Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013922
(1045 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_866999.1| PREDICTED: similar to Glycogen phosphorylase, m... 508 e-144
Alignment gi|XP_866988.1| PREDICTED: similar to Glycogen phosphorylase, m... 508 e-144
Alignment gi|XP_866976.1| PREDICTED: similar to Glycogen phosphorylase, m... 508 e-144
Alignment gi|XP_866966.1| PREDICTED: similar to Glycogen phosphorylase, m... 508 e-144
Alignment gi|XP_853123.1| PREDICTED: similar to Glycogen phosphorylase, m... 508 e-144
Alignment gi|XP_866957.1| PREDICTED: similar to Glycogen phosphorylase, m... 483 e-136
Alignment gi|XP_534201.2| PREDICTED: similar to brain glycogen phosphoryl... 464 e-131
Alignment gi|XP_537443.2| PREDICTED: similar to liver glycogen phosphoryl... 416 e-116
Alignment gi|XP_866947.1| PREDICTED: similar to Glycogen phosphorylase, m... 383 e-106
Alignment gi|XP_856520.1| PREDICTED: similar to Glycogen phosphorylase, b... 57 2e-08
>ref|XP_866999.1| PREDICTED: similar to Glycogen phosphorylase, muscle form
(Myophosphorylase) isoform 7 [Canis familiaris].
Length = 836
Score = 508 bits (1309), Expect = e-144
Identities = 243/314 (77%), Positives = 267/314 (85%)
Frame = +2
Query: 104 MAKPLTDGERRKQISVRGLAGLGDVAEVRKSFNRHLHFTLVKDRNVATRRDYYLALAHTV 283
M++PL+D E+RKQISVRGLAG+ +V E++K+FNRHLHFTLVKDRNVAT RDYY ALAHTV
Sbjct: 1 MSRPLSDQEKRKQISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTV 60
Query: 284 RDHLVGRWIRTQQHYYERDPKRIYYLSLEFYMGRTLQNTMVNLGLQNACDEAIYQXXXXX 463
RDHLVGRWIRTQQHYYE+DPKRIYYLSLEFYMGRTLQNTMVNL L+NACDEA YQ
Sbjct: 61 RDHLVGRWIRTQQHYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDM 120
Query: 464 XXXXXXXXXXXXXXXXXXXXXXCFLDSMATLGLAAYGYGIRYEFGIFNQKIVNGWQVEEA 643
CFLDSMATLGLAAYGYGIRYEFGIFNQKI GWQ+EEA
Sbjct: 121 EELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEA 180
Query: 644 DDWLRYGNPWEKARPEYTLPVHFYGRVEHSAEGVRWLDTQVVLAMPYDTPVPGYKNDTVN 823
DDWLRYGNPWEKARPE+ LPVHFYGRVEH+++G +W+DTQVVLAMPYDTPVPGY+N+ VN
Sbjct: 181 DDWLRYGNPWEKARPEFMLPVHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNIVN 240
Query: 824 TMRLWSAKAPNDFKLHDFNVGGYIEAVLDRNLAENISRVLYPTINSLKEKELRLKQEYFV 1003
TMRLWSAKAPNDF L DFNVGGYI+AVLDRNLAENISRVLYP N + KELRLKQEYFV
Sbjct: 241 TMRLWSAKAPNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFV 300
Query: 1004 VGSTLQDVIRRFKS 1045
V +TLQD+IRRFKS
Sbjct: 301 VAATLQDIIRRFKS 314
>ref|XP_866988.1| PREDICTED: similar to Glycogen phosphorylase, muscle form
(Myophosphorylase) isoform 6 [Canis familiaris].
Length = 844
Score = 508 bits (1309), Expect = e-144
Identities = 243/314 (77%), Positives = 267/314 (85%)
Frame = +2
Query: 104 MAKPLTDGERRKQISVRGLAGLGDVAEVRKSFNRHLHFTLVKDRNVATRRDYYLALAHTV 283
M++PL+D E+RKQISVRGLAG+ +V E++K+FNRHLHFTLVKDRNVAT RDYY ALAHTV
Sbjct: 1 MSRPLSDQEKRKQISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTV 60
Query: 284 RDHLVGRWIRTQQHYYERDPKRIYYLSLEFYMGRTLQNTMVNLGLQNACDEAIYQXXXXX 463
RDHLVGRWIRTQQHYYE+DPKRIYYLSLEFYMGRTLQNTMVNL L+NACDEA YQ
Sbjct: 61 RDHLVGRWIRTQQHYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDM 120
Query: 464 XXXXXXXXXXXXXXXXXXXXXXCFLDSMATLGLAAYGYGIRYEFGIFNQKIVNGWQVEEA 643
CFLDSMATLGLAAYGYGIRYEFGIFNQKI GWQ+EEA
Sbjct: 121 EELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEA 180
Query: 644 DDWLRYGNPWEKARPEYTLPVHFYGRVEHSAEGVRWLDTQVVLAMPYDTPVPGYKNDTVN 823
DDWLRYGNPWEKARPE+ LPVHFYGRVEH+++G +W+DTQVVLAMPYDTPVPGY+N+ VN
Sbjct: 181 DDWLRYGNPWEKARPEFMLPVHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNIVN 240
Query: 824 TMRLWSAKAPNDFKLHDFNVGGYIEAVLDRNLAENISRVLYPTINSLKEKELRLKQEYFV 1003
TMRLWSAKAPNDF L DFNVGGYI+AVLDRNLAENISRVLYP N + KELRLKQEYFV
Sbjct: 241 TMRLWSAKAPNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFV 300
Query: 1004 VGSTLQDVIRRFKS 1045
V +TLQD+IRRFKS
Sbjct: 301 VAATLQDIIRRFKS 314
>ref|XP_866976.1| PREDICTED: similar to Glycogen phosphorylase, muscle form
(Myophosphorylase) isoform 5 [Canis familiaris].
Length = 807
Score = 508 bits (1309), Expect = e-144
Identities = 243/314 (77%), Positives = 267/314 (85%)
Frame = +2
Query: 104 MAKPLTDGERRKQISVRGLAGLGDVAEVRKSFNRHLHFTLVKDRNVATRRDYYLALAHTV 283
M++PL+D E+RKQISVRGLAG+ +V E++K+FNRHLHFTLVKDRNVAT RDYY ALAHTV
Sbjct: 1 MSRPLSDQEKRKQISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTV 60
Query: 284 RDHLVGRWIRTQQHYYERDPKRIYYLSLEFYMGRTLQNTMVNLGLQNACDEAIYQXXXXX 463
RDHLVGRWIRTQQHYYE+DPKRIYYLSLEFYMGRTLQNTMVNL L+NACDEA YQ
Sbjct: 61 RDHLVGRWIRTQQHYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDM 120
Query: 464 XXXXXXXXXXXXXXXXXXXXXXCFLDSMATLGLAAYGYGIRYEFGIFNQKIVNGWQVEEA 643
CFLDSMATLGLAAYGYGIRYEFGIFNQKI GWQ+EEA
Sbjct: 121 EELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEA 180
Query: 644 DDWLRYGNPWEKARPEYTLPVHFYGRVEHSAEGVRWLDTQVVLAMPYDTPVPGYKNDTVN 823
DDWLRYGNPWEKARPE+ LPVHFYGRVEH+++G +W+DTQVVLAMPYDTPVPGY+N+ VN
Sbjct: 181 DDWLRYGNPWEKARPEFMLPVHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNIVN 240
Query: 824 TMRLWSAKAPNDFKLHDFNVGGYIEAVLDRNLAENISRVLYPTINSLKEKELRLKQEYFV 1003
TMRLWSAKAPNDF L DFNVGGYI+AVLDRNLAENISRVLYP N + KELRLKQEYFV
Sbjct: 241 TMRLWSAKAPNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFV 300
Query: 1004 VGSTLQDVIRRFKS 1045
V +TLQD+IRRFKS
Sbjct: 301 VAATLQDIIRRFKS 314
>ref|XP_866966.1| PREDICTED: similar to Glycogen phosphorylase, muscle form
(Myophosphorylase) isoform 4 [Canis familiaris].
Length = 834
Score = 508 bits (1309), Expect = e-144
Identities = 243/314 (77%), Positives = 267/314 (85%)
Frame = +2
Query: 104 MAKPLTDGERRKQISVRGLAGLGDVAEVRKSFNRHLHFTLVKDRNVATRRDYYLALAHTV 283
M++PL+D E+RKQISVRGLAG+ +V E++K+FNRHLHFTLVKDRNVAT RDYY ALAHTV
Sbjct: 1 MSRPLSDQEKRKQISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTV 60
Query: 284 RDHLVGRWIRTQQHYYERDPKRIYYLSLEFYMGRTLQNTMVNLGLQNACDEAIYQXXXXX 463
RDHLVGRWIRTQQHYYE+DPKRIYYLSLEFYMGRTLQNTMVNL L+NACDEA YQ
Sbjct: 61 RDHLVGRWIRTQQHYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDM 120
Query: 464 XXXXXXXXXXXXXXXXXXXXXXCFLDSMATLGLAAYGYGIRYEFGIFNQKIVNGWQVEEA 643
CFLDSMATLGLAAYGYGIRYEFGIFNQKI GWQ+EEA
Sbjct: 121 EELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEA 180
Query: 644 DDWLRYGNPWEKARPEYTLPVHFYGRVEHSAEGVRWLDTQVVLAMPYDTPVPGYKNDTVN 823
DDWLRYGNPWEKARPE+ LPVHFYGRVEH+++G +W+DTQVVLAMPYDTPVPGY+N+ VN
Sbjct: 181 DDWLRYGNPWEKARPEFMLPVHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNIVN 240
Query: 824 TMRLWSAKAPNDFKLHDFNVGGYIEAVLDRNLAENISRVLYPTINSLKEKELRLKQEYFV 1003
TMRLWSAKAPNDF L DFNVGGYI+AVLDRNLAENISRVLYP N + KELRLKQEYFV
Sbjct: 241 TMRLWSAKAPNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFV 300
Query: 1004 VGSTLQDVIRRFKS 1045
V +TLQD+IRRFKS
Sbjct: 301 VAATLQDIIRRFKS 314
>ref|XP_853123.1| PREDICTED: similar to Glycogen phosphorylase, muscle form
(Myophosphorylase) isoform 1 [Canis familiaris].
Length = 842
Score = 508 bits (1309), Expect = e-144
Identities = 243/314 (77%), Positives = 267/314 (85%)
Frame = +2
Query: 104 MAKPLTDGERRKQISVRGLAGLGDVAEVRKSFNRHLHFTLVKDRNVATRRDYYLALAHTV 283
M++PL+D E+RKQISVRGLAG+ +V E++K+FNRHLHFTLVKDRNVAT RDYY ALAHTV
Sbjct: 1 MSRPLSDQEKRKQISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTV 60
Query: 284 RDHLVGRWIRTQQHYYERDPKRIYYLSLEFYMGRTLQNTMVNLGLQNACDEAIYQXXXXX 463
RDHLVGRWIRTQQHYYE+DPKRIYYLSLEFYMGRTLQNTMVNL L+NACDEA YQ
Sbjct: 61 RDHLVGRWIRTQQHYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDM 120
Query: 464 XXXXXXXXXXXXXXXXXXXXXXCFLDSMATLGLAAYGYGIRYEFGIFNQKIVNGWQVEEA 643
CFLDSMATLGLAAYGYGIRYEFGIFNQKI GWQ+EEA
Sbjct: 121 EELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEA 180
Query: 644 DDWLRYGNPWEKARPEYTLPVHFYGRVEHSAEGVRWLDTQVVLAMPYDTPVPGYKNDTVN 823
DDWLRYGNPWEKARPE+ LPVHFYGRVEH+++G +W+DTQVVLAMPYDTPVPGY+N+ VN
Sbjct: 181 DDWLRYGNPWEKARPEFMLPVHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNIVN 240
Query: 824 TMRLWSAKAPNDFKLHDFNVGGYIEAVLDRNLAENISRVLYPTINSLKEKELRLKQEYFV 1003
TMRLWSAKAPNDF L DFNVGGYI+AVLDRNLAENISRVLYP N + KELRLKQEYFV
Sbjct: 241 TMRLWSAKAPNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFV 300
Query: 1004 VGSTLQDVIRRFKS 1045
V +TLQD+IRRFKS
Sbjct: 301 VAATLQDIIRRFKS 314
>ref|XP_866957.1| PREDICTED: similar to Glycogen phosphorylase, muscle form
(Myophosphorylase) isoform 3 [Canis familiaris].
Length = 832
Score = 483 bits (1244), Expect = e-136
Identities = 236/314 (75%), Positives = 261/314 (83%)
Frame = +2
Query: 104 MAKPLTDGERRKQISVRGLAGLGDVAEVRKSFNRHLHFTLVKDRNVATRRDYYLALAHTV 283
M++PL+D E+RKQISVRGLAG+ +V E++K+FNRHLHFTLVKDRNVAT RDYY ALAHTV
Sbjct: 1 MSRPLSDQEKRKQISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTV 60
Query: 284 RDHLVGRWIRTQQHYYERDPKRIYYLSLEFYMGRTLQNTMVNLGLQNACDEAIYQXXXXX 463
RDHLVGRWIRTQQHYYE+DPKRIYYLSLEFYMGRTLQNTMVNL L+NACDEA YQ
Sbjct: 61 RDHLVGRWIRTQQHYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDM 120
Query: 464 XXXXXXXXXXXXXXXXXXXXXXCFLDSMATLGLAAYGYGIRYEFGIFNQKIVNGWQVEEA 643
L +A GLAAYGYGIRYEFGIFNQKI GWQ+EEA
Sbjct: 121 EELEEIEEDAGLGNGG--------LGRLA--GLAAYGYGIRYEFGIFNQKICGGWQMEEA 170
Query: 644 DDWLRYGNPWEKARPEYTLPVHFYGRVEHSAEGVRWLDTQVVLAMPYDTPVPGYKNDTVN 823
DDWLRYGNPWEKARPE+ LPVHFYGRVEH+++G +W+DTQVVLAMPYDTPVPGY+N+ VN
Sbjct: 171 DDWLRYGNPWEKARPEFMLPVHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNIVN 230
Query: 824 TMRLWSAKAPNDFKLHDFNVGGYIEAVLDRNLAENISRVLYPTINSLKEKELRLKQEYFV 1003
TMRLWSAKAPNDF L DFNVGGYI+AVLDRNLAENISRVLYP N + KELRLKQEYFV
Sbjct: 231 TMRLWSAKAPNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFV 290
Query: 1004 VGSTLQDVIRRFKS 1045
V +TLQD+IRRFKS
Sbjct: 291 VAATLQDIIRRFKS 304
>ref|XP_534201.2| PREDICTED: similar to brain glycogen phosphorylase isoform 1 [Canis
familiaris].
Length = 809
Score = 464 bits (1194), Expect = e-131
Identities = 237/314 (75%), Positives = 249/314 (79%)
Frame = +2
Query: 104 MAKPLTDGERRKQISVRGLAGLGDVAEVRKSFNRHLHFTLVKDRNVATRRDYYLALAHTV 283
MA PLT ERR+QISVRGLAGLGDVAEVR+SFNRHLHFTLVKDRNVAT RDY+ ALAHTV
Sbjct: 1 MAAPLTAFERRRQISVRGLAGLGDVAEVRRSFNRHLHFTLVKDRNVATPRDYFFALAHTV 60
Query: 284 RDHLVGRWIRTQQHYYERDPKRIYYLSLEFYMGRTLQNTMVNLGLQNACDEAIYQXXXXX 463
RDHLVGRWIRTQQHYYERDPK L L+ L+ + GL N
Sbjct: 61 RDHLVGRWIRTQQHYYERDPK----LGLDL---EELEEIEEDAGLGNG------------ 101
Query: 464 XXXXXXXXXXXXXXXXXXXXXXCFLDSMATLGLAAYGYGIRYEFGIFNQKIVNGWQVEEA 643
CFLDSMATLGLAAYGYGIRYEFGIFNQKIVNGWQVEEA
Sbjct: 102 ---------------GLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKIVNGWQVEEA 146
Query: 644 DDWLRYGNPWEKARPEYTLPVHFYGRVEHSAEGVRWLDTQVVLAMPYDTPVPGYKNDTVN 823
DDWLRYGNPWEKARPEY LPVHFYGRVEH+ EGVRWLDTQVVLAMPYDTPVPGY+N+TVN
Sbjct: 147 DDWLRYGNPWEKARPEYMLPVHFYGRVEHTPEGVRWLDTQVVLAMPYDTPVPGYRNNTVN 206
Query: 824 TMRLWSAKAPNDFKLHDFNVGGYIEAVLDRNLAENISRVLYPTINSLKEKELRLKQEYFV 1003
TMRLWSAKAPNDFKLHDFNVGGYIEAVLDRNLAENISRVLYP N + KELRLKQEYFV
Sbjct: 207 TMRLWSAKAPNDFKLHDFNVGGYIEAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFV 266
Query: 1004 VGSTLQDVIRRFKS 1045
V +TLQD+IRRFKS
Sbjct: 267 VAATLQDIIRRFKS 280
>ref|XP_537443.2| PREDICTED: similar to liver glycogen phosphorylase isoform 1 [Canis
familiaris].
Length = 822
Score = 416 bits (1070), Expect = e-116
Identities = 211/319 (66%), Positives = 240/319 (75%), Gaps = 5/319 (1%)
Frame = +2
Query: 104 MAKPLTDGERRKQISVRGLAGLGDVAEVRKSFNRHLHFTLVKDRNVATRRDYYLALAHTV 283
MAKPLTD E+R+QIS+RG+ G+ +VAE++K FNRHLHFTLVKDRNVAT RDY+ ALAHTV
Sbjct: 1 MAKPLTDQEKRRQISIRGIVGVENVAELKKGFNRHLHFTLVKDRNVATPRDYFFALAHTV 60
Query: 284 RDHLVGRWIRTQQHYYERDPKRIYYLSLEFYMGRTLQNTMVNLGLQNACDEAIYQXXXXX 463
RDHLVGRWIRTQQHYYE+ PK L L+ L+ + GL N
Sbjct: 61 RDHLVGRWIRTQQHYYEKCPK----LGLDM---EELEEIEEDAGLGNG------------ 101
Query: 464 XXXXXXXXXXXXXXXXXXXXXXCFLDSMATLGLAAYGYGIRYEFGIFNQKIVNGWQVEEA 643
CFLDSMATLGLAAYGYGIRYE+GIFNQKI +GWQ+EEA
Sbjct: 102 ---------------GLGRLAACFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQIEEA 146
Query: 644 DDWLRYGNPWEKARPEYTLPVHFYGRVEHSAEGVRWLDTQV-----VLAMPYDTPVPGYK 808
DDWLR+GNPWEKARPE+ LPVHFYG+VEH+ G +W+DTQV VLA+PYDTPVPGY
Sbjct: 147 DDWLRHGNPWEKARPEFMLPVHFYGKVEHTNTGTKWIDTQVFRVLVVLALPYDTPVPGYM 206
Query: 809 NDTVNTMRLWSAKAPNDFKLHDFNVGGYIEAVLDRNLAENISRVLYPTINSLKEKELRLK 988
N+TVNTMRLWSA+APNDF L DFNVG YI+AVLDRNLAENISRVLYP N + KELRLK
Sbjct: 207 NNTVNTMRLWSARAPNDFNLRDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLK 266
Query: 989 QEYFVVGSTLQDVIRRFKS 1045
QEYFVV +TLQDVIRRFK+
Sbjct: 267 QEYFVVAATLQDVIRRFKA 285
>ref|XP_866947.1| PREDICTED: similar to Glycogen phosphorylase, muscle form
(Myophosphorylase) isoform 2 [Canis familiaris].
Length = 315
Score = 383 bits (983), Expect = e-106
Identities = 179/237 (75%), Positives = 199/237 (83%)
Frame = +2
Query: 104 MAKPLTDGERRKQISVRGLAGLGDVAEVRKSFNRHLHFTLVKDRNVATRRDYYLALAHTV 283
M++PL+D E+RKQISVRGLAG+ +V E++K+FNRHLHFTLVKDRNVAT RDYY ALAHTV
Sbjct: 1 MSRPLSDQEKRKQISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTV 60
Query: 284 RDHLVGRWIRTQQHYYERDPKRIYYLSLEFYMGRTLQNTMVNLGLQNACDEAIYQXXXXX 463
RDHLVGRWIRTQQHYYE+DPKRIYYLSLEFYMGRTLQNTMVNL L+NACDEA YQ
Sbjct: 61 RDHLVGRWIRTQQHYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDM 120
Query: 464 XXXXXXXXXXXXXXXXXXXXXXCFLDSMATLGLAAYGYGIRYEFGIFNQKIVNGWQVEEA 643
CFLDSMATLGLAAYGYGIRYEFGIFNQKI GWQ+EEA
Sbjct: 121 EELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEA 180
Query: 644 DDWLRYGNPWEKARPEYTLPVHFYGRVEHSAEGVRWLDTQVVLAMPYDTPVPGYKND 814
DDWLRYGNPWEKARPE+ LPVHFYGRVEH+++G +W+DTQVVLAMPYDTPVPGY+N+
Sbjct: 181 DDWLRYGNPWEKARPEFMLPVHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNN 237
>ref|XP_856520.1| PREDICTED: similar to Glycogen phosphorylase, brain form isoform 2
[Canis familiaris].
Length = 553
Score = 57.4 bits (137), Expect = 2e-08
Identities = 26/34 (76%), Positives = 27/34 (79%)
Frame = +3
Query: 621 MAGRWRRPMTGCATATPGRKLGPSTRCRCTSTGE 722
MAGRWRR M GCA ATPGR+ GPST CTSTGE
Sbjct: 1 MAGRWRRQMIGCAMATPGRRHGPSTCFLCTSTGE 34
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,413,935
Number of extensions: 842990
Number of successful extensions: 3469
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 3445
Number of HSP's successfully gapped: 13
Length of query: 348
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 244
Effective length of database: 15,407,560
Effective search space: 3759444640
Effective search space used: 3759444640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013922
(1045 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030347.1| glycogen phosphorylase, brain form [Bos taur... 560 e-159
Alignment gi|NP_786980.1| glycogen phosphorylase, muscle form [Bos taurus]. 508 e-144
Alignment gi|NP_001068671.1| glycogen phosphorylase, liver form [Bos taur... 497 e-141
>ref|NP_001030347.1| glycogen phosphorylase, brain form [Bos taurus].
Length = 843
Score = 560 bits (1442), Expect = e-159
Identities = 275/314 (87%), Positives = 278/314 (88%)
Frame = +2
Query: 104 MAKPLTDGERRKQISVRGLAGLGDVAEVRKSFNRHLHFTLVKDRNVATRRDYYLALAHTV 283
MAKPLTDGERRKQISVRGLAGLGDVAEVRKSFNRHLHFTLVKDRNVATRRDYYLALAHTV
Sbjct: 1 MAKPLTDGERRKQISVRGLAGLGDVAEVRKSFNRHLHFTLVKDRNVATRRDYYLALAHTV 60
Query: 284 RDHLVGRWIRTQQHYYERDPKRIYYLSLEFYMGRTLQNTMVNLGLQNACDEAIYQXXXXX 463
RDHLVGRWIRTQQ YYERDPKRIYYLSLEFYMGRTLQNTMVNLGLQNACDEAIYQ
Sbjct: 61 RDHLVGRWIRTQQRYYERDPKRIYYLSLEFYMGRTLQNTMVNLGLQNACDEAIYQLGLDL 120
Query: 464 XXXXXXXXXXXXXXXXXXXXXXCFLDSMATLGLAAYGYGIRYEFGIFNQKIVNGWQVEEA 643
CFLDSMATLGLAAYGYGIRYEFGIFNQKIVNGWQVEEA
Sbjct: 121 EELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKIVNGWQVEEA 180
Query: 644 DDWLRYGNPWEKARPEYTLPVHFYGRVEHSAEGVRWLDTQVVLAMPYDTPVPGYKNDTVN 823
DDWLRYGNPWEKARPEY LPVHFYGRVEHS EGVRWLDTQVVLAMPYDTPVPGYKNDTVN
Sbjct: 181 DDWLRYGNPWEKARPEYMLPVHFYGRVEHSPEGVRWLDTQVVLAMPYDTPVPGYKNDTVN 240
Query: 824 TMRLWSAKAPNDFKLHDFNVGGYIEAVLDRNLAENISRVLYPTINSLKEKELRLKQEYFV 1003
TMRLWSAKAPNDFKLHDFNVGGYIEAVLDRNLAENISRVLYP N + KELRLKQEYFV
Sbjct: 241 TMRLWSAKAPNDFKLHDFNVGGYIEAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFV 300
Query: 1004 VGSTLQDVIRRFKS 1045
V +TLQD+IRRFKS
Sbjct: 301 VAATLQDIIRRFKS 314
>ref|NP_786980.1| glycogen phosphorylase, muscle form [Bos taurus].
Length = 842
Score = 508 bits (1309), Expect = e-144
Identities = 243/314 (77%), Positives = 268/314 (85%)
Frame = +2
Query: 104 MAKPLTDGERRKQISVRGLAGLGDVAEVRKSFNRHLHFTLVKDRNVATRRDYYLALAHTV 283
M++PLTD E+RKQISVRGLAG+ +V E++K+FNRHLHFTLVKDRNVAT RDYY ALA+TV
Sbjct: 1 MSRPLTDQEKRKQISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAYTV 60
Query: 284 RDHLVGRWIRTQQHYYERDPKRIYYLSLEFYMGRTLQNTMVNLGLQNACDEAIYQXXXXX 463
RDHLVGRWIRTQQHYYE+DPKRIYYLSLEFY+GRTLQNTMVNL L+NACDEA YQ
Sbjct: 61 RDHLVGRWIRTQQHYYEKDPKRIYYLSLEFYIGRTLQNTMVNLALENACDEATYQLGLDM 120
Query: 464 XXXXXXXXXXXXXXXXXXXXXXCFLDSMATLGLAAYGYGIRYEFGIFNQKIVNGWQVEEA 643
CFLDSMATLGLAAYGYGIRYEFGIFNQKI GWQ+EEA
Sbjct: 121 EELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKISGGWQMEEA 180
Query: 644 DDWLRYGNPWEKARPEYTLPVHFYGRVEHSAEGVRWLDTQVVLAMPYDTPVPGYKNDTVN 823
DDWLRYGNPWEKARPE+TLPVHFYGRVEH+++G +W+DTQVVLAMPYDTPVPGY+N+ VN
Sbjct: 181 DDWLRYGNPWEKARPEFTLPVHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVN 240
Query: 824 TMRLWSAKAPNDFKLHDFNVGGYIEAVLDRNLAENISRVLYPTINSLKEKELRLKQEYFV 1003
TMRLWSAKAPNDF L DFNVGGYI+AVLDRNLAENISRVLYP N + KELRLKQEYFV
Sbjct: 241 TMRLWSAKAPNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFV 300
Query: 1004 VGSTLQDVIRRFKS 1045
V +TLQD+IRRFKS
Sbjct: 301 VAATLQDIIRRFKS 314
>ref|NP_001068671.1| glycogen phosphorylase, liver form [Bos taurus].
Length = 851
Score = 497 bits (1279), Expect = e-141
Identities = 237/314 (75%), Positives = 264/314 (84%)
Frame = +2
Query: 104 MAKPLTDGERRKQISVRGLAGLGDVAEVRKSFNRHLHFTLVKDRNVATRRDYYLALAHTV 283
MAKPLTD E+R+QIS+RG+ G+ +VAE++K FNRHLHFTLVKDRNVAT RDY+ ALAHTV
Sbjct: 1 MAKPLTDQEKRRQISIRGIVGVENVAELKKGFNRHLHFTLVKDRNVATPRDYFFALAHTV 60
Query: 284 RDHLVGRWIRTQQHYYERDPKRIYYLSLEFYMGRTLQNTMVNLGLQNACDEAIYQXXXXX 463
RDHLVGRWIRTQQ+YYE+ PKR+YYLSLEFYMGRTLQNTM+NLGLQNACDEAIYQ
Sbjct: 61 RDHLVGRWIRTQQYYYEKCPKRVYYLSLEFYMGRTLQNTMINLGLQNACDEAIYQLGLDM 120
Query: 464 XXXXXXXXXXXXXXXXXXXXXXCFLDSMATLGLAAYGYGIRYEFGIFNQKIVNGWQVEEA 643
CFLDSMATLGLAAYGYGIRYE+GIFNQKI +GWQ+EEA
Sbjct: 121 EELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQIEEA 180
Query: 644 DDWLRYGNPWEKARPEYTLPVHFYGRVEHSAEGVRWLDTQVVLAMPYDTPVPGYKNDTVN 823
DDWLR+GNPWEKARPE+ LPVHFYGRVEH+ G +W DTQVVLA+PYDTPVPGY N+TVN
Sbjct: 181 DDWLRHGNPWEKARPEFMLPVHFYGRVEHTEAGTKWTDTQVVLALPYDTPVPGYLNNTVN 240
Query: 824 TMRLWSAKAPNDFKLHDFNVGGYIEAVLDRNLAENISRVLYPTINSLKEKELRLKQEYFV 1003
TMRLWSA+APNDF L DFNVG YI+AVLDRNLAENISRVLYP N + KELRLKQEYFV
Sbjct: 241 TMRLWSARAPNDFNLRDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFV 300
Query: 1004 VGSTLQDVIRRFKS 1045
V +TLQDVIRRFK+
Sbjct: 301 VAATLQDVIRRFKA 314
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,916,415
Number of extensions: 812141
Number of successful extensions: 3305
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3295
Number of HSP's successfully gapped: 3
Length of query: 348
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 245
Effective length of database: 14,273,310
Effective search space: 3496960950
Effective search space used: 3496960950
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013922
(1045 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122636.2| PREDICTED: glycogen phosphorylase, muscle fo... 506 e-144
Alignment gi|NP_001116644.1| glycogen phosphorylase, liver form [Sus scro... 496 e-141
Alignment gi|XP_003353832.1| PREDICTED: glycogen phosphorylase, muscle fo... 434 e-122
Alignment gi|XP_003362130.1| PREDICTED: glycogen phosphorylase, brain for... 344 4e-95
Alignment gi|XP_003353833.1| PREDICTED: glycogen phosphorylase, muscle fo... 259 2e-69
>ref|XP_003122636.2| PREDICTED: glycogen phosphorylase, muscle form isoform 1 [Sus
scrofa].
Length = 842
Score = 506 bits (1304), Expect = e-144
Identities = 243/314 (77%), Positives = 266/314 (84%)
Frame = +2
Query: 104 MAKPLTDGERRKQISVRGLAGLGDVAEVRKSFNRHLHFTLVKDRNVATRRDYYLALAHTV 283
M++PLTD E+RKQISVRGLAG+ +VAE++K+FNRHLHFTLVKDRNVA RDYY ALA+TV
Sbjct: 1 MSRPLTDQEKRKQISVRGLAGVENVAELKKNFNRHLHFTLVKDRNVANARDYYFALAYTV 60
Query: 284 RDHLVGRWIRTQQHYYERDPKRIYYLSLEFYMGRTLQNTMVNLGLQNACDEAIYQXXXXX 463
RDHLVGRWIRTQQHYYE+DPKRIYYLSLEFYMGRTLQNTMVNL L+NACDEA YQ
Sbjct: 61 RDHLVGRWIRTQQHYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDM 120
Query: 464 XXXXXXXXXXXXXXXXXXXXXXCFLDSMATLGLAAYGYGIRYEFGIFNQKIVNGWQVEEA 643
CFLDSMATLGLAAYGYGIRYEFGIFNQKI GWQ+EEA
Sbjct: 121 EELEEMEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKITGGWQMEEA 180
Query: 644 DDWLRYGNPWEKARPEYTLPVHFYGRVEHSAEGVRWLDTQVVLAMPYDTPVPGYKNDTVN 823
DDWLRYGN WEKARPE+TLPVHFYGRVEH+ +G +W+DTQVVLAMPYDTPVPGY+N+ VN
Sbjct: 181 DDWLRYGNAWEKARPEFTLPVHFYGRVEHTNQGAKWVDTQVVLAMPYDTPVPGYRNNVVN 240
Query: 824 TMRLWSAKAPNDFKLHDFNVGGYIEAVLDRNLAENISRVLYPTINSLKEKELRLKQEYFV 1003
TMRLWSAKAPNDF L DFNVGGYI+AVLDRNLAENISRVLYP N + KELRLKQEYFV
Sbjct: 241 TMRLWSAKAPNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFV 300
Query: 1004 VGSTLQDVIRRFKS 1045
V +TLQD+IRRFKS
Sbjct: 301 VAATLQDIIRRFKS 314
>ref|NP_001116644.1| glycogen phosphorylase, liver form [Sus scrofa].
Length = 854
Score = 496 bits (1277), Expect = e-141
Identities = 236/314 (75%), Positives = 265/314 (84%)
Frame = +2
Query: 104 MAKPLTDGERRKQISVRGLAGLGDVAEVRKSFNRHLHFTLVKDRNVATRRDYYLALAHTV 283
MAKPLTD E+R+QIS+RG+ G+ +VAE++K FNRHLHFTLVKDRNVAT RDY+ ALAHTV
Sbjct: 1 MAKPLTDQEKRRQISIRGIVGVENVAELKKGFNRHLHFTLVKDRNVATPRDYFFALAHTV 60
Query: 284 RDHLVGRWIRTQQHYYERDPKRIYYLSLEFYMGRTLQNTMVNLGLQNACDEAIYQXXXXX 463
RDHLVGRWIRTQQ+YYE+ PKR+YYLSLEFY+GRTLQNTM+NLGLQNACDEAIYQ
Sbjct: 61 RDHLVGRWIRTQQYYYEKCPKRVYYLSLEFYIGRTLQNTMINLGLQNACDEAIYQLGLDM 120
Query: 464 XXXXXXXXXXXXXXXXXXXXXXCFLDSMATLGLAAYGYGIRYEFGIFNQKIVNGWQVEEA 643
CFLDSMATLGLAAYGYGIRYE+GIFNQKI +GWQ+EEA
Sbjct: 121 EELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQIEEA 180
Query: 644 DDWLRYGNPWEKARPEYTLPVHFYGRVEHSAEGVRWLDTQVVLAMPYDTPVPGYKNDTVN 823
DDWLR+GNPWEKARPE+ LPVHFYGRVEH+ G +W+DTQVVLA+PYDTPVPGY N+TVN
Sbjct: 181 DDWLRHGNPWEKARPEFMLPVHFYGRVEHTEAGTKWVDTQVVLALPYDTPVPGYLNNTVN 240
Query: 824 TMRLWSAKAPNDFKLHDFNVGGYIEAVLDRNLAENISRVLYPTINSLKEKELRLKQEYFV 1003
TMRLWSA+APNDF L DFNVG YI+AVLDRNLAENISRVLYP N + KELRLKQEYFV
Sbjct: 241 TMRLWSARAPNDFNLRDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFV 300
Query: 1004 VGSTLQDVIRRFKS 1045
V +TLQDVIRRFK+
Sbjct: 301 VAATLQDVIRRFKA 314
>ref|XP_003353832.1| PREDICTED: glycogen phosphorylase, muscle form isoform 2 [Sus
scrofa].
Length = 808
Score = 434 bits (1117), Expect = e-122
Identities = 218/314 (69%), Positives = 243/314 (77%)
Frame = +2
Query: 104 MAKPLTDGERRKQISVRGLAGLGDVAEVRKSFNRHLHFTLVKDRNVATRRDYYLALAHTV 283
M++PLTD E+RKQISVRGLAG+ +VAE++K+FNRHLHFTLVKDRNVA RDYY ALA+TV
Sbjct: 1 MSRPLTDQEKRKQISVRGLAGVENVAELKKNFNRHLHFTLVKDRNVANARDYYFALAYTV 60
Query: 284 RDHLVGRWIRTQQHYYERDPKRIYYLSLEFYMGRTLQNTMVNLGLQNACDEAIYQXXXXX 463
RDHLVGRWIRTQQHYYE+DPK L L+ L+ + GL N
Sbjct: 61 RDHLVGRWIRTQQHYYEKDPK----LGLDM---EELEEMEEDAGLGNG------------ 101
Query: 464 XXXXXXXXXXXXXXXXXXXXXXCFLDSMATLGLAAYGYGIRYEFGIFNQKIVNGWQVEEA 643
CFLDSMATLGLAAYGYGIRYEFGIFNQKI GWQ+EEA
Sbjct: 102 ---------------GLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKITGGWQMEEA 146
Query: 644 DDWLRYGNPWEKARPEYTLPVHFYGRVEHSAEGVRWLDTQVVLAMPYDTPVPGYKNDTVN 823
DDWLRYGN WEKARPE+TLPVHFYGRVEH+ +G +W+DTQVVLAMPYDTPVPGY+N+ VN
Sbjct: 147 DDWLRYGNAWEKARPEFTLPVHFYGRVEHTNQGAKWVDTQVVLAMPYDTPVPGYRNNVVN 206
Query: 824 TMRLWSAKAPNDFKLHDFNVGGYIEAVLDRNLAENISRVLYPTINSLKEKELRLKQEYFV 1003
TMRLWSAKAPNDF L DFNVGGYI+AVLDRNLAENISRVLYP N + KELRLKQEYFV
Sbjct: 207 TMRLWSAKAPNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFV 266
Query: 1004 VGSTLQDVIRRFKS 1045
V +TLQD+IRRFKS
Sbjct: 267 VAATLQDIIRRFKS 280
>ref|XP_003362130.1| PREDICTED: glycogen phosphorylase, brain form-like, partial [Sus
scrofa].
Length = 725
Score = 344 bits (883), Expect = 4e-95
Identities = 164/172 (95%), Positives = 166/172 (96%)
Frame = +2
Query: 530 CFLDSMATLGLAAYGYGIRYEFGIFNQKIVNGWQVEEADDWLRYGNPWEKARPEYTLPVH 709
CFLDSMATLGLAAYGYGIRYEFGIFNQKIVNGWQVEEADDWLRYGNPWEKARPEYTLPVH
Sbjct: 28 CFLDSMATLGLAAYGYGIRYEFGIFNQKIVNGWQVEEADDWLRYGNPWEKARPEYTLPVH 87
Query: 710 FYGRVEHSAEGVRWLDTQVVLAMPYDTPVPGYKNDTVNTMRLWSAKAPNDFKLHDFNVGG 889
FYGRVEHSAEGVRWLDTQVVLAMPYDTPVPGYKNDTVNTMRLWSAKAPNDFKLHDFNVGG
Sbjct: 88 FYGRVEHSAEGVRWLDTQVVLAMPYDTPVPGYKNDTVNTMRLWSAKAPNDFKLHDFNVGG 147
Query: 890 YIEAVLDRNLAENISRVLYPTINSLKEKELRLKQEYFVVGSTLQDVIRRFKS 1045
YIEAVLDRNLAENISRVLYP N + KELRLKQEYFVV +TLQDVIRRFKS
Sbjct: 148 YIEAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDVIRRFKS 199
>ref|XP_003353833.1| PREDICTED: glycogen phosphorylase, muscle form isoform 3 [Sus
scrofa].
Length = 754
Score = 259 bits (661), Expect = 2e-69
Identities = 119/146 (81%), Positives = 132/146 (90%)
Frame = +2
Query: 608 QKIVNGWQVEEADDWLRYGNPWEKARPEYTLPVHFYGRVEHSAEGVRWLDTQVVLAMPYD 787
+KI GWQ+EEADDWLRYGN WEKARPE+TLPVHFYGRVEH+ +G +W+DTQVVLAMPYD
Sbjct: 81 KKITGGWQMEEADDWLRYGNAWEKARPEFTLPVHFYGRVEHTNQGAKWVDTQVVLAMPYD 140
Query: 788 TPVPGYKNDTVNTMRLWSAKAPNDFKLHDFNVGGYIEAVLDRNLAENISRVLYPTINSLK 967
TPVPGY+N+ VNTMRLWSAKAPNDF L DFNVGGYI+AVLDRNLAENISRVLYP N +
Sbjct: 141 TPVPGYRNNVVNTMRLWSAKAPNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFE 200
Query: 968 EKELRLKQEYFVVGSTLQDVIRRFKS 1045
KELRLKQEYFVV +TLQD+IRRFKS
Sbjct: 201 GKELRLKQEYFVVAATLQDIIRRFKS 226
Score = 146 bits (368), Expect = 2e-35
Identities = 67/83 (80%), Positives = 78/83 (93%)
Frame = +2
Query: 104 MAKPLTDGERRKQISVRGLAGLGDVAEVRKSFNRHLHFTLVKDRNVATRRDYYLALAHTV 283
M++PLTD E+RKQISVRGLAG+ +VAE++K+FNRHLHFTLVKDRNVA RDYY ALA+TV
Sbjct: 1 MSRPLTDQEKRKQISVRGLAGVENVAELKKNFNRHLHFTLVKDRNVANARDYYFALAYTV 60
Query: 284 RDHLVGRWIRTQQHYYERDPKRI 352
RDHLVGRWIRTQQHYYE+DPK+I
Sbjct: 61 RDHLVGRWIRTQQHYYEKDPKKI 83
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,878,070
Number of extensions: 525009
Number of successful extensions: 2172
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2154
Number of HSP's successfully gapped: 7
Length of query: 348
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 248
Effective length of database: 8,854,232
Effective search space: 2195849536
Effective search space used: 2195849536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013922
(1045 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_722476.1| glycogen phosphorylase, brain form [Mus musculu... 535 e-152
Alignment gi|NP_035354.1| glycogen phosphorylase, muscle form [Mus muscul... 510 e-145
Alignment gi|NP_573461.2| glycogen phosphorylase, liver form [Mus musculu... 501 e-142
>ref|NP_722476.1| glycogen phosphorylase, brain form [Mus musculus].
Length = 843
Score = 535 bits (1378), Expect = e-152
Identities = 262/314 (83%), Positives = 271/314 (86%)
Frame = +2
Query: 104 MAKPLTDGERRKQISVRGLAGLGDVAEVRKSFNRHLHFTLVKDRNVATRRDYYLALAHTV 283
MAKPLTD ER+KQISVRG+AGLGDVAEVRKSFNRHLHFTLVKDRNVAT RDY+ ALAHTV
Sbjct: 1 MAKPLTDSERQKQISVRGIAGLGDVAEVRKSFNRHLHFTLVKDRNVATPRDYFFALAHTV 60
Query: 284 RDHLVGRWIRTQQHYYERDPKRIYYLSLEFYMGRTLQNTMVNLGLQNACDEAIYQXXXXX 463
RDHLVGRWIRTQQHYYERDPKRIYYLSLEFYMGRTLQNTMVNLGLQ ACDEA YQ
Sbjct: 61 RDHLVGRWIRTQQHYYERDPKRIYYLSLEFYMGRTLQNTMVNLGLQTACDEATYQLGLDL 120
Query: 464 XXXXXXXXXXXXXXXXXXXXXXCFLDSMATLGLAAYGYGIRYEFGIFNQKIVNGWQVEEA 643
CFLDSMATLGLAAYGYGIRYEFGIFNQKIVNGWQVEEA
Sbjct: 121 EELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKIVNGWQVEEA 180
Query: 644 DDWLRYGNPWEKARPEYTLPVHFYGRVEHSAEGVRWLDTQVVLAMPYDTPVPGYKNDTVN 823
DDWLRYGNPWEKARPEY LPVHFYGRVEH+ +GV WLDTQVVLAMPYDTPVPGYKN+TVN
Sbjct: 181 DDWLRYGNPWEKARPEYMLPVHFYGRVEHTPDGVLWLDTQVVLAMPYDTPVPGYKNNTVN 240
Query: 824 TMRLWSAKAPNDFKLHDFNVGGYIEAVLDRNLAENISRVLYPTINSLKEKELRLKQEYFV 1003
TMRLWSAKAPNDFKL DFNVG YIEAVLDRNLAENISRVLYP N + KELRLKQEYFV
Sbjct: 241 TMRLWSAKAPNDFKLKDFNVGDYIEAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFV 300
Query: 1004 VGSTLQDVIRRFKS 1045
V +TLQD+IRRFKS
Sbjct: 301 VAATLQDIIRRFKS 314
>ref|NP_035354.1| glycogen phosphorylase, muscle form [Mus musculus].
Length = 842
Score = 510 bits (1314), Expect = e-145
Identities = 243/314 (77%), Positives = 269/314 (85%)
Frame = +2
Query: 104 MAKPLTDGERRKQISVRGLAGLGDVAEVRKSFNRHLHFTLVKDRNVATRRDYYLALAHTV 283
M++PL+D ++RKQISVRGLAG+ +V+E++K+FNRHLHFTLVKDRNVAT RDYY ALAHTV
Sbjct: 1 MSRPLSDQDKRKQISVRGLAGVENVSELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTV 60
Query: 284 RDHLVGRWIRTQQHYYERDPKRIYYLSLEFYMGRTLQNTMVNLGLQNACDEAIYQXXXXX 463
RDHLVGRWIRTQQHYYE+DPKRIYYLSLEFYMGRTLQNTMVNL L+NACDEA YQ
Sbjct: 61 RDHLVGRWIRTQQHYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDM 120
Query: 464 XXXXXXXXXXXXXXXXXXXXXXCFLDSMATLGLAAYGYGIRYEFGIFNQKIVNGWQVEEA 643
CFLDSMATLGLAAYGYGIRYEFGIFNQKI GWQ+EEA
Sbjct: 121 EELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEA 180
Query: 644 DDWLRYGNPWEKARPEYTLPVHFYGRVEHSAEGVRWLDTQVVLAMPYDTPVPGYKNDTVN 823
DDWLRYGNPWEKARPE+TLPVHFYGRVEH+++G +W+DTQVVLAMPYDTPVPGY+N+ VN
Sbjct: 181 DDWLRYGNPWEKARPEFTLPVHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVN 240
Query: 824 TMRLWSAKAPNDFKLHDFNVGGYIEAVLDRNLAENISRVLYPTINSLKEKELRLKQEYFV 1003
TMRLWSAKAPNDF L DFNVGGYI+AVLDRNLAENISRVLYP N + KELRLKQEYFV
Sbjct: 241 TMRLWSAKAPNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFV 300
Query: 1004 VGSTLQDVIRRFKS 1045
V +TLQD+IRRFKS
Sbjct: 301 VAATLQDIIRRFKS 314
>ref|NP_573461.2| glycogen phosphorylase, liver form [Mus musculus].
Length = 850
Score = 501 bits (1289), Expect = e-142
Identities = 239/314 (76%), Positives = 264/314 (84%)
Frame = +2
Query: 104 MAKPLTDGERRKQISVRGLAGLGDVAEVRKSFNRHLHFTLVKDRNVATRRDYYLALAHTV 283
MAKPLTD E+R+QIS+RG+ G+ +VAE++K FNRHLHFTLVKDRNVAT RDYY ALAHTV
Sbjct: 1 MAKPLTDQEKRRQISIRGIVGVENVAELKKGFNRHLHFTLVKDRNVATPRDYYFALAHTV 60
Query: 284 RDHLVGRWIRTQQHYYERDPKRIYYLSLEFYMGRTLQNTMVNLGLQNACDEAIYQXXXXX 463
RDHLVGRWIRTQQHYY++ PKR+YYLSLEFYMGRTLQNTM+NLGLQNACDEAIYQ
Sbjct: 61 RDHLVGRWIRTQQHYYDKCPKRVYYLSLEFYMGRTLQNTMINLGLQNACDEAIYQLGLDM 120
Query: 464 XXXXXXXXXXXXXXXXXXXXXXCFLDSMATLGLAAYGYGIRYEFGIFNQKIVNGWQVEEA 643
CFLDSMATLGLAAYGYGIRYE+GIFNQKI GWQVEEA
Sbjct: 121 EELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEYGIFNQKIREGWQVEEA 180
Query: 644 DDWLRYGNPWEKARPEYTLPVHFYGRVEHSAEGVRWLDTQVVLAMPYDTPVPGYKNDTVN 823
DDWLR+GNPWEKARPE+ LPVHFYGRVEH+ G +W+DTQVVLA+PYDTPVPGY N+TVN
Sbjct: 181 DDWLRHGNPWEKARPEFMLPVHFYGRVEHTQTGTKWVDTQVVLALPYDTPVPGYMNNTVN 240
Query: 824 TMRLWSAKAPNDFKLHDFNVGGYIEAVLDRNLAENISRVLYPTINSLKEKELRLKQEYFV 1003
TMRLWSA+APNDF L DFNVG YI+AVLDRNLAENISRVLYP N + KELRLKQEYFV
Sbjct: 241 TMRLWSARAPNDFNLQDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFV 300
Query: 1004 VGSTLQDVIRRFKS 1045
V +TLQDVIRRFK+
Sbjct: 301 VAATLQDVIRRFKA 314
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,253,756
Number of extensions: 679686
Number of successful extensions: 2572
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2563
Number of HSP's successfully gapped: 3
Length of query: 348
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 246
Effective length of database: 12,553,887
Effective search space: 3088256202
Effective search space used: 3088256202
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013922
(1045 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002853.2| glycogen phosphorylase, brain form [Homo sapien... 542 e-154
Alignment gi|NP_005600.1| glycogen phosphorylase, muscle form isoform 1 [... 509 e-144
Alignment gi|NP_002854.3| glycogen phosphorylase, liver form isoform 1 [H... 502 e-142
Alignment gi|NP_001157412.1| glycogen phosphorylase, liver form isoform 2... 426 e-119
Alignment gi|NP_001158188.1| glycogen phosphorylase, muscle form isoform ... 260 1e-69
>ref|NP_002853.2| glycogen phosphorylase, brain form [Homo sapiens].
Length = 843
Score = 542 bits (1397), Expect = e-154
Identities = 265/314 (84%), Positives = 274/314 (87%)
Frame = +2
Query: 104 MAKPLTDGERRKQISVRGLAGLGDVAEVRKSFNRHLHFTLVKDRNVATRRDYYLALAHTV 283
MAKPLTD E+RKQISVRGLAGLGDVAEVRKSFNRHLHFTLVKDRNVAT RDY+ ALAHTV
Sbjct: 1 MAKPLTDSEKRKQISVRGLAGLGDVAEVRKSFNRHLHFTLVKDRNVATPRDYFFALAHTV 60
Query: 284 RDHLVGRWIRTQQHYYERDPKRIYYLSLEFYMGRTLQNTMVNLGLQNACDEAIYQXXXXX 463
RDHLVGRWIRTQQHYYERDPKRIYYLSLEFYMGRTLQNTMVNLGLQNACDEAIYQ
Sbjct: 61 RDHLVGRWIRTQQHYYERDPKRIYYLSLEFYMGRTLQNTMVNLGLQNACDEAIYQLGLDL 120
Query: 464 XXXXXXXXXXXXXXXXXXXXXXCFLDSMATLGLAAYGYGIRYEFGIFNQKIVNGWQVEEA 643
CFLDSMATLGLAAYGYGIRYEFGIFNQKIVNGWQVEEA
Sbjct: 121 EELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKIVNGWQVEEA 180
Query: 644 DDWLRYGNPWEKARPEYTLPVHFYGRVEHSAEGVRWLDTQVVLAMPYDTPVPGYKNDTVN 823
DDWLRYGNPWEKARPEY LPVHFYGRVEH+ +GV+WLDTQVVLAMPYDTPVPGYKN+TVN
Sbjct: 181 DDWLRYGNPWEKARPEYMLPVHFYGRVEHTPDGVKWLDTQVVLAMPYDTPVPGYKNNTVN 240
Query: 824 TMRLWSAKAPNDFKLHDFNVGGYIEAVLDRNLAENISRVLYPTINSLKEKELRLKQEYFV 1003
TMRLWSAKAPNDFKL DFNVG YIEAVLDRNLAENISRVLYP N + KELRLKQEYFV
Sbjct: 241 TMRLWSAKAPNDFKLQDFNVGDYIEAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFV 300
Query: 1004 VGSTLQDVIRRFKS 1045
V +TLQD+IRRFKS
Sbjct: 301 VAATLQDIIRRFKS 314
>ref|NP_005600.1| glycogen phosphorylase, muscle form isoform 1 [Homo sapiens].
Length = 842
Score = 509 bits (1310), Expect = e-144
Identities = 243/314 (77%), Positives = 267/314 (85%)
Frame = +2
Query: 104 MAKPLTDGERRKQISVRGLAGLGDVAEVRKSFNRHLHFTLVKDRNVATRRDYYLALAHTV 283
M++PL+D E+RKQISVRGLAG+ +V E++K+FNRHLHFTLVKDRNVAT RDYY ALAHTV
Sbjct: 1 MSRPLSDQEKRKQISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTV 60
Query: 284 RDHLVGRWIRTQQHYYERDPKRIYYLSLEFYMGRTLQNTMVNLGLQNACDEAIYQXXXXX 463
RDHLVGRWIRTQQHYYE+DPKRIYYLSLEFYMGRTLQNTMVNL L+NACDEA YQ
Sbjct: 61 RDHLVGRWIRTQQHYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDM 120
Query: 464 XXXXXXXXXXXXXXXXXXXXXXCFLDSMATLGLAAYGYGIRYEFGIFNQKIVNGWQVEEA 643
CFLDSMATLGLAAYGYGIRYEFGIFNQKI GWQ+EEA
Sbjct: 121 EELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKISGGWQMEEA 180
Query: 644 DDWLRYGNPWEKARPEYTLPVHFYGRVEHSAEGVRWLDTQVVLAMPYDTPVPGYKNDTVN 823
DDWLRYGNPWEKARPE+TLPVHFYG VEH+++G +W+DTQVVLAMPYDTPVPGY+N+ VN
Sbjct: 181 DDWLRYGNPWEKARPEFTLPVHFYGHVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVN 240
Query: 824 TMRLWSAKAPNDFKLHDFNVGGYIEAVLDRNLAENISRVLYPTINSLKEKELRLKQEYFV 1003
TMRLWSAKAPNDF L DFNVGGYI+AVLDRNLAENISRVLYP N + KELRLKQEYFV
Sbjct: 241 TMRLWSAKAPNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFV 300
Query: 1004 VGSTLQDVIRRFKS 1045
V +TLQD+IRRFKS
Sbjct: 301 VAATLQDIIRRFKS 314
>ref|NP_002854.3| glycogen phosphorylase, liver form isoform 1 [Homo sapiens].
Length = 847
Score = 502 bits (1293), Expect = e-142
Identities = 238/314 (75%), Positives = 266/314 (84%)
Frame = +2
Query: 104 MAKPLTDGERRKQISVRGLAGLGDVAEVRKSFNRHLHFTLVKDRNVATRRDYYLALAHTV 283
MAKPLTD E+R+QIS+RG+ G+ +VAE++KSFNRHLHFTLVKDRNVAT RDYY ALAHTV
Sbjct: 1 MAKPLTDQEKRRQISIRGIVGVENVAELKKSFNRHLHFTLVKDRNVATTRDYYFALAHTV 60
Query: 284 RDHLVGRWIRTQQHYYERDPKRIYYLSLEFYMGRTLQNTMVNLGLQNACDEAIYQXXXXX 463
RDHLVGRWIRTQQHYY++ PKR+YYLSLEFYMGRTLQNTM+NLGLQNACDEAIYQ
Sbjct: 61 RDHLVGRWIRTQQHYYDKCPKRVYYLSLEFYMGRTLQNTMINLGLQNACDEAIYQLGLDI 120
Query: 464 XXXXXXXXXXXXXXXXXXXXXXCFLDSMATLGLAAYGYGIRYEFGIFNQKIVNGWQVEEA 643
CFLDSMATLGLAAYGYGIRYE+GIFNQKI +GWQVEEA
Sbjct: 121 EELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEA 180
Query: 644 DDWLRYGNPWEKARPEYTLPVHFYGRVEHSAEGVRWLDTQVVLAMPYDTPVPGYKNDTVN 823
DDWLRYGNPWEK+RPE+ LPVHFYG+VEH+ G +W+DTQVVLA+PYDTPVPGY N+TVN
Sbjct: 181 DDWLRYGNPWEKSRPEFMLPVHFYGKVEHTNTGTKWIDTQVVLALPYDTPVPGYMNNTVN 240
Query: 824 TMRLWSAKAPNDFKLHDFNVGGYIEAVLDRNLAENISRVLYPTINSLKEKELRLKQEYFV 1003
TMRLWSA+APNDF L DFNVG YI+AVLDRNLAENISRVLYP N + KELRLKQEYFV
Sbjct: 241 TMRLWSARAPNDFNLRDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFV 300
Query: 1004 VGSTLQDVIRRFKS 1045
V +TLQD+IRRFK+
Sbjct: 301 VAATLQDIIRRFKA 314
>ref|NP_001157412.1| glycogen phosphorylase, liver form isoform 2 [Homo sapiens].
Length = 813
Score = 426 bits (1094), Expect = e-119
Identities = 212/314 (67%), Positives = 241/314 (76%)
Frame = +2
Query: 104 MAKPLTDGERRKQISVRGLAGLGDVAEVRKSFNRHLHFTLVKDRNVATRRDYYLALAHTV 283
MAKPLTD E+R+QIS+RG+ G+ +VAE++KSFNRHLHFTLVKDRNVAT RDYY ALAHTV
Sbjct: 1 MAKPLTDQEKRRQISIRGIVGVENVAELKKSFNRHLHFTLVKDRNVATTRDYYFALAHTV 60
Query: 284 RDHLVGRWIRTQQHYYERDPKRIYYLSLEFYMGRTLQNTMVNLGLQNACDEAIYQXXXXX 463
RDHLVGRWIRTQQHYY++ PK L L+ L+ + GL N
Sbjct: 61 RDHLVGRWIRTQQHYYDKCPK----LGLDI---EELEEIEEDAGLGNG------------ 101
Query: 464 XXXXXXXXXXXXXXXXXXXXXXCFLDSMATLGLAAYGYGIRYEFGIFNQKIVNGWQVEEA 643
CFLDSMATLGLAAYGYGIRYE+GIFNQKI +GWQVEEA
Sbjct: 102 ---------------GLGRLAACFLDSMATLGLAAYGYGIRYEYGIFNQKIRDGWQVEEA 146
Query: 644 DDWLRYGNPWEKARPEYTLPVHFYGRVEHSAEGVRWLDTQVVLAMPYDTPVPGYKNDTVN 823
DDWLRYGNPWEK+RPE+ LPVHFYG+VEH+ G +W+DTQVVLA+PYDTPVPGY N+TVN
Sbjct: 147 DDWLRYGNPWEKSRPEFMLPVHFYGKVEHTNTGTKWIDTQVVLALPYDTPVPGYMNNTVN 206
Query: 824 TMRLWSAKAPNDFKLHDFNVGGYIEAVLDRNLAENISRVLYPTINSLKEKELRLKQEYFV 1003
TMRLWSA+APNDF L DFNVG YI+AVLDRNLAENISRVLYP N + KELRLKQEYFV
Sbjct: 207 TMRLWSARAPNDFNLRDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFV 266
Query: 1004 VGSTLQDVIRRFKS 1045
V +TLQD+IRRFK+
Sbjct: 267 VAATLQDIIRRFKA 280
>ref|NP_001158188.1| glycogen phosphorylase, muscle form isoform 2 [Homo sapiens].
Length = 754
Score = 260 bits (665), Expect = 1e-69
Identities = 119/146 (81%), Positives = 133/146 (91%)
Frame = +2
Query: 608 QKIVNGWQVEEADDWLRYGNPWEKARPEYTLPVHFYGRVEHSAEGVRWLDTQVVLAMPYD 787
+KI GWQ+EEADDWLRYGNPWEKARPE+TLPVHFYG VEH+++G +W+DTQVVLAMPYD
Sbjct: 81 KKISGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYGHVEHTSQGAKWVDTQVVLAMPYD 140
Query: 788 TPVPGYKNDTVNTMRLWSAKAPNDFKLHDFNVGGYIEAVLDRNLAENISRVLYPTINSLK 967
TPVPGY+N+ VNTMRLWSAKAPNDF L DFNVGGYI+AVLDRNLAENISRVLYP N +
Sbjct: 141 TPVPGYRNNVVNTMRLWSAKAPNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFE 200
Query: 968 EKELRLKQEYFVVGSTLQDVIRRFKS 1045
KELRLKQEYFVV +TLQD+IRRFKS
Sbjct: 201 GKELRLKQEYFVVAATLQDIIRRFKS 226
Score = 147 bits (370), Expect = 2e-35
Identities = 67/83 (80%), Positives = 78/83 (93%)
Frame = +2
Query: 104 MAKPLTDGERRKQISVRGLAGLGDVAEVRKSFNRHLHFTLVKDRNVATRRDYYLALAHTV 283
M++PL+D E+RKQISVRGLAG+ +V E++K+FNRHLHFTLVKDRNVAT RDYY ALAHTV
Sbjct: 1 MSRPLSDQEKRKQISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTV 60
Query: 284 RDHLVGRWIRTQQHYYERDPKRI 352
RDHLVGRWIRTQQHYYE+DPK+I
Sbjct: 61 RDHLVGRWIRTQQHYYEKDPKKI 83
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,691,268
Number of extensions: 822225
Number of successful extensions: 3102
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3093
Number of HSP's successfully gapped: 7
Length of query: 348
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 245
Effective length of database: 14,901,872
Effective search space: 3650958640
Effective search space used: 3650958640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013922
(1045 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896323.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 274 9e-71
gb|GL896342.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 206 2e-50
Sscrofa_Chr02 143 2e-31
Sscrofa_Chr01 121 8e-25
>gb|GL896323.1| Sus scrofa unplaced genomic scaffold chrU_scaffold675
Length = 65254
Score = 274 bits (138), Expect = 9e-71
Identities = 138/138 (100%)
Strand = Plus / Plus
Query: 628 gcaggtggaggaggccgatgactggctgcgctacggcaacccctgggagaaagctcggcc 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6215 gcaggtggaggaggccgatgactggctgcgctacggcaacccctgggagaaagctcggcc 6274
Query: 688 cgagtacacgctgccggtgcacttctacgggagagtggagcatagtgctgaaggcgtgcg 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6275 cgagtacacgctgccggtgcacttctacgggagagtggagcatagtgctgaaggcgtgcg 6334
Query: 748 gtggctggacacgcaggt 765
||||||||||||||||||
Sbjct: 6335 gtggctggacacgcaggt 6352
Score = 230 bits (116), Expect = 1e-57
Identities = 116/116 (100%)
Strand = Plus / Plus
Query: 760 gcaggtggtgctggccatgccctacgacaccccagtgcccggctacaagaacgacaccgt 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7194 gcaggtggtgctggccatgccctacgacaccccagtgcccggctacaagaacgacaccgt 7253
Query: 820 caacaccatgagactgtggtctgccaaggcgcccaatgacttcaagcttcatgact 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7254 caacaccatgagactgtggtctgccaaggcgcccaatgacttcaagcttcatgact 7309
Score = 228 bits (115), Expect = 5e-57
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 521 cttgcagcctgcttccttgactcgatggccaccttgggcctggcagcatacggctatgga 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3151 cttgcagcctgcttccttgactcgatggccaccttgggcctggcagcatacggctatgga 3210
Query: 581 atccgctatgagtttgggatttttaaccagaagattgtcaatggctggcaggtgg 635
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3211 atccgctatgagtttgggatttttaaccagaagattgtcaatggctggcaggtgg 3265
Score = 163 bits (82), Expect = 2e-37
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 446 cagttggggttggacttggaggagctggaagagatggaagaggatgccggcctggggaac 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 cagttggggttggacttggaggagctggaagagatggaagaggatgccggcctggggaac 921
Query: 506 ggaggcttggggcggcttgcag 527
||||||||||||||||||||||
Sbjct: 922 ggaggcttggggcggcttgcag 943
Score = 149 bits (75), Expect = 4e-33
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 876 tcaatgtgggtggctacatcgaggcagtgctggaccggaacctggccgagaacatctcca 935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7544 tcaatgtgggtggctacatcgaggcagtgctggaccggaacctggccgagaacatctcca 7603
Query: 936 gagtcctctacccca 950
|||||||||||||||
Sbjct: 7604 gagtcctctacccca 7618
Score = 119 bits (60), Expect = 3e-24
Identities = 69/72 (95%)
Strand = Plus / Plus
Query: 974 gagctgcggctgaagcaggagtacttcgtggtgggctccaccctgcaggacgtcatccgg 1033
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 8201 gagctgcggctgaagcaggagtacttcgtggtggctgccaccctgcaggacgtcatccgg 8260
Query: 1034 cgcttcaagtcg 1045
||||||||||||
Sbjct: 8261 cgcttcaagtcg 8272
>gb|GL896342.1| Sus scrofa unplaced genomic scaffold chrU_scaffold692
Length = 23392
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 345 agcgcatctattatctctccttggagttctacatgggccgaacgctgcagaacacgatgg 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5194 agcgcatctattatctctccttggagttctacatgggccgaacgctgcagaacacgatgg 5135
Query: 405 tgaacctgggccttcagaatgcctgcgacgaggccatctaccag 448
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5134 tgaacctgggccttcagaatgcctgcgacgaggccatctaccag 5091
Score = 153 bits (77), Expect = 2e-34
Identities = 77/77 (100%)
Strand = Plus / Minus
Query: 270 tggcgcacacggtgcgcgaccacctggtgggccgctggatccgtacgcagcagcattact 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19711 tggcgcacacggtgcgcgaccacctggtgggccgctggatccgtacgcagcagcattact 19652
Query: 330 acgagcgcgaccccaag 346
|||||||||||||||||
Sbjct: 19651 acgagcgcgaccccaag 19635
Score = 117 bits (59), Expect = 1e-23
Identities = 59/59 (100%)
Strand = Plus / Minus
Query: 24 gtagtcgccgcagcatcctccgtgcggttgtgttctaaccttgtcctcctcgtcctcgt 82
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20027 gtagtcgccgcagcatcctccgtgcggttgtgttctaaccttgtcctcctcgtcctcgt 19969
Score = 113 bits (57), Expect = 2e-22
Identities = 57/57 (100%)
Strand = Plus / Minus
Query: 197 ttcaaccggcacctgcacttcacgctcgttaaggaccgcaatgtggccacgcgccgc 253
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19868 ttcaaccggcacctgcacttcacgctcgttaaggaccgcaatgtggccacgcgccgc 19812
>Sscrofa_Chr02
|| Length = 162569375
Score = 143 bits (72), Expect = 2e-31
Identities = 137/156 (87%), Gaps = 2/156 (1%)
Strand = Plus / Plus
Query: 176 gtggcggaggtgcggaagagcttcaaccggcacctgcacttcacgctcgttaaggaccgc 235
||||||||| || ||||| |||||||||||||||||||||||| ||||| |||||||||
Sbjct: 6542410 gtggcggagctgaagaagaacttcaaccggcacctgcacttcaccctcgtgaaggaccgc 6542469
Query: 236 aatgtggcc-acgcgccgcgactactatctggctctggcgcacacggtgcgcgaccacct 294
|| |||||| |||| |||||||||||| | || ||||| |||| ||||||||||||||
Sbjct: 6542470 aacgtggccaacgc-ccgcgactactacttcgcgctggcctacaccgtgcgcgaccacct 6542528
Query: 295 ggtgggccgctggatccgtacgcagcagcattacta 330
||||||||||||||||| ||||||||||| |||||
Sbjct: 6542529 cgtgggccgctggatccgcacgcagcagcactacta 6542564
Score = 99.6 bits (50), Expect = 3e-18
Identities = 92/106 (86%)
Strand = Plus / Plus
Query: 759 cgcaggtggtgctggccatgccctacgacaccccagtgcccggctacaagaacgacaccg 818
||||||||||| ||||||||||||||||||| || ||||| |||||| ||| || ||
Sbjct: 6545885 cgcaggtggtgttggccatgccctacgacacacccgtgcctggctaccgcaacaacgtcg 6545944
Query: 819 tcaacaccatgagactgtggtctgccaaggcgcccaatgacttcaa 864
|||| |||||| | ||||||||||||||||| ||||||||||||||
Sbjct: 6545945 tcaataccatgcgcctgtggtctgccaaggcccccaatgacttcaa 6545990
Score = 91.7 bits (46), Expect = 7e-16
Identities = 79/90 (87%)
Strand = Plus / Plus
Query: 526 agcctgcttccttgactcgatggccaccttgggcctggcagcatacggctatggaatccg 585
||||||||| || ||||| ||||| || |||||||||| || || ||||| || |||||
Sbjct: 6544026 agcctgctttctggactccatggcaacactgggcctggctgcctatggctacgggatccg 6544085
Query: 586 ctatgagtttgggatttttaaccagaagat 615
||||||||||||||||||||||||||||||
Sbjct: 6544086 ctatgagtttgggatttttaaccagaagat 6544115
Score = 89.7 bits (45), Expect = 3e-15
Identities = 84/97 (86%)
Strand = Plus / Plus
Query: 633 tggaggaggccgatgactggctgcgctacggcaacccctgggagaaagctcggcccgagt 692
|||||||||| ||||||||||| ||||| |||||| |||||||||| || || ||||| |
Sbjct: 6544489 tggaggaggctgatgactggcttcgctatggcaacgcctgggagaaggcgcgacccgaat 6544548
Query: 693 acacgctgccggtgcacttctacgggagagtggagca 729
||||||||| ||||||||||| || ||||||||||
Sbjct: 6544549 tcacgctgcctgtgcacttctatggccgagtggagca 6544585
Score = 69.9 bits (35), Expect = 3e-09
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 974 gagctgcggctgaagcaggagtacttcgtggtgggctccaccctgcaggacgtcatccgg 1033
||||| ||| |||||||||||||||||||||||| |||| || |||||| |||||||
Sbjct: 6546891 gagctacggttgaagcaggagtacttcgtggtggcggccacgctccaggacatcatccgc 6546950
Query: 1034 cgcttcaagtc 1044
|||||||||||
Sbjct: 6546951 cgcttcaagtc 6546961
Score = 61.9 bits (31), Expect = 6e-07
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 366 tggagttctacatgggccgaacgctgcagaacacgatggtgaacctgggccttcagaatg 425
|||| |||||||||||||| ||||| || ||||| ||||||||||||| | | | ||||
Sbjct: 6543683 tggaattctacatgggccggacgctacaaaacaccatggtgaacctggccttggaaaatg 6543742
Query: 426 cctgcgacgaggccatctaccag 448
|||| || ||||||| |||||||
Sbjct: 6543743 cctgtgatgaggccacctaccag 6543765
Score = 61.9 bits (31), Expect = 6e-07
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 884 ggtggctacatcgaggcagtgctggaccggaacctggccgagaacat 930
|||||||||||| |||| ||||||||||| |||||||| ||||||||
Sbjct: 6546096 ggtggctacatccaggctgtgctggaccgcaacctggctgagaacat 6546142
>Sscrofa_Chr01
|| Length = 315321322
Score = 121 bits (61), Expect = 8e-25
Identities = 115/133 (86%)
Strand = Plus / Minus
Query: 190 gaagagcttcaaccggcacctgcacttcacgctcgttaaggaccgcaatgtggccacgcg 249
|||| |||||||||| |||||||| ||||| || || |||||||| ||||||||||| |
Sbjct: 200991481 gaagggcttcaaccgacacctgcatttcacactggtcaaggaccgtaatgtggccacccc 200991422
Query: 250 ccgcgactactatctggctctggcgcacacggtgcgcgaccacctggtgggccgctggat 309
|||||||||| | || ||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 200991421 tcgcgactacttcttcgcgctggcgcacacagtgcgcgaccacctggtggggcgctggat 200991362
Query: 310 ccgtacgcagcag 322
||| |||||||||
Sbjct: 200991361 ccgcacgcagcag 200991349
Score = 79.8 bits (40), Expect = 3e-12
Identities = 82/96 (85%)
Strand = Plus / Minus
Query: 353 tattatctctccttggagttctacatgggccgaacgctgcagaacacgatggtgaacctg 412
||||| ||||||||||| || ||||| |||||||| |||||||||| ||| | |||||
Sbjct: 200984615 tattacctctccttggaattttacataggccgaacattgcagaacaccatgatcaacctt 200984556
Query: 413 ggccttcagaatgcctgcgacgaggccatctaccag 448
||||| |||||||| || ||||||||||| ||||||
Sbjct: 200984555 ggcctgcagaatgcttgtgacgaggccatttaccag 200984520
Score = 65.9 bits (33), Expect = 4e-08
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 665 aacccctgggagaaagctcggcccgagtacacgctgccggtgcacttctacgggagagtg 724
|||||||||||||| || || ||||||| || |||||| ||||||||||| || ||||||
Sbjct: 200969888 aacccctgggagaaggcccgccccgagttcatgctgcctgtgcacttctatggaagagtg 200969829
Query: 725 gagca 729
|||||
Sbjct: 200969828 gagca 200969824
Score = 63.9 bits (32), Expect = 2e-07
Identities = 86/104 (82%)
Strand = Plus / Minus
Query: 761 caggtggtgctggccatgccctacgacaccccagtgcccggctacaagaacgacaccgtc 820
|||||||| ||||| |||| || |||||||| ||||| || || |||| |||| |||
Sbjct: 200966880 caggtggtcctggctctgccatatgacaccccggtgcctgggtatctgaacaacacggtc 200966821
Query: 821 aacaccatgagactgtggtctgccaaggcgcccaatgacttcaa 864
||||||||| | || ||||||||| ||||||||||||||||||
Sbjct: 200966820 aacaccatgcgtctctggtctgcccgggcgcccaatgacttcaa 200966777
Score = 60.0 bits (30), Expect = 3e-06
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 897 aggcagtgctggaccggaacctggccgagaacatctccagagtcctctacccca 950
|||| |||||||||||||| ||||| |||||||||||| | |||||||| ||||
Sbjct: 200966397 aggccgtgctggaccggaatctggctgagaacatctcccgggtcctctatccca 200966344
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 21,701,935
Number of extensions: 131
Number of successful extensions: 131
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 22
Length of query: 1045
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1024
Effective length of database: 2,808,413,156
Effective search space: 2875815071744
Effective search space used: 2875815071744
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)