Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013968
(1034 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_855541.1| PREDICTED: similar to Ribonuclease P protein su... 365 e-101
>ref|XP_855541.1| PREDICTED: similar to Ribonuclease P protein subunit p29 (hPOP4)
[Canis familiaris].
Length = 307
Score = 365 bits (938), Expect = e-101
Identities = 192/241 (79%), Positives = 203/241 (84%)
Frame = +3
Query: 156 EGGKEGATLKETSEKRTGSGPRMKSVIYNAFSQKEAKEFDVQHTGAQRAEAFVRAFLKRS 335
+G GA+ S SG R + Y AFSQKEAKE +VQ GAQ+AEAFVRAFLKRS
Sbjct: 67 QGFPAGASGAGVSISDGVSGARWGAT-YRAFSQKEAKELEVQLPGAQQAEAFVRAFLKRS 125
Query: 336 MPHMSQQVREDLLQRKAVVLEYFTHRXXXXXXXXSRGLSAKQRRELRLFDIKPEQQRYSL 515
MP MSQQ ED LQRKAVVLEYFT R S+GLSA+QRREL LFDI EQQRY+L
Sbjct: 126 MPRMSQQACEDQLQRKAVVLEYFTRRKRKEKRKRSKGLSARQRRELHLFDITAEQQRYNL 185
Query: 516 FLPLHELWKQYIRDLCNGLKPDTQPQMIQAKLLKADLHGAIVSVTKSKCPSYVGVTGILL 695
FLPLHELWKQYIRDLC GLKPDTQPQMIQAKLLKADLHGA++SVTKSKCPSYVGVTGILL
Sbjct: 186 FLPLHELWKQYIRDLCGGLKPDTQPQMIQAKLLKADLHGALISVTKSKCPSYVGVTGILL 245
Query: 696 QETKHVFKIITKEDRLKVIPKLNCVFTVEIDGFISYIYGSKFQLRSSERSAKKFKAKGTI 875
QETKHVFKIITKEDRLKVIPKLNCVFTVEIDGFISYIYGSKFQLRSSERSAKKFKAKGT+
Sbjct: 246 QETKHVFKIITKEDRLKVIPKLNCVFTVEIDGFISYIYGSKFQLRSSERSAKKFKAKGTV 305
Query: 876 D 878
D
Sbjct: 306 D 306
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,503,284
Number of extensions: 972454
Number of successful extensions: 4227
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4209
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 240
Effective length of database: 15,407,560
Effective search space: 3697814400
Effective search space used: 3697814400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013968
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013968
(1034 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001106753.1| ribonuclease P protein subunit p29 isoform 1... 396 e-110
Alignment gi|NP_001029942.1| ribonuclease P protein subunit p29 isoform 2... 332 3e-91
>ref|NP_001106753.1| ribonuclease P protein subunit p29 isoform 1 [Bos taurus].
Length = 220
Score = 396 bits (1017), Expect = e-110
Identities = 201/219 (91%), Positives = 205/219 (93%)
Frame = +3
Query: 222 MKSVIYNAFSQKEAKEFDVQHTGAQRAEAFVRAFLKRSMPHMSQQVREDLLQRKAVVLEY 401
M SV+Y+AFSQKEAKE DVQH+GAQRAEAFVRAFLKRSMP MSQQ ED LQRKAVVLEY
Sbjct: 1 MTSVVYHAFSQKEAKELDVQHSGAQRAEAFVRAFLKRSMPRMSQQALEDHLQRKAVVLEY 60
Query: 402 FTHRXXXXXXXXSRGLSAKQRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCNGLKPD 581
FTHR S+GLSAKQRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCNGLKPD
Sbjct: 61 FTHRKQKEKRKKSKGLSAKQRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCNGLKPD 120
Query: 582 TQPQMIQAKLLKADLHGAIVSVTKSKCPSYVGVTGILLQETKHVFKIITKEDRLKVIPKL 761
TQPQMIQAKLLKADLHGAIVSVTKSKCPSYVGVTGILLQETKHVFKIITKEDRLKVIPKL
Sbjct: 121 TQPQMIQAKLLKADLHGAIVSVTKSKCPSYVGVTGILLQETKHVFKIITKEDRLKVIPKL 180
Query: 762 NCVFTVEIDGFISYIYGSKFQLRSSERSAKKFKAKGTID 878
NCVFTVEIDGFISYIYGSKFQLRSSERSAKKFKAKGTID
Sbjct: 181 NCVFTVEIDGFISYIYGSKFQLRSSERSAKKFKAKGTID 219
>ref|NP_001029942.1| ribonuclease P protein subunit p29 isoform 2 [Bos taurus].
Length = 182
Score = 332 bits (851), Expect = 3e-91
Identities = 168/181 (92%), Positives = 169/181 (93%)
Frame = +3
Query: 336 MPHMSQQVREDLLQRKAVVLEYFTHRXXXXXXXXSRGLSAKQRRELRLFDIKPEQQRYSL 515
MP MSQQ ED LQRKAVVLEYFTHR S+GLSAKQRRELRLFDIKPEQQRYSL
Sbjct: 1 MPRMSQQALEDHLQRKAVVLEYFTHRKQKEKRKKSKGLSAKQRRELRLFDIKPEQQRYSL 60
Query: 516 FLPLHELWKQYIRDLCNGLKPDTQPQMIQAKLLKADLHGAIVSVTKSKCPSYVGVTGILL 695
FLPLHELWKQYIRDLCNGLKPDTQPQMIQAKLLKADLHGAIVSVTKSKCPSYVGVTGILL
Sbjct: 61 FLPLHELWKQYIRDLCNGLKPDTQPQMIQAKLLKADLHGAIVSVTKSKCPSYVGVTGILL 120
Query: 696 QETKHVFKIITKEDRLKVIPKLNCVFTVEIDGFISYIYGSKFQLRSSERSAKKFKAKGTI 875
QETKHVFKIITKEDRLKVIPKLNCVFTVEIDGFISYIYGSKFQLRSSERSAKKFKAKGTI
Sbjct: 121 QETKHVFKIITKEDRLKVIPKLNCVFTVEIDGFISYIYGSKFQLRSSERSAKKFKAKGTI 180
Query: 876 D 878
D
Sbjct: 181 D 181
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,851,531
Number of extensions: 945568
Number of successful extensions: 3959
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3926
Number of HSP's successfully gapped: 2
Length of query: 344
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 241
Effective length of database: 14,273,310
Effective search space: 3439867710
Effective search space used: 3439867710
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013968
(1034 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127052.1| PREDICTED: ribonuclease P protein subunit p2... 416 e-116
>ref|XP_003127052.1| PREDICTED: ribonuclease P protein subunit p29-like [Sus scrofa].
Length = 220
Score = 416 bits (1068), Expect = e-116
Identities = 211/219 (96%), Positives = 211/219 (96%)
Frame = +3
Query: 222 MKSVIYNAFSQKEAKEFDVQHTGAQRAEAFVRAFLKRSMPHMSQQVREDLLQRKAVVLEY 401
MKSVIYNAFSQKEAKEFDVQHTGAQRAEAFVRAFLKRSMPHMSQQVREDLLQRKAVVLEY
Sbjct: 1 MKSVIYNAFSQKEAKEFDVQHTGAQRAEAFVRAFLKRSMPHMSQQVREDLLQRKAVVLEY 60
Query: 402 FTHRXXXXXXXXSRGLSAKQRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCNGLKPD 581
FTHR SRGLSAKQRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCNGLKPD
Sbjct: 61 FTHRKQKEKKKKSRGLSAKQRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCNGLKPD 120
Query: 582 TQPQMIQAKLLKADLHGAIVSVTKSKCPSYVGVTGILLQETKHVFKIITKEDRLKVIPKL 761
TQPQMIQAKLLKADLHGAIVSVTKSKCPSYVGVTGILLQETKHVFKIITKEDRLKVIPKL
Sbjct: 121 TQPQMIQAKLLKADLHGAIVSVTKSKCPSYVGVTGILLQETKHVFKIITKEDRLKVIPKL 180
Query: 762 NCVFTVEIDGFISYIYGSKFQLRSSERSAKKFKAKGTID 878
NCVFTVEIDGFISYIYGSKFQLRSSERSAKKFKAKGTID
Sbjct: 181 NCVFTVEIDGFISYIYGSKFQLRSSERSAKKFKAKGTID 219
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,690,416
Number of extensions: 602547
Number of successful extensions: 2623
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2608
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 244
Effective length of database: 8,854,232
Effective search space: 2160432608
Effective search space used: 2160432608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013968
(1034 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079666.1| ribonuclease P protein subunit p29 [Mus musculu... 362 e-100
>ref|NP_079666.1| ribonuclease P protein subunit p29 [Mus musculus].
Length = 221
Score = 362 bits (929), Expect = e-100
Identities = 182/220 (82%), Positives = 199/220 (90%), Gaps = 1/220 (0%)
Frame = +3
Query: 222 MKSVIYNAFSQKEAKEFDVQHTGAQRAEAFVRAFLKRSMPHMSQQVREDLLQRKAVVLEY 401
MK+ IY+AFS KEAK+ DVQ G+QRAEAFVRAFLK+S+PHMSQ+ E LQRKAV+LEY
Sbjct: 1 MKAAIYHAFSHKEAKDHDVQELGSQRAEAFVRAFLKQSIPHMSQEDCESHLQRKAVILEY 60
Query: 402 FTH-RXXXXXXXXSRGLSAKQRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCNGLKP 578
FT + S+GLSAKQRR++RLFDIKPEQQRYSLFLPLHELWKQYIRDLCNGLKP
Sbjct: 61 FTRLKPRPRPKKKSKGLSAKQRRDMRLFDIKPEQQRYSLFLPLHELWKQYIRDLCNGLKP 120
Query: 579 DTQPQMIQAKLLKADLHGAIVSVTKSKCPSYVGVTGILLQETKHVFKIITKEDRLKVIPK 758
DTQPQMIQAKLLKADLHGAI+SVTKSKCPSYVGVTGILLQETKHVFKIIT+ED LKVIPK
Sbjct: 121 DTQPQMIQAKLLKADLHGAIISVTKSKCPSYVGVTGILLQETKHVFKIITREDHLKVIPK 180
Query: 759 LNCVFTVEIDGFISYIYGSKFQLRSSERSAKKFKAKGTID 878
LNCVFT+EID FISYIYGSKFQLR+SERSAKKFKAKG+ID
Sbjct: 181 LNCVFTIEIDDFISYIYGSKFQLRASERSAKKFKAKGSID 220
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,216,325
Number of extensions: 815878
Number of successful extensions: 3274
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3257
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 242
Effective length of database: 12,553,887
Effective search space: 3038040654
Effective search space used: 3038040654
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013968
(1034 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006618.1| ribonuclease P protein subunit p29 [Homo sapien... 375 e-104
>ref|NP_006618.1| ribonuclease P protein subunit p29 [Homo sapiens].
Length = 220
Score = 375 bits (962), Expect = e-104
Identities = 189/219 (86%), Positives = 199/219 (90%)
Frame = +3
Query: 222 MKSVIYNAFSQKEAKEFDVQHTGAQRAEAFVRAFLKRSMPHMSQQVREDLLQRKAVVLEY 401
MKSVIY+A SQKEA + DVQ +GAQRAEAFVRAFLKRS P MS Q RED LQRKAVVLEY
Sbjct: 1 MKSVIYHALSQKEANDSDVQPSGAQRAEAFVRAFLKRSTPRMSPQAREDQLQRKAVVLEY 60
Query: 402 FTHRXXXXXXXXSRGLSAKQRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCNGLKPD 581
FT ++GLSA+QRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDLC+GLKPD
Sbjct: 61 FTRHKRKEKKKKAKGLSARQRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCSGLKPD 120
Query: 582 TQPQMIQAKLLKADLHGAIVSVTKSKCPSYVGVTGILLQETKHVFKIITKEDRLKVIPKL 761
TQPQMIQAKLLKADLHGAI+SVTKSKCPSYVG+TGILLQETKH+FKIITKEDRLKVIPKL
Sbjct: 121 TQPQMIQAKLLKADLHGAIISVTKSKCPSYVGITGILLQETKHIFKIITKEDRLKVIPKL 180
Query: 762 NCVFTVEIDGFISYIYGSKFQLRSSERSAKKFKAKGTID 878
NCVFTVE DGFISYIYGSKFQLRSSERSAKKFKAKGTID
Sbjct: 181 NCVFTVETDGFISYIYGSKFQLRSSERSAKKFKAKGTID 219
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,823,705
Number of extensions: 965102
Number of successful extensions: 3869
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3844
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 241
Effective length of database: 14,901,872
Effective search space: 3591351152
Effective search space used: 3591351152
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013968
(1034 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 549 e-153
>Sscrofa_Chr06
|| Length = 157765593
Score = 549 bits (277), Expect = e-153
Identities = 286/289 (98%)
Strand = Plus / Plus
Query: 746 agtcatccccaagctgaactgtgtgttcactgtggagatcgacggctttatttcctacat 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35037076 agtcatccccaagctgaactgtgtgttcactgtggagatcgacggctttatttcctacat 35037135
Query: 806 ttatgggagcaaattccagctgcggtcgagcgagcggtctgcgaagaagttcaaagccaa 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35037136 ttatgggagcaaattccagctgcggtcgagcgagcggtctgcgaagaagttcaaagccaa 35037195
Query: 866 gggaacaattgacctgtgagctcttgctgcctaaggggattgtttatggcagctgaaaac 925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35037196 gggaacaattgacctgtgagctcttgctgcctaaggggattgtttatggcagctgaaaac 35037255
Query: 926 tggaaaccctaaataccctcctttctgggaagaggtggtcaggccagttctggttctaga 985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35037256 tggaaaccctaaataccctcctttctgggaagaggtggtcaggccagttctggttctaga 35037315
Query: 986 cacactcagccggtttcagtcagagctaaggacatttcatcatctggcc 1034
| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35037316 ccacctcagccggtttcagtcagagctaaggacatttcatcatctggcc 35037364
Score = 416 bits (210), Expect = e-113
Identities = 225/230 (97%)
Strand = Plus / Plus
Query: 1 caggggcgccaacctcgagtttggggcagcgactgcagctgaaagtaggagcgtgttggt 60
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 35027641 caggggcgccaacctcgagtttggggcagcgactccagctaaaagtaggagcgtgttggt 35027700
Query: 61 attaacgtagcttaccgcgcgacttcagacacaggaaacctctccgccacaaactttggc 120
|| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35027701 atcaatgtagcataccgcgcgacttcagacacaggaaacctctccgccacaaactttggc 35027760
Query: 121 gagaggcttggtagtcgaggctgctgaagaaagtagagggaggtaaagagggagcgacgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35027761 gagaggcttggtagtcgaggctgctgaagaaagtagagggaggtaaagagggagcgacgc 35027820
Query: 181 tgaaggagacgtcagaaaagcgcaccggaagcggtccgagaatgaagagt 230
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35027821 tgaaggagacgtcagaaaagcgcaccggaagcggtccgagaatgaagagt 35027870
Score = 329 bits (166), Expect = 2e-87
Identities = 209/230 (90%)
Strand = Plus / Plus
Query: 279 cagcacacgggcgcccagcgggccgaggccttcgtgagggccttcctgaaacggagcatg 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35032037 cagcacacgggcgcccagcgggccgaggccttcgtgagggccttcctgaaacggagcatg 35032096
Query: 339 ccccacatgagccagcaagtccgggaggacctcctgcaacgcaaggccgtcgttctggag 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35032097 ccccacatgagccagcaagtccgggaggacctcctgcaacgcaaggccgtcgttctggag 35032156
Query: 399 tacttcactcaccggaagcnnnnnnnnnnnnnnnnnnnntccagaggcctctctgccaag 458
||||||||||||||||||| |||||||||||||||||||||
Sbjct: 35032157 tacttcactcaccggaagcaaaaggaaaagaaaaagaaatccagaggcctctctgccaag 35032216
Query: 459 cagaggagggagctgcggctctttgacattaaaccagagcagcagaggta 508
|||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 35032217 cagaggagggagctgcggctctttgacattaaaccagaacagcagaggta 35032266
Score = 208 bits (105), Expect = 4e-51
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 643 cagttacaaaatccaaatgcccctcctatgtgggggttacaggcatccttctacaggaaa 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35036029 cagttacaaaatccaaatgcccctcctatgtgggggttacaggcatccttctacaggaaa 35036088
Query: 703 caaagcacgttttcaaaattatcaccaaagaagaccgcctgaaag 747
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35036089 caaagcacgttttcaaaattatcaccaaagaagaccgcctgaaag 35036133
Score = 161 bits (81), Expect = 9e-37
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 504 aggtacagtctttttctccctctgcacgaactctggaaacagtacattcgggatctgtgc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35033541 aggtacagtctttttctccctctgcacgaactctggaaacagtacattcgggatctgtgc 35033600
Query: 564 aatggactcaaaccagacacg 584
|||||||||||||||||||||
Sbjct: 35033601 aatggactcaaaccagacacg 35033621
Score = 123 bits (62), Expect = 2e-25
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 584 gcagccgcagatgattcaggctaaacttctgaaggcagatcttcacggcgctattgtttc 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35033800 gcagccgcagatgattcaggctaaacttctgaaggcagatcttcacggcgctattgtttc 35033859
Query: 644 ag 645
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Sbjct: 35033860 ag 35033861
Score = 105 bits (53), Expect = 5e-20
Identities = 53/53 (100%)
Strand = Plus / Plus
Query: 229 gtgtgatctacaatgccttttctcagaaagaggcgaaagagttcgatgttcag 281
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Sbjct: 35030098 gtgtgatctacaatgccttttctcagaaagaggcgaaagagttcgatgttcag 35030150
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,205,493
Number of extensions: 136
Number of successful extensions: 136
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 8
Length of query: 1034
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1013
Effective length of database: 2,808,413,156
Effective search space: 2844922527028
Effective search space used: 2844922527028
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)