Animal-Genome cDNA 20110601C-013943

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013943
         (1830 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001039572.2| sorting nexin-1 [Bos taurus].                     902   0.0  
Alignment   gi|NP_001033608.1| sorting nexin-2 [Bos taurus].                     558   e-159
Alignment   gi|NP_001157409.1| sorting nexin 7 [Bos taurus].                      99   2e-20
Alignment   gi|NP_001029636.1| sorting nexin-5 [Bos taurus].                      96   1e-19
Alignment   gi|NP_001193667.1| sorting nexin family member 30 [Bos taurus].       84   3e-16
Alignment   gi|NP_001096727.1| sorting nexin-12 [Bos taurus].                     74   6e-13
Alignment   gi|NP_001073246.1| sorting nexin-3 [Bos taurus].                      71   3e-12
Alignment   gi|NP_001070372.1| sorting nexin-11 [Bos taurus].                     59   1e-08
Alignment   gi|NP_001039796.1| sorting nexin 6 [Bos taurus].                      54   4e-07
Alignment   gi|NP_001179950.1| serine/threonine-protein kinase Sgk3 [Bos ta...    50   9e-06

>ref|NP_001039572.2| sorting nexin-1 [Bos taurus].
          Length = 522

 Score =  902 bits (2332), Expect = 0.0
 Identities = 466/522 (89%), Positives = 474/522 (90%)
 Frame = +3

Query: 36   MASGGGGCSAXXXXXXXXXXXXXXXXGATGGSEPEAGDSDTEGEDIFTGAAAASKPQSPK 215
            MASGGGGCSA                GA GGSEPEAGDSDTEGEDIFTGAAA SKPQSPK
Sbjct: 1    MASGGGGCSASERLPPPFPGLEPESEGAVGGSEPEAGDSDTEGEDIFTGAAAVSKPQSPK 60

Query: 216  RIASLLPINNGSKENGIHEEQDQEPQDLFADATVELSLDSTQNNQKKLPAKTLISLPPQE 395
            RIASLLPIN+GSKENGIHEEQDQEPQDLFADATVELSLDSTQNNQKK+PAKTLISLPPQE
Sbjct: 61   RIASLLPINSGSKENGIHEEQDQEPQDLFADATVELSLDSTQNNQKKVPAKTLISLPPQE 120

Query: 396  ATNSSKLQPSYXXXXXXXXXXXXXXTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQ 575
            ATNSSK QPSY              TVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSK 
Sbjct: 121  ATNSSKPQPSYEELEEEEQEDQFDLTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKH 180

Query: 576  FSVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRA 755
            F+VKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRA
Sbjct: 181  FAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRA 240

Query: 756  ALERYLQRIVNHPTMVQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTI 935
            ALERYLQRIVNHPTM+QDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTI
Sbjct: 241  ALERYLQRIVNHPTMLQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTI 300

Query: 936  KMNESDIWFXXXXXXXXXXXQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDN 1115
             MNESDIWF           QRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDN
Sbjct: 301  NMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDN 360

Query: 1116 TALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRW 1295
            TALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRW
Sbjct: 361  TALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRW 420

Query: 1296 QDAQATLQKKREAEARLLWANKPDKLQQAKDEIIEWESRVTQYERDFERISTVVRKEVIR 1475
            QDAQ TLQKKREAEARLLWANKPDKLQQAKDEI+EWESRVTQYERDFERISTVVRKEVIR
Sbjct: 421  QDAQTTLQKKREAEARLLWANKPDKLQQAKDEIVEWESRVTQYERDFERISTVVRKEVIR 480

Query: 1476 FEKEKSKDFENHVIKYLETLLYSQQQLAKYWEAFLPEAKAIS 1601
            FEKEKS+DF NHVI+YLETLL+SQQQLAKYWEAFLPEAKAIS
Sbjct: 481  FEKEKSRDFRNHVIQYLETLLHSQQQLAKYWEAFLPEAKAIS 522


>ref|NP_001033608.1| sorting nexin-2 [Bos taurus].
          Length = 519

 Score =  558 bits (1437), Expect = e-159
 Identities = 300/510 (58%), Positives = 370/510 (72%), Gaps = 17/510 (3%)
 Frame = +3

Query: 123  GGSEPEAGDSDTEGEDIFTGAAAA--SKPQSPKRIASLLPINNGSKENGIHEEQ---DQE 287
            G  +P   +   +GED+FT   +   S P SP   AS L  +  +  NG    +   D +
Sbjct: 11   GDGKPTDFEELEDGEDLFTSTVSTLESSPSSPDP-ASFLAEDISTNSNGPKPAEVALDDD 69

Query: 288  PQDLFADATVELSLDSTQN----NQKKLPAKTLIS-----LPPQEATNSSK---LQPSYX 431
             +DLFA+AT E+SLDS +     + +  PA T ++      P  E+ + S       S  
Sbjct: 70   REDLFAEATEEVSLDSPEREPILSSETSPAVTPVTPTTLIAPRIESKSMSAPVIFDRSRD 129

Query: 432  XXXXXXXXXXXXXTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQFSVKRRFSDFLG 611
                          +G++DPEK+GDGMNAY+AY+VTT+TSL MF   +FSVKRRFSDFLG
Sbjct: 130  EIEEEANGDVFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLG 189

Query: 612  LYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNH 791
            L+ KL+ K+   G+IVPP PEKS++GMTKVKVGKEDSSS EF+EKRRAALERYLQR V H
Sbjct: 190  LHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKH 249

Query: 792  PTMVQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFXXX 971
            PT++QDPD+R+FLE  ELPRAV TQ LSGAG+L+M NKA DAV+KMTIKMNESD WF   
Sbjct: 250  PTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKAADAVNKMTIKMNESDAWFEEK 309

Query: 972  XXXXXXXXQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAE 1151
                    Q+LRKLHA VE LV HRKEL+ NTA FAKS AMLG+SED+TALSRALSQLAE
Sbjct: 310  QQQFENQDQQLRKLHASVEALVCHRKELSANTAAFAKSAAMLGNSEDHTALSRALSQLAE 369

Query: 1152 VEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKRE 1331
            VEEKI+QLHQEQA  DF++ +ELLSDYIRL+A V+  FD R+K WQ+W+DAQ TL KKRE
Sbjct: 370  VEEKIDQLHQEQAFADFYMFSELLSDYIRLIAAVKGVFDHRVKCWQKWEDAQITLLKKRE 429

Query: 1332 AEARLLWANKPDKLQQAKDEIIEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFENH 1511
             EA+++ ANKPDK+QQAK+EI EWE++V Q ERDFE+IS  +RKEV RFEKE+ KDF+  
Sbjct: 430  TEAKMMVANKPDKIQQAKNEIREWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTV 489

Query: 1512 VIKYLETLLYSQQQLAKYWEAFLPEAKAIS 1601
            +IKYLE+L+ +QQQL KYWEAFLPEAKAI+
Sbjct: 490  IIKYLESLVQTQQQLIKYWEAFLPEAKAIA 519


>ref|NP_001157409.1| sorting nexin 7 [Bos taurus].
          Length = 451

 Score = 98.6 bits (244), Expect = 2e-20
 Identities = 93/391 (23%), Positives = 170/391 (43%), Gaps = 1/391 (0%)
 Frame = +3

Query: 474  VGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQFSVKRRFSDFLGLYEKLSEKHSQNGF 653
            + + +PE     +  ++ Y++ T+TS   F S +F V+RR+ DFL L EKL E H     
Sbjct: 98   ITVDEPESHVTTIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKEKLEEAHPT--L 155

Query: 654  IVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMVQDPDVREFLE 833
            I+PP PEK ++       G  +  + +F+E RR AL ++L RI +HPT+  + D + FL 
Sbjct: 156  IIPPLPEKFIV------KGMVERFNDDFIETRRKALHKFLNRIADHPTLTFNEDFKIFLT 209

Query: 834  KEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFXXXXXXXXXXXQRLRKL 1013
             +       +    G GLL    ++  AV+     +      F           Q++  +
Sbjct: 210  AQ--ASEFSSHKKQGPGLLSRMGQSVRAVALSMRGVKSRPEEFMEMNNFIEIFSQKINLI 267

Query: 1014 HAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQEQAN 1193
              + + +    +E      ++     +  +SE++  L+  L  +A   +K  +  +++ +
Sbjct: 268  DKISQRIYKEEREYLDEMKEYGPIHILWSASEED--LADTLKSVASCIDKCCKATEKRMS 325

Query: 1194 NDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWANKPDKL 1373
                 L  ++ +Y+    ++ A   +R          QA L  K EA    L + K D  
Sbjct: 326  GFSEALLPVVHEYVLYSEMLMAVMKRR-------DQIQAELDSKVEA----LTSKKAD-T 373

Query: 1374 QQAKDEIIEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFENHVIKYL-ETLLYSQQ 1550
                +EI + E +V       E  +  ++ +  R+++    D ++       E +LY +Q
Sbjct: 374  DLLTEEIGKLEDKV-------ECANNALKADWERWKQNMQNDIKSAFTNMAEENILYYEQ 426

Query: 1551 QLAKYWEAFLPEAKAIS*RTEDTRAHLPDAA 1643
             LA  WE+FL         T  T  HL +A+
Sbjct: 427  CLAT-WESFL---------TSQTDLHLEEAS 447


>ref|NP_001029636.1| sorting nexin-5 [Bos taurus].
          Length = 404

 Score = 95.5 bits (236), Expect = 1e-19
 Identities = 91/362 (25%), Positives = 166/362 (45%), Gaps = 26/362 (7%)
 Frame = +3

Query: 522  VAYKVTTQTSLPMFRSKQFSVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLI----- 686
            V + V T+T+LP F+S +FSV R+  DF+ L++ L E     G I+PP P K        
Sbjct: 45   VKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLIETTDYAGLIIPPAPTKPDFDGPRE 104

Query: 687  ----------GMTKVKVGK-EDSSSAEFL---EKRRAALERYLQRIVNHPTMVQDPDVRE 824
                       MTK +  K +    AE+L   +K  ++ E +LQR+ +HP + +D +   
Sbjct: 105  KMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHV 164

Query: 825  FLEKEE--LPRAVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFXXXXXXXXXXXQ 998
            FLE ++    R   T+ + G G  K   K+ D V    +K  E D +F            
Sbjct: 165  FLEYDQDLSVRRKNTKEMFG-GFFKSVVKSADEVLFSGVK--EVDDFFEQEKTFLINYYN 221

Query: 999  RLRKLHAVVETLVNHRKELA---LNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIE 1169
            R++   A  + +    K +A   ++TA    SLA+    E+ T + + L ++AE+ EK+ 
Sbjct: 222  RIKDSCAKADRMTRSHKNVADDYIHTAACLHSLAL----EEPTVIKKYLLKVAELFEKLR 277

Query: 1170 QLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKR--EAEAR 1343
            ++    ++++   L ELL  Y+  +   +    +R K    ++++   L K R    + +
Sbjct: 278  KVESRVSSDEDLKLTELLRYYMLNIEAAKDLLYRRTKALIDYENSNKALDKARLKSRDVK 337

Query: 1344 LLWANKPDKLQQAKDEIIEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFENHVIKY 1523
            L  A++ +  Q+                  FE++S   + E+I F++++   F  ++I+ 
Sbjct: 338  LAEAHQQECCQK------------------FEQLSESAKDELINFKRKRVAAFRKNLIEM 379

Query: 1524 LE 1529
             E
Sbjct: 380  SE 381


>ref|NP_001193667.1| sorting nexin family member 30 [Bos taurus].
          Length = 437

 Score = 84.3 bits (207), Expect = 3e-16
 Identities = 80/370 (21%), Positives = 159/370 (42%)
 Frame = +3

Query: 474  VGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQFSVKRRFSDFLGLYEKLSEKHSQNGF 653
            V + DP+K    M  Y+ Y++TT+++   F   ++SV+RR+ DF  L  KL E  SQ   
Sbjct: 93   VTVDDPKKHVCTMETYITYRITTKSTRVEFDLPEYSVRRRYQDFDWLRNKLEE--SQPTH 150

Query: 654  IVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMVQDPDVREFLE 833
            ++PP PEK ++       G  D  S EF+E RR AL+++L+RI +HP +  +     FL 
Sbjct: 151  LIPPLPEKFVV------KGVVDRFSEEFVETRRKALDKFLKRITDHPVLSFNEHFNVFLT 204

Query: 834  KEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFXXXXXXXXXXXQRLRKL 1013
             ++L          G  LL    ++   V+    K+    + F            +L  +
Sbjct: 205  AKDL----NAHKKQGMALLTRVGESVKHVAG-GYKLRNRPLEFAAIGEYLDTFALKLGTI 259

Query: 1014 HAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQEQAN 1193
              + + ++    E  +   ++    +   + E          +LAE  E +         
Sbjct: 260  DRIAQRIIKEEIEYLVELREYGPVYSTWSALE---------GELAEPLEGVSAC----IG 306

Query: 1194 NDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWANKPDKL 1373
            N    L EL  D       +   F   ++ +  + D+  ++ KKR+ + +  +  K + +
Sbjct: 307  NCSTALEELTDD-------MTEDFLPVLREYILYSDSMKSVLKKRD-QVQAEYETKLEAV 358

Query: 1374 QQAKDEIIEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFENHVIKYLETLLYSQQQ 1553
               K+E  +  + V + +   E  +  ++ ++ R++  K +DF   ++   +  +   ++
Sbjct: 359  ALKKEERPKVPADVEKCQDRMECFNADLKADMERWQNNKRQDFRQLLMGMADKNIQYYEK 418

Query: 1554 LAKYWEAFLP 1583
                WE+ +P
Sbjct: 419  CLMAWESIIP 428


>ref|NP_001096727.1| sorting nexin-12 [Bos taurus].
          Length = 162

 Score = 73.6 bits (179), Expect = 6e-13
 Identities = 42/126 (33%), Positives = 72/126 (57%)
 Frame = +3

Query: 474 VGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQFSVKRRFSDFLGLYEKLSEKHSQNGF 653
           + I +P+ +G G   +  Y+V  +T+LP+F+ K+  V+RR+SDF  L  +L E+ S+   
Sbjct: 32  IDIFNPQTVGVGRARFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNEL-ERDSK--I 88

Query: 654 IVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMVQDPDVREFLE 833
           +VPP P K+L      + G E      F+E+RR  LE+++ +I  HP    +  +  FL+
Sbjct: 89  VVPPLPGKALKRQLPFR-GDEGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQ 147

Query: 834 KEELPR 851
           +E + R
Sbjct: 148 EEAIDR 153


>ref|NP_001073246.1| sorting nexin-3 [Bos taurus].
          Length = 162

 Score = 71.2 bits (173), Expect = 3e-12
 Identities = 34/127 (26%), Positives = 72/127 (56%)
 Frame = +3

Query: 474 VGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQFSVKRRFSDFLGLYEKLSEKHSQNGF 653
           + +++P+ +G G   +  Y++  +T+LP+F+ K+ +V+RR+SDF  L    SE   ++  
Sbjct: 31  IDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWL---RSELERESKV 87

Query: 654 IVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMVQDPDVREFLE 833
           +VPP P K+ +     + G +      F+E+R+  LE+++ ++  HP    +  +  FL+
Sbjct: 88  VVPPLPGKAFLRQLPFR-GDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQ 146

Query: 834 KEELPRA 854
            E + ++
Sbjct: 147 DEIIDKS 153


>ref|NP_001070372.1| sorting nexin-11 [Bos taurus].
          Length = 270

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 39/126 (30%), Positives = 65/126 (51%), Gaps = 3/126 (2%)
 Frame = +3

Query: 471 TVGITDPEKIGDGM-NAYVAYKVTTQTSLPMFRSKQFSVKRRFSDFLGLYEKLSEKHSQN 647
           TV + DP    +G  N+YV YK+   T+   F +K   V+RR+ +F+ L ++L     +N
Sbjct: 18  TVRVQDPRVQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRKQLQ----RN 73

Query: 648 GFIVPPP--PEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMVQDPDVR 821
             +VP P  P KS              SS EF+EKRR  L+ +L++++    ++ D  + 
Sbjct: 74  AGLVPVPELPGKSTFF----------GSSDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLH 123

Query: 822 EFLEKE 839
            FL+ +
Sbjct: 124 LFLQSQ 129


>ref|NP_001039796.1| sorting nexin 6 [Bos taurus].
          Length = 244

 Score = 54.3 bits (129), Expect = 4e-07
 Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 19/123 (15%)
 Frame = +3

Query: 522 VAYKVTTQTSLPMFRSKQFSVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKV 701
           V + V T++SLP F+  +FSV R+  +F+ L++   E     G+I+PP P +     ++ 
Sbjct: 46  VKFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFIENEDYAGYIIPPAPPRPDFDASRE 105

Query: 702 KVGK----EDSSSAEFLEKRRAALER---------------YLQRIVNHPTMVQDPDVRE 824
           K+ K    E S + E   K +  LE                +L R+  HP + +D +   
Sbjct: 106 KLQKLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRKDLNFHV 165

Query: 825 FLE 833
           FLE
Sbjct: 166 FLE 168


>ref|NP_001179950.1| serine/threonine-protein kinase Sgk3 [Bos taurus].
          Length = 490

 Score = 49.7 bits (117), Expect = 9e-06
 Identities = 34/123 (27%), Positives = 58/123 (47%)
 Frame = +3

Query: 471 TVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQFSVKRRFSDFLGLYEKLSEKHSQNG 650
           +V I   ++  +    +  YKV         RS+ F V RR+++F  LY  L ++     
Sbjct: 9   SVSIPSSDEHREKKKRFTVYKVLVSVG----RSEWF-VFRRYAEFDKLYNTLRKQFPAMA 63

Query: 651 FIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMVQDPDVREFL 830
             +P    K + G         D+   +F+++RRA L  ++Q +V HP +   PDVR FL
Sbjct: 64  LKIPA---KRIFG---------DNFDPDFIKQRRAGLNEFIQNLVRHPELYNHPDVRAFL 111

Query: 831 EKE 839
           + +
Sbjct: 112 QMD 114


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 65,320,674
Number of extensions: 1756706
Number of successful extensions: 7407
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 7354
Number of HSP's successfully gapped: 11
Length of query: 610
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 502
Effective length of database: 14,107,870
Effective search space: 7082150740
Effective search space used: 7082150740
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013943
         (1830 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_535509.2| PREDICTED: similar to Sorting nexin-1 isoform 1...   908   0.0  
Alignment   gi|XP_865548.1| PREDICTED: similar to sorting nexin 1 isoform c...   784   0.0  
Alignment   gi|XP_865581.1| PREDICTED: similar to sorting nexin 1 isoform b...   703   0.0  
Alignment   gi|XP_531886.2| PREDICTED: similar to sorting nexin 2 isoform 1...   537   e-152
Alignment   gi|XP_865564.1| PREDICTED: similar to Sorting nexin-1 isoform 3...   332   6e-91
Alignment   gi|XP_859551.1| PREDICTED: similar to Sorting nexin-2 isoform 3...   154   3e-37
Alignment   gi|XP_542877.2| PREDICTED: similar to Sorting nexin-5 [Canis fa...    97   4e-20
Alignment   gi|XP_547269.2| PREDICTED: similar to Sorting nexin-7 [Canis fa...    89   1e-17
Alignment   gi|XP_540847.2| PREDICTED: similar to Sorting nexin-6 (TRAF4-as...    89   2e-17
Alignment   gi|XP_538794.2| PREDICTED: similar to sorting nexin 7 (predicte...    84   5e-16

>ref|XP_535509.2| PREDICTED: similar to Sorting nexin-1 isoform 1 [Canis familiaris].
          Length = 521

 Score =  908 bits (2347), Expect = 0.0
 Identities = 472/522 (90%), Positives = 478/522 (91%)
 Frame = +3

Query: 36   MASGGGGCSAXXXXXXXXXXXXXXXXGATGGSEPEAGDSDTEGEDIFTGAAAASKPQSPK 215
            MASGGGGCSA                GA GGSEPEAGDSDTEGEDIFTGAAAASKPQSPK
Sbjct: 1    MASGGGGCSASERLPPPFPGLEPESEGAAGGSEPEAGDSDTEGEDIFTGAAAASKPQSPK 60

Query: 216  RIASLLPINNGSKENGIHEEQDQEPQDLFADATVELSLDSTQNNQKKLPAKTLISLPPQE 395
            RIASL PINNGSKENGIHEEQDQEPQDLFADATVELSLDS+QNNQKK+PAKTLISLPPQE
Sbjct: 61   RIASL-PINNGSKENGIHEEQDQEPQDLFADATVELSLDSSQNNQKKVPAKTLISLPPQE 119

Query: 396  ATNSSKLQPSYXXXXXXXXXXXXXXTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQ 575
            ATNSSK QPSY              TVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQ
Sbjct: 120  ATNSSKPQPSYEELEEEEQEDQFDLTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQ 179

Query: 576  FSVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRA 755
            F+VKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRA
Sbjct: 180  FAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRA 239

Query: 756  ALERYLQRIVNHPTMVQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTI 935
            ALERYLQRIVNHPTM+QDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTI
Sbjct: 240  ALERYLQRIVNHPTMLQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTI 299

Query: 936  KMNESDIWFXXXXXXXXXXXQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDN 1115
            KMNESDIWF           QRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDN
Sbjct: 300  KMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDN 359

Query: 1116 TALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRW 1295
            TALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRW
Sbjct: 360  TALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRW 419

Query: 1296 QDAQATLQKKREAEARLLWANKPDKLQQAKDEIIEWESRVTQYERDFERISTVVRKEVIR 1475
            QDAQATLQKKREAEARLLWANKPDKLQQAKDEI+EWESRVTQYERDFERISTVVRKEVIR
Sbjct: 420  QDAQATLQKKREAEARLLWANKPDKLQQAKDEILEWESRVTQYERDFERISTVVRKEVIR 479

Query: 1476 FEKEKSKDFENHVIKYLETLLYSQQQLAKYWEAFLPEAKAIS 1601
            FEKEKSKDF+NHVIKYLETLLYSQQQLAKYWEAFLPEAKAIS
Sbjct: 480  FEKEKSKDFKNHVIKYLETLLYSQQQLAKYWEAFLPEAKAIS 521


>ref|XP_865548.1| PREDICTED: similar to sorting nexin 1 isoform c isoform 2 [Canis
            familiaris].
          Length = 473

 Score =  784 bits (2024), Expect = 0.0
 Identities = 424/522 (81%), Positives = 430/522 (82%)
 Frame = +3

Query: 36   MASGGGGCSAXXXXXXXXXXXXXXXXGATGGSEPEAGDSDTEGEDIFTGAAAASKPQSPK 215
            MASGGGGCSA                GA GGSEPEAGDSDTEGEDIFTGAAAASKPQSPK
Sbjct: 1    MASGGGGCSASERLPPPFPGLEPESEGAAGGSEPEAGDSDTEGEDIFTGAAAASKPQSPK 60

Query: 216  RIASLLPINNGSKENGIHEEQDQEPQDLFADATVELSLDSTQNNQKKLPAKTLISLPPQE 395
            RIASL PINNGSKENGIHEEQDQEPQDLFADATVELSLDS+QNNQKK+PAKTLISLPPQE
Sbjct: 61   RIASL-PINNGSKENGIHEEQDQEPQDLFADATVELSLDSSQNNQKKVPAKTLISLPPQE 119

Query: 396  ATNSSKLQPSYXXXXXXXXXXXXXXTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQ 575
            ATNSSK QPSY              TVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQ
Sbjct: 120  ATNSSKPQPSYEELEEEEQEDQFDLTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQ 179

Query: 576  FSVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRA 755
            F+VKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRA
Sbjct: 180  FAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRA 239

Query: 756  ALERYLQRIVNHPTMVQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTI 935
            ALERYLQRIVNHPTM+QDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTI
Sbjct: 240  ALERYLQRIVNHPTMLQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTI 299

Query: 936  KMNESDIWFXXXXXXXXXXXQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDN 1115
            KMNESDIWF           QRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDN
Sbjct: 300  KMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDN 359

Query: 1116 TALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRW 1295
            TALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVR         W+  
Sbjct: 360  TALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVR---------WE-- 408

Query: 1296 QDAQATLQKKREAEARLLWANKPDKLQQAKDEIIEWESRVTQYERDFERISTVVRKEVIR 1475
                                                 SRVTQYERDFERISTVVRKEVIR
Sbjct: 409  -------------------------------------SRVTQYERDFERISTVVRKEVIR 431

Query: 1476 FEKEKSKDFENHVIKYLETLLYSQQQLAKYWEAFLPEAKAIS 1601
            FEKEKSKDF+NHVIKYLETLLYSQQQLAKYWEAFLPEAKAIS
Sbjct: 432  FEKEKSKDFKNHVIKYLETLLYSQQQLAKYWEAFLPEAKAIS 473


>ref|XP_865581.1| PREDICTED: similar to sorting nexin 1 isoform b isoform 4 [Canis
            familiaris].
          Length = 456

 Score =  703 bits (1814), Expect = 0.0
 Identities = 385/524 (73%), Positives = 398/524 (75%), Gaps = 2/524 (0%)
 Frame = +3

Query: 36   MASGGGGCSAXXXXXXXXXXXXXXXXGATGGSEPEAGDSDTEGEDIFTGAAAASKPQSPK 215
            MASGGGGCSA                GA GGSEPEAGDS                     
Sbjct: 1    MASGGGGCSASERLPPPFPGLEPESEGAAGGSEPEAGDS--------------------- 39

Query: 216  RIASLLPINNGSKENGIHEEQDQEPQDLFADATVELSLDSTQNNQKKLPAKTLISLPPQE 395
                                 D E +D+F  A             K    K + SLP   
Sbjct: 40   ---------------------DTEGEDIFTGAAAA---------SKPQSPKRIASLPINN 69

Query: 396  ATNSSKLQPSYXXXXXXXXXXXXXXTVGITDPEKI--GDGMNAYVAYKVTTQTSLPMFRS 569
             +  + +                       +P+ +  GDGMNAYVAYKVTTQTSLPMFRS
Sbjct: 70   GSKENGIHEEQDQ-----------------EPQDLFAGDGMNAYVAYKVTTQTSLPMFRS 112

Query: 570  KQFSVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKR 749
            KQF+VKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKR
Sbjct: 113  KQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKR 172

Query: 750  RAALERYLQRIVNHPTMVQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKM 929
            RAALERYLQRIVNHPTM+QDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKM
Sbjct: 173  RAALERYLQRIVNHPTMLQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKM 232

Query: 930  TIKMNESDIWFXXXXXXXXXXXQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSE 1109
            TIKMNESDIWF           QRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSE
Sbjct: 233  TIKMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSE 292

Query: 1110 DNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQ 1289
            DNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQ
Sbjct: 293  DNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQ 352

Query: 1290 RWQDAQATLQKKREAEARLLWANKPDKLQQAKDEIIEWESRVTQYERDFERISTVVRKEV 1469
            RWQDAQATLQKKREAEARLLWANKPDKLQQAKDEI+EWESRVTQYERDFERISTVVRKEV
Sbjct: 353  RWQDAQATLQKKREAEARLLWANKPDKLQQAKDEILEWESRVTQYERDFERISTVVRKEV 412

Query: 1470 IRFEKEKSKDFENHVIKYLETLLYSQQQLAKYWEAFLPEAKAIS 1601
            IRFEKEKSKDF+NHVIKYLETLLYSQQQLAKYWEAFLPEAKAIS
Sbjct: 413  IRFEKEKSKDFKNHVIKYLETLLYSQQQLAKYWEAFLPEAKAIS 456


>ref|XP_531886.2| PREDICTED: similar to sorting nexin 2 isoform 1 [Canis familiaris].
          Length = 398

 Score =  537 bits (1384), Expect = e-152
 Identities = 266/376 (70%), Positives = 316/376 (84%)
 Frame = +3

Query: 474  VGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQFSVKRRFSDFLGLYEKLSEKHSQNGF 653
            +G++DPEK+GDGMNAY+AY+VTT+TSL MF   +FSVKRRFSDFLGL+ KL+ K+   G+
Sbjct: 23   IGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHVGY 82

Query: 654  IVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMVQDPDVREFLE 833
            IVPP PEKS++GMTKVKVGKEDSSS EF+EKRRAALERYLQR V HPT++QDPD+R+FLE
Sbjct: 83   IVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQFLE 142

Query: 834  KEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFXXXXXXXXXXXQRLRKL 1013
              ELPRAV TQ LSGAG+L+M NKA DAV+KMTIKMNESD WF           Q+LRKL
Sbjct: 143  SSELPRAVNTQALSGAGILRMVNKAADAVNKMTIKMNESDAWFEEKQQQFENLDQQLRKL 202

Query: 1014 HAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQEQAN 1193
            HA VE LV HRKEL+ NTA FAKS AMLG+SED+TALSRALSQLAEVEEKI+QLHQEQA 
Sbjct: 203  HASVEALVCHRKELSANTAAFAKSAAMLGNSEDHTALSRALSQLAEVEEKIDQLHQEQAF 262

Query: 1194 NDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWANKPDKL 1373
             DF++ +ELLSDYIRL+A V+  FD RMK WQ+W+DAQ TL KKRE EA+++ ANKPDK+
Sbjct: 263  ADFYMFSELLSDYIRLIAAVKGVFDHRMKCWQKWEDAQITLLKKRETEAKMMVANKPDKI 322

Query: 1374 QQAKDEIIEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFENHVIKYLETLLYSQQQ 1553
            QQAK+EI EWE++V Q ERDFE+IS  +RKEV RFEKE+ KDF+  +IKYLE+L+ +QQQ
Sbjct: 323  QQAKNEIREWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVIIKYLESLVQTQQQ 382

Query: 1554 LAKYWEAFLPEAKAIS 1601
            L KYWEAFLPEAKAI+
Sbjct: 383  LIKYWEAFLPEAKAIA 398


>ref|XP_865564.1| PREDICTED: similar to Sorting nexin-1 isoform 3 [Canis familiaris].
          Length = 170

 Score =  332 bits (852), Expect = 6e-91
 Identities = 168/170 (98%), Positives = 170/170 (100%)
 Frame = +3

Query: 1092 MLGSSEDNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQ 1271
            MLGSSEDNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQ
Sbjct: 1    MLGSSEDNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQ 60

Query: 1272 RMKTWQRWQDAQATLQKKREAEARLLWANKPDKLQQAKDEIIEWESRVTQYERDFERIST 1451
            RMKTWQRWQDAQATLQKKREAEARLLWANKPDKLQQAKDEI+EWESRVTQYERDFERIST
Sbjct: 61   RMKTWQRWQDAQATLQKKREAEARLLWANKPDKLQQAKDEILEWESRVTQYERDFERIST 120

Query: 1452 VVRKEVIRFEKEKSKDFENHVIKYLETLLYSQQQLAKYWEAFLPEAKAIS 1601
            VVRKEVIRFEKEKSKDF+NHVIKYLETLLYSQQQLAKYWEAFLPEAKAIS
Sbjct: 121  VVRKEVIRFEKEKSKDFKNHVIKYLETLLYSQQQLAKYWEAFLPEAKAIS 170


>ref|XP_859551.1| PREDICTED: similar to Sorting nexin-2 isoform 3 [Canis familiaris].
          Length = 124

 Score =  154 bits (389), Expect = 3e-37
 Identities = 72/98 (73%), Positives = 87/98 (88%)
 Frame = +3

Query: 474 VGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQFSVKRRFSDFLGLYEKLSEKHSQNGF 653
           +G++DPEK+GDGMNAY+AY+VTT+TSL MF   +FSVKRRFSDFLGL+ KL+ K+   G+
Sbjct: 27  IGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHVGY 86

Query: 654 IVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALER 767
           IVPP PEKS++GMTKVKVGKEDSSS EF+EKRRAALER
Sbjct: 87  IVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALER 124


>ref|XP_542877.2| PREDICTED: similar to Sorting nexin-5 [Canis familiaris].
          Length = 404

 Score = 97.4 bits (241), Expect = 4e-20
 Identities = 93/360 (25%), Positives = 166/360 (46%), Gaps = 24/360 (6%)
 Frame = +3

Query: 522  VAYKVTTQTSLPMFRSKQFSVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLI----- 686
            V + V T+T+LP F+S +FSV R+  DF+ L++ L E     G I+PP P K        
Sbjct: 45   VKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLIETADYAGLIIPPAPTKPDFDGPRE 104

Query: 687  ----------GMTKVKVGK-EDSSSAEFL---EKRRAALERYLQRIVNHPTMVQDPDVRE 824
                       MTK +  K +    AE+L   +K  ++ E +LQR+ +HP + +D +   
Sbjct: 105  KMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHV 164

Query: 825  FLEKEE--LPRAVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFXXXXXXXXXXXQ 998
            FLE ++    R   T+ + G G  K   K+ D V    +K  E D +F            
Sbjct: 165  FLEYDQDLSVRRKNTKEMFG-GFFKSVVKSADEVLFSGVK--EVDDFFEQEKNFLINYYN 221

Query: 999  RLRKLHAVVETLVNHRKELA---LNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIE 1169
            R++   A  + +    K +A   ++TA    SLA+    E+ T + + L ++AE+ EK+ 
Sbjct: 222  RIKDSCAKADKMTRSHKNVADDYIHTAACLHSLAL----EEPTVIKKYLLKVAELFEKLR 277

Query: 1170 QLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLL 1349
            ++    ++++   L ELL  Y+  +   +    +R K    ++++   L K R       
Sbjct: 278  KVESRVSSDEDLKLTELLRYYMLNIEAAKDLLYRRTKALTDYENSNKALDKAR------- 330

Query: 1350 WANKPDKLQQAKDEIIEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFENHVIKYLE 1529
              +K  KL          ES   +  + FE++S   ++E+I F++++   F  ++I+  E
Sbjct: 331  LKSKDVKLA---------ESHQQECCQKFEQLSESAKEELINFKRKRVAAFRKNLIEMSE 381


>ref|XP_547269.2| PREDICTED: similar to Sorting nexin-7 [Canis familiaris].
          Length = 458

 Score = 89.0 bits (219), Expect = 1e-17
 Identities = 82/369 (22%), Positives = 157/369 (42%)
 Frame = +3

Query: 474  VGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQFSVKRRFSDFLGLYEKLSEKHSQNGF 653
            + + +PE     +  ++ Y++ T+TS   F S +F V+RR+ DFL L  KL E H     
Sbjct: 102  ITVDEPESHVTTIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKLEEAHPT--L 159

Query: 654  IVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMVQDPDVREFLE 833
            I+PP PEK ++       G  +  + +F+E RR AL ++L RI +HPT+  + D + FL 
Sbjct: 160  IIPPLPEKFIV------KGMVERFNDDFIETRRKALHKFLNRIADHPTLTFNEDFKVFLT 213

Query: 834  KEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFXXXXXXXXXXXQRLRKL 1013
             +     + +    G GLL    +   AV+     +      F           Q++  +
Sbjct: 214  AQAW--ELSSHKKQGPGLLSRMGQTVRAVAMSMRGVKSRPEEFMEMNNFIEIFSQKINLI 271

Query: 1014 HAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQEQAN 1193
              + + +    +E +    ++     +  +SE++  L   L  +A   ++  +  +++ +
Sbjct: 272  DKISQRIYKEEREYSDEMKEYGPIHVLWSASEED--LVDTLKGVASCIDQCCKATEKRMS 329

Query: 1194 NDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWANKPDKL 1373
                 L  ++ +Y+    ++       M   +R    QA L  K EA    L   K D  
Sbjct: 330  GLSEALLPVVHEYVLYSEML-------MGVMKRRDQIQAELDSKVEA----LTYKKAD-T 377

Query: 1374 QQAKDEIIEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFENHVIKYLETLLYSQQQ 1553
                +EI + E +V       E  +  ++ +  R++     D ++      E  ++  +Q
Sbjct: 378  DLLTEEIGKLEDKV-------ECANNALKADWERWKHNMQNDIKSAFTDMAEENIHYYEQ 430

Query: 1554 LAKYWEAFL 1580
                WE+FL
Sbjct: 431  CLATWESFL 439


>ref|XP_540847.2| PREDICTED: similar to Sorting nexin-6 (TRAF4-associated factor 2)
            [Canis familiaris].
          Length = 402

 Score = 88.6 bits (218), Expect = 2e-17
 Identities = 89/375 (23%), Positives = 162/375 (43%), Gaps = 22/375 (5%)
 Frame = +3

Query: 522  VAYKVTTQTSLPMFRSKQFSVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTK- 698
            V + V T++ LP F   +FSV R+  +F+ L++   E     G I+PP P +     ++ 
Sbjct: 39   VKFTVQTKSCLPHFTQLEFSVVRQHEEFIWLHDAYVENEEYAGLIIPPAPPRPDFEASRE 98

Query: 699  --VKVGKEDSS-------------SAEFL---EKRRAALERYLQRIVNHPTMVQDPDVRE 824
               K+G+ DSS              AE+L   +K  A  E +LQR+  HPT+ +D +   
Sbjct: 99   KLQKLGEGDSSITREEFAKMKQELEAEYLAIFKKTVAMHEVFLQRLAAHPTLRRDHNFFV 158

Query: 825  FLE--KEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFXXXXXXXXXXXQ 998
            FLE  ++   R    + L G  L  +   A +A+      + E D +F            
Sbjct: 159  FLEYGQDLSVRGKNRKELLGGYLRNIVKSADEALITRMSGLKEVDDFFEHERTFLLEYHT 218

Query: 999  RLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLH 1178
            R+R      + ++   K LA +    + +L  LG  E N  L  +  +LAE  E++ +L 
Sbjct: 219  RIRDACLRADRVMYSHKCLADDYIPISAALNSLGVQEVN-QLKMSFLKLAEFFERLRKLE 277

Query: 1179 QEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWAN 1358
               A+++   L+++L  Y+R     +    +R++    +++A   L              
Sbjct: 278  GRVASDEDLKLSDMLRYYMRDSQAAKDLLYRRLRALADYENANKAL-------------- 323

Query: 1359 KPDKLQQAKDEIIEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFENHVIKYLE-TL 1535
              DK +    E+   ES   +  + FER+S   ++E++ F+  +   F  ++I+  E  L
Sbjct: 324  --DKARTRNREVRTAESHQQRCCQRFERLSDSAKQELMDFKSRRVISFRKNLIELAELEL 381

Query: 1536 LYSQQQLAKYWEAFL 1580
             +++      W   L
Sbjct: 382  KHAKASTLLLWNTLL 396


>ref|XP_538794.2| PREDICTED: similar to sorting nexin 7 (predicted) [Canis familiaris].
          Length = 497

 Score = 84.0 bits (206), Expect = 5e-16
 Identities = 85/406 (20%), Positives = 170/406 (41%), Gaps = 2/406 (0%)
 Frame = +3

Query: 474  VGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQFSVKRRFSDFLGLYEKLSEKHSQNGF 653
            V + DP+K    M  Y+ Y++TT+++   F   ++SV+RR+ DF  L  KL E  SQ   
Sbjct: 76   VTVDDPKKHVCTMETYITYRITTKSTRVEFDLPEYSVRRRYQDFDWLRNKLEE--SQPTH 133

Query: 654  IVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMVQDPDVREFLE 833
            ++PP PEK ++       G  D  S EF+E RR AL+++L+RI +HP +  +     FL 
Sbjct: 134  LIPPLPEKFVV------KGVVDRFSEEFVETRRKALDKFLKRITDHPVLSFNEHFNVFLT 187

Query: 834  KEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFXXXXXXXXXXXQRLRKL 1013
             ++L          G  LL    ++   V+    K+    + F            +L  +
Sbjct: 188  AKDL----NAYKKQGMALLTRVGESVKHVTG-GYKLRSRPLEFAAIGDYLDTFALKLGTI 242

Query: 1014 HAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTA--LSRALSQLAEVEEKIEQLHQEQ 1187
              + + ++    E  +   ++    +   + E   +  L    + +      +E+L  + 
Sbjct: 243  DRIAQRIIKEEIEYLVELREYGPVYSTWSALEGELSEPLEGVSACIGNCSTALEEL-TDD 301

Query: 1188 ANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWANKPD 1367
               DF     +L +YI         +   MK+  + +D    +Q + EA+   +   K D
Sbjct: 302  MTEDFL---PVLREYI--------LYSDSMKSVLKKRD---QVQAEYEAKLEAVALRKED 347

Query: 1368 KLQQAKDEIIEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFENHVIKYLETLLYSQ 1547
            + +   D        V + +   E  +  ++ ++ R++  K +DF   ++   +  +   
Sbjct: 348  RPKVPAD--------VEKCQDRMECFNADLKADMERWQSNKRQDFRQLLMGMADKNIQYY 399

Query: 1548 QQLAKYWEAFLPEAKAIS*RTEDTRAHLPDAAFLYTVLLHLRWTPV 1685
            ++    WE+ +P    +  + E  R  +      Y    + R++P+
Sbjct: 400  EKCLMAWESIIP---LLQEKQEANRDFVNSTRMFYMKCFNPRYSPI 442


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 68,332,628
Number of extensions: 1818658
Number of successful extensions: 8238
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 8194
Number of HSP's successfully gapped: 18
Length of query: 610
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 501
Effective length of database: 15,240,880
Effective search space: 7635680880
Effective search space used: 7635680880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013943
         (1830 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_001928534.3| PREDICTED: sorting nexin-1 isoform 1 [Sus sc...   925   0.0  
Alignment   gi|XP_003353368.1| PREDICTED: sorting nexin-1 isoform 3 [Sus sc...   800   0.0  
Alignment   gi|XP_003353367.1| PREDICTED: sorting nexin-1 isoform 2 [Sus sc...   703   0.0  
Alignment   gi|XP_003362220.1| PREDICTED: sorting nexin-1-like, partial [Su...   629   e-180
Alignment   gi|XP_003360918.1| PREDICTED: sorting nexin-2 [Sus scrofa].          564   e-161
Alignment   gi|XP_003361225.1| PREDICTED: sorting nexin-7-like [Sus scrofa].      94   3e-19
Alignment   gi|XP_003122575.1| PREDICTED: sorting nexin-32 [Sus scrofa].          89   1e-17
Alignment   gi|XP_003125946.2| PREDICTED: sorting nexin-7-like [Sus scrofa].      84   3e-16
Alignment   gi|XP_001928105.1| PREDICTED: sorting nexin-12 [Sus scrofa].          74   4e-13
Alignment   gi|XP_003134314.2| PREDICTED: sorting nexin-5 isoform 2 [Sus sc...    64   2e-10

>ref|XP_001928534.3| PREDICTED: sorting nexin-1 isoform 1 [Sus scrofa].
          Length = 522

 Score =  925 bits (2390), Expect = 0.0
 Identities = 480/522 (91%), Positives = 481/522 (92%)
 Frame = +3

Query: 36   MASGGGGCSAXXXXXXXXXXXXXXXXGATGGSEPEAGDSDTEGEDIFTGAAAASKPQSPK 215
            MASGGGGCSA                GATGGSEPEAGDSDTEGEDIFTGAAAASKPQSPK
Sbjct: 1    MASGGGGCSASERLPPPFPSLEPEFEGATGGSEPEAGDSDTEGEDIFTGAAAASKPQSPK 60

Query: 216  RIASLLPINNGSKENGIHEEQDQEPQDLFADATVELSLDSTQNNQKKLPAKTLISLPPQE 395
            RIASLLPINNGSKENGIHEEQDQEPQDLFADATVELSLDSTQNNQKKLPAKTLISLPPQE
Sbjct: 61   RIASLLPINNGSKENGIHEEQDQEPQDLFADATVELSLDSTQNNQKKLPAKTLISLPPQE 120

Query: 396  ATNSSKLQPSYXXXXXXXXXXXXXXTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQ 575
            ATNSSKLQPSY              TVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQ
Sbjct: 121  ATNSSKLQPSYEELEEEEQEDQFDLTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQ 180

Query: 576  FSVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRA 755
            FSVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRA
Sbjct: 181  FSVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRA 240

Query: 756  ALERYLQRIVNHPTMVQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTI 935
            ALERYLQRIVNHPTMVQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTI
Sbjct: 241  ALERYLQRIVNHPTMVQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTI 300

Query: 936  KMNESDIWFXXXXXXXXXXXQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDN 1115
            KMNESDIWF           QRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDN
Sbjct: 301  KMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDN 360

Query: 1116 TALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRW 1295
            TALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRW
Sbjct: 361  TALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRW 420

Query: 1296 QDAQATLQKKREAEARLLWANKPDKLQQAKDEIIEWESRVTQYERDFERISTVVRKEVIR 1475
            QDAQATLQKKREAEARLLWANKPDKLQQAKDEIIEWESRVTQYERDFERISTVVRKEVIR
Sbjct: 421  QDAQATLQKKREAEARLLWANKPDKLQQAKDEIIEWESRVTQYERDFERISTVVRKEVIR 480

Query: 1476 FEKEKSKDFENHVIKYLETLLYSQQQLAKYWEAFLPEAKAIS 1601
            FEKEKSKDF+NHVIKYLETLLYSQQQLAKYWEAFLPEAKAIS
Sbjct: 481  FEKEKSKDFKNHVIKYLETLLYSQQQLAKYWEAFLPEAKAIS 522


>ref|XP_003353368.1| PREDICTED: sorting nexin-1 isoform 3 [Sus scrofa].
          Length = 474

 Score =  800 bits (2065), Expect = 0.0
 Identities = 431/522 (82%), Positives = 433/522 (82%)
 Frame = +3

Query: 36   MASGGGGCSAXXXXXXXXXXXXXXXXGATGGSEPEAGDSDTEGEDIFTGAAAASKPQSPK 215
            MASGGGGCSA                GATGGSEPEAGDSDTEGEDIFTGAAAASKPQSPK
Sbjct: 1    MASGGGGCSASERLPPPFPSLEPEFEGATGGSEPEAGDSDTEGEDIFTGAAAASKPQSPK 60

Query: 216  RIASLLPINNGSKENGIHEEQDQEPQDLFADATVELSLDSTQNNQKKLPAKTLISLPPQE 395
            RIASLLPINNGSKENGIHEEQDQEPQDLFADATVELSLDSTQNNQKKLPAKTLISLPPQE
Sbjct: 61   RIASLLPINNGSKENGIHEEQDQEPQDLFADATVELSLDSTQNNQKKLPAKTLISLPPQE 120

Query: 396  ATNSSKLQPSYXXXXXXXXXXXXXXTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQ 575
            ATNSSKLQPSY              TVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQ
Sbjct: 121  ATNSSKLQPSYEELEEEEQEDQFDLTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQ 180

Query: 576  FSVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRA 755
            FSVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRA
Sbjct: 181  FSVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRA 240

Query: 756  ALERYLQRIVNHPTMVQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTI 935
            ALERYLQRIVNHPTMVQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTI
Sbjct: 241  ALERYLQRIVNHPTMVQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTI 300

Query: 936  KMNESDIWFXXXXXXXXXXXQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDN 1115
            KMNESDIWF           QRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDN
Sbjct: 301  KMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDN 360

Query: 1116 TALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRW 1295
            TALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVR         W+  
Sbjct: 361  TALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVR---------WE-- 409

Query: 1296 QDAQATLQKKREAEARLLWANKPDKLQQAKDEIIEWESRVTQYERDFERISTVVRKEVIR 1475
                                                 SRVTQYERDFERISTVVRKEVIR
Sbjct: 410  -------------------------------------SRVTQYERDFERISTVVRKEVIR 432

Query: 1476 FEKEKSKDFENHVIKYLETLLYSQQQLAKYWEAFLPEAKAIS 1601
            FEKEKSKDF+NHVIKYLETLLYSQQQLAKYWEAFLPEAKAIS
Sbjct: 433  FEKEKSKDFKNHVIKYLETLLYSQQQLAKYWEAFLPEAKAIS 474


>ref|XP_003353367.1| PREDICTED: sorting nexin-1 isoform 2 [Sus scrofa].
          Length = 457

 Score =  703 bits (1815), Expect = 0.0
 Identities = 390/524 (74%), Positives = 399/524 (76%), Gaps = 2/524 (0%)
 Frame = +3

Query: 36   MASGGGGCSAXXXXXXXXXXXXXXXXGATGGSEPEAGDSDTEGEDIFTGAAAASKPQSPK 215
            MASGGGGCSA                GATGGSEPEAG                       
Sbjct: 1    MASGGGGCSASERLPPPFPSLEPEFEGATGGSEPEAG----------------------- 37

Query: 216  RIASLLPINNGSKENGIHEEQDQEPQDLFADATVELSLDSTQNNQKKLPAKTLISLPPQE 395
                               + D E +D+F  A             K    K + SL P  
Sbjct: 38   -------------------DSDTEGEDIFTGAAAA---------SKPQSPKRIASLLP-- 67

Query: 396  ATNSSKLQPSYXXXXXXXXXXXXXXTVGITDPEKI--GDGMNAYVAYKVTTQTSLPMFRS 569
              N SK    +                   +P+ +  GDGMNAYVAYKVTTQTSLPMFRS
Sbjct: 68   INNGSKENGIHEEQDQ--------------EPQDLFAGDGMNAYVAYKVTTQTSLPMFRS 113

Query: 570  KQFSVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKR 749
            KQFSVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKR
Sbjct: 114  KQFSVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKR 173

Query: 750  RAALERYLQRIVNHPTMVQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKM 929
            RAALERYLQRIVNHPTMVQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKM
Sbjct: 174  RAALERYLQRIVNHPTMVQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKM 233

Query: 930  TIKMNESDIWFXXXXXXXXXXXQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSE 1109
            TIKMNESDIWF           QRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSE
Sbjct: 234  TIKMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSE 293

Query: 1110 DNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQ 1289
            DNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQ
Sbjct: 294  DNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQ 353

Query: 1290 RWQDAQATLQKKREAEARLLWANKPDKLQQAKDEIIEWESRVTQYERDFERISTVVRKEV 1469
            RWQDAQATLQKKREAEARLLWANKPDKLQQAKDEIIEWESRVTQYERDFERISTVVRKEV
Sbjct: 354  RWQDAQATLQKKREAEARLLWANKPDKLQQAKDEIIEWESRVTQYERDFERISTVVRKEV 413

Query: 1470 IRFEKEKSKDFENHVIKYLETLLYSQQQLAKYWEAFLPEAKAIS 1601
            IRFEKEKSKDF+NHVIKYLETLLYSQQQLAKYWEAFLPEAKAIS
Sbjct: 414  IRFEKEKSKDFKNHVIKYLETLLYSQQQLAKYWEAFLPEAKAIS 457


>ref|XP_003362220.1| PREDICTED: sorting nexin-1-like, partial [Sus scrofa].
          Length = 379

 Score =  629 bits (1622), Expect = e-180
 Identities = 329/354 (92%), Positives = 329/354 (92%)
 Frame = +3

Query: 195  SKPQSPKRIASLLPINNGSKENGIHEEQDQEPQDLFADATVELSLDSTQNNQKKLPAKTL 374
            SKPQSPKRIASLLPINNGSKENGIHEEQDQEPQDLFADATVELSLDSTQNNQKKLPAKTL
Sbjct: 1    SKPQSPKRIASLLPINNGSKENGIHEEQDQEPQDLFADATVELSLDSTQNNQKKLPAKTL 60

Query: 375  ISLPPQEATNSSKLQPSYXXXXXXXXXXXXXXTVGITDPEKIGDGMNAYVAYKVTTQTSL 554
            ISLPPQEATNSSKLQPSY              TVGITDPEKIGDGMNAYVAYKVTTQTSL
Sbjct: 61   ISLPPQEATNSSKLQPSYEELEEEEQEDQFDLTVGITDPEKIGDGMNAYVAYKVTTQTSL 120

Query: 555  PMFRSKQFSVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAE 734
            PMFRSKQFSVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAE
Sbjct: 121  PMFRSKQFSVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAE 180

Query: 735  FLEKRRAALERYLQRIVNHPTMVQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATD 914
            FLEKRRAALERYLQRIVNHPTMVQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATD
Sbjct: 181  FLEKRRAALERYLQRIVNHPTMVQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATD 240

Query: 915  AVSKMTIKMNESDIWFXXXXXXXXXXXQRLRKLHAVVETLVNHRKELALNTAQFAKSLAM 1094
            AVSKMTIKMNESDIWF           QRLRKLHAVVETLVNHRKELALNTAQFAKSLAM
Sbjct: 241  AVSKMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTAQFAKSLAM 300

Query: 1095 LGSSEDNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVR 1256
            LGSSEDNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVR
Sbjct: 301  LGSSEDNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVR 354


>ref|XP_003360918.1| PREDICTED: sorting nexin-2 [Sus scrofa].
          Length = 559

 Score =  564 bits (1453), Expect = e-161
 Identities = 303/511 (59%), Positives = 373/511 (72%), Gaps = 18/511 (3%)
 Frame = +3

Query: 123  GGSEPEAGDSDTEGEDIFTGAAAA--SKPQSPK-RIASLLPINNGSKENGIHEEQ---DQ 284
            G  +P   +   +GED+FT   +   S P SP+   ASLL  + G+  NG    +   D 
Sbjct: 49   GDGKPTDFEELEDGEDLFTSTVSTLESSPSSPEPAAASLLAEDIGTNSNGPKPAEVVLDD 108

Query: 285  EPQDLFADATVELSLDSTQN----NQKKLPAKTLIS-----LPPQEATNSSK---LQPSY 428
            + +DLFA+AT E+SLDS +     + +  PA T ++      P  E+ + S       S 
Sbjct: 109  DREDLFAEATEEVSLDSPEREPILSSEPSPAVTPVTPTTLIAPRIESKSMSAPVIFDRSR 168

Query: 429  XXXXXXXXXXXXXXTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQFSVKRRFSDFL 608
                           +G++DPEK+GDGMNAY+AY+VTT+TSL MF   +FSVKRRFSDFL
Sbjct: 169  EEIEEEANGDVFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFL 228

Query: 609  GLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVN 788
            GL+ KL+ K+   G+IVPP PEKS++GMTKVKVGKEDSSS EF+EKRRAALERYLQR V 
Sbjct: 229  GLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVK 288

Query: 789  HPTMVQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFXX 968
            HPT++QDPD+R+FLE  ELPRAV TQ LSGAG+L+M NKA DAV+KMTIKMNESD WF  
Sbjct: 289  HPTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKAADAVNKMTIKMNESDAWFEE 348

Query: 969  XXXXXXXXXQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLA 1148
                     Q+LRKLHA VE LV HRKEL+ NTA FAKS AMLG+SED+TALSRALSQLA
Sbjct: 349  KQQQFENLDQQLRKLHASVEALVCHRKELSANTAAFAKSAAMLGNSEDHTALSRALSQLA 408

Query: 1149 EVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKR 1328
            EVEEKI+QLHQEQA  DF++ +ELLSDYIRL+A V+  FD RMK WQ+W+DAQ TL KKR
Sbjct: 409  EVEEKIDQLHQEQAFADFYMFSELLSDYIRLIAAVKGVFDHRMKCWQKWEDAQMTLLKKR 468

Query: 1329 EAEARLLWANKPDKLQQAKDEIIEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFEN 1508
            E EA+++ ANKPDK+QQAK+EI EWE++V Q ERDFE+IS  +RKEV RFEKE+ KDF+ 
Sbjct: 469  ETEAKMMVANKPDKIQQAKNEIREWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKT 528

Query: 1509 HVIKYLETLLYSQQQLAKYWEAFLPEAKAIS 1601
             +IKYLE+L+ +QQQL KYWEAFLPEAKAI+
Sbjct: 529  VIIKYLESLVQTQQQLIKYWEAFLPEAKAIA 559


>ref|XP_003361225.1| PREDICTED: sorting nexin-7-like [Sus scrofa].
          Length = 446

 Score = 94.0 bits (232), Expect = 3e-19
 Identities = 85/390 (21%), Positives = 164/390 (42%)
 Frame = +3

Query: 474  VGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQFSVKRRFSDFLGLYEKLSEKHSQNGF 653
            + + +PE     +  ++ Y++ T+TS   F S +F V+RR+ DFL L EKL E H     
Sbjct: 91   ITVDEPESHVTTIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKEKLEEAHPT--L 148

Query: 654  IVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMVQDPDVREFLE 833
            I+PP PEK ++       G  +  + +F+E RR AL ++L RI +HPT+  + D + FL 
Sbjct: 149  IIPPLPEKFIV------KGMVERFNDDFIETRRKALHKFLNRIADHPTLTFNEDFKVFLT 202

Query: 834  KEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFXXXXXXXXXXXQRLRKL 1013
             +     + +    G GLL    +   +V+     +      F            ++  +
Sbjct: 203  AQAW--ELSSHKKQGPGLLSRMGQTVRSVALSMRGVKSRPEEFMEMNNFIEIFSHKINLI 260

Query: 1014 HAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQEQAN 1193
              + + +    ++      ++     +  +SE++  L   L  +A   +K  +  +++ +
Sbjct: 261  DKISQRIYKEERDYFDEMKEYGPIHILWSASEED--LVDPLKGVASCLDKCCKATEKRMS 318

Query: 1194 NDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWANKPDKL 1373
                 L  ++ +Y+    ++       M   +R    QA L  K EA    L + K D  
Sbjct: 319  GLSEALLPVVHEYVLYSEML-------MGVMKRRDQIQAELDSKVEA----LTSKKAD-- 365

Query: 1374 QQAKDEIIEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFENHVIKYLETLLYSQQQ 1553
                 ++I+    + + E   E  +  ++ +  R+ +    D ++  I   E  +   +Q
Sbjct: 366  ----TDLIQLTEEIGKLEDKVECANNALKADWERWRQNMQNDIKSAFIDMAEENICYYEQ 421

Query: 1554 LAKYWEAFLPEAKAIS*RTEDTRAHLPDAA 1643
                WE+FL         T  T  HL +A+
Sbjct: 422  CLATWESFL---------TSQTDLHLEEAS 442


>ref|XP_003122575.1| PREDICTED: sorting nexin-32 [Sus scrofa].
          Length = 403

 Score = 88.6 bits (218), Expect = 1e-17
 Identities = 85/357 (23%), Positives = 156/357 (43%), Gaps = 21/357 (5%)
 Frame = +3

Query: 522  VAYKVTTQTSLPMFRSKQFSVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTK- 698
            V + V T++ LP F   +FSV R   +F+ L++   E     G I+PP P +     ++ 
Sbjct: 40   VKFTVQTKSCLPHFAQTEFSVVRLHEEFIWLHDAYVENEDYAGLIIPPAPPRPDFEASRE 99

Query: 699  --VKVGKEDSS-------------SAEFL---EKRRAALERYLQRIVNHPTMVQDPDVRE 824
               K+G+ DSS              AE+L   +K  A  E +LQR+  HPT+ +D +   
Sbjct: 100  KLQKLGEGDSSVTREEFAKMKQELEAEYLAIFKKTVAMHEVFLQRLAAHPTLRRDHNFFV 159

Query: 825  FLE--KEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFXXXXXXXXXXXQ 998
            FLE  ++   R    + L G  L  +   A +A+      + E D +F            
Sbjct: 160  FLEYGQDLSVRGKNRKELLGGFLRNIVKSADEALITGMSGLKEVDEFFEHERTFLLEYHP 219

Query: 999  RLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLH 1178
            R+R      + +++  K LA +    + +L+ LG+ E N  L  +  +LAE+ E++ +L 
Sbjct: 220  RIRDACLRADRVMHSHKCLADDYIPISAALSSLGTQEVN-QLKMSFLKLAELFERLRKLE 278

Query: 1179 QEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWAN 1358
               A++    L+++L  Y R     +    +R++    +++A   L              
Sbjct: 279  GRVASDQDLKLSDMLRYYTRDSQAAKDLLYRRLRALADYENASKAL-------------- 324

Query: 1359 KPDKLQQAKDEIIEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFENHVIKYLE 1529
              DK +    E+   ES      + FER+S   ++E++ F+  +   F  ++++  E
Sbjct: 325  --DKARTRNREVRAAESHQQLCCQRFERLSDSAKQELMDFKSRRVSSFRKNLVELAE 379


>ref|XP_003125946.2| PREDICTED: sorting nexin-7-like [Sus scrofa].
          Length = 583

 Score = 84.0 bits (206), Expect = 3e-16
 Identities = 48/150 (32%), Positives = 79/150 (52%)
 Frame = +3

Query: 474 VGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQFSVKRRFSDFLGLYEKLSEKHSQNGF 653
           + + +PE     +  ++ Y++ T+TS   F S +F V+RR+ DFL L EKL E H     
Sbjct: 224 ITVDEPESHVTTIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKEKLEEAHPT--L 281

Query: 654 IVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMVQDPDVREFLE 833
           I+PP PEK ++       G  +  + +F+E RR AL ++L RI +HPT+  + D + FL 
Sbjct: 282 IIPPLPEKFIV------KGMVERFNDDFIETRRKALHKFLNRIADHPTLTFNEDFKVFLT 335

Query: 834 KEELPRAVGTQTLSGAGLLKMFNKATDAVS 923
            +     + +    G GLL    +   +V+
Sbjct: 336 AQAW--ELSSHKKQGPGLLSRMGQTVRSVA 363


>ref|XP_001928105.1| PREDICTED: sorting nexin-12 [Sus scrofa].
          Length = 162

 Score = 73.6 bits (179), Expect = 4e-13
 Identities = 42/126 (33%), Positives = 72/126 (57%)
 Frame = +3

Query: 474 VGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQFSVKRRFSDFLGLYEKLSEKHSQNGF 653
           + I +P+ +G G   +  Y+V  +T+LP+F+ K+  V+RR+SDF  L  +L E+ S+   
Sbjct: 32  IDIFNPQTVGVGRARFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNEL-ERDSK--I 88

Query: 654 IVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMVQDPDVREFLE 833
           +VPP P K+L      + G E      F+E+RR  LE+++ +I  HP    +  +  FL+
Sbjct: 89  VVPPLPGKALKRQLPFR-GDEGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQ 147

Query: 834 KEELPR 851
           +E + R
Sbjct: 148 EEAIDR 153


>ref|XP_003134314.2| PREDICTED: sorting nexin-5 isoform 2 [Sus scrofa].
          Length = 299

 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 69/289 (23%), Positives = 134/289 (46%), Gaps = 9/289 (3%)
 Frame = +3

Query: 690  MTKVKVGK-EDSSSAEFL---EKRRAALERYLQRIVNHPTMVQDPDVREFLEKEE--LPR 851
            MTK +  K +    AE+L   +K  ++ E +LQR+ +HP + +D +   FLE ++    R
Sbjct: 11   MTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHVFLEYDQDLSVR 70

Query: 852  AVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFXXXXXXXXXXXQRLRKLHAVVET 1031
               T+ + G G  K   K+ D V    +K  E D +F            R++   A  + 
Sbjct: 71   RKNTKEMFG-GFFKSVVKSADEVLFSGVK--EVDDFFEQEKNFLINYYNRIKDSCAKADR 127

Query: 1032 LVNHRKELA---LNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQEQANNDF 1202
            +    K +A   ++TA    SLA    SE+ T + + L ++AE+ EK+ ++    ++++ 
Sbjct: 128  MTRSHKNVADDYIHTAACLHSLA----SEEPTVIKKYLLKVAELFEKLRKVESRVSSDED 183

Query: 1203 FLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWANKPDKLQQA 1382
              L ELL  Y+  +   +    +R K    ++++   L K R         ++  KL +A
Sbjct: 184  LKLTELLRYYMLNIEAAKDLLYRRTKALIDYENSNKALDKAR-------LKSRDIKLAEA 236

Query: 1383 KDEIIEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFENHVIKYLE 1529
              +         +  + FE++S   ++E+I F++++   F  ++I+  E
Sbjct: 237  HQQ---------ECCQKFEQLSESAKEELINFKRKRVAAFRKNLIEMSE 276


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 42,114,673
Number of extensions: 1131414
Number of successful extensions: 4908
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 4878
Number of HSP's successfully gapped: 14
Length of query: 610
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 505
Effective length of database: 8,729,747
Effective search space: 4408522235
Effective search space used: 4408522235
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013943
         (1830 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_062701.2| sorting nexin-1 [Mus musculus].                      878   0.0  
Alignment   gi|NP_080662.1| sorting nexin-2 [Mus musculus].                      557   e-159
Alignment   gi|NP_001019731.1| sorting nexin-32 [Mus musculus].                   96   7e-20
Alignment   gi|NP_001186117.1| sorting nexin-5 [Mus musculus].                    92   1e-18
Alignment   gi|NP_077187.1| sorting nexin-5 [Mus musculus].                       92   1e-18
Alignment   gi|NP_001177085.1| sorting nexin-7 isoform 2 [Mus musculus].          86   7e-17
Alignment   gi|NP_766056.1| sorting nexin-30 [Mus musculus].                      84   4e-16
Alignment   gi|NP_083931.2| sorting nexin-7 isoform 1 [Mus musculus].             83   6e-16
Alignment   gi|NP_081274.2| sorting nexin-6 [Mus musculus].                       83   8e-16
Alignment   gi|NP_001103781.1| sorting nexin-12 isoform 2 [Mus musculus].         74   5e-13

>ref|NP_062701.2| sorting nexin-1 [Mus musculus].
          Length = 521

 Score =  878 bits (2268), Expect = 0.0
 Identities = 455/522 (87%), Positives = 466/522 (89%)
 Frame = +3

Query: 36   MASGGGGCSAXXXXXXXXXXXXXXXXGATGGSEPEAGDSDTEGEDIFTGAAAASKPQSPK 215
            MASGGGGCSA                GA GGSEPEAGDSDTEGEDIFTGAAAA+KPQSPK
Sbjct: 1    MASGGGGCSASERLPPPFPGMDPESEGAAGGSEPEAGDSDTEGEDIFTGAAAATKPQSPK 60

Query: 216  RIASLLPINNGSKENGIHEEQDQEPQDLFADATVELSLDSTQNNQKKLPAKTLISLPPQE 395
            +  SL PI NGSKENGIHE+QDQEPQDLFADATVELSLDSTQNNQK +P KTL S PPQE
Sbjct: 61   KTTSLFPIKNGSKENGIHEDQDQEPQDLFADATVELSLDSTQNNQKTMPGKTLTSHPPQE 120

Query: 396  ATNSSKLQPSYXXXXXXXXXXXXXXTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQ 575
            ATNS K QPSY              TVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRS+Q
Sbjct: 121  ATNSPKPQPSYEELEEEQEDQFDL-TVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSRQ 179

Query: 576  FSVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRA 755
            F+VKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRA
Sbjct: 180  FAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRA 239

Query: 756  ALERYLQRIVNHPTMVQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTI 935
            ALERYLQRIVNHPTM+QDPDVREFLEKEELPRAVGTQ LSGAGLLKMFNKATDAVSKMTI
Sbjct: 240  ALERYLQRIVNHPTMLQDPDVREFLEKEELPRAVGTQALSGAGLLKMFNKATDAVSKMTI 299

Query: 936  KMNESDIWFXXXXXXXXXXXQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDN 1115
            KMNESDIWF           QRLRKLHAVVETLVNHRKELALNTA FAKSLAMLGSSEDN
Sbjct: 300  KMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAMLGSSEDN 359

Query: 1116 TALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRW 1295
            TALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRW
Sbjct: 360  TALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRW 419

Query: 1296 QDAQATLQKKREAEARLLWANKPDKLQQAKDEIIEWESRVTQYERDFERISTVVRKEVIR 1475
            QDAQATLQKKRE+EARLLWANKPDKLQQAKDEI EWESRVTQYERDFERISTVVRKEV R
Sbjct: 420  QDAQATLQKKRESEARLLWANKPDKLQQAKDEITEWESRVTQYERDFERISTVVRKEVTR 479

Query: 1476 FEKEKSKDFENHVIKYLETLLYSQQQLAKYWEAFLPEAKAIS 1601
            FEKEKSKDF+NHV+KYLETLL+SQQQLAKYWEAFLPEAKAIS
Sbjct: 480  FEKEKSKDFKNHVMKYLETLLHSQQQLAKYWEAFLPEAKAIS 521


>ref|NP_080662.1| sorting nexin-2 [Mus musculus].
          Length = 519

 Score =  557 bits (1436), Expect = e-159
 Identities = 301/511 (58%), Positives = 372/511 (72%), Gaps = 18/511 (3%)
 Frame = +3

Query: 123  GGSEPEAGDSDTEGEDIFTGAAAA--SKPQSPKRIA----SLLPINNGSKENGIHEEQDQ 284
            G  +P   +   +GED+FT   +   S P SP+  +     +   +NGSK   +  + D+
Sbjct: 11   GDVKPTDFEELEDGEDLFTSTVSTLESSPSSPEPASLPAEDISANSNGSKPVEVVLDDDR 70

Query: 285  EPQDLFADATVELSLDSTQN----NQKKLPAKTLIS-----LPPQEATNSSK---LQPSY 428
            E  DLFA+AT E+SLDS +     + +  PA T ++      P  E+ + S       S 
Sbjct: 71   E--DLFAEATEEVSLDSPERELILSSEPSPAVTPVTPTTLIAPRIESKSISAPVIFDRSR 128

Query: 429  XXXXXXXXXXXXXXTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQFSVKRRFSDFL 608
                           +G++DPEK+GDGMNAY+AY+VTT+TSL MF   +FSVKRRFSDFL
Sbjct: 129  DEIEEEANGDIFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFL 188

Query: 609  GLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVN 788
            GL+ KL+ K+   G+IVPP PEKS++GMTKVKVGKEDSSS EF+EKRRAALERYLQR V 
Sbjct: 189  GLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVK 248

Query: 789  HPTMVQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFXX 968
            HPT++QDPD+R+FLE  ELPRAV TQ LSGAG+L+M NKA DAV+KMTIKMNESD WF  
Sbjct: 249  HPTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKAADAVNKMTIKMNESDAWFEE 308

Query: 969  XXXXXXXXXQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLA 1148
                     Q+LRKLHA VE LV HRKEL+ NTA FAKS AMLG+SED+TALSRALSQLA
Sbjct: 309  KQQQFENLDQQLRKLHASVEALVCHRKELSANTAAFAKSAAMLGNSEDHTALSRALSQLA 368

Query: 1149 EVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKR 1328
            EVEEKI+QLHQEQA  DF++ +ELLSDYIRL+A V+  FD RMK WQ+W+DAQ TL KKR
Sbjct: 369  EVEEKIDQLHQEQAFADFYMFSELLSDYIRLIAAVKGVFDHRMKCWQKWEDAQITLLKKR 428

Query: 1329 EAEARLLWANKPDKLQQAKDEIIEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFEN 1508
            E EA+++ ANKPDK+QQAK+EI EWE++V Q ERDFE+IS  +RKEV RFEKE+ KDF+ 
Sbjct: 429  ETEAKMMVANKPDKIQQAKNEIREWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKA 488

Query: 1509 HVIKYLETLLYSQQQLAKYWEAFLPEAKAIS 1601
             +IKYLE+L+ +QQQL KYWEAFLPEAKAI+
Sbjct: 489  VIIKYLESLVQTQQQLIKYWEAFLPEAKAIA 519


>ref|NP_001019731.1| sorting nexin-32 [Mus musculus].
          Length = 404

 Score = 96.3 bits (238), Expect = 7e-20
 Identities = 90/357 (25%), Positives = 162/357 (45%), Gaps = 21/357 (5%)
 Frame = +3

Query: 522  VAYKVTTQTSLPMFRSKQFSVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKV 701
            V + V T++ LP F   +FSV R+  +F+ L++   E     G I+PP P +     ++ 
Sbjct: 41   VKFTVQTKSGLPHFAQSEFSVVRQHEEFIWLHDTYVENEEYAGLIIPPAPPRPDFEASRE 100

Query: 702  KVGK--EDSSS--------------AEFL---EKRRAALERYLQRIVNHPTMVQDPDVRE 824
            K+ K  E +SS              AE+L   +K  A  E +LQR+  HPT+ +D +   
Sbjct: 101  KLQKLGEGNSSITREEFSKMKQELEAEYLAIFKKTVAMHEVFLQRLAAHPTLRRDHNFSV 160

Query: 825  FLE-KEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTIK-MNESDIWFXXXXXXXXXXXQ 998
            FLE  ++L      +     GLL+   ++ D V    I  + E D +F            
Sbjct: 161  FLEYSQDLSVREKNRKEVLGGLLRSIVRSADEVLITGISGLKEVDDFFEHERTFLVEYHT 220

Query: 999  RLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLH 1178
            R+R      + +++  K LA N    + +L+ LG+ E N  L R+  +LAE+ E++ +L 
Sbjct: 221  RIRDTCQRADRVMHSHKCLADNYIPISAALSSLGTQEVN-QLKRSFLKLAELFERLRKLE 279

Query: 1179 QEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWAN 1358
               A+++   L+++L  Y+R     +    +R++    +++A   L              
Sbjct: 280  GRVASDEDLKLSDMLRYYMRDSQAAKDLLYRRLRALADYENANKAL-------------- 325

Query: 1359 KPDKLQQAKDEIIEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFENHVIKYLE 1529
              DK +    E+   ESR     + FER+S   ++E++ F+  +   F  ++I+  E
Sbjct: 326  --DKARTRNREVRPAESRQQLCCQRFERLSDSAKQELMDFKSRRVSSFRKNLIELAE 380


>ref|NP_001186117.1| sorting nexin-5 [Mus musculus].
          Length = 404

 Score = 92.4 bits (228), Expect = 1e-18
 Identities = 91/360 (25%), Positives = 165/360 (45%), Gaps = 24/360 (6%)
 Frame = +3

Query: 522  VAYKVTTQTSLPMFRSKQFSVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLI----- 686
            V + V T+T+L  F+S +FSV R+  DF+ L++ L+E     G I+PP P K        
Sbjct: 45   VKFTVHTKTTLSTFQSPEFSVTRQHEDFVWLHDTLTETTDYAGLIIPPAPTKPDFDGPRE 104

Query: 687  ----------GMTKVKVGK-EDSSSAEFL---EKRRAALERYLQRIVNHPTMVQDPDVRE 824
                       MTK +  K +    AE+L   +K  +  E +LQR+ +HP + +D +   
Sbjct: 105  KMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSTHEVFLQRLSSHPVLSKDRNFHV 164

Query: 825  FLEKEE--LPRAVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFXXXXXXXXXXXQ 998
            FLE ++    R   T+ + G G  K   K+ D V    +K  E D +F            
Sbjct: 165  FLEYDQDLSVRRKNTKEMFG-GFFKSVVKSADEVLFSGVK--EVDDFFEQEKNFLINYYN 221

Query: 999  RLRKLHAVVETLVNHRKELA---LNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIE 1169
            R++   A  + +    K +A   ++TA    SLA+    E+ T + + L ++AE+ EK+ 
Sbjct: 222  RIKDSCAKADKMTRSHKNVADDYIHTAACLHSLAL----EEPTVIKKYLLKVAELFEKLR 277

Query: 1170 QLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLL 1349
            ++    ++++   L ELL  Y+  +   +    +R K    ++++   L K R       
Sbjct: 278  KVEGRVSSDEDLKLTELLRYYMLNIEAAKDLLYRRTKALIDYENSNKALDKAR------- 330

Query: 1350 WANKPDKLQQAKDEIIEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFENHVIKYLE 1529
              +K  KL          E+   +  + FE++S   ++E+I F++++   F  ++I+  E
Sbjct: 331  LKSKDVKLA---------ETHQQECCQKFEQLSESAKEELINFKRKRVAAFRKNLIEMSE 381


>ref|NP_077187.1| sorting nexin-5 [Mus musculus].
          Length = 404

 Score = 92.4 bits (228), Expect = 1e-18
 Identities = 91/360 (25%), Positives = 165/360 (45%), Gaps = 24/360 (6%)
 Frame = +3

Query: 522  VAYKVTTQTSLPMFRSKQFSVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLI----- 686
            V + V T+T+L  F+S +FSV R+  DF+ L++ L+E     G I+PP P K        
Sbjct: 45   VKFTVHTKTTLSTFQSPEFSVTRQHEDFVWLHDTLTETTDYAGLIIPPAPTKPDFDGPRE 104

Query: 687  ----------GMTKVKVGK-EDSSSAEFL---EKRRAALERYLQRIVNHPTMVQDPDVRE 824
                       MTK +  K +    AE+L   +K  +  E +LQR+ +HP + +D +   
Sbjct: 105  KMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSTHEVFLQRLSSHPVLSKDRNFHV 164

Query: 825  FLEKEE--LPRAVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFXXXXXXXXXXXQ 998
            FLE ++    R   T+ + G G  K   K+ D V    +K  E D +F            
Sbjct: 165  FLEYDQDLSVRRKNTKEMFG-GFFKSVVKSADEVLFSGVK--EVDDFFEQEKNFLINYYN 221

Query: 999  RLRKLHAVVETLVNHRKELA---LNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIE 1169
            R++   A  + +    K +A   ++TA    SLA+    E+ T + + L ++AE+ EK+ 
Sbjct: 222  RIKDSCAKADKMTRSHKNVADDYIHTAACLHSLAL----EEPTVIKKYLLKVAELFEKLR 277

Query: 1170 QLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLL 1349
            ++    ++++   L ELL  Y+  +   +    +R K    ++++   L K R       
Sbjct: 278  KVEGRVSSDEDLKLTELLRYYMLNIEAAKDLLYRRTKALIDYENSNKALDKAR------- 330

Query: 1350 WANKPDKLQQAKDEIIEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFENHVIKYLE 1529
              +K  KL          E+   +  + FE++S   ++E+I F++++   F  ++I+  E
Sbjct: 331  LKSKDVKLA---------ETHQQECCQKFEQLSESAKEELINFKRKRVAAFRKNLIEMSE 381


>ref|NP_001177085.1| sorting nexin-7 isoform 2 [Mus musculus].
          Length = 394

 Score = 86.3 bits (212), Expect = 7e-17
 Identities = 85/424 (20%), Positives = 176/424 (41%), Gaps = 28/424 (6%)
 Frame = +3

Query: 159  EGEDIFTGAAAASKPQSPKRIASLLPINNGS----KENGIHEEQDQEPQDLFADATVELS 326
            +GE + +G++  +  +SP+  A + P  +GS    + + +  ++D++  ++F+    + S
Sbjct: 2    DGERLASGSSELAVGESPRGGAPI-PSGSGSCSLLQADVLDLDEDEDDLEVFSK---DAS 57

Query: 327  LDSTQNNQKKLPAKTLISLPPQEATNSSKLQPSYXXXXXXXXXXXXXXTVGITDPEKIGD 506
            L    +    +P   L  +   +  +   L+  +               + +  PE    
Sbjct: 58   LMDMNSFSPMMPTSPLSMINQIKFEDGPDLKDLF---------------ITVDAPESHVT 102

Query: 507  GMNAYVAYKVTTQTSLPMFRSKQFSVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLI 686
             +  ++ Y++ T+TS   F S +F V+RR+ DFL L  KL E H     I+PP PEK ++
Sbjct: 103  TIETFITYRIVTKTSRGEFDSSEFEVRRRYQDFLWLKGKLEEAHPT--LIIPPLPEKFIV 160

Query: 687  GMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMVQDPDVREFL--EKEELPRAVG 860
                   G  +  + +F+E RR AL ++L RI +HPT+  + D + FL  + EEL     
Sbjct: 161  ------KGMVERFNDDFIETRRKALHKFLNRIADHPTLTFNEDFKVFLTAQAEEL----S 210

Query: 861  TQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFXXXXXXXXXXXQRLRKLHAVVETLVN 1040
            +    G GLL    +   AV+     +      F           Q++  +  + + +  
Sbjct: 211  SYKKQGPGLLSRMGQTVRAVASSMRGVKNRPEEFMEMNNFIETFSQKINLIDKISQRIYK 270

Query: 1041 HRKELALNTAQFAKSLAMLGSSEDN-----TALSRALSQLAEVEEK---------IEQLH 1178
              ++      ++     +  +SE+        ++  + Q  +  EK         +  +H
Sbjct: 271  EERDYFDEMKEYGPIHILWSASEEELVDTLKGMAGCIEQCCKATEKRMAGLSEALLPVVH 330

Query: 1179 QEQANNDFFL--------LAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREA 1334
            +    ++  +        +   L   +  L   +A  D  + TW+ +  +Q  L  + ++
Sbjct: 331  EYVLYSEMLVGVMKRRDQIQTELDSKVEALTYKKADIDLCLATWESFLTSQTDLPSEEDS 390

Query: 1335 EARL 1346
            E +L
Sbjct: 391  EEKL 394


>ref|NP_766056.1| sorting nexin-30 [Mus musculus].
          Length = 437

 Score = 84.0 bits (206), Expect = 4e-16
 Identities = 80/370 (21%), Positives = 157/370 (42%)
 Frame = +3

Query: 474  VGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQFSVKRRFSDFLGLYEKLSEKHSQNGF 653
            V + DP+K    M  Y+ Y++TT+++   F   ++SV+RR+ DF  L  KL E  SQ   
Sbjct: 93   VTVDDPKKHVCTMETYITYRITTKSTRVEFDLPEYSVRRRYQDFDWLRNKLEE--SQPTH 150

Query: 654  IVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMVQDPDVREFLE 833
            ++PP PEK ++       G  D  S EF+E RR AL+++L+RI +HP +  +     FL 
Sbjct: 151  LIPPLPEKFVV------KGVVDRFSEEFVETRRKALDKFLKRITDHPVLSFNEHFNVFLT 204

Query: 834  KEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFXXXXXXXXXXXQRLRKL 1013
             ++L          G  LL    ++   V+    K+    + F            +L  +
Sbjct: 205  AKDL----NAYKKQGIALLSRVGESVKHVTG-GYKLRSRPLEFAAISDYLDTFALKLGTI 259

Query: 1014 HAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQEQAN 1193
              + + ++    E  +   ++    +   + E          +LAE  E +         
Sbjct: 260  DRIAQRIIKEEIEYLVELREYGPVYSTWSALE---------GELAEPLEGVSAC----IG 306

Query: 1194 NDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWANKPDKL 1373
            N    L EL  D       +   F   ++ +  + D+   + KKR+ + +  +  K + +
Sbjct: 307  NCSTALEELTDD-------ITEEFLPVLREYVLYSDSMKGVLKKRD-QVQAEYEAKLEAV 358

Query: 1374 QQAKDEIIEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFENHVIKYLETLLYSQQQ 1553
               K+E  +  + V + +   E  +  ++ ++ R++  K  DF   ++   +  +   ++
Sbjct: 359  ALRKEERPKVPADVEKCQDRMECFNADLKADMERWQSNKRHDFRQLLVGLADKNIQYYEK 418

Query: 1554 LAKYWEAFLP 1583
                WE+ +P
Sbjct: 419  CLMAWESIIP 428


>ref|NP_083931.2| sorting nexin-7 isoform 1 [Mus musculus].
          Length = 445

 Score = 83.2 bits (204), Expect = 6e-16
 Identities = 96/480 (20%), Positives = 193/480 (40%), Gaps = 6/480 (1%)
 Frame = +3

Query: 159  EGEDIFTGAAAASKPQSPKRIASLLPINNGS----KENGIHEEQDQEPQDLFADATVELS 326
            +GE + +G++  +  +SP+  A + P  +GS    + + +  ++D++  ++F+    + S
Sbjct: 2    DGERLASGSSELAVGESPRGGAPI-PSGSGSCSLLQADVLDLDEDEDDLEVFSK---DAS 57

Query: 327  LDSTQNNQKKLPAKTLISLPPQEATNSSKLQPSYXXXXXXXXXXXXXXTVGITDPEKIGD 506
            L    +    +P   L  +   +  +   L+  +               + +  PE    
Sbjct: 58   LMDMNSFSPMMPTSPLSMINQIKFEDGPDLKDLF---------------ITVDAPESHVT 102

Query: 507  GMNAYVAYKVTTQTSLPMFRSKQFSVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLI 686
             +  ++ Y++ T+TS   F S +F V+RR+ DFL L  KL E H     I+PP PEK ++
Sbjct: 103  TIETFITYRIVTKTSRGEFDSSEFEVRRRYQDFLWLKGKLEEAHPT--LIIPPLPEKFIV 160

Query: 687  GMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMVQDPDVREFL--EKEELPRAVG 860
                   G  +  + +F+E RR AL ++L RI +HPT+  + D + FL  + EEL     
Sbjct: 161  ------KGMVERFNDDFIETRRKALHKFLNRIADHPTLTFNEDFKVFLTAQAEEL----S 210

Query: 861  TQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFXXXXXXXXXXXQRLRKLHAVVETLVN 1040
            +    G GLL    +   AV+     +      F           Q++  +  + + +  
Sbjct: 211  SYKKQGPGLLSRMGQTVRAVASSMRGVKNRPEEFMEMNNFIETFSQKINLIDKISQRIYK 270

Query: 1041 HRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLAEL 1220
              ++      ++     +  +SE+   L   L  +A   E+  +  +++       L  +
Sbjct: 271  EERDYFDEMKEYGPIHILWSASEEE--LVDTLKGMAGCIEQCCKATEKRMAGLSEALLPV 328

Query: 1221 LSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWANKPDKLQQAKDEIIE 1400
            + +Y+    ++     +R          Q  L  K EA            L   K +I  
Sbjct: 329  VHEYVLYSEMLVGVMKRR-------DQIQTELDSKVEA------------LTYKKADIDL 369

Query: 1401 WESRVTQYERDFERISTVVRKEVIRFEKEKSKDFENHVIKYLETLLYSQQQLAKYWEAFL 1580
                + + E   E  +  ++ +  R+++    D  +      E  +   +Q    WE+FL
Sbjct: 370  LTEEIGKLEDKVECANNALKADWERWKQNMKNDLRSAFTDTAEQNIRYYEQCLATWESFL 429


>ref|NP_081274.2| sorting nexin-6 [Mus musculus].
          Length = 406

 Score = 82.8 bits (203), Expect = 8e-16
 Identities = 78/356 (21%), Positives = 151/356 (42%), Gaps = 20/356 (5%)
 Frame = +3

Query: 522  VAYKVTTQTSLPMFRSKQFSVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKV 701
            V + V T++SLP F+  +FSV R+  +F+ L++   E     G+I+PP P +     ++ 
Sbjct: 46   VKFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASRE 105

Query: 702  KVGK----EDSSSAEFLEKRRAALER---------------YLQRIVNHPTMVQDPDVRE 824
            K+ K    E S + E   K +  LE                +L R+  HP + +D +   
Sbjct: 106  KLQKLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRKDLNFHV 165

Query: 825  FLE-KEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFXXXXXXXXXXXQR 1001
            FLE  ++L      +        K   K+ D V    +K  + D +F            R
Sbjct: 166  FLEYNQDLSVRGKNKKEKLEDFFKNMVKSADGVIVSGVK--DVDDFFEHERTFLLEYHNR 223

Query: 1002 LRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQ 1181
            ++   A  + +    K  A +  +   SL  LG ++D+T + +   +++E+ +K  ++  
Sbjct: 224  VKDASAKSDRMTRSHKSAADDYNRIGSSLYALG-TQDSTDICKFFLKVSELFDKTRKIEA 282

Query: 1182 EQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWANK 1361
              + ++   L++LL  Y+R     +    +R ++   +++A   L K R     +L A  
Sbjct: 283  RVSADEDLKLSDLLKYYLRESQAAKDLLYRRSRSLVDYENANKALDKARAKNKDVLQAET 342

Query: 1362 PDKLQQAKDEIIEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFENHVIKYLE 1529
              +L   K                FE+IS   ++E+I F+  +   F  ++++  E
Sbjct: 343  SQQLCCQK----------------FEKISESAKQELIDFKTRRVAAFRKNLVELAE 382


>ref|NP_001103781.1| sorting nexin-12 isoform 2 [Mus musculus].
          Length = 170

 Score = 73.6 bits (179), Expect = 5e-13
 Identities = 42/126 (33%), Positives = 72/126 (57%)
 Frame = +3

Query: 474 VGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQFSVKRRFSDFLGLYEKLSEKHSQNGF 653
           + I +P+ +G G   +  Y+V  +T+LP+F+ K+  V+RR+SDF  L  +L E+ S+   
Sbjct: 32  IDIFNPQTVGVGRARFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNEL-ERDSK--I 88

Query: 654 IVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMVQDPDVREFLE 833
           +VPP P K+L      + G E      F+E+RR  LE+++ +I  HP    +  +  FL+
Sbjct: 89  VVPPLPGKALKRQLPFR-GDEGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQ 147

Query: 834 KEELPR 851
           +E + R
Sbjct: 148 EEAIDR 153


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 56,762,239
Number of extensions: 1492516
Number of successful extensions: 6227
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 6183
Number of HSP's successfully gapped: 15
Length of query: 610
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 503
Effective length of database: 12,403,707
Effective search space: 6239064621
Effective search space used: 6239064621
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013943
         (1830 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_003090.2| sorting nexin-1 isoform a [Homo sapiens].            897   0.0  
Alignment   gi|NP_001229862.1| sorting nexin-1 isoform d [Homo sapiens].         865   0.0  
Alignment   gi|NP_683758.1| sorting nexin-1 isoform b [Homo sapiens].            701   0.0  
Alignment   gi|NP_003091.2| sorting nexin-2 [Homo sapiens].                      559   e-159
Alignment   gi|NP_689413.1| sorting nexin-5 [Homo sapiens].                       95   2e-19
Alignment   gi|NP_055241.1| sorting nexin-5 [Homo sapiens].                       95   2e-19
Alignment   gi|NP_057060.2| sorting nexin-7 isoform a [Homo sapiens].             91   4e-18
Alignment   gi|NP_689973.2| sorting nexin-32 [Homo sapiens].                      91   5e-18
Alignment   gi|NP_689419.2| sorting nexin-6 isoform b [Homo sapiens].             83   1e-15
Alignment   gi|NP_001013012.1| sorting nexin-30 [Homo sapiens].                   82   2e-15

>ref|NP_003090.2| sorting nexin-1 isoform a [Homo sapiens].
          Length = 522

 Score =  897 bits (2317), Expect = 0.0
 Identities = 465/522 (89%), Positives = 472/522 (90%)
 Frame = +3

Query: 36   MASGGGGCSAXXXXXXXXXXXXXXXXGATGGSEPEAGDSDTEGEDIFTGAAAASKPQSPK 215
            MASGGGGCSA                GA GGSEPEAGDSDTEGEDIFTGAA  SK QSPK
Sbjct: 1    MASGGGGCSASERLPPPFPGLEPESEGAAGGSEPEAGDSDTEGEDIFTGAAVVSKHQSPK 60

Query: 216  RIASLLPINNGSKENGIHEEQDQEPQDLFADATVELSLDSTQNNQKKLPAKTLISLPPQE 395
               SLLPINNGSKENGIHEEQDQEPQDLFADATVELSLDSTQNNQKK+ AKTLISLPPQE
Sbjct: 61   ITTSLLPINNGSKENGIHEEQDQEPQDLFADATVELSLDSTQNNQKKVLAKTLISLPPQE 120

Query: 396  ATNSSKLQPSYXXXXXXXXXXXXXXTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQ 575
            ATNSSK QP+Y              TVGITDPEKIGDGMNAYVAYKVTTQTSLP+FRSKQ
Sbjct: 121  ATNSSKPQPTYEELEEEEQEDQFDLTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQ 180

Query: 576  FSVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRA 755
            F+VKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRA
Sbjct: 181  FAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRA 240

Query: 756  ALERYLQRIVNHPTMVQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTI 935
            ALERYLQRIVNHPTM+QDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTI
Sbjct: 241  ALERYLQRIVNHPTMLQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTI 300

Query: 936  KMNESDIWFXXXXXXXXXXXQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDN 1115
            KMNESDIWF           QRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDN
Sbjct: 301  KMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDN 360

Query: 1116 TALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRW 1295
            TALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRW
Sbjct: 361  TALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRW 420

Query: 1296 QDAQATLQKKREAEARLLWANKPDKLQQAKDEIIEWESRVTQYERDFERISTVVRKEVIR 1475
            QDAQATLQKKREAEARLLWANKPDKLQQAKDEI+EWESRVTQYERDFERISTVVRKEVIR
Sbjct: 421  QDAQATLQKKREAEARLLWANKPDKLQQAKDEILEWESRVTQYERDFERISTVVRKEVIR 480

Query: 1476 FEKEKSKDFENHVIKYLETLLYSQQQLAKYWEAFLPEAKAIS 1601
            FEKEKSKDF+NHVIKYLETLLYSQQQLAKYWEAFLPEAKAIS
Sbjct: 481  FEKEKSKDFKNHVIKYLETLLYSQQQLAKYWEAFLPEAKAIS 522


>ref|NP_001229862.1| sorting nexin-1 isoform d [Homo sapiens].
          Length = 557

 Score =  865 bits (2234), Expect = 0.0
 Identities = 449/506 (88%), Positives = 456/506 (90%)
 Frame = +3

Query: 36   MASGGGGCSAXXXXXXXXXXXXXXXXGATGGSEPEAGDSDTEGEDIFTGAAAASKPQSPK 215
            MASGGGGCSA                GA GGSEPEAGDSDTEGEDIFTGAA  SK QSPK
Sbjct: 1    MASGGGGCSASERLPPPFPGLEPESEGAAGGSEPEAGDSDTEGEDIFTGAAVVSKHQSPK 60

Query: 216  RIASLLPINNGSKENGIHEEQDQEPQDLFADATVELSLDSTQNNQKKLPAKTLISLPPQE 395
               SLLPINNGSKENGIHEEQDQEPQDLFADATVELSLDSTQNNQKK+ AKTLISLPPQE
Sbjct: 61   ITTSLLPINNGSKENGIHEEQDQEPQDLFADATVELSLDSTQNNQKKVLAKTLISLPPQE 120

Query: 396  ATNSSKLQPSYXXXXXXXXXXXXXXTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQ 575
            ATNSSK QP+Y              TVGITDPEKIGDGMNAYVAYKVTTQTSLP+FRSKQ
Sbjct: 121  ATNSSKPQPTYEELEEEEQEDQFDLTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQ 180

Query: 576  FSVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRA 755
            F+VKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRA
Sbjct: 181  FAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRA 240

Query: 756  ALERYLQRIVNHPTMVQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTI 935
            ALERYLQRIVNHPTM+QDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTI
Sbjct: 241  ALERYLQRIVNHPTMLQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTI 300

Query: 936  KMNESDIWFXXXXXXXXXXXQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDN 1115
            KMNESDIWF           QRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDN
Sbjct: 301  KMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDN 360

Query: 1116 TALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRW 1295
            TALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRW
Sbjct: 361  TALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRW 420

Query: 1296 QDAQATLQKKREAEARLLWANKPDKLQQAKDEIIEWESRVTQYERDFERISTVVRKEVIR 1475
            QDAQATLQKKREAEARLLWANKPDKLQQAKDEI+EWESRVTQYERDFERISTVVRKEVIR
Sbjct: 421  QDAQATLQKKREAEARLLWANKPDKLQQAKDEILEWESRVTQYERDFERISTVVRKEVIR 480

Query: 1476 FEKEKSKDFENHVIKYLETLLYSQQQ 1553
            FEKEKSKDF+NHVIKYLETLLYSQQQ
Sbjct: 481  FEKEKSKDFKNHVIKYLETLLYSQQQ 506


>ref|NP_683758.1| sorting nexin-1 isoform b [Homo sapiens].
          Length = 457

 Score =  701 bits (1809), Expect = 0.0
 Identities = 384/524 (73%), Positives = 400/524 (76%), Gaps = 2/524 (0%)
 Frame = +3

Query: 36   MASGGGGCSAXXXXXXXXXXXXXXXXGATGGSEPEAGDSDTEGEDIFTGAAAASKPQSPK 215
            MASGGGGCSA                GA GGSEPEAGDS                     
Sbjct: 1    MASGGGGCSASERLPPPFPGLEPESEGAAGGSEPEAGDS--------------------- 39

Query: 216  RIASLLPINNGSKENGIHEEQDQEPQDLFADATVELSLDSTQNNQKKLPAKTLISLPPQE 395
                                 D E +D+F  A V         ++ + P  T   LP   
Sbjct: 40   ---------------------DTEGEDIFTGAAVV--------SKHQSPKITTSLLPINN 70

Query: 396  ATNSSKLQPSYXXXXXXXXXXXXXXTVGITDPEKI--GDGMNAYVAYKVTTQTSLPMFRS 569
             +  + +                       +P+ +  GDGMNAYVAYKVTTQTSLP+FRS
Sbjct: 71   GSKENGIHEEQDQ-----------------EPQDLFAGDGMNAYVAYKVTTQTSLPLFRS 113

Query: 570  KQFSVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKR 749
            KQF+VKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKR
Sbjct: 114  KQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKR 173

Query: 750  RAALERYLQRIVNHPTMVQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKM 929
            RAALERYLQRIVNHPTM+QDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKM
Sbjct: 174  RAALERYLQRIVNHPTMLQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKM 233

Query: 930  TIKMNESDIWFXXXXXXXXXXXQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSE 1109
            TIKMNESDIWF           QRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSE
Sbjct: 234  TIKMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSE 293

Query: 1110 DNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQ 1289
            DNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQ
Sbjct: 294  DNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQ 353

Query: 1290 RWQDAQATLQKKREAEARLLWANKPDKLQQAKDEIIEWESRVTQYERDFERISTVVRKEV 1469
            RWQDAQATLQKKREAEARLLWANKPDKLQQAKDEI+EWESRVTQYERDFERISTVVRKEV
Sbjct: 354  RWQDAQATLQKKREAEARLLWANKPDKLQQAKDEILEWESRVTQYERDFERISTVVRKEV 413

Query: 1470 IRFEKEKSKDFENHVIKYLETLLYSQQQLAKYWEAFLPEAKAIS 1601
            IRFEKEKSKDF+NHVIKYLETLLYSQQQLAKYWEAFLPEAKAIS
Sbjct: 414  IRFEKEKSKDFKNHVIKYLETLLYSQQQLAKYWEAFLPEAKAIS 457


>ref|NP_003091.2| sorting nexin-2 [Homo sapiens].
          Length = 519

 Score =  559 bits (1440), Expect = e-159
 Identities = 301/510 (59%), Positives = 371/510 (72%), Gaps = 17/510 (3%)
 Frame = +3

Query: 123  GGSEPEAGDSDTEGEDIFTGAAAA--SKPQSPKRIASLLPINNGSKENGIHEEQ---DQE 287
            G  +P   +   +GED+FT   +   S P SP+  ASL   +  +  NG    +   D +
Sbjct: 11   GDGKPTDFEDLEDGEDLFTSTVSTLESSPSSPEP-ASLPAEDISANSNGPKPTEVVLDDD 69

Query: 288  PQDLFADATVELSLDSTQN----NQKKLPAKTLIS-----LPPQEATNSSK---LQPSYX 431
             +DLFA+AT E+SLDS +     + +  PA T ++      P  E+ + S       S  
Sbjct: 70   REDLFAEATEEVSLDSPEREPILSSEPSPAVTPVTPTTLIAPRIESKSMSAPVIFDRSRE 129

Query: 432  XXXXXXXXXXXXXTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQFSVKRRFSDFLG 611
                          +G++DPEK+GDGMNAY+AY+VTT+TSL MF   +FSVKRRFSDFLG
Sbjct: 130  EIEEEANGDIFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLG 189

Query: 612  LYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNH 791
            L+ KL+ K+   G+IVPP PEKS++GMTKVKVGKEDSSS EF+EKRRAALERYLQR V H
Sbjct: 190  LHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKH 249

Query: 792  PTMVQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFXXX 971
            PT++QDPD+R+FLE  ELPRAV TQ LSGAG+L+M NKA DAV+KMTIKMNESD WF   
Sbjct: 250  PTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKAADAVNKMTIKMNESDAWFEEK 309

Query: 972  XXXXXXXXQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAE 1151
                    Q+LRKLH  VE LV HRKEL+ NTA FAKS AMLG+SED+TALSRALSQLAE
Sbjct: 310  QQQFENLDQQLRKLHVSVEALVCHRKELSANTAAFAKSAAMLGNSEDHTALSRALSQLAE 369

Query: 1152 VEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKRE 1331
            VEEKI+QLHQEQA  DF++ +ELLSDYIRL+A V+  FD RMK WQ+W+DAQ TL KKRE
Sbjct: 370  VEEKIDQLHQEQAFADFYMFSELLSDYIRLIAAVKGVFDHRMKCWQKWEDAQITLLKKRE 429

Query: 1332 AEARLLWANKPDKLQQAKDEIIEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFENH 1511
            AEA+++ ANKPDK+QQAK+EI EWE++V Q ERDFE+IS  +RKEV RFEKE+ KDF+  
Sbjct: 430  AEAKMMVANKPDKIQQAKNEIREWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTV 489

Query: 1512 VIKYLETLLYSQQQLAKYWEAFLPEAKAIS 1601
            +IKYLE+L+ +QQQL KYWEAFLPEAKAI+
Sbjct: 490  IIKYLESLVQTQQQLIKYWEAFLPEAKAIA 519


>ref|NP_689413.1| sorting nexin-5 [Homo sapiens].
          Length = 404

 Score = 94.7 bits (234), Expect = 2e-19
 Identities = 91/360 (25%), Positives = 166/360 (46%), Gaps = 24/360 (6%)
 Frame = +3

Query: 522  VAYKVTTQTSLPMFRSKQFSVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLI----- 686
            V + V T+T+LP F+S +FSV R+  DF+ L++ L E     G I+PP P K        
Sbjct: 45   VKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLIETTDYAGLIIPPAPTKPDFDGPRE 104

Query: 687  ----------GMTKVKVGK-EDSSSAEFL---EKRRAALERYLQRIVNHPTMVQDPDVRE 824
                       MTK +  K +    AE+L   +K  ++ E +LQR+ +HP + +D +   
Sbjct: 105  KMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHV 164

Query: 825  FLEKEE--LPRAVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFXXXXXXXXXXXQ 998
            FLE ++    R   T+ + G G  K   K+ D V    +K  E D +F            
Sbjct: 165  FLEYDQDLSVRRKNTKEMFG-GFFKSVVKSADEVLFTGVK--EVDDFFEQEKNFLINYYN 221

Query: 999  RLRKLHAVVETLVNHRKELA---LNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIE 1169
            R++      + +    K +A   ++TA    SLA+    E+ T + + L ++AE+ EK+ 
Sbjct: 222  RIKDSCVKADKMTRSHKNVADDYIHTAACLHSLAL----EEPTVIKKYLLKVAELFEKLR 277

Query: 1170 QLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLL 1349
            ++    ++++   L ELL  Y+  +   +    +R K    ++++   L K R       
Sbjct: 278  KVEGRVSSDEDLKLTELLRYYMLNIEAAKDLLYRRTKALIDYENSNKALDKAR------- 330

Query: 1350 WANKPDKLQQAKDEIIEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFENHVIKYLE 1529
              +K  KL +A  +         +  + FE++S   ++E+I F++++   F  ++I+  E
Sbjct: 331  LKSKDVKLAEAHQQ---------ECCQKFEQLSESAKEELINFKRKRVAAFRKNLIEMSE 381


>ref|NP_055241.1| sorting nexin-5 [Homo sapiens].
          Length = 404

 Score = 94.7 bits (234), Expect = 2e-19
 Identities = 91/360 (25%), Positives = 166/360 (46%), Gaps = 24/360 (6%)
 Frame = +3

Query: 522  VAYKVTTQTSLPMFRSKQFSVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLI----- 686
            V + V T+T+LP F+S +FSV R+  DF+ L++ L E     G I+PP P K        
Sbjct: 45   VKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLIETTDYAGLIIPPAPTKPDFDGPRE 104

Query: 687  ----------GMTKVKVGK-EDSSSAEFL---EKRRAALERYLQRIVNHPTMVQDPDVRE 824
                       MTK +  K +    AE+L   +K  ++ E +LQR+ +HP + +D +   
Sbjct: 105  KMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHV 164

Query: 825  FLEKEE--LPRAVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFXXXXXXXXXXXQ 998
            FLE ++    R   T+ + G G  K   K+ D V    +K  E D +F            
Sbjct: 165  FLEYDQDLSVRRKNTKEMFG-GFFKSVVKSADEVLFTGVK--EVDDFFEQEKNFLINYYN 221

Query: 999  RLRKLHAVVETLVNHRKELA---LNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIE 1169
            R++      + +    K +A   ++TA    SLA+    E+ T + + L ++AE+ EK+ 
Sbjct: 222  RIKDSCVKADKMTRSHKNVADDYIHTAACLHSLAL----EEPTVIKKYLLKVAELFEKLR 277

Query: 1170 QLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLL 1349
            ++    ++++   L ELL  Y+  +   +    +R K    ++++   L K R       
Sbjct: 278  KVEGRVSSDEDLKLTELLRYYMLNIEAAKDLLYRRTKALIDYENSNKALDKAR------- 330

Query: 1350 WANKPDKLQQAKDEIIEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFENHVIKYLE 1529
              +K  KL +A  +         +  + FE++S   ++E+I F++++   F  ++I+  E
Sbjct: 331  LKSKDVKLAEAHQQ---------ECCQKFEQLSESAKEELINFKRKRVAAFRKNLIEMSE 381


>ref|NP_057060.2| sorting nexin-7 isoform a [Homo sapiens].
          Length = 451

 Score = 90.9 bits (224), Expect = 4e-18
 Identities = 80/390 (20%), Positives = 167/390 (42%)
 Frame = +3

Query: 474  VGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQFSVKRRFSDFLGLYEKLSEKHSQNGF 653
            + + +PE     +  ++ Y++ T+TS   F S +F V+RR+ DFL L  KL E H     
Sbjct: 98   ITVDEPESHVTTIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKLEEAHPT--L 155

Query: 654  IVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMVQDPDVREFLE 833
            I+PP PEK ++       G  +  + +F+E RR AL ++L RI +HPT+  + D + FL 
Sbjct: 156  IIPPLPEKFIV------KGMVERFNDDFIETRRKALHKFLNRIADHPTLTFNEDFKIFLT 209

Query: 834  KEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFXXXXXXXXXXXQRLRKL 1013
             +     + +    G GLL    +   AV+     +      F           Q++  +
Sbjct: 210  AQAW--ELSSHKKQGPGLLSRMGQTVRAVASSMRGVKNRPEEFMEMNNFIELFSQKINLI 267

Query: 1014 HAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQEQAN 1193
              + + +    +E      ++     +  +SE++  L   L  +A   ++  +  +++ +
Sbjct: 268  DKISQRIYKEEREYFDEMKEYGPIHILWSASEED--LVDTLKDVASCIDRCCKATEKRMS 325

Query: 1194 NDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWANKPDKL 1373
                 L  ++ +Y+    ++     +R +  Q   D++  +   ++A+  LL    P+++
Sbjct: 326  GLSEALLPVVHEYVLYSEMLMGVMKRRDQI-QAELDSKVEVLTYKKADTDLL----PEEI 380

Query: 1374 QQAKDEIIEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFENHVIKYLETLLYSQQQ 1553
             + +D++              E  +  ++ +  R+++    D +       E  ++  +Q
Sbjct: 381  GKLEDKV--------------ECANNALKADWERWKQNMQNDIKLAFTDMAEENIHYYEQ 426

Query: 1554 LAKYWEAFLPEAKAIS*RTEDTRAHLPDAA 1643
                WE+FL         T  T  HL +A+
Sbjct: 427  CLATWESFL---------TSQTNLHLEEAS 447


>ref|NP_689973.2| sorting nexin-32 [Homo sapiens].
          Length = 403

 Score = 90.5 bits (223), Expect = 5e-18
 Identities = 86/357 (24%), Positives = 158/357 (44%), Gaps = 21/357 (5%)
 Frame = +3

Query: 522  VAYKVTTQTSLPMFRSKQFSVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTK- 698
            V + V T++ LP F   +FSV R+  +F+ L++   E     G I+PP P +     ++ 
Sbjct: 40   VKFTVQTKSCLPHFAQTEFSVVRQHEEFIWLHDAYVENEEYAGLIIPPAPPRPDFEASRE 99

Query: 699  --VKVGKEDSS-------------SAEFL---EKRRAALERYLQRIVNHPTMVQDPDVRE 824
               K+G+ DSS              AE+L   +K  A  E +LQR+  HPT+ +D +   
Sbjct: 100  KLQKLGEGDSSVTREEFAKMKQELEAEYLAIFKKTVAMHEVFLQRLAAHPTLRRDHNFFV 159

Query: 825  FLE--KEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFXXXXXXXXXXXQ 998
            FLE  ++   R    + L G  L  +   A +A+      + E D +F            
Sbjct: 160  FLEYGQDLSVRGKNRKELLGGFLRNIVKSADEALITGMSGLKEVDDFFEHERTFLLEYHT 219

Query: 999  RLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLH 1178
            R+R      + ++   K LA +    + +L+ LG+ E N  L  +  +LAE+ E++ +L 
Sbjct: 220  RIRDACLRADRVMRAHKCLADDYIPISAALSSLGTQEVN-QLRTSFLKLAELFERLRKLE 278

Query: 1179 QEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWAN 1358
               A+++   L+++L  Y+R     +    +R++    +++A   L              
Sbjct: 279  GRVASDEDLKLSDMLRYYMRDSQAAKDLLYRRLRALADYENANKAL-------------- 324

Query: 1359 KPDKLQQAKDEIIEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFENHVIKYLE 1529
              DK +    E+   ES      + FER+S   ++E++ F+  +   F  ++I+  E
Sbjct: 325  --DKARTRNREVRPAESHQQLCCQRFERLSDSAKQELMDFKSRRVSSFRKNLIELAE 379


>ref|NP_689419.2| sorting nexin-6 isoform b [Homo sapiens].
          Length = 418

 Score = 82.8 bits (203), Expect = 1e-15
 Identities = 78/356 (21%), Positives = 151/356 (42%), Gaps = 20/356 (5%)
 Frame = +3

Query: 522  VAYKVTTQTSLPMFRSKQFSVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKV 701
            V + V T++SLP F+  +FSV R+  +F+ L++   E     G+I+PP P +     ++ 
Sbjct: 58   VKFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASRE 117

Query: 702  KVGK----EDSSSAEFLEKRRAALER---------------YLQRIVNHPTMVQDPDVRE 824
            K+ K    E S + E   K +  LE                +L R+  HP + +D +   
Sbjct: 118  KLQKLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRRDLNFHV 177

Query: 825  FLE-KEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFXXXXXXXXXXXQR 1001
            FLE  ++L      +        K   K+ D V    +K  + D +F            R
Sbjct: 178  FLEYNQDLSVRGKNKKEKLEDFFKNMVKSADGVIVSGVK--DVDDFFEHERTFLLEYHNR 235

Query: 1002 LRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQ 1181
            ++   A  + +    K  A +  +   SL  LG ++D+T + +   +++E+ +K  ++  
Sbjct: 236  VKDASAKSDRMTRSHKSAADDYNRIGSSLYALG-TQDSTDICKFFLKVSELFDKTRKIEA 294

Query: 1182 EQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWANK 1361
              + ++   L++LL  Y+R     +    +R ++   +++A   L K R     +L A  
Sbjct: 295  RVSADEDLKLSDLLKYYLRESQAAKDLLYRRSRSLVDYENANKALDKARAKNKDVLQAET 354

Query: 1362 PDKLQQAKDEIIEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFENHVIKYLE 1529
              +L   K                FE+IS   ++E+I F+  +   F  ++++  E
Sbjct: 355  SQQLCCQK----------------FEKISESAKQELIDFKTRRVAAFRKNLVELAE 394


>ref|NP_001013012.1| sorting nexin-30 [Homo sapiens].
          Length = 437

 Score = 81.6 bits (200), Expect = 2e-15
 Identities = 80/370 (21%), Positives = 157/370 (42%), Gaps = 2/370 (0%)
 Frame = +3

Query: 480  ITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQFSVKRRFSDFLGLYEKLSEKHSQNGFIV 659
            + DP+K    M  Y+ Y++TT+++   F   ++SV+RR+ DF  L  KL E  SQ   ++
Sbjct: 95   VDDPKKHVCTMETYITYRITTKSTRVEFDLPEYSVRRRYQDFDWLRSKLEE--SQPTHLI 152

Query: 660  PPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMVQDPDVREFLEKE 839
            PP PEK ++       G  D  S EF+E RR AL+++L+RI +HP +  +     FL  +
Sbjct: 153  PPLPEKFVV------KGVVDRFSEEFVETRRKALDKFLKRITDHPVLSFNEHFNIFLTAK 206

Query: 840  ELPRAVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFXXXXXXXXXXXQRLRKLHA 1019
            +L          G  LL    ++   V+    K+    + F            +L  +  
Sbjct: 207  DL----NAYKKQGIALLTRMGESVKHVTG-GYKLRTRPLEFAAIGDYLDTFALKLGTIDR 261

Query: 1020 VVETLVNHRKELALNTAQFAKSLAMLGSSEDNTA--LSRALSQLAEVEEKIEQLHQEQAN 1193
            + + ++    E  +   ++    +   + E   A  L    + +      +E+L  +   
Sbjct: 262  IAQRIIKEEIEYLVELREYGPVYSTWSALEGELAEPLEGVSACIGNCSTALEEL-TDDMT 320

Query: 1194 NDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWANKPDKL 1373
             DF     +L +YI         +   MK+  + +D    +Q + EA+   +   K D+ 
Sbjct: 321  EDFL---PVLREYI--------LYSDSMKSVLKKRD---QVQAEYEAKLEAVALRKEDRP 366

Query: 1374 QQAKDEIIEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFENHVIKYLETLLYSQQQ 1553
            +   D        V + +   E  +  ++ ++ R++  K +DF   ++   +  +   ++
Sbjct: 367  KVPAD--------VEKCQDRMECFNADLKADMERWQNNKRQDFRQLLMGMADKNIQYYEK 418

Query: 1554 LAKYWEAFLP 1583
                WE+ +P
Sbjct: 419  CLMAWESIIP 428


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 67,010,679
Number of extensions: 1782156
Number of successful extensions: 7601
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 7563
Number of HSP's successfully gapped: 17
Length of query: 610
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 502
Effective length of database: 14,737,052
Effective search space: 7398000104
Effective search space used: 7398000104
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013943
         (1830 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr06                                                         944   0.0  
Sscrofa_Chr01                                                         490   e-135
gb|GL896470.2| Sus scrofa unplaced genomic scaffold ChrUScaf4354      414   e-113

>Sscrofa_Chr06 
||          Length = 157765593

 Score =  944 bits (476), Expect = 0.0
 Identities = 707/782 (90%), Gaps = 9/782 (1%)
 Strand = Plus / Minus

                                                                             
Query: 170       tattttcaccggcgccgcggcggccagtaagccccagtctccaaagagaattgcttccct 229
                 |||||||||| |||| |  ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 116830518 tattttcaccagcgctgatgcggccagtaagccccagtctccaaagagaattgctttcct 116830459

                                                                             
Query: 230       tcttcccatcaacaatggctccaaagaaaacggtatccatgaggaacaagaccaagagcc 289
                 |||||||||||||||| ||||| |||||||| | |||||||||||| |||||||||| ||
Sbjct: 116830458 tcttcccatcaacaatagctcccaagaaaacaggatccatgaggaataagaccaagatcc 116830399

                                                                             
Query: 290       acaggatctctttgcagatgccacagtggagctatccttggacagcacacaaaataatca 349
                 ||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 116830398 acaagatctctctgcagatgccacagtggaggtatccttggacagcacacaaaataatca 116830339

                                                                             
Query: 350       gaagaagctgccagccaaaacgctcatttctcttcctccacaggaagccacaaattcttc 409
                 |||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 116830338 gaagaatctgccagccaaaacgctcatttttcttcctccacaggaaggcacaaattcttc 116830279

                                                                             
Query: 410       taagctccagccaagctatgaggagctagaggaagaagaacaggaagaccagtttgattt 469
                 | ||  |||| |||||||||||||||||| |||||| ||| ||||||||||||||| |||
Sbjct: 116830278 tcaggcccagacaagctatgaggagctagtggaagaggaagaggaagaccagtttggttt 116830219

                                                                             
Query: 470       gacagtcggcataactgatcctgagaaaataggggatggtatgaatgcctatgtggccta 529
                 |||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 116830218 gacagtcggtgtaactgatcctgagaaaataggggatggtatgaattcctatgtggccta 116830159

                                                                             
Query: 530       caaagttacaacacagacgagcttaccaatgttcagaagtaaacagttttcagtgaaaag 589
                 || ||||||||||||||| ||||||||||||||||||| |||||||| | ||||||||| 
Sbjct: 116830158 cagagttacaacacagacaagcttaccaatgttcagaattaaacagtctgcagtgaaaa- 116830100

                                                                             
Query: 590       aagatttagtgactttctgggtctttacgagaagctttcagagaaacactcccagaatgg 649
                 |||| ||||||| |||||||||||||| ||||||||||||||||| | |||||  |||||
Sbjct: 116830099 aagaattagtgattttctgggtctttatgagaagctttcagagaacccctccccaaatgg 116830040

                                                                             
Query: 650       ctttattgtccctcctccaccagagaaaagcctaataggaatgacgaaagtaaaagttgg 709
                 ||||||||||| ||||| |||  ||| |||||||||||||||||| ||||||||||||||
Sbjct: 116830039 ctttattgtccttcctctacccaagagaagcctaataggaatgacaaaagtaaaagttgg 116829980

                                                                             
Query: 710       gaaggaagattcttcttctgcagagtttcttgaaaaacggagggctgccctagaaaggta 769
                 ||||        |||||||||||| ||||||  ||||| |||||||||||||||||| ||
Sbjct: 116829979 gaag-------attcttctgcagaatttctttgaaaactgagggctgccctagaaagcta 116829927

                                                                             
Query: 770       ccttcagaggattgtgaatcatcctaccatggtacaggaccctgatgtcagggagttctt 829
                 |||||||||||||| |||||||||||| ||| || ||||| |||||||||||||||||||
Sbjct: 116829926 ccttcagaggattgcgaatcatcctacaatgttataggactctgatgtcagggagttctt 116829867

                                                                             
Query: 830       ggaaaaagaggagctgccacgcgccgtgggtacccagacgttgagtggcgctggtctcct 889
                 ||||||||||||||||||| ||||| | ||||||||||| |||||||| | |||||||||
Sbjct: 116829866 ggaaaaagaggagctgccatgcgccat-ggtacccagacattgagtggtgttggtctcct 116829808

                                                                             
Query: 890       caagatgttcaacaaagccacagatgcggtcagcaaaatgaccatcaagatgaatgaatc 949
                 ||| ||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 116829807 caaaatgttcaacgaagccacagatgtggtcagcaaaatgaccataaagatgaatgaatc 116829748

                   
Query: 950       ag 951
                 ||
Sbjct: 116829747 ag 116829746



 Score =  850 bits (429), Expect = 0.0
 Identities = 752/854 (88%), Gaps = 13/854 (1%)
 Strand = Plus / Minus

                                                                             
Query: 963       gaggagaagctccaggaggtagaatgtgaggagcagcgcttacgcaaactgcatgccgtt 1022
                 |||||||||||||||||||||||||| |||| |||| ||||||  |||||||||  | ||
Sbjct: 116829461 gaggagaagctccaggaggtagaatgggaggtgcagtgcttacaaaaactgcataacctt 116829402

                                                                             
Query: 1023      gtagaaactctagtcaaccacagaaaagagctagcgctgaacacagcccagtttgcaaag 1082
                 |||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 116829401 gtagaaactctattcaaccacaggaaagagctagcgctgaacacagtccagtttgcaaag 116829342

                                                                             
Query: 1083      agtcttgccatgctcgggagctctgaggacaacacagccttgtcacgggcactctcccag 1142
                 | ||  ||||||||| |||||||||||  ||||||||| ||||||| |||||||||||| 
Sbjct: 116829341 actc--gccatgctcaggagctctgagatcaacacagcattgtcacaggcactctcccac 116829284

                                                                             
Query: 1143      ctggctgaggtggaagagaagattgagcagctccaccaggaacaggccaacaacgacttc 1202
                 |||||||||||||||| ||||||  |||||||||||||||||||||||||||| ||||||
Sbjct: 116829283 ctggctgaggtggaagcgaagatcaagcagctccaccaggaacaggccaacaatgacttc 116829224

                                                                             
Query: 1203      ttcctccttgccgagctcctaagtgactacattcgcctcctggccatagtccgcgccgcc 1262
                    |||||||  |||||||| ||||| |  |||||| |||||||||||||| | ||| | 
Sbjct: 116829223 ---ctccttgaagagctcctgagtgaatgtattcgcttcctggccatagtctgagccaca 116829167

                                                                             
Query: 1263      tttgaccagcgcatgaagacgtggcagcgctggcaggacgctcaagccacactgcagaag 1322
                 || ||||||| ||| ||||| ||||||| ||||||||| |||||||||||||||||||||
Sbjct: 116829166 ttagaccagcacatcaagacatggcagcactggcaggatgctcaagccacactgcagaag 116829107

                                                                             
Query: 1323      aagcgggaggccgaggctcggctgctgtgggccaacaagcctgacaagctgcagcaggcc 1382
                 ||| |||||||| ||  || |||||  ||||| ||||||||  ||||| ||||||||| |
Sbjct: 116829106 aagtgggaggccaagattcagctgccttgggctaacaagcccaacaagttgcagcaggtc 116829047

                                                                             
Query: 1383      aaggacgagatcatagagtgggagtctcgggtgacccagtatgaaagggactttgaaagg 1442
                 || || |||||| ||||||||||||||| ||||||||||||  |||||||||||||||||
Sbjct: 116829046 aaagatgagatcgtagagtgggagtctcaggtgacccagtaaaaaagggactttgaaagg 116828987

                                                                             
Query: 1443      atttcaactgtggtccgaaaagaagtgatacggtttgagaaagagaaatccaaggacttc 1502
                 |||||||||||||||| ||| ||||||||| ||||||||||| |||||||||| ||||||
Sbjct: 116828986 atttcaactgtggtccaaaatgaagtgatatggtttgagaaaaagaaatccaacgacttc 116828927

                                                                             
Query: 1503      gaaaaccacgtgatcaagtaccttgaaacactcctgtattcacagcagcagctggcaaag 1562
                  |||| || ||||||| |||||||||||||||||| ||||    ||||||||||||||||
Sbjct: 116828926 aaaaatcaggtgatcaggtaccttgaaacactcctatatt---tgcagcagctggcaaag 116828870

                                                                             
Query: 1563      tactgggaagccttccttcctgaggcaaaggccatctcctaacggactgaggacaccaga 1622
                 |||| ||||| ||||||||||||||||||| |||| |||||| ||||  | |||||||||
Sbjct: 116828869 tactaggaaggcttccttcctgaggcaaagcccatatcctaatggaccaaagacaccaga 116828810

                                                                             
Query: 1623      gcccacctgcctgacgctgcctttttatacactgtcctcctccacctccgctggacccca 1682
                 |||||||||||||| |||||||||||| ||||||||||||| |||||| |||||||||||
Sbjct: 116828809 gcccacctgcctgatgctgcctttttacacactgtcctccttcacctctgctggacccca 116828750

                                                                             
Query: 1683      gtgtgcatcctgcctagcctggacctcaccccttcctccctgcccccatgac-aaactgt 1741
                 ||| |||||||||||||| ||||| |||| |||||||||||| ||||||||| |||||||
Sbjct: 116828749 gtgggcatcctgcctagcttggacttcactccttcctccctg-ccccatgacaaaactgt 116828691

                                                                             
Query: 1742      ccccagccactctaacatcacttcagttagcttccatatatattttcttacctgagagaa 1801
                 ||| |||||||||||  |||||||| ||||||||||||||   |||||||||||||||||
Sbjct: 116828690 ccctagccactctaatgtcacttcacttagcttccatata---tttcttacctgagagaa 116828634

                               
Query: 1802      tagtttcttgcttt 1815
                 |||| |||||||||
Sbjct: 116828633 tagtatcttgcttt 116828620


>Sscrofa_Chr01 
||          Length = 315321322

 Score =  490 bits (247), Expect = e-135
 Identities = 264/267 (98%), Gaps = 2/267 (0%)
 Strand = Plus / Plus

                                                                             
Query: 1550      gcagctggcaaagtactgggaagccttccttcctgaggcaaaggccatctcctaacggac 1609
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118837720 gcagctggcaaagtactgggaagccttccttcctgaggcaaaggccatctcctaacggac 118837779

                                                                             
Query: 1610      tgaggacaccagagcccacctgcctgacgctgcctttttatacactgtcctcctccacct 1669
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118837780 tgaggacaccagagcccacctgcctgacgctgcctttttatacactgtcctcctccacct 118837839

                                                                             
Query: 1670      ccgctggaccccagtgtgcatcctgcctagcctggacctcaccccttcctccctgccccc 1729
                 | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 118837840 ctgctggaccccagtgtgcatcctgcctagcctggacctcaccccttcctccctg-cccc 118837898

                                                                             
Query: 1730      atga-caaactgtccccagccactctaacatcacttcagttagcttccatatatattttc 1788
                 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118837899 atgaccaaactgtccccagccactctaacatcacttcagttagcttccatatatattttc 118837958

                                            
Query: 1789      ttacctgagagaatagtttcttgcttt 1815
                 |||||||||||||||||||||||||||
Sbjct: 118837959 ttacctgagagaatagtttcttgcttt 118837985



 Score =  414 bits (209), Expect = e-113
 Identities = 209/209 (100%)
 Strand = Plus / Plus

                                                                             
Query: 1049      agagctagcgctgaacacagcccagtttgcaaagagtcttgccatgctcgggagctctga 1108
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118833259 agagctagcgctgaacacagcccagtttgcaaagagtcttgccatgctcgggagctctga 118833318

                                                                             
Query: 1109      ggacaacacagccttgtcacgggcactctcccagctggctgaggtggaagagaagattga 1168
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118833319 ggacaacacagccttgtcacgggcactctcccagctggctgaggtggaagagaagattga 118833378

                                                                             
Query: 1169      gcagctccaccaggaacaggccaacaacgacttcttcctccttgccgagctcctaagtga 1228
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118833379 gcagctccaccaggaacaggccaacaacgacttcttcctccttgccgagctcctaagtga 118833438

                                              
Query: 1229      ctacattcgcctcctggccatagtccgcg 1257
                 |||||||||||||||||||||||||||||
Sbjct: 118833439 ctacattcgcctcctggccatagtccgcg 118833467



 Score =  287 bits (145), Expect = 1e-74
 Identities = 145/145 (100%)
 Strand = Plus / Plus

                                                                             
Query: 544       agacgagcttaccaatgttcagaagtaaacagttttcagtgaaaagaagatttagtgact 603
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118828383 agacgagcttaccaatgttcagaagtaaacagttttcagtgaaaagaagatttagtgact 118828442

                                                                             
Query: 604       ttctgggtctttacgagaagctttcagagaaacactcccagaatggctttattgtccctc 663
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118828443 ttctgggtctttacgagaagctttcagagaaacactcccagaatggctttattgtccctc 118828502

                                          
Query: 664       ctccaccagagaaaagcctaatagg 688
                 |||||||||||||||||||||||||
Sbjct: 118828503 ctccaccagagaaaagcctaatagg 118828527



 Score =  285 bits (144), Expect = 4e-74
 Identities = 144/144 (100%)
 Strand = Plus / Plus

                                                                             
Query: 1257      gccgcctttgaccagcgcatgaagacgtggcagcgctggcaggacgctcaagccacactg 1316
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118835829 gccgcctttgaccagcgcatgaagacgtggcagcgctggcaggacgctcaagccacactg 118835888

                                                                             
Query: 1317      cagaagaagcgggaggccgaggctcggctgctgtgggccaacaagcctgacaagctgcag 1376
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118835889 cagaagaagcgggaggccgaggctcggctgctgtgggccaacaagcctgacaagctgcag 118835948

                                         
Query: 1377      caggccaaggacgagatcatagag 1400
                 ||||||||||||||||||||||||
Sbjct: 118835949 caggccaaggacgagatcatagag 118835972



 Score =  258 bits (130), Expect = 1e-65
 Identities = 130/130 (100%)
 Strand = Plus / Plus

                                                                             
Query: 305       agatgccacagtggagctatccttggacagcacacaaaataatcagaagaagctgccagc 364
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118820958 agatgccacagtggagctatccttggacagcacacaaaataatcagaagaagctgccagc 118821017

                                                                             
Query: 365       caaaacgctcatttctcttcctccacaggaagccacaaattcttctaagctccagccaag 424
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118821018 caaaacgctcatttctcttcctccacaggaagccacaaattcttctaagctccagccaag 118821077

                           
Query: 425       ctatgaggag 434
                 ||||||||||
Sbjct: 118821078 ctatgaggag 118821087



 Score =  230 bits (116), Expect = 2e-57
 Identities = 116/116 (100%)
 Strand = Plus / Plus

                                                                             
Query: 841       agctgccacgcgccgtgggtacccagacgttgagtggcgctggtctcctcaagatgttca 900
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118831791 agctgccacgcgccgtgggtacccagacgttgagtggcgctggtctcctcaagatgttca 118831850

                                                                         
Query: 901       acaaagccacagatgcggtcagcaaaatgaccatcaagatgaatgaatcagacatt 956
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118831851 acaaagccacagatgcggtcagcaaaatgaccatcaagatgaatgaatcagacatt 118831906



 Score =  222 bits (112), Expect = 5e-55
 Identities = 112/112 (100%)
 Strand = Plus / Plus

                                                                             
Query: 195       agtaagccccagtctccaaagagaattgcttcccttcttcccatcaacaatggctccaaa 254
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118816807 agtaagccccagtctccaaagagaattgcttcccttcttcccatcaacaatggctccaaa 118816866

                                                                     
Query: 255       gaaaacggtatccatgaggaacaagaccaagagccacaggatctctttgcag 306
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118816867 gaaaacggtatccatgaggaacaagaccaagagccacaggatctctttgcag 118816918



 Score =  186 bits (94), Expect = 3e-44
 Identities = 94/94 (100%)
 Strand = Plus / Plus

                                                                             
Query: 957       tggtttgaggagaagctccaggaggtagaatgtgaggagcagcgcttacgcaaactgcat 1016
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118832119 tggtttgaggagaagctccaggaggtagaatgtgaggagcagcgcttacgcaaactgcat 118832178

                                                   
Query: 1017      gccgttgtagaaactctagtcaaccacagaaaag 1050
                 ||||||||||||||||||||||||||||||||||
Sbjct: 118832179 gccgttgtagaaactctagtcaaccacagaaaag 118832212



 Score =  167 bits (84), Expect = 3e-38
 Identities = 84/84 (100%)
 Strand = Plus / Plus

                                                                             
Query: 686       aggaatgacgaaagtaaaagttgggaaggaagattcttcttctgcagagtttcttgaaaa 745
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118829161 aggaatgacgaaagtaaaagttgggaaggaagattcttcttctgcagagtttcttgaaaa 118829220

                                         
Query: 746       acggagggctgccctagaaaggta 769
                 ||||||||||||||||||||||||
Sbjct: 118829221 acggagggctgccctagaaaggta 118829244



 Score =  165 bits (83), Expect = 1e-37
 Identities = 83/83 (100%)
 Strand = Plus / Plus

                                                                             
Query: 1399      agtgggagtctcgggtgacccagtatgaaagggactttgaaaggatttcaactgtggtcc 1458
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118836511 agtgggagtctcgggtgacccagtatgaaagggactttgaaaggatttcaactgtggtcc 118836570

                                        
Query: 1459      gaaaagaagtgatacggtttgag 1481
                 |||||||||||||||||||||||
Sbjct: 118836571 gaaaagaagtgatacggtttgag 118836593



 Score =  155 bits (78), Expect = 1e-34
 Identities = 78/78 (100%)
 Strand = Plus / Plus

                                                                             
Query: 765       aggtaccttcagaggattgtgaatcatcctaccatggtacaggaccctgatgtcagggag 824
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118829657 aggtaccttcagaggattgtgaatcatcctaccatggtacaggaccctgatgtcagggag 118829716

                                   
Query: 825       ttcttggaaaaagaggag 842
                 ||||||||||||||||||
Sbjct: 118829717 ttcttggaaaaagaggag 118829734



 Score =  139 bits (70), Expect = 6e-30
 Identities = 70/70 (100%)
 Strand = Plus / Plus

                                                                             
Query: 433       agctagaggaagaagaacaggaagaccagtttgatttgacagtcggcataactgatcctg 492
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118822131 agctagaggaagaagaacaggaagaccagtttgatttgacagtcggcataactgatcctg 118822190

                           
Query: 493       agaaaatagg 502
                 ||||||||||
Sbjct: 118822191 agaaaatagg 118822200



 Score =  139 bits (70), Expect = 6e-30
 Identities = 73/74 (98%)
 Strand = Plus / Plus

                                                                             
Query: 1480      agaaagagaaatccaaggacttcgaaaaccacgtgatcaagtaccttgaaacactcctgt 1539
                 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 118837073 agaaagagaaatccaaggacttcaaaaaccacgtgatcaagtaccttgaaacactcctgt 118837132

                               
Query: 1540      attcacagcagcag 1553
                 ||||||||||||||
Sbjct: 118837133 attcacagcagcag 118837146



 Score = 95.6 bits (48), Expect = 8e-17
 Identities = 48/48 (100%)
 Strand = Plus / Plus

                                                                 
Query: 498       ataggggatggtatgaatgcctatgtggcctacaaagttacaacacag 545
                 ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118826430 ataggggatggtatgaatgcctatgtggcctacaaagttacaacacag 118826477


>gb|GL896470.2| Sus scrofa unplaced genomic scaffold ChrUScaf4354
          Length = 26132

 Score =  414 bits (209), Expect = e-113
 Identities = 209/209 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1049 agagctagcgctgaacacagcccagtttgcaaagagtcttgccatgctcgggagctctga 1108
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7661 agagctagcgctgaacacagcccagtttgcaaagagtcttgccatgctcgggagctctga 7602

                                                                        
Query: 1109 ggacaacacagccttgtcacgggcactctcccagctggctgaggtggaagagaagattga 1168
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7601 ggacaacacagccttgtcacgggcactctcccagctggctgaggtggaagagaagattga 7542

                                                                        
Query: 1169 gcagctccaccaggaacaggccaacaacgacttcttcctccttgccgagctcctaagtga 1228
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7541 gcagctccaccaggaacaggccaacaacgacttcttcctccttgccgagctcctaagtga 7482

                                         
Query: 1229 ctacattcgcctcctggccatagtccgcg 1257
            |||||||||||||||||||||||||||||
Sbjct: 7481 ctacattcgcctcctggccatagtccgcg 7453



 Score =  287 bits (145), Expect = 1e-74
 Identities = 145/145 (100%)
 Strand = Plus / Minus

                                                                         
Query: 544   agacgagcttaccaatgttcagaagtaaacagttttcagtgaaaagaagatttagtgact 603
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12537 agacgagcttaccaatgttcagaagtaaacagttttcagtgaaaagaagatttagtgact 12478

                                                                         
Query: 604   ttctgggtctttacgagaagctttcagagaaacactcccagaatggctttattgtccctc 663
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12477 ttctgggtctttacgagaagctttcagagaaacactcccagaatggctttattgtccctc 12418

                                      
Query: 664   ctccaccagagaaaagcctaatagg 688
             |||||||||||||||||||||||||
Sbjct: 12417 ctccaccagagaaaagcctaatagg 12393



 Score =  258 bits (130), Expect = 1e-65
 Identities = 130/130 (100%)
 Strand = Plus / Minus

                                                                         
Query: 305   agatgccacagtggagctatccttggacagcacacaaaataatcagaagaagctgccagc 364
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19424 agatgccacagtggagctatccttggacagcacacaaaataatcagaagaagctgccagc 19365

                                                                         
Query: 365   caaaacgctcatttctcttcctccacaggaagccacaaattcttctaagctccagccaag 424
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19364 caaaacgctcatttctcttcctccacaggaagccacaaattcttctaagctccagccaag 19305

                       
Query: 425   ctatgaggag 434
             ||||||||||
Sbjct: 19304 ctatgaggag 19295



 Score =  230 bits (116), Expect = 2e-57
 Identities = 116/116 (100%)
 Strand = Plus / Minus

                                                                        
Query: 841  agctgccacgcgccgtgggtacccagacgttgagtggcgctggtctcctcaagatgttca 900
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9129 agctgccacgcgccgtgggtacccagacgttgagtggcgctggtctcctcaagatgttca 9070

                                                                    
Query: 901  acaaagccacagatgcggtcagcaaaatgaccatcaagatgaatgaatcagacatt 956
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9069 acaaagccacagatgcggtcagcaaaatgaccatcaagatgaatgaatcagacatt 9014



 Score =  222 bits (112), Expect = 5e-55
 Identities = 112/112 (100%)
 Strand = Plus / Minus

                                                                         
Query: 195   agtaagccccagtctccaaagagaattgcttcccttcttcccatcaacaatggctccaaa 254
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23704 agtaagccccagtctccaaagagaattgcttcccttcttcccatcaacaatggctccaaa 23645

                                                                 
Query: 255   gaaaacggtatccatgaggaacaagaccaagagccacaggatctctttgcag 306
             ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23644 gaaaacggtatccatgaggaacaagaccaagagccacaggatctctttgcag 23593



 Score =  186 bits (94), Expect = 3e-44
 Identities = 94/94 (100%)
 Strand = Plus / Minus

                                                                        
Query: 957  tggtttgaggagaagctccaggaggtagaatgtgaggagcagcgcttacgcaaactgcat 1016
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8801 tggtttgaggagaagctccaggaggtagaatgtgaggagcagcgcttacgcaaactgcat 8742

                                              
Query: 1017 gccgttgtagaaactctagtcaaccacagaaaag 1050
            ||||||||||||||||||||||||||||||||||
Sbjct: 8741 gccgttgtagaaactctagtcaaccacagaaaag 8708



 Score =  167 bits (84), Expect = 3e-38
 Identities = 84/84 (100%)
 Strand = Plus / Minus

                                                                         
Query: 686   aggaatgacgaaagtaaaagttgggaaggaagattcttcttctgcagagtttcttgaaaa 745
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11759 aggaatgacgaaagtaaaagttgggaaggaagattcttcttctgcagagtttcttgaaaa 11700

                                     
Query: 746   acggagggctgccctagaaaggta 769
             ||||||||||||||||||||||||
Sbjct: 11699 acggagggctgccctagaaaggta 11676



 Score =  155 bits (78), Expect = 1e-34
 Identities = 78/78 (100%)
 Strand = Plus / Minus

                                                                         
Query: 765   aggtaccttcagaggattgtgaatcatcctaccatggtacaggaccctgatgtcagggag 824
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11263 aggtaccttcagaggattgtgaatcatcctaccatggtacaggaccctgatgtcagggag 11204

                               
Query: 825   ttcttggaaaaagaggag 842
             ||||||||||||||||||
Sbjct: 11203 ttcttggaaaaagaggag 11186



 Score =  139 bits (70), Expect = 6e-30
 Identities = 70/70 (100%)
 Strand = Plus / Minus

                                                                         
Query: 433   agctagaggaagaagaacaggaagaccagtttgatttgacagtcggcataactgatcctg 492
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18251 agctagaggaagaagaacaggaagaccagtttgatttgacagtcggcataactgatcctg 18192

                       
Query: 493   agaaaatagg 502
             ||||||||||
Sbjct: 18191 agaaaatagg 18182



 Score = 95.6 bits (48), Expect = 8e-17
 Identities = 48/48 (100%)
 Strand = Plus / Minus

                                                             
Query: 498   ataggggatggtatgaatgcctatgtggcctacaaagttacaacacag 545
             ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14339 ataggggatggtatgaatgcctatgtggcctacaaagttacaacacag 14292


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 58,383,808
Number of extensions: 471
Number of successful extensions: 471
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 463
Number of HSP's successfully gapped: 27
Length of query: 1830
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1808
Effective length of database: 2,808,408,574
Effective search space: 5077602701792
Effective search space used: 5077602701792
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)