Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013925
(1019 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001103471.1| GTPase KRas [Bos taurus]. 311 8e-85
Alignment gi|NP_001229275.1| GTPase HRas isoform 1 [Bos taurus]. 291 8e-79
Alignment gi|NP_001091458.1| GTPase NRas [Bos taurus]. 291 8e-79
Alignment gi|NP_001229276.1| GTPase HRas isoform 2 [Bos taurus]. 267 1e-71
Alignment gi|NP_001092480.1| ras-related protein R-Ras2 [Bos taurus]. 178 8e-45
Alignment gi|NP_787018.1| ras-related protein Rap-1b precursor [Bos tauru... 177 1e-44
Alignment gi|NP_776873.1| ras-related protein Rap-1A precursor [Bos tauru... 177 1e-44
Alignment gi|XP_002689005.1| PREDICTED: RAP1B, member of RAS oncogene fam... 174 1e-43
Alignment gi|XP_001255260.1| PREDICTED: RAP1B, member of RAS oncogene fam... 174 1e-43
Alignment gi|NP_001029816.1| ras-related protein Ral-A [Bos taurus]. 168 6e-42
>ref|NP_001103471.1| GTPase KRas [Bos taurus].
Length = 188
Score = 311 bits (796), Expect = 8e-85
Identities = 159/188 (84%), Positives = 159/188 (84%)
Frame = +2
Query: 215 MTEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 394
MTEYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 395 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 574
QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 120
Query: 575 PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRXXXXXXXXXXXXXXXX 754
PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR
Sbjct: 121 PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKDGKKKKKK 180
Query: 755 XXXXCIIM 778
CIIM
Sbjct: 181 SKTKCIIM 188
>ref|NP_001229275.1| GTPase HRas isoform 1 [Bos taurus].
Length = 189
Score = 291 bits (744), Expect = 8e-79
Identities = 144/164 (87%), Positives = 152/164 (92%)
Frame = +2
Query: 215 MTEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 394
MTEYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 395 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 574
QEEYSAMRDQYMRTGEGFLCVFAIN+ KSFEDIH YREQIKRVKDS+DVPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINHVKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 575 PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 706
+RTV+++QAQDLARSYGIP+IETSAKTRQGV+DAFYTLVREIR
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>ref|NP_001091458.1| GTPase NRas [Bos taurus].
Length = 189
Score = 291 bits (744), Expect = 8e-79
Identities = 145/164 (88%), Positives = 152/164 (92%)
Frame = +2
Query: 215 MTEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 394
MTEYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 395 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 574
QEEYSAMRDQYMRTGEGFLCVFAINN+KSF DI+ YREQIKRVKDS+DVPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 575 PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 706
P+RTVDTKQA +LA+SYGIPFIETSAKTRQGV+DAFYTLVREIR
Sbjct: 121 PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIR 164
>ref|NP_001229276.1| GTPase HRas isoform 2 [Bos taurus].
Length = 170
Score = 267 bits (683), Expect = 1e-71
Identities = 132/151 (87%), Positives = 139/151 (92%)
Frame = +2
Query: 215 MTEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 394
MTEYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 395 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 574
QEEYSAMRDQYMRTGEGFLCVFAIN+ KSFEDIH YREQIKRVKDS+DVPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINHVKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 575 PSRTVDTKQAQDLARSYGIPFIETSAKTRQG 667
+RTV+++QAQDLARSYGIP+IETSAKTRQG
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQG 151
>ref|NP_001092480.1| ras-related protein R-Ras2 [Bos taurus].
Length = 204
Score = 178 bits (451), Expect = 8e-45
Identities = 91/163 (55%), Positives = 115/163 (70%), Gaps = 1/163 (0%)
Frame = +2
Query: 221 EYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 400
+Y+L KSALTIQ IQ++FV +YDPTIEDSY KQ VID LDILDTAGQE
Sbjct: 14 KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQE 73
Query: 401 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP- 577
E+ AMR+QYMRTGEGFL VF++ + SFE+I+ ++ QI RVKD ++ PM+L+GNK DL
Sbjct: 74 EFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDH 133
Query: 578 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 706
R V ++ Q LAR + ++E SAK R VD AF+ LVR IR
Sbjct: 134 QRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIR 176
>ref|NP_787018.1| ras-related protein Rap-1b precursor [Bos taurus].
Length = 184
Score = 177 bits (450), Expect = 1e-44
Identities = 89/165 (53%), Positives = 119/165 (72%), Gaps = 2/165 (1%)
Frame = +2
Query: 215 MTEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 394
M EYKL KSALT+Q +Q FV++YDPTIEDSYRKQV +D + C+L+ILDTAG
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAG 60
Query: 395 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 574
E+++AMRD YM+ G+GF V++I +F D+ REQI RVKD++DVPM+LVGNKCDL
Sbjct: 61 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDL 120
Query: 575 -PSRTVDTKQAQDLARSY-GIPFIETSAKTRQGVDDAFYTLVREI 703
R V +Q Q+LAR + F+E+SAK++ V++ FY LVR+I
Sbjct: 121 EDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165
>ref|NP_776873.1| ras-related protein Rap-1A precursor [Bos taurus].
Length = 184
Score = 177 bits (450), Expect = 1e-44
Identities = 90/165 (54%), Positives = 119/165 (72%), Gaps = 2/165 (1%)
Frame = +2
Query: 215 MTEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 394
M EYKL KSALT+Q +Q FV++YDPTIEDSYRKQV +D + C+L+ILDTAG
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAG 60
Query: 395 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 574
E+++AMRD YM+ G+GF V++I +F D+ REQI RVKD+EDVPM+LVGNKCDL
Sbjct: 61 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL 120
Query: 575 -PSRTVDTKQAQDLARSY-GIPFIETSAKTRQGVDDAFYTLVREI 703
R V +Q Q+LAR + F+E+SAK++ V++ FY LVR+I
Sbjct: 121 EDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>ref|XP_002689005.1| PREDICTED: RAP1B, member of RAS oncogene family-like [Bos taurus].
Length = 184
Score = 174 bits (441), Expect = 1e-43
Identities = 87/165 (52%), Positives = 118/165 (71%), Gaps = 2/165 (1%)
Frame = +2
Query: 215 MTEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 394
M EYKL KSALT+Q +Q FV++YDPTIEDSYRKQV +D + C+L+ILDTAG
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAG 60
Query: 395 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 574
E+++AMRD YM+ G+GF V++I +F D+ REQI RVKD++DVPM+LVG+KCDL
Sbjct: 61 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGSKCDL 120
Query: 575 -PSRTVDTKQAQDLARSY-GIPFIETSAKTRQGVDDAFYTLVREI 703
R V +Q Q+LAR + F+E+SAK++ V++ FY L R+I
Sbjct: 121 EDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLARQI 165
>ref|XP_001255260.1| PREDICTED: RAP1B, member of RAS oncogene family [Bos taurus].
Length = 184
Score = 174 bits (441), Expect = 1e-43
Identities = 87/165 (52%), Positives = 118/165 (71%), Gaps = 2/165 (1%)
Frame = +2
Query: 215 MTEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 394
M EYKL KSALT+Q +Q FV++YDPTIEDSYRKQV +D + C+L+ILDTAG
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAG 60
Query: 395 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 574
E+++AMRD YM+ G+GF V++I +F D+ REQI RVKD++DVPM+LVG+KCDL
Sbjct: 61 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGSKCDL 120
Query: 575 -PSRTVDTKQAQDLARSY-GIPFIETSAKTRQGVDDAFYTLVREI 703
R V +Q Q+LAR + F+E+SAK++ V++ FY L R+I
Sbjct: 121 EDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLARQI 165
>ref|NP_001029816.1| ras-related protein Ral-A [Bos taurus].
Length = 206
Score = 168 bits (426), Expect = 6e-42
Identities = 85/172 (49%), Positives = 118/172 (68%), Gaps = 1/172 (0%)
Frame = +2
Query: 194 RERGLLKMTEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLL 373
+ +G + +K+ KSALT+Q + + FV++Y+PT DSYRK+VV+DGE +
Sbjct: 5 KPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQI 64
Query: 374 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVL 553
DILDTAGQE+Y+A+RD Y R+GEGFLCVF+I +SF +REQI RVK+ E+VP +L
Sbjct: 65 DILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLL 124
Query: 554 VGNKCDL-PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 706
VGNK DL R V ++A+ A + + ++ETSAKTR VD F+ L+REIR
Sbjct: 125 VGNKSDLEDKRQVSVEEAKTRADQWNVNYVETSAKTRANVDKVFFDLMREIR 176
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 27,756,215
Number of extensions: 656469
Number of successful extensions: 1632
Number of sequences better than 1.0e-05: 145
Number of HSP's gapped: 1517
Number of HSP's successfully gapped: 145
Length of query: 339
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 236
Effective length of database: 14,273,310
Effective search space: 3368501160
Effective search space used: 3368501160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013925
(1019 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540523.2| PREDICTED: similar to Transforming protein p21/... 295 6e-80
Alignment gi|XP_848629.1| PREDICTED: similar to Transforming protein N-Ra... 291 9e-79
Alignment gi|XP_863066.1| PREDICTED: similar to Ras-related protein Rap-1... 177 1e-44
Alignment gi|XP_540344.2| PREDICTED: similar to Ras-related protein Rap-1... 177 1e-44
Alignment gi|XP_851250.1| PREDICTED: similar to RAS related protein 1b [C... 177 1e-44
Alignment gi|XP_533083.2| PREDICTED: similar to ras related v-ral simian ... 168 7e-42
Alignment gi|XP_863092.1| PREDICTED: similar to Ras-related protein Rap-1... 168 9e-42
Alignment gi|XP_534068.2| PREDICTED: similar to related RAS viral (r-ras)... 163 2e-40
Alignment gi|XP_533617.1| PREDICTED: similar to Ras-related protein R-Ras... 162 4e-40
Alignment gi|XP_534277.2| PREDICTED: similar to Ras-related protein M-Ras... 162 6e-40
>ref|XP_540523.2| PREDICTED: similar to Transforming protein p21/H-Ras-1 (c-H-ras)
[Canis familiaris].
Length = 226
Score = 295 bits (754), Expect = 6e-80
Identities = 146/164 (89%), Positives = 153/164 (93%)
Frame = +2
Query: 215 MTEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 394
MTEYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG
Sbjct: 38 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 97
Query: 395 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 574
QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH YREQIKRVKDS+DVPMVLVGNKCDL
Sbjct: 98 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 157
Query: 575 PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 706
+RTV+++QAQDLARSYGIP+IETSAKTRQGV+DAFYTLVREIR
Sbjct: 158 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 201
>ref|XP_848629.1| PREDICTED: similar to Transforming protein N-Ras [Canis
familiaris].
Length = 189
Score = 291 bits (744), Expect = 9e-79
Identities = 145/164 (88%), Positives = 152/164 (92%)
Frame = +2
Query: 215 MTEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 394
MTEYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 395 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 574
QEEYSAMRDQYMRTGEGFLCVFAINN+KSF DI+ YREQIKRVKDS+DVPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 575 PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 706
P+RTVDTKQA +LA+SYGIPFIETSAKTRQGV+DAFYTLVREIR
Sbjct: 121 PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIR 164
>ref|XP_863066.1| PREDICTED: similar to Ras-related protein Rap-1A (Ras-related
protein Krev-1) isoform 2 [Canis familiaris].
Length = 184
Score = 177 bits (450), Expect = 1e-44
Identities = 90/165 (54%), Positives = 119/165 (72%), Gaps = 2/165 (1%)
Frame = +2
Query: 215 MTEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 394
M EYKL KSALT+Q +Q FV++YDPTIEDSYRKQV +D + C+L+ILDTAG
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAG 60
Query: 395 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 574
E+++AMRD YM+ G+GF V++I +F D+ REQI RVKD+EDVPM+LVGNKCDL
Sbjct: 61 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL 120
Query: 575 -PSRTVDTKQAQDLARSY-GIPFIETSAKTRQGVDDAFYTLVREI 703
R V +Q Q+LAR + F+E+SAK++ V++ FY LVR+I
Sbjct: 121 EDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>ref|XP_540344.2| PREDICTED: similar to Ras-related protein Rap-1A (Ras-related
protein Krev-1) isoform 1 [Canis familiaris].
Length = 184
Score = 177 bits (450), Expect = 1e-44
Identities = 90/165 (54%), Positives = 119/165 (72%), Gaps = 2/165 (1%)
Frame = +2
Query: 215 MTEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 394
M EYKL KSALT+Q +Q FV++YDPTIEDSYRKQV +D + C+L+ILDTAG
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAG 60
Query: 395 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 574
E+++AMRD YM+ G+GF V++I +F D+ REQI RVKD+EDVPM+LVGNKCDL
Sbjct: 61 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL 120
Query: 575 -PSRTVDTKQAQDLARSY-GIPFIETSAKTRQGVDDAFYTLVREI 703
R V +Q Q+LAR + F+E+SAK++ V++ FY LVR+I
Sbjct: 121 EDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>ref|XP_851250.1| PREDICTED: similar to RAS related protein 1b [Canis familiaris].
Length = 184
Score = 177 bits (450), Expect = 1e-44
Identities = 89/165 (53%), Positives = 119/165 (72%), Gaps = 2/165 (1%)
Frame = +2
Query: 215 MTEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 394
M EYKL KSALT+Q +Q FV++YDPTIEDSYRKQV +D + C+L+ILDTAG
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAG 60
Query: 395 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 574
E+++AMRD YM+ G+GF V++I +F D+ REQI RVKD++DVPM+LVGNKCDL
Sbjct: 61 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDL 120
Query: 575 -PSRTVDTKQAQDLARSY-GIPFIETSAKTRQGVDDAFYTLVREI 703
R V +Q Q+LAR + F+E+SAK++ V++ FY LVR+I
Sbjct: 121 EDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165
>ref|XP_533083.2| PREDICTED: similar to ras related v-ral simian leukemia viral
oncogene homolog A isoform 1 [Canis familiaris].
Length = 206
Score = 168 bits (426), Expect = 7e-42
Identities = 85/172 (49%), Positives = 118/172 (68%), Gaps = 1/172 (0%)
Frame = +2
Query: 194 RERGLLKMTEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLL 373
+ +G + +K+ KSALT+Q + + FV++Y+PT DSYRK+VV+DGE +
Sbjct: 5 KPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQI 64
Query: 374 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVL 553
DILDTAGQE+Y+A+RD Y R+GEGFLCVF+I +SF +REQI RVK+ E+VP +L
Sbjct: 65 DILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLL 124
Query: 554 VGNKCDL-PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 706
VGNK DL R V ++A+ A + + ++ETSAKTR VD F+ L+REIR
Sbjct: 125 VGNKSDLEDKRQVSVEEAKTRADQWNVNYVETSAKTRANVDKVFFDLMREIR 176
>ref|XP_863092.1| PREDICTED: similar to Ras-related protein Rap-1A (Ras-related
protein Krev-1) isoform 3 [Canis familiaris].
Length = 159
Score = 168 bits (425), Expect = 9e-42
Identities = 85/158 (53%), Positives = 113/158 (71%), Gaps = 2/158 (1%)
Frame = +2
Query: 215 MTEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 394
M EYKL KSALT+Q +Q FV++YDPTIEDSYRKQV +D + C+L+ILDTAG
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAG 60
Query: 395 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 574
E+++AMRD YM+ G+GF V++I +F D+ REQI RVKD+EDVPM+LVGNKCDL
Sbjct: 61 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL 120
Query: 575 -PSRTVDTKQAQDLARSY-GIPFIETSAKTRQGVDDAF 682
R V +Q Q+LAR + F+E+SAK++ V++ F
Sbjct: 121 EDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158
>ref|XP_534068.2| PREDICTED: similar to related RAS viral (r-ras) oncogene homolog 2
(predicted) [Canis familiaris].
Length = 285
Score = 163 bits (413), Expect = 2e-40
Identities = 81/142 (57%), Positives = 104/142 (73%), Gaps = 1/142 (0%)
Frame = +2
Query: 284 IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 463
+Q++FV +YDPTIEDSY KQ VID LDILDTAGQEE+ AMR+QYMRTGEGFL VF+
Sbjct: 116 LQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFS 175
Query: 464 INNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFI 640
+ + SFE+I+ ++ QI RVKD ++ PM+L+GNK DL R V ++ Q LAR + ++
Sbjct: 176 VTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYM 235
Query: 641 ETSAKTRQGVDDAFYTLVREIR 706
E SAK R VD AF+ LVR IR
Sbjct: 236 EASAKIRMNVDQAFHELVRVIR 257
>ref|XP_533617.1| PREDICTED: similar to Ras-related protein R-Ras (p23) [Canis
familiaris].
Length = 218
Score = 162 bits (411), Expect = 4e-40
Identities = 87/162 (53%), Positives = 107/162 (66%), Gaps = 1/162 (0%)
Frame = +2
Query: 224 YKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 403
+KL KSALTIQ IQ++FV +YDPTIEDSY K +DG LDILDTAGQEE
Sbjct: 30 HKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICTVDGVPARLDILDTAGQEE 89
Query: 404 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS- 580
+ AMR+QYMR G GFL VFAIN+ +SF ++ QI RVKD +D P+VLVGNK DL +
Sbjct: 90 FGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPIVLVGNKADLETQ 149
Query: 581 RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 706
R V +A S+ + + E SAK R VD+AF LVR +R
Sbjct: 150 RQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVR 191
>ref|XP_534277.2| PREDICTED: similar to Ras-related protein M-Ras (Ras-related
protein R-Ras3) [Canis familiaris].
Length = 208
Score = 162 bits (409), Expect = 6e-40
Identities = 86/163 (52%), Positives = 109/163 (66%), Gaps = 2/163 (1%)
Frame = +2
Query: 224 YKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 403
YKL KSALTIQ Q FV +YDPTIEDSY K ID + +LD+LDTAGQEE
Sbjct: 14 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEE 73
Query: 404 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS- 580
+SAMR+QYMRTG+GFL V+++ + SFE + + + I RVKD E PM+LV NK DL
Sbjct: 74 FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL 133
Query: 581 RTVDTKQAQDLARSYGIPFIETSAKTRQ-GVDDAFYTLVREIR 706
R + +Q +++A + IP+IETSAK VD AF+ LVR IR
Sbjct: 134 RKITREQGKEMATKHNIPYIETSAKDPPLNVDKAFHDLVRVIR 176
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 28,421,851
Number of extensions: 586220
Number of successful extensions: 1619
Number of sequences better than 1.0e-05: 131
Number of HSP's gapped: 1513
Number of HSP's successfully gapped: 131
Length of query: 339
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 236
Effective length of database: 15,440,896
Effective search space: 3644051456
Effective search space used: 3644051456
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013925
(1019 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126475.1| PREDICTED: GTPase KRas-like [Sus scrofa]. 311 5e-85
Alignment gi|NP_001038002.1| GTPase NRas precursor [Sus scrofa]. 291 5e-79
Alignment gi|XP_003361755.1| PREDICTED: ras-related protein Rap-1b [Sus s... 177 6e-45
Alignment gi|XP_003355289.1| PREDICTED: ras-related protein Rap-1A isofor... 177 6e-45
Alignment gi|XP_001928684.1| PREDICTED: ras-related protein Rap-1A isofor... 177 6e-45
Alignment gi|XP_003360264.1| PREDICTED: ras-related protein Ral-A-like [S... 168 4e-42
Alignment gi|XP_003356046.1| PREDICTED: ras-related protein R-Ras-like [S... 163 1e-40
Alignment gi|XP_003358618.1| PREDICTED: ras-related protein M-Ras-like [S... 163 2e-40
Alignment gi|XP_003359496.1| PREDICTED: ras-related protein Ral-B-like [S... 161 5e-40
Alignment gi|XP_003359495.1| PREDICTED: ras-related protein Ral-B-like [S... 161 5e-40
>ref|XP_003126475.1| PREDICTED: GTPase KRas-like [Sus scrofa].
Length = 188
Score = 311 bits (796), Expect = 5e-85
Identities = 159/188 (84%), Positives = 159/188 (84%)
Frame = +2
Query: 215 MTEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 394
MTEYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 395 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 574
QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 120
Query: 575 PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRXXXXXXXXXXXXXXXX 754
PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR
Sbjct: 121 PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKDGKKKKKK 180
Query: 755 XXXXCIIM 778
CIIM
Sbjct: 181 SKTKCIIM 188
>ref|NP_001038002.1| GTPase NRas precursor [Sus scrofa].
Length = 189
Score = 291 bits (744), Expect = 5e-79
Identities = 145/164 (88%), Positives = 152/164 (92%)
Frame = +2
Query: 215 MTEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 394
MTEYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 395 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 574
QEEYSAMRDQYMRTGEGFLCVFAINN+KSF DI+ YREQIKRVKDS+DVPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 575 PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 706
P+RTVDTKQA +LA+SYGIPFIETSAKTRQGV+DAFYTLVREIR
Sbjct: 121 PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIR 164
>ref|XP_003361755.1| PREDICTED: ras-related protein Rap-1b [Sus scrofa].
Length = 184
Score = 177 bits (450), Expect = 6e-45
Identities = 89/165 (53%), Positives = 119/165 (72%), Gaps = 2/165 (1%)
Frame = +2
Query: 215 MTEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 394
M EYKL KSALT+Q +Q FV++YDPTIEDSYRKQV +D + C+L+ILDTAG
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAG 60
Query: 395 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 574
E+++AMRD YM+ G+GF V++I +F D+ REQI RVKD++DVPM+LVGNKCDL
Sbjct: 61 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDL 120
Query: 575 -PSRTVDTKQAQDLARSY-GIPFIETSAKTRQGVDDAFYTLVREI 703
R V +Q Q+LAR + F+E+SAK++ V++ FY LVR+I
Sbjct: 121 EDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165
>ref|XP_003355289.1| PREDICTED: ras-related protein Rap-1A isoform 2 [Sus scrofa].
Length = 184
Score = 177 bits (450), Expect = 6e-45
Identities = 90/165 (54%), Positives = 119/165 (72%), Gaps = 2/165 (1%)
Frame = +2
Query: 215 MTEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 394
M EYKL KSALT+Q +Q FV++YDPTIEDSYRKQV +D + C+L+ILDTAG
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAG 60
Query: 395 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 574
E+++AMRD YM+ G+GF V++I +F D+ REQI RVKD+EDVPM+LVGNKCDL
Sbjct: 61 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL 120
Query: 575 -PSRTVDTKQAQDLARSY-GIPFIETSAKTRQGVDDAFYTLVREI 703
R V +Q Q+LAR + F+E+SAK++ V++ FY LVR+I
Sbjct: 121 EDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>ref|XP_001928684.1| PREDICTED: ras-related protein Rap-1A isoform 1 [Sus scrofa].
Length = 184
Score = 177 bits (450), Expect = 6e-45
Identities = 90/165 (54%), Positives = 119/165 (72%), Gaps = 2/165 (1%)
Frame = +2
Query: 215 MTEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 394
M EYKL KSALT+Q +Q FV++YDPTIEDSYRKQV +D + C+L+ILDTAG
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAG 60
Query: 395 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 574
E+++AMRD YM+ G+GF V++I +F D+ REQI RVKD+EDVPM+LVGNKCDL
Sbjct: 61 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL 120
Query: 575 -PSRTVDTKQAQDLARSY-GIPFIETSAKTRQGVDDAFYTLVREI 703
R V +Q Q+LAR + F+E+SAK++ V++ FY LVR+I
Sbjct: 121 EDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>ref|XP_003360264.1| PREDICTED: ras-related protein Ral-A-like [Sus scrofa].
Length = 206
Score = 168 bits (426), Expect = 4e-42
Identities = 85/172 (49%), Positives = 118/172 (68%), Gaps = 1/172 (0%)
Frame = +2
Query: 194 RERGLLKMTEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLL 373
+ +G + +K+ KSALT+Q + + FV++Y+PT DSYRK+VV+DGE +
Sbjct: 5 KPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQI 64
Query: 374 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVL 553
DILDTAGQE+Y+A+RD Y R+GEGFLCVF+I +SF +REQI RVK+ E+VP +L
Sbjct: 65 DILDTAGQEDYAAIRDNYFRSGEGFLCVFSITELESFAATADFREQILRVKEDENVPFLL 124
Query: 554 VGNKCDL-PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 706
VGNK DL R V ++A+ A + + ++ETSAKTR VD F+ L+REIR
Sbjct: 125 VGNKSDLEDKRQVSVEEAKTRADQWNVNYVETSAKTRANVDKVFFDLMREIR 176
>ref|XP_003356046.1| PREDICTED: ras-related protein R-Ras-like [Sus scrofa].
Length = 218
Score = 163 bits (413), Expect = 1e-40
Identities = 87/162 (53%), Positives = 108/162 (66%), Gaps = 1/162 (0%)
Frame = +2
Query: 224 YKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 403
+KL KSALTIQ IQ++FV +YDPTIEDSY K +DG LDILDTAGQEE
Sbjct: 30 HKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICTVDGVPARLDILDTAGQEE 89
Query: 404 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS- 580
+ AMR+QYMR G GFL VFAIN+ +SF ++ QI RVKD +D P+VLVGNK DL +
Sbjct: 90 FGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPIVLVGNKADLETQ 149
Query: 581 RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 706
R V +A + S+ + + E SAK R VD+AF LVR +R
Sbjct: 150 RQVPRSEASAFSNSHHVAYFEASAKLRLNVDEAFEQLVRAVR 191
>ref|XP_003358618.1| PREDICTED: ras-related protein M-Ras-like [Sus scrofa].
Length = 208
Score = 163 bits (412), Expect = 2e-40
Identities = 87/163 (53%), Positives = 109/163 (66%), Gaps = 2/163 (1%)
Frame = +2
Query: 224 YKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 403
YKL KSALTIQ Q FV +YDPTIEDSY K ID + +LD+LDTAGQEE
Sbjct: 14 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEE 73
Query: 404 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS- 580
+SAMR+QYMRTG+GFL VF++ + SFE + + + I RVKD E PM+LV NK DL
Sbjct: 74 FSAMREQYMRTGDGFLIVFSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL 133
Query: 581 RTVDTKQAQDLARSYGIPFIETSAKTRQ-GVDDAFYTLVREIR 706
R + +Q +++A + IP+IETSAK VD AF+ LVR IR
Sbjct: 134 RKITREQGKEMATKHNIPYIETSAKDPPLNVDKAFHDLVRVIR 176
>ref|XP_003359496.1| PREDICTED: ras-related protein Ral-B-like [Sus scrofa].
Length = 206
Score = 161 bits (408), Expect = 5e-40
Identities = 82/151 (54%), Positives = 111/151 (73%), Gaps = 2/151 (1%)
Frame = +2
Query: 260 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 439
KSALT+Q + + FV++Y+PT DSYRK+VV+DGE +DILDTAGQE+Y+A+RD Y R+G
Sbjct: 27 KSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG 86
Query: 440 EGFLCVFAINNTKSFEDIHHYREQIKRVKDSED-VPMVLVGNKCDLPS-RTVDTKQAQDL 613
EGFL VF+I +SF +REQI RVK ED +P+++VGNK DL R V ++A+
Sbjct: 87 EGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARAK 146
Query: 614 ARSYGIPFIETSAKTRQGVDDAFYTLVREIR 706
A +G+ ++ETSAKTR VD F+ L+REIR
Sbjct: 147 AEEWGVQYVETSAKTRANVDKVFFDLMREIR 177
>ref|XP_003359495.1| PREDICTED: ras-related protein Ral-B-like [Sus scrofa].
Length = 206
Score = 161 bits (408), Expect = 5e-40
Identities = 82/151 (54%), Positives = 111/151 (73%), Gaps = 2/151 (1%)
Frame = +2
Query: 260 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 439
KSALT+Q + + FV++Y+PT DSYRK+VV+DGE +DILDTAGQE+Y+A+RD Y R+G
Sbjct: 27 KSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG 86
Query: 440 EGFLCVFAINNTKSFEDIHHYREQIKRVKDSED-VPMVLVGNKCDLPS-RTVDTKQAQDL 613
EGFL VF+I +SF +REQI RVK ED +P+++VGNK DL R V ++A+
Sbjct: 87 EGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARAK 146
Query: 614 ARSYGIPFIETSAKTRQGVDDAFYTLVREIR 706
A +G+ ++ETSAKTR VD F+ L+REIR
Sbjct: 147 AEEWGVQYVETSAKTRANVDKVFFDLMREIR 177
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 18,568,307
Number of extensions: 541067
Number of successful extensions: 1065
Number of sequences better than 1.0e-05: 108
Number of HSP's gapped: 985
Number of HSP's successfully gapped: 108
Length of query: 339
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 239
Effective length of database: 8,854,232
Effective search space: 2116161448
Effective search space used: 2116161448
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013925
(1019 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_067259.4| GTPase KRas [Mus musculus]. 308 3e-84
Alignment gi|NP_001123915.1| GTPase HRas isoform 1 [Mus musculus]. 295 5e-80
Alignment gi|NP_032310.2| GTPase HRas isoform 1 [Mus musculus]. 295 5e-80
Alignment gi|NP_035067.2| GTPase NRas precursor [Mus musculus]. 291 7e-79
Alignment gi|NP_001123916.1| GTPase HRas isoform 2 [Mus musculus]. 271 6e-73
Alignment gi|NP_080122.2| ras-related protein R-Ras2 precursor [Mus muscu... 178 7e-45
Alignment gi|NP_077777.1| ras-related protein Rap-1b precursor [Mus muscu... 177 9e-45
Alignment gi|NP_663516.1| ras-related protein Rap-1A precursor [Mus muscu... 177 9e-45
Alignment gi|NP_062364.3| ras-related protein Ral-A precursor [Mus muscul... 169 3e-42
Alignment gi|NP_071722.1| ras-related protein Ral-B precursor [Mus muscul... 162 5e-40
>ref|NP_067259.4| GTPase KRas [Mus musculus].
Length = 188
Score = 308 bits (790), Expect = 3e-84
Identities = 154/164 (93%), Positives = 155/164 (94%)
Frame = +2
Query: 215 MTEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 394
MTEYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 395 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 574
QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 120
Query: 575 PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 706
PSRTVDTKQAQ+LARSYGIPFIETSAKTRQGVDDAFYTLVREIR
Sbjct: 121 PSRTVDTKQAQELARSYGIPFIETSAKTRQGVDDAFYTLVREIR 164
>ref|NP_001123915.1| GTPase HRas isoform 1 [Mus musculus].
Length = 189
Score = 295 bits (754), Expect = 5e-80
Identities = 146/164 (89%), Positives = 153/164 (93%)
Frame = +2
Query: 215 MTEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 394
MTEYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 395 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 574
QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH YREQIKRVKDS+DVPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 575 PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 706
+RTV+++QAQDLARSYGIP+IETSAKTRQGV+DAFYTLVREIR
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>ref|NP_032310.2| GTPase HRas isoform 1 [Mus musculus].
Length = 189
Score = 295 bits (754), Expect = 5e-80
Identities = 146/164 (89%), Positives = 153/164 (93%)
Frame = +2
Query: 215 MTEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 394
MTEYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 395 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 574
QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH YREQIKRVKDS+DVPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 575 PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 706
+RTV+++QAQDLARSYGIP+IETSAKTRQGV+DAFYTLVREIR
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>ref|NP_035067.2| GTPase NRas precursor [Mus musculus].
Length = 189
Score = 291 bits (744), Expect = 7e-79
Identities = 145/164 (88%), Positives = 152/164 (92%)
Frame = +2
Query: 215 MTEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 394
MTEYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 395 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 574
QEEYSAMRDQYMRTGEGFLCVFAINN+KSF DI+ YREQIKRVKDS+DVPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 575 PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 706
P+RTVDTKQA +LA+SYGIPFIETSAKTRQGV+DAFYTLVREIR
Sbjct: 121 PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIR 164
>ref|NP_001123916.1| GTPase HRas isoform 2 [Mus musculus].
Length = 188
Score = 271 bits (693), Expect = 6e-73
Identities = 134/151 (88%), Positives = 140/151 (92%)
Frame = +2
Query: 215 MTEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 394
MTEYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 395 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 574
QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH YREQIKRVKDS+DVPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 575 PSRTVDTKQAQDLARSYGIPFIETSAKTRQG 667
+RTV+++QAQDLARSYGIP+IETSAKTRQG
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQG 151
>ref|NP_080122.2| ras-related protein R-Ras2 precursor [Mus musculus].
Length = 204
Score = 178 bits (451), Expect = 7e-45
Identities = 91/163 (55%), Positives = 115/163 (70%), Gaps = 1/163 (0%)
Frame = +2
Query: 221 EYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 400
+Y+L KSALTIQ IQ++FV +YDPTIEDSY KQ VID LDILDTAGQE
Sbjct: 14 KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQE 73
Query: 401 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP- 577
E+ AMR+QYMRTGEGFL VF++ + SFE+I+ ++ QI RVKD ++ PM+L+GNK DL
Sbjct: 74 EFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDH 133
Query: 578 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 706
R V ++ Q LAR + ++E SAK R VD AF+ LVR IR
Sbjct: 134 QRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIR 176
>ref|NP_077777.1| ras-related protein Rap-1b precursor [Mus musculus].
Length = 184
Score = 177 bits (450), Expect = 9e-45
Identities = 89/165 (53%), Positives = 119/165 (72%), Gaps = 2/165 (1%)
Frame = +2
Query: 215 MTEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 394
M EYKL KSALT+Q +Q FV++YDPTIEDSYRKQV +D + C+L+ILDTAG
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAG 60
Query: 395 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 574
E+++AMRD YM+ G+GF V++I +F D+ REQI RVKD++DVPM+LVGNKCDL
Sbjct: 61 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDL 120
Query: 575 -PSRTVDTKQAQDLARSY-GIPFIETSAKTRQGVDDAFYTLVREI 703
R V +Q Q+LAR + F+E+SAK++ V++ FY LVR+I
Sbjct: 121 EDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165
>ref|NP_663516.1| ras-related protein Rap-1A precursor [Mus musculus].
Length = 184
Score = 177 bits (450), Expect = 9e-45
Identities = 90/165 (54%), Positives = 119/165 (72%), Gaps = 2/165 (1%)
Frame = +2
Query: 215 MTEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 394
M EYKL KSALT+Q +Q FV++YDPTIEDSYRKQV +D + C+L+ILDTAG
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAG 60
Query: 395 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 574
E+++AMRD YM+ G+GF V++I +F D+ REQI RVKD+EDVPM+LVGNKCDL
Sbjct: 61 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL 120
Query: 575 -PSRTVDTKQAQDLARSY-GIPFIETSAKTRQGVDDAFYTLVREI 703
R V +Q Q+LAR + F+E+SAK++ V++ FY LVR+I
Sbjct: 121 EDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>ref|NP_062364.3| ras-related protein Ral-A precursor [Mus musculus].
Length = 206
Score = 169 bits (428), Expect = 3e-42
Identities = 85/172 (49%), Positives = 119/172 (69%), Gaps = 1/172 (0%)
Frame = +2
Query: 194 RERGLLKMTEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLL 373
+ +G + +K+ KSALT+Q + + FV++Y+PT DSYRK+VV+DGE +
Sbjct: 5 KPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQI 64
Query: 374 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVL 553
DILDTAGQE+Y+A+RD Y R+GEGFLCVF+I +SF +REQI RVK+ E+VP +L
Sbjct: 65 DILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLL 124
Query: 554 VGNKCDL-PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 706
VGNK DL R V ++A++ A + + ++ETSAKTR VD F+ L+REIR
Sbjct: 125 VGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIR 176
>ref|NP_071722.1| ras-related protein Ral-B precursor [Mus musculus].
Length = 206
Score = 162 bits (409), Expect = 5e-40
Identities = 82/151 (54%), Positives = 110/151 (72%), Gaps = 2/151 (1%)
Frame = +2
Query: 260 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 439
KSALT+Q + + FV++Y+PT DSYRK+VV+DGE +DILDTAGQE+Y+A+RD Y R+G
Sbjct: 27 KSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG 86
Query: 440 EGFLCVFAINNTKSFEDIHHYREQIKRVKDSED-VPMVLVGNKCDLPS-RTVDTKQAQDL 613
EGFL VF+I +SF +REQI RVK ED +P+++VGNK DL R V +A+
Sbjct: 87 EGFLLVFSITEHESFTATAEFREQILRVKSEEDKIPLLVVGNKSDLEERRQVPVDEARGK 146
Query: 614 ARSYGIPFIETSAKTRQGVDDAFYTLVREIR 706
A +G+ ++ETSAKTR VD F+ L+REIR
Sbjct: 147 AEEWGVQYVETSAKTRANVDKVFFDLMREIR 177
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 24,036,790
Number of extensions: 502502
Number of successful extensions: 1483
Number of sequences better than 1.0e-05: 134
Number of HSP's gapped: 1382
Number of HSP's successfully gapped: 134
Length of query: 339
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 237
Effective length of database: 12,553,887
Effective search space: 2975271219
Effective search space used: 2975271219
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013925
(1019 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004976.2| GTPase KRas isoform b precursor [Homo sapiens]. 310 1e-84
Alignment gi|NP_203524.1| GTPase KRas isoform a precursor [Homo sapiens]. 305 3e-83
Alignment gi|NP_001123914.1| GTPase HRas isoform 1 [Homo sapiens]. 295 6e-80
Alignment gi|NP_005334.1| GTPase HRas isoform 1 [Homo sapiens]. 295 6e-80
Alignment gi|NP_002515.1| GTPase NRas [Homo sapiens]. 291 9e-79
Alignment gi|NP_789765.1| GTPase HRas isoform 2 [Homo sapiens]. 271 7e-73
Alignment gi|NP_036382.2| ras-related protein R-Ras2 isoform a [Homo sapi... 178 8e-45
Alignment gi|NP_001010942.1| ras-related protein Rap-1b precursor [Homo s... 177 1e-44
Alignment gi|NP_056461.1| ras-related protein Rap-1b precursor [Homo sapi... 177 1e-44
Alignment gi|NP_001010935.1| ras-related protein Rap-1A precursor [Homo s... 177 1e-44
>ref|NP_004976.2| GTPase KRas isoform b precursor [Homo sapiens].
Length = 188
Score = 310 bits (795), Expect = 1e-84
Identities = 158/188 (84%), Positives = 159/188 (84%)
Frame = +2
Query: 215 MTEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 394
MTEYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 395 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 574
QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 120
Query: 575 PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRXXXXXXXXXXXXXXXX 754
PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR
Sbjct: 121 PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKDGKKKKKK 180
Query: 755 XXXXCIIM 778
C+IM
Sbjct: 181 SKTKCVIM 188
>ref|NP_203524.1| GTPase KRas isoform a precursor [Homo sapiens].
Length = 189
Score = 305 bits (782), Expect = 3e-83
Identities = 153/164 (93%), Positives = 154/164 (93%)
Frame = +2
Query: 215 MTEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 394
MTEYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 395 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 574
QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 120
Query: 575 PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 706
PSRTVDTKQAQDLARSYGIPFIETSAKTRQ V+DAFYTLVREIR
Sbjct: 121 PSRTVDTKQAQDLARSYGIPFIETSAKTRQRVEDAFYTLVREIR 164
>ref|NP_001123914.1| GTPase HRas isoform 1 [Homo sapiens].
Length = 189
Score = 295 bits (754), Expect = 6e-80
Identities = 146/164 (89%), Positives = 153/164 (93%)
Frame = +2
Query: 215 MTEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 394
MTEYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 395 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 574
QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH YREQIKRVKDS+DVPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 575 PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 706
+RTV+++QAQDLARSYGIP+IETSAKTRQGV+DAFYTLVREIR
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>ref|NP_005334.1| GTPase HRas isoform 1 [Homo sapiens].
Length = 189
Score = 295 bits (754), Expect = 6e-80
Identities = 146/164 (89%), Positives = 153/164 (93%)
Frame = +2
Query: 215 MTEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 394
MTEYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 395 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 574
QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH YREQIKRVKDS+DVPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 575 PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 706
+RTV+++QAQDLARSYGIP+IETSAKTRQGV+DAFYTLVREIR
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>ref|NP_002515.1| GTPase NRas [Homo sapiens].
Length = 189
Score = 291 bits (744), Expect = 9e-79
Identities = 145/164 (88%), Positives = 152/164 (92%)
Frame = +2
Query: 215 MTEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 394
MTEYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 395 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 574
QEEYSAMRDQYMRTGEGFLCVFAINN+KSF DI+ YREQIKRVKDS+DVPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 575 PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 706
P+RTVDTKQA +LA+SYGIPFIETSAKTRQGV+DAFYTLVREIR
Sbjct: 121 PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIR 164
>ref|NP_789765.1| GTPase HRas isoform 2 [Homo sapiens].
Length = 170
Score = 271 bits (693), Expect = 7e-73
Identities = 134/151 (88%), Positives = 140/151 (92%)
Frame = +2
Query: 215 MTEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 394
MTEYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 395 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 574
QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH YREQIKRVKDS+DVPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 575 PSRTVDTKQAQDLARSYGIPFIETSAKTRQG 667
+RTV+++QAQDLARSYGIP+IETSAKTRQG
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQG 151
>ref|NP_036382.2| ras-related protein R-Ras2 isoform a [Homo sapiens].
Length = 204
Score = 178 bits (451), Expect = 8e-45
Identities = 91/163 (55%), Positives = 115/163 (70%), Gaps = 1/163 (0%)
Frame = +2
Query: 221 EYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 400
+Y+L KSALTIQ IQ++FV +YDPTIEDSY KQ VID LDILDTAGQE
Sbjct: 14 KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQE 73
Query: 401 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP- 577
E+ AMR+QYMRTGEGFL VF++ + SFE+I+ ++ QI RVKD ++ PM+L+GNK DL
Sbjct: 74 EFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDH 133
Query: 578 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 706
R V ++ Q LAR + ++E SAK R VD AF+ LVR IR
Sbjct: 134 QRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIR 176
>ref|NP_001010942.1| ras-related protein Rap-1b precursor [Homo sapiens].
Length = 184
Score = 177 bits (450), Expect = 1e-44
Identities = 89/165 (53%), Positives = 119/165 (72%), Gaps = 2/165 (1%)
Frame = +2
Query: 215 MTEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 394
M EYKL KSALT+Q +Q FV++YDPTIEDSYRKQV +D + C+L+ILDTAG
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAG 60
Query: 395 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 574
E+++AMRD YM+ G+GF V++I +F D+ REQI RVKD++DVPM+LVGNKCDL
Sbjct: 61 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDL 120
Query: 575 -PSRTVDTKQAQDLARSY-GIPFIETSAKTRQGVDDAFYTLVREI 703
R V +Q Q+LAR + F+E+SAK++ V++ FY LVR+I
Sbjct: 121 EDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165
>ref|NP_056461.1| ras-related protein Rap-1b precursor [Homo sapiens].
Length = 184
Score = 177 bits (450), Expect = 1e-44
Identities = 89/165 (53%), Positives = 119/165 (72%), Gaps = 2/165 (1%)
Frame = +2
Query: 215 MTEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 394
M EYKL KSALT+Q +Q FV++YDPTIEDSYRKQV +D + C+L+ILDTAG
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAG 60
Query: 395 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 574
E+++AMRD YM+ G+GF V++I +F D+ REQI RVKD++DVPM+LVGNKCDL
Sbjct: 61 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDL 120
Query: 575 -PSRTVDTKQAQDLARSY-GIPFIETSAKTRQGVDDAFYTLVREI 703
R V +Q Q+LAR + F+E+SAK++ V++ FY LVR+I
Sbjct: 121 EDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165
>ref|NP_001010935.1| ras-related protein Rap-1A precursor [Homo sapiens].
Length = 184
Score = 177 bits (450), Expect = 1e-44
Identities = 90/165 (54%), Positives = 119/165 (72%), Gaps = 2/165 (1%)
Frame = +2
Query: 215 MTEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 394
M EYKL KSALT+Q +Q FV++YDPTIEDSYRKQV +D + C+L+ILDTAG
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAG 60
Query: 395 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 574
E+++AMRD YM+ G+GF V++I +F D+ REQI RVKD+EDVPM+LVGNKCDL
Sbjct: 61 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL 120
Query: 575 -PSRTVDTKQAQDLARSY-GIPFIETSAKTRQGVDDAFYTLVREI 703
R V +Q Q+LAR + F+E+SAK++ V++ FY LVR+I
Sbjct: 121 EDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 27,975,399
Number of extensions: 575926
Number of successful extensions: 1760
Number of sequences better than 1.0e-05: 176
Number of HSP's gapped: 1643
Number of HSP's successfully gapped: 176
Length of query: 339
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 236
Effective length of database: 14,901,872
Effective search space: 3516841792
Effective search space used: 3516841792
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013925
(1019 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 359 2e-96
Sscrofa_Chr04 113 2e-22
>Sscrofa_Chr05
|| Length = 111506441
Score = 359 bits (181), Expect = 2e-96
Identities = 181/181 (100%)
Strand = Plus / Plus
Query: 324 aggattcctacaggaaacaagtagtaattgatggagaaacctgtctcttggatattctcg 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52251617 aggattcctacaggaaacaagtagtaattgatggagaaacctgtctcttggatattctcg 52251676
Query: 384 acacagcaggtcaagaggagtacagtgcaatgagggaccagtacatgaggactggggagg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52251677 acacagcaggtcaagaggagtacagtgcaatgagggaccagtacatgaggactggggagg 52251736
Query: 444 gctttctttgtgtatttgccataaataatactaagtcatttgaagatattcaccattata 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52251737 gctttctttgtgtatttgccataaataatactaagtcatttgaagatattcaccattata 52251796
Query: 504 g 504
|
Sbjct: 52251797 g 52251797
Score = 351 bits (177), Expect = 5e-94
Identities = 180/181 (99%)
Strand = Plus / Plus
Query: 767 tgtataattatgtaaatacaatttgtacttttttcttaaggcatacttaagtaaaagtgg 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52265800 tgtataattatgtaaatacaatttgtacttttttcttaaggcatacttaagtaaaagtgg 52265859
Query: 827 taatttttgtacattacactaaattattagcatttgttttagcattacctaattttcttt 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52265860 taatttttgtacattacactaaattattagcatttgttttagcattacctaattttcttt 52265919
Query: 887 ctgctccatccatactgttagcttttatcttgaatgcttattttaaaatgacaggggaaa 946
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 52265920 ctgctccatccatactgttagcttttatcttgaatgcttattttaaaatgacagtggaaa 52265979
Query: 947 c 947
|
Sbjct: 52265980 c 52265980
Score = 323 bits (163), Expect = 1e-85
Identities = 163/163 (100%)
Strand = Plus / Plus
Query: 503 agagaacaaataaaaagagttaaagactctgaagatgtacctatggtcctagtaggaaat 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52253232 agagaacaaataaaaagagttaaagactctgaagatgtacctatggtcctagtaggaaat 52253291
Query: 563 aaatgtgatttgccttctagaacagtagacacaaaacaggctcaggacttagcaagaagt 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52253292 aaatgtgatttgccttctagaacagtagacacaaaacaggctcaggacttagcaagaagt 52253351
Query: 623 tatggaattccttttattgaaacatcagcaaagacaagacagg 665
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52253352 tatggaattccttttattgaaacatcagcaaagacaagacagg 52253394
Score = 248 bits (125), Expect = 5e-63
Identities = 125/125 (100%)
Strand = Plus / Plus
Query: 202 aggcctgctgaaaatgactgaatataaacttgtggtagttggagctggtggcgtaggcaa 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52234162 aggcctgctgaaaatgactgaatataaacttgtggtagttggagctggtggcgtaggcaa 52234221
Query: 262 gagtgccttgacaatacagctaattcagaatcactttgtggatgaatatgatcctacgat 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52234222 gagtgccttgacaatacagctaattcagaatcactttgtggatgaatatgatcctacgat 52234281
Query: 322 agagg 326
|||||
Sbjct: 52234282 agagg 52234286
Score = 222 bits (112), Expect = 3e-55
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 93 tcggccagtactcccggcccccgccatttcggactgggagctagcgcggcgcaggcactg 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52229661 tcggccagtactcccggcccccgccatttcggactgggagctagcgcggcgcaggcactg 52229720
Query: 153 aaggcggcggcgggggccaaaggctcggcggctcccaggtgcgggagagagg 204
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52229721 aaggcggcggcgggggccaaaggctcggcggctcccaggtgcgggagagagg 52229772
Score = 69.9 bits (35), Expect = 3e-09
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 662 cagggtgttgacgatgccttctatacattagttcg 696
|||||||||||||||||||||||||||||||||||
Sbjct: 52265695 cagggtgttgacgatgccttctatacattagttcg 52265729
>Sscrofa_Chr04
|| Length = 143465943
Score = 113 bits (57), Expect = 2e-22
Identities = 120/141 (85%)
Strand = Plus / Plus
Query: 353 gatggagaaacctgtctcttggatattctcgacacagcaggtcaagaggagtacagtgca 412
||||| |||||||| || ||||| || || || ||||| || |||||||||||||||||
Sbjct: 116037716 gatggtgaaacctgcctgttggacatactggatacagctggacaagaggagtacagtgcc 116037775
Query: 413 atgagggaccagtacatgaggactggggagggctttctttgtgtatttgccataaataat 472
||||| ||||| ||||||||||| || || ||||| ||||||||||||||||| ||||||
Sbjct: 116037776 atgagagaccaatacatgaggacaggcgaaggcttcctttgtgtatttgccatcaataat 116037835
Query: 473 actaagtcatttgaagatatt 493
| || ||||||| |||||||
Sbjct: 116037836 agcaaatcatttgcagatatt 116037856
Score = 83.8 bits (42), Expect = 2e-13
Identities = 96/114 (84%)
Strand = Plus / Plus
Query: 213 aaatgactgaatataaacttgtggtagttggagctggtggcgtaggcaagagtgccttga 272
|||||||||| || ||||| ||||| |||||||| ||||| || || || || || |||
Sbjct: 116035272 aaatgactgagtacaaactggtggtggttggagcaggtggtgttgggaaaagcgcactga 116035331
Query: 273 caatacagctaattcagaatcactttgtggatgaatatgatcctacgatagagg 326
|||| |||||||| ||||| |||||||| |||||||||||||| || |||||||
Sbjct: 116035332 caatccagctaatccagaaccactttgtagatgaatatgatcccaccatagagg 116035385
Score = 65.9 bits (33), Expect = 4e-08
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 524 aaagactctgaagatgtacctatggtcctagtaggaaataaatgtgatttgcc 576
|||||||| || |||||||||||||| ||||||||||| || |||||||||||
Sbjct: 116040311 aaagactcagatgatgtacctatggtgctagtaggaaacaagtgtgatttgcc 116040363
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,525,453
Number of extensions: 250
Number of successful extensions: 250
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 250
Number of HSP's successfully gapped: 9
Length of query: 1019
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 998
Effective length of database: 2,808,413,156
Effective search space: 2802796329688
Effective search space used: 2802796329688
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)