits (691), Expect = 1e-72
Identities = 147/231 (63%), Positives = 148/231 (64%)
Frame = +1
Query: 94 MTTAARPTFEPARGGRGKGEGDLSQLSKQYSSRDLPSHTKIKYRQTTQDAPEEVXXXXXX 273
MTTAARPTFEPARGGRGKGEGDLSQLSKQYSSRDLPSHTKIKYRQTTQDAPEEV
Sbjct: 1 MTTAARPTFEPARGGRGKGEGDLSQLSKQYSSRDLPSHTKIKYRQTTQDAPEEVRNRDFR 60
Query: 274 XXXXXXXXXXXXXXXXXXPTREHTTSSSVSKKPRLDQIPAANXXXXXXXXXXXXXXXXXX 453
PTREHTTSSSVSKKPRLDQIPAAN
Sbjct: 61 RELEERERAAAREKNRDRPTREHTTSSSVSKKPRLDQIPAANLDADDPLTDEEDEDEDFE 120
Query: 454 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMENILSGNPLLNLTGPSQP 633
MENILSGNPLLNLTGPSQP
Sbjct: 121 EESDDDDTAALLAELEKIKKERAEEQARKEQEQKAEEERIRMENILSGNPLLNLTGPSQP 180
Query: 634 QSNFKVKRRWDDDVVFKNCAKGVDDQKKDKRFVNDTLRSEFHKKFMEKYIK 786
Q+NFKVKRRWDDDVVFKNCAKGVDDQKKDKRFVNDTLRSEFHKKFMEKYIK
Sbjct: 181 QANFKVKRRWDDDVVFKNCAKGVDDQKKDKRFVNDTLRSEFHKKFMEKYIK 231
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,677,588
Number of extensions: 808323
Number of successful extensions: 2077
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2075
Number of HSP's successfully gapped: 2
Length of query: 409
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 304
Effective length of database: 14,207,134
Effective search space: 4318968736
Effective search space used: 4318968736
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013916
(1229 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533974.1| PREDICTED: similar to RIKEN cDNA 0610040D20 [Ca... 270 2e-72
Alignment gi|XP_533756.1| PREDICTED: similar to RIKEN cDNA 0610040D20 [Ca... 254 1e-67
Alignment gi|XP_848584.1| PREDICTED: similar to RIKEN cDNA 0610040D20 [Ca... 137 2e-32
Alignment gi|XP_855399.1| PREDICTED: similar to RIKEN cDNA 0610040D20 [Ca... 103 3e-22
Alignment gi|XP_533167.2| PREDICTED: similar to FLJ46154 protein [Canis f... 46 1e-12
>ref|XP_533974.1| PREDICTED: similar to RIKEN cDNA 0610040D20 [Canis familiaris].
Length = 231
Score = 270 bits (691), Expect = 2e-72
Identities = 147/231 (63%), Positives = 148/231 (64%)
Frame = +1
Query: 94 MTTAARPTFEPARGGRGKGEGDLSQLSKQYSSRDLPSHTKIKYRQTTQDAPEEVXXXXXX 273
MTTAARPTFEPARGGRGKGEGDLSQLSKQYSSRDLPSHTKIKYRQTTQDAPEEV
Sbjct: 1 MTTAARPTFEPARGGRGKGEGDLSQLSKQYSSRDLPSHTKIKYRQTTQDAPEEVRNRDFR 60
Query: 274 XXXXXXXXXXXXXXXXXXPTREHTTSSSVSKKPRLDQIPAANXXXXXXXXXXXXXXXXXX 453
PTREHTTSSSVSKKPRLDQIPAAN
Sbjct: 61 RELEERERAAAREKNRDRPTREHTTSSSVSKKPRLDQIPAANLDADDPLTDEEDEDEDFE 120
Query: 454 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMENILSGNPLLNLTGPSQP 633
MENILSGNPLLNLTGPSQP
Sbjct: 121 EESDDDDTAALLAELEKIKKERAEEQARKEQEQKAEEERIRMENILSGNPLLNLTGPSQP 180
Query: 634 QSNFKVKRRWDDDVVFKNCAKGVDDQKKDKRFVNDTLRSEFHKKFMEKYIK 786
Q+NFKVKRRWDDDVVFKNCAKGVDDQKKDKRFVNDTLRSEFHKKFMEKYIK
Sbjct: 181 QANFKVKRRWDDDVVFKNCAKGVDDQKKDKRFVNDTLRSEFHKKFMEKYIK 231
>ref|XP_533756.1| PREDICTED: similar to RIKEN cDNA 0610040D20 [Canis familiaris].
Length = 231
Score = 254 bits (649), Expect = 1e-67
Identities = 141/231 (61%), Positives = 143/231 (61%)
Frame = +1
Query: 94 MTTAARPTFEPARGGRGKGEGDLSQLSKQYSSRDLPSHTKIKYRQTTQDAPEEVXXXXXX 273
MTTAARPTFEPARG RGKGEGDLSQLSKQYSSRDL SHTKIKYRQTTQDAPEEV
Sbjct: 1 MTTAARPTFEPARGWRGKGEGDLSQLSKQYSSRDLSSHTKIKYRQTTQDAPEEVRNCDFR 60
Query: 274 XXXXXXXXXXXXXXXXXXPTREHTTSSSVSKKPRLDQIPAANXXXXXXXXXXXXXXXXXX 453
PTREHTTSSSVSKK +DQIPAAN
Sbjct: 61 RELEERERAAAREKNRDRPTREHTTSSSVSKKTWVDQIPAANLDADDPLTDEEDEDEDFE 120
Query: 454 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMENILSGNPLLNLTGPSQP 633
MENILSGNPLLNLTGPSQP
Sbjct: 121 EESDDDDTAALLAELEKIKKERAEEQARKEQEQKAEEERIRMENILSGNPLLNLTGPSQP 180
Query: 634 QSNFKVKRRWDDDVVFKNCAKGVDDQKKDKRFVNDTLRSEFHKKFMEKYIK 786
Q+NFKVKRRWDDDVVFKNCAKGVDDQKKDKRFVNDTLRSEFHKKFM KYIK
Sbjct: 181 QANFKVKRRWDDDVVFKNCAKGVDDQKKDKRFVNDTLRSEFHKKFMGKYIK 231
>ref|XP_848584.1| PREDICTED: similar to RIKEN cDNA 0610040D20 [Canis familiaris].
Length = 138
Score = 137 bits (346), Expect = 2e-32
Identities = 72/102 (70%), Positives = 74/102 (72%)
Frame = +1
Query: 94 MTTAARPTFEPARGGRGKGEGDLSQLSKQYSSRDLPSHTKIKYRQTTQDAPEEVXXXXXX 273
M TAARPTFEPARGGRGKGEGDLSQLSK+YSSRDLPSHTKIKYRQTTQD PEE
Sbjct: 1 MITAARPTFEPARGGRGKGEGDLSQLSKKYSSRDLPSHTKIKYRQTTQDVPEEGHNHDFR 60
Query: 274 XXXXXXXXXXXXXXXXXXPTREHTTSSSVSKKPRLDQIPAAN 399
PTR+HTTSSSVSKKP LDQIPAAN
Sbjct: 61 KELEEREQAAAREKNRDRPTRKHTTSSSVSKKPLLDQIPAAN 102
>ref|XP_855399.1| PREDICTED: similar to RIKEN cDNA 0610040D20 [Canis familiaris].
Length = 161
Score = 103 bits (258), Expect = 3e-22
Identities = 49/52 (94%), Positives = 50/52 (96%)
Frame = +1
Query: 631 PQSNFKVKRRWDDDVVFKNCAKGVDDQKKDKRFVNDTLRSEFHKKFMEKYIK 786
PQ+NFKVKRRWDDDV FKNCAKGVDDQKKDKRFVNDTLRSEFHK FMEKYIK
Sbjct: 111 PQANFKVKRRWDDDV-FKNCAKGVDDQKKDKRFVNDTLRSEFHKTFMEKYIK 161
Score = 67.8 bits (164), Expect = 2e-11
Identities = 37/62 (59%), Positives = 37/62 (59%)
Frame = +1
Query: 214 IKYRQTTQDAPEEVXXXXXXXXXXXXXXXXXXXXXXXXPTREHTTSSSVSKKPRLDQIPA 393
IKYR TTQDAPEEV PTREHTTSSSVSKKPRLDQIPA
Sbjct: 22 IKYRPTTQDAPEEVRNRHFRRELEERERAAAREKNRDRPTREHTTSSSVSKKPRLDQIPA 81
Query: 394 AN 399
AN
Sbjct: 82 AN 83
>ref|XP_533167.2| PREDICTED: similar to FLJ46154 protein [Canis familiaris].
Length = 1122
Score = 46.2 bits (108), Expect(2) = 1e-12
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = +1
Query: 328 PTREHTTSSSVSKKPRLDQIPAAN 399
PTREHTTSS VSKKPRLD+IP AN
Sbjct: 30 PTREHTTSSLVSKKPRLDRIPTAN 53
Score = 45.8 bits (107), Expect(2) = 1e-12
Identities = 21/28 (75%), Positives = 22/28 (78%)
Frame = +2
Query: 239 MPPKRFGTATSGESWKRERELLQEKKIE 322
MP RF T TSG SWKRERELLQEKK +
Sbjct: 1 MPLNRFATVTSGGSWKRERELLQEKKTD 28
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,487,377
Number of extensions: 841728
Number of successful extensions: 2168
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2162
Number of HSP's successfully gapped: 9
Length of query: 409
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 304
Effective length of database: 15,374,224
Effective search space: 4673764096
Effective search space used: 4673764096
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013916
(1229 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003129801.1| PREDICTED: protein CWC15 homolog isoform 2 [... 271 4e-73
Alignment gi|XP_003129803.2| PREDICTED: protein CWC15 homolog isoform 1 [... 150 2e-36
Alignment gi|XP_003129800.2| PREDICTED: protein CWC15 homolog isoform 1 [... 150 2e-36
>ref|XP_003129801.1| PREDICTED: protein CWC15 homolog isoform 2 [Sus scrofa].
Length = 231
Score = 271 bits (694), Expect = 4e-73
Identities = 148/231 (64%), Positives = 148/231 (64%)
Frame = +1
Query: 94 MTTAARPTFEPARGGRGKGEGDLSQLSKQYSSRDLPSHTKIKYRQTTQDAPEEVXXXXXX 273
MTTAARPTFEPARGGRGKGEGDLSQLSKQYSSRDLPSHTKIKYRQTTQDAPEEV
Sbjct: 1 MTTAARPTFEPARGGRGKGEGDLSQLSKQYSSRDLPSHTKIKYRQTTQDAPEEVRNRDFR 60
Query: 274 XXXXXXXXXXXXXXXXXXPTREHTTSSSVSKKPRLDQIPAANXXXXXXXXXXXXXXXXXX 453
PTREHTTSSSVSKKPRLDQIPAAN
Sbjct: 61 RELEERERAAAREKNRDRPTREHTTSSSVSKKPRLDQIPAANLDADDPLTDEEDEDEDFE 120
Query: 454 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMENILSGNPLLNLTGPSQP 633
MENILSGNPLLNLTGPSQP
Sbjct: 121 EESDDDDTAALLAELEKIKKERAEEQARKEQEQKAEEERIRMENILSGNPLLNLTGPSQP 180
Query: 634 QSNFKVKRRWDDDVVFKNCAKGVDDQKKDKRFVNDTLRSEFHKKFMEKYIK 786
QSNFKVKRRWDDDVVFKNCAKGVDDQKKDKRFVNDTLRSEFHKKFMEKYIK
Sbjct: 181 QSNFKVKRRWDDDVVFKNCAKGVDDQKKDKRFVNDTLRSEFHKKFMEKYIK 231
>ref|XP_003129803.2| PREDICTED: protein CWC15 homolog isoform 1 [Sus scrofa].
Length = 229
Score = 150 bits (378), Expect = 2e-36
Identities = 78/102 (76%), Positives = 78/102 (76%)
Frame = +1
Query: 94 MTTAARPTFEPARGGRGKGEGDLSQLSKQYSSRDLPSHTKIKYRQTTQDAPEEVXXXXXX 273
MTTAARPTFEPARGGRGKGEGDLSQLSKQYSSRDLPSHTKIKYRQTTQDAPEEV
Sbjct: 1 MTTAARPTFEPARGGRGKGEGDLSQLSKQYSSRDLPSHTKIKYRQTTQDAPEEVRNRDFR 60
Query: 274 XXXXXXXXXXXXXXXXXXPTREHTTSSSVSKKPRLDQIPAAN 399
PTREHTTSSSVSKKPRLDQIPAAN
Sbjct: 61 RELEERERAAAREKNRDRPTREHTTSSSVSKKPRLDQIPAAN 102
Score = 149 bits (375), Expect = 4e-36
Identities = 70/70 (100%), Positives = 70/70 (100%)
Frame = +1
Query: 577 MENILSGNPLLNLTGPSQPQSNFKVKRRWDDDVVFKNCAKGVDDQKKDKRFVNDTLRSEF 756
MENILSGNPLLNLTGPSQPQSNFKVKRRWDDDVVFKNCAKGVDDQKKDKRFVNDTLRSEF
Sbjct: 160 MENILSGNPLLNLTGPSQPQSNFKVKRRWDDDVVFKNCAKGVDDQKKDKRFVNDTLRSEF 219
Query: 757 HKKFMEKYIK 786
HKKFMEKYIK
Sbjct: 220 HKKFMEKYIK 229
>ref|XP_003129800.2| PREDICTED: protein CWC15 homolog isoform 1 [Sus scrofa].
Length = 229
Score = 150 bits (378), Expect = 2e-36
Identities = 78/102 (76%), Positives = 78/102 (76%)
Frame = +1
Query: 94 MTTAARPTFEPARGGRGKGEGDLSQLSKQYSSRDLPSHTKIKYRQTTQDAPEEVXXXXXX 273
MTTAARPTFEPARGGRGKGEGDLSQLSKQYSSRDLPSHTKIKYRQTTQDAPEEV
Sbjct: 1 MTTAARPTFEPARGGRGKGEGDLSQLSKQYSSRDLPSHTKIKYRQTTQDAPEEVRNRDFR 60
Query: 274 XXXXXXXXXXXXXXXXXXPTREHTTSSSVSKKPRLDQIPAAN 399
PTREHTTSSSVSKKPRLDQIPAAN
Sbjct: 61 RELEERERAAAREKNRDRPTREHTTSSSVSKKPRLDQIPAAN 102
Score = 149 bits (375), Expect = 4e-36
Identities = 70/70 (100%), Positives = 70/70 (100%)
Frame = +1
Query: 577 MENILSGNPLLNLTGPSQPQSNFKVKRRWDDDVVFKNCAKGVDDQKKDKRFVNDTLRSEF 756
MENILSGNPLLNLTGPSQPQSNFKVKRRWDDDVVFKNCAKGVDDQKKDKRFVNDTLRSEF
Sbjct: 160 MENILSGNPLLNLTGPSQPQSNFKVKRRWDDDVVFKNCAKGVDDQKKDKRFVNDTLRSEF 219
Query: 757 HKKFMEKYIK 786
HKKFMEKYIK
Sbjct: 220 HKKFMEKYIK 229
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,586,618
Number of extensions: 517368
Number of successful extensions: 1373
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1368
Number of HSP's successfully gapped: 6
Length of query: 409
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 308
Effective length of database: 8,829,335
Effective search space: 2719435180
Effective search space used: 2719435180
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013916
(1229 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_075642.1| protein CWC15 homolog [Mus musculus]. 150 3e-36
>ref|NP_075642.1| protein CWC15 homolog [Mus musculus].
Length = 229
Score = 150 bits (378), Expect = 3e-36
Identities = 78/102 (76%), Positives = 78/102 (76%)
Frame = +1
Query: 94 MTTAARPTFEPARGGRGKGEGDLSQLSKQYSSRDLPSHTKIKYRQTTQDAPEEVXXXXXX 273
MTTAARPTFEPARGGRGKGEGDLSQLSKQYSSRDLPSHTKIKYRQTTQDAPEEV
Sbjct: 1 MTTAARPTFEPARGGRGKGEGDLSQLSKQYSSRDLPSHTKIKYRQTTQDAPEEVRNRDFR 60
Query: 274 XXXXXXXXXXXXXXXXXXPTREHTTSSSVSKKPRLDQIPAAN 399
PTREHTTSSSVSKKPRLDQIPAAN
Sbjct: 61 RELEERERAAARDKNRDRPTREHTTSSSVSKKPRLDQIPAAN 102
Score = 147 bits (371), Expect = 2e-35
Identities = 68/70 (97%), Positives = 70/70 (100%)
Frame = +1
Query: 577 MENILSGNPLLNLTGPSQPQSNFKVKRRWDDDVVFKNCAKGVDDQKKDKRFVNDTLRSEF 756
MENILSGNPLLNLTGPSQPQ+NFKVKRRWDDDVVFKNCAKG+DDQKKDKRFVNDTLRSEF
Sbjct: 160 MENILSGNPLLNLTGPSQPQANFKVKRRWDDDVVFKNCAKGIDDQKKDKRFVNDTLRSEF 219
Query: 757 HKKFMEKYIK 786
HKKFMEKYIK
Sbjct: 220 HKKFMEKYIK 229
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,209,488
Number of extensions: 711030
Number of successful extensions: 1774
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1772
Number of HSP's successfully gapped: 2
Length of query: 409
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 305
Effective length of database: 12,493,815
Effective search space: 3810613575
Effective search space used: 3810613575
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013916
(1229 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057487.2| protein CWC15 homolog [Homo sapiens]. 150 3e-36
>ref|NP_057487.2| protein CWC15 homolog [Homo sapiens].
Length = 229
Score = 150 bits (378), Expect = 3e-36
Identities = 78/102 (76%), Positives = 78/102 (76%)
Frame = +1
Query: 94 MTTAARPTFEPARGGRGKGEGDLSQLSKQYSSRDLPSHTKIKYRQTTQDAPEEVXXXXXX 273
MTTAARPTFEPARGGRGKGEGDLSQLSKQYSSRDLPSHTKIKYRQTTQDAPEEV
Sbjct: 1 MTTAARPTFEPARGGRGKGEGDLSQLSKQYSSRDLPSHTKIKYRQTTQDAPEEVRNRDFR 60
Query: 274 XXXXXXXXXXXXXXXXXXPTREHTTSSSVSKKPRLDQIPAAN 399
PTREHTTSSSVSKKPRLDQIPAAN
Sbjct: 61 RELEERERAAAREKNRDRPTREHTTSSSVSKKPRLDQIPAAN 102
Score = 147 bits (372), Expect = 2e-35
Identities = 69/70 (98%), Positives = 70/70 (100%)
Frame = +1
Query: 577 MENILSGNPLLNLTGPSQPQSNFKVKRRWDDDVVFKNCAKGVDDQKKDKRFVNDTLRSEF 756
MENILSGNPLLNLTGPSQPQ+NFKVKRRWDDDVVFKNCAKGVDDQKKDKRFVNDTLRSEF
Sbjct: 160 MENILSGNPLLNLTGPSQPQANFKVKRRWDDDVVFKNCAKGVDDQKKDKRFVNDTLRSEF 219
Query: 757 HKKFMEKYIK 786
HKKFMEKYIK
Sbjct: 220 HKKFMEKYIK 229
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,728,418
Number of extensions: 828318
Number of successful extensions: 2120
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2118
Number of HSP's successfully gapped: 2
Length of query: 409
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 304
Effective length of database: 14,835,944
Effective search space: 4510126976
Effective search space used: 4510126976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013916
(1229 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 1005 0.0
Sscrofa_Chr11 161 1e-36
>Sscrofa_Chr09
|| Length = 153670197
Score = 1005 bits (507), Expect = 0.0
Identities = 563/575 (97%), Gaps = 5/575 (0%)
Strand = Plus / Minus
Query: 658 aggtgggatgatgacgttgttttcaagaactgtgcaaaaggtgtggatgatcagaagaaa 717
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 30789778 aggtgggatgatgacgttgttttcaagaactgtgcaaaaggtgtagatgatcagaagaaa 30789719
Query: 718 gacaagagatttgtaaatgatacgctgcgatctgaatttcacaaaaagttcatggagaaa 777
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 30789718 gacaagagatttgtaaatgatacgctacgatctgaatttcacaaaaagttcatggagaaa 30789659
Query: 778 tatattaaatagtacagttttatgtgcttaattaaaggctgtaaaatgtaaaccatctga 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30789658 tatattaaatagtacagttttatgtgcttaattaaaggctgtaaaatgtaaaccatctga 30789599
Query: 838 ctttatttcggtaggtttgtttttctccccctgcctcccaatctaaattgtgtataggct 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30789598 ctttatttcggtaggtttgtttttctccccctgcctcccaatctaaattgtgtataggct 30789539
Query: 898 tccctaattttaagttccaaaatgtctttccctttaacgattctttattcagtgaagact 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30789538 tccctaattttaagttccaaaatgtctttccctttaacgattctttattcagtgaagact 30789479
Query: 958 tgggaattggtttcacccagttttcatctctgactatttccagtcatgtcatttattttg 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30789478 tgggaattggtttcacccagttttcatctctgactatttccagtcatgtcatttattttg 30789419
Query: 1018 aatatgggaaagggaatctgcttgtaataaatatttttaataatctaaatagccaaatct 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30789418 aatatgggaaagggaatctgcttgtaataaatatttttaataatctaaatagccaaatct 30789359
Query: 1078 gtgtcccaactttttgttgaaatgtatgcagcttaataaaacg-tgtgtattttcttttg 1136
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 30789358 gtgtcccaactttttgttgaaatgtatgcagctt-ataaaacgttgtgtattttcttttg 30789300
Query: 1137 tgtattgcatttctttgcgaaataaactttccctctcatttttct-actttgatttaaag 1195
||||||||||||||||||||| ||| |||||| ||||||||||| ||||||||||||||
Sbjct: 30789299 tgtattgcatttctttgcgaattaacctttcctcctcatttttctaactttgatttaaag 30789240
Query: 1196 tcagttatttcatgg-ttcttttc-gtgtcttgaa 1228
||||||| ||||||| |||||||| ||||||||||
Sbjct: 30789239 tcagttaattcatggtttcttttctgtgtcttgaa 30789205
Score = 276 bits (139), Expect = 3e-71
Identities = 139/139 (100%)
Strand = Plus / Minus
Query: 86 cataaaaaatgacgacggcagctaggccaacttttgaacctgcaagaggtgggagaggaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30799275 cataaaaaatgacgacggcagctaggccaacttttgaacctgcaagaggtgggagaggaa 30799216
Query: 146 aaggagaaggtgatttgagccaactctccaagcaatattcaagtagagacctaccctctc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30799215 aaggagaaggtgatttgagccaactctccaagcaatattcaagtagagacctaccctctc 30799156
Query: 206 atacgaagataaaatatag 224
|||||||||||||||||||
Sbjct: 30799155 atacgaagataaaatatag 30799137
Score = 244 bits (123), Expect = 1e-61
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 539 aggaacaagaacagaaggctgaagaagaaaggattcgtatggaaaacattctgagtggaa 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30792793 aggaacaagaacagaaggctgaagaagaaaggattcgtatggaaaacattctgagtggaa 30792734
Query: 599 accctctccttaacctcactggcccatcccagcctcagtccaacttcaaagttaaaagaa 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30792733 accctctccttaacctcactggcccatcccagcctcagtccaacttcaaagttaaaagaa 30792674
Query: 659 ggt 661
|||
Sbjct: 30792673 ggt 30792671
Score = 220 bits (111), Expect = 1e-54
Identities = 114/115 (99%)
Strand = Plus / Minus
Query: 427 gaggaggatgaagatgaagattttgaagaggaaagtgatgatgacgataccgcagctctt 486
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 30796072 gaggaggatgaagatgaagattttgaagaggaaagtgatgatgatgataccgcagctctt 30796013
Query: 487 cttgcagagctggaaaaaatcaagaaagagcgagctgaagagcaggccaggaagg 541
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30796012 cttgcagagctggaaaaaatcaagaaagagcgagctgaagagcaggccaggaagg 30795958
Score = 182 bits (92), Expect = 3e-43
Identities = 92/92 (100%)
Strand = Plus / Minus
Query: 336 agaacatacaacctcctcctcggtgtcaaagaagcctcggttagaccagattcctgccgc 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30797546 agaacatacaacctcctcctcggtgtcaaagaagcctcggttagaccagattcctgccgc 30797487
Query: 396 caacctcgacgcagatgaccctctaacagatg 427
||||||||||||||||||||||||||||||||
Sbjct: 30797486 caacctcgacgcagatgaccctctaacagatg 30797455
Score = 168 bits (85), Expect = 5e-39
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 1 ctgggcgcaggggtttctgggagccgagaatctaagtggtttctgaatgatctccggagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30800600 ctgggcgcaggggtttctgggagccgagaatctaagtggtttctgaatgatctccggagg 30800541
Query: 61 ctggtgcgttcggacctcggccaac 85
|||||||||||||||||||||||||
Sbjct: 30800540 ctggtgcgttcggacctcggccaac 30800516
Score = 101 bits (51), Expect = 9e-19
Identities = 51/51 (100%)
Strand = Plus / Minus
Query: 222 tagacagaccactcaggatgcccccgaagaggttcggaaccgcgacttcag 272
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30798545 tagacagaccactcaggatgcccccgaagaggttcggaaccgcgacttcag 30798495
>Sscrofa_Chr11
|| Length = 87690581
Score = 161 bits (81), Expect = 1e-36
Identities = 441/554 (79%), Gaps = 29/554 (5%)
Strand = Plus / Plus
Query: 519 agctgaagagcaggccaggaaggaacaagaacagaaggctgaagaagaaaggattcgtat 578
|||||| |||||||||||||| ||||| ||||| || ||||||||||| ||||||| |
Sbjct: 24518978 agctgaggagcaggccaggaaagaacatgaacaaaaagctgaagaagataggattcctgc 24519037
Query: 579 ggaaaacattctgagtggaaaccctctccttaacctcactggcccatcccagcctcagtc 638
|||||||||||||||||||||||||||||| | ||| ||| || ||||||||| |
Sbjct: 24519038 agaaaacattctgagtggaaaccctctccttcatttcattggtccctcccagcctagg-- 24519095
Query: 639 caacttcaaagttaaaagaaggtgggatgatgacgttgttttcaagaactgtgcaaaagg 698
||||||||| ||||||||||||||||||| | | |||||||| |||||| |||| |
Sbjct: 24519096 ---gttcaaagttcaaagaaggtgggatgatgatgctattttcaaggactgtgtaaaa-g 24519151
Query: 699 tgtggatg------atcagaagaaagac-aagagatttgtaaatgatacgctgcgatctg 751
||| |||| ||||| |||||| || ||| || | ||| | ||||| |||||
Sbjct: 24519152 tgtagatgccttttggcagaacaaagacaaaaagacaggtgagtgacatgctgcaatctg 24519211
Query: 752 aatttcacaaaaagttcatggagaaatatattaaatagtacagttttatgtgcttaatta 811
|||||||||||| |||||||||||||||||| ||||||||||||| ||||| |||
Sbjct: 24519212 aatttcacaaaatattcatggagaaatatatttaatagtacagtttattgtgc----tta 24519267
Query: 812 aaggctgtaaaatgtaaaccatctgactttatttcggtaggtttgtttttctccccctgc 871
||||| |||||| ||||| |||||||||||||| || | ||| ||||||| ||
Sbjct: 24519268 aaggc--taaaatataaacaatctgactttatttggg--gttttttttttct----cttt 24519319
Query: 872 ctcccaatctaaattgtgtataggcttccctaattttaagttccaaaatgtctttccctt 931
| || | |||||||||| ||||||||||||||||||||||||||| ||||| |
Sbjct: 24519320 cccctcgtttaaattgtgtctaggcttccctaattttaagttccaaa--taaattcccat 24519377
Query: 932 taacgattctttattcagtgaagacttgggaattggtttcac--ccagttttcatctctg 989
| ||| ||||||| | | ||||||||||||||| || ||||||| |||||| |
Sbjct: 24519378 cattgatactttatttgatagggtcttgggaattggtttaacctccagtttccatctcgg 24519437
Query: 990 actatttccagtcatgtcatttattttgaatatgggaaagggaatctgcttgtaataaat 1049
| ||||||||| ||| | | |||||| ||||| |||| |||||||||||||||||||||
Sbjct: 24519438 aatatttccagacatatgttgtatttttaatataggaatgggaatctgcttgtaataaat 24519497
Query: 1050 atttttaataatct 1063
||||||||||||||
Sbjct: 24519498 atttttaataatct 24519511
Score = 85.7 bits (43), Expect = 5e-14
Identities = 75/85 (88%), Gaps = 3/85 (3%)
Strand = Plus / Plus
Query: 123 acctgcaagaggtgggagaggaaaaggagaaggtgatttgagccaactctccaagcaata 182
|||||||| || ||||||||||||||||| ||||||||||||||||||| ||||| |
Sbjct: 24518689 acctgcaatagatgggagaggaaaaggag---gtgatttgagccaactctcagagcaaaa 24518745
Query: 183 ttcaagtagagacctaccctctcat 207
||||||||| ||||||||||||||
Sbjct: 24518746 ttcaagtaggaacctaccctctcat 24518770
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 46,638,407
Number of extensions: 462
Number of successful extensions: 462
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 459
Number of HSP's successfully gapped: 13
Length of query: 1229
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1208
Effective length of database: 2,808,413,156
Effective search space: 3392563092448
Effective search space used: 3392563092448
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)