Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013972
(945 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029854.1| charged multivesicular body protein 5 [Bos t... 321 5e-88
>ref|NP_001029854.1| charged multivesicular body protein 5 [Bos taurus].
Length = 219
Score = 321 bits (823), Expect = 5e-88
Identities = 173/219 (78%), Positives = 173/219 (78%)
Frame = +1
Query: 88 MNRFFGXXXXXXXXXSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKNM 267
MNRFFG SLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKNM
Sbjct: 1 MNRFFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKNM 60
Query: 268 VKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAY 447
VKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAY
Sbjct: 61 VKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAY 120
Query: 448 KQVKXXXXXXXXXXXXXMMEDANEIQEALSRSYGTPXXXXXXXXXXXXXXXXXXXXXXXS 627
KQVK MMEDANEIQEALSRSYGTP S
Sbjct: 121 KQVKIDQIEDLQDQLEDMMEDANEIQEALSRSYGTPELDEDDLEAELDALGDELLADEDS 180
Query: 628 SYLDEAAAAPAIPEGVPTDTKNKDGVLVDEFGLPQIPAS 744
SYLDEAAAAPAIPEGVPTDTKNKDGVLVDEFGLP IPAS
Sbjct: 181 SYLDEAAAAPAIPEGVPTDTKNKDGVLVDEFGLPLIPAS 219
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 29,102,125
Number of extensions: 668537
Number of successful extensions: 1974
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1973
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 213
Effective length of database: 14,306,398
Effective search space: 3047262774
Effective search space used: 3047262774
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013972
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013972
(945 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531972.2| PREDICTED: similar to chromatin modifying prote... 222 3e-58
Alignment gi|XP_865518.1| PREDICTED: similar to chromatin modifying prote... 117 2e-26
Alignment gi|XP_865500.1| PREDICTED: similar to chromatin modifying prote... 97 3e-20
Alignment gi|XP_850118.1| PREDICTED: similar to chromatin modifying prote... 68 1e-11
>ref|XP_531972.2| PREDICTED: similar to chromatin modifying protein 5 isoform 1
[Canis familiaris].
Length = 172
Score = 222 bits (566), Expect = 3e-58
Identities = 115/124 (92%), Positives = 115/124 (92%)
Frame = +1
Query: 88 MNRFFGXXXXXXXXXSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKNM 267
MNRFFG SLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKNM
Sbjct: 1 MNRFFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKNM 60
Query: 268 VKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAY 447
VKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAY
Sbjct: 61 VKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAY 120
Query: 448 KQVK 459
KQVK
Sbjct: 121 KQVK 124
Score = 83.2 bits (204), Expect = 3e-16
Identities = 37/45 (82%), Positives = 40/45 (88%)
Frame = +2
Query: 638 MKQQLHLQFQKVFPLTQRIRMESWWMNLDCHRSLLRRHAPFKYIM 772
++Q LHLQFQK FPLTQRIRMESWWMNLDCHRSLL R A FKYI+
Sbjct: 128 IEQHLHLQFQKAFPLTQRIRMESWWMNLDCHRSLLHRLASFKYIV 172
>ref|XP_865518.1| PREDICTED: similar to chromatin modifying protein 5 isoform 4
[Canis familiaris].
Length = 121
Score = 117 bits (293), Expect = 2e-26
Identities = 52/64 (81%), Positives = 56/64 (87%)
Frame = +2
Query: 581 RNWMH*VMNFWLMKTVLIWMKQQLHLQFQKVFPLTQRIRMESWWMNLDCHRSLLRRHAPF 760
++WMH VM+FWL KTVL WMKQ LHLQFQK FPLTQRIRMESWWMNLDCHRSLL R A F
Sbjct: 58 KSWMHWVMSFWLTKTVLTWMKQHLHLQFQKAFPLTQRIRMESWWMNLDCHRSLLHRLASF 117
Query: 761 KYIM 772
KYI+
Sbjct: 118 KYIV 121
Score = 97.1 bits (240), Expect = 2e-20
Identities = 49/59 (83%), Positives = 50/59 (84%)
Frame = +1
Query: 88 MNRFFGXXXXXXXXXSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKN 264
MNRFFG SLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAK+
Sbjct: 1 MNRFFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKS 59
>ref|XP_865500.1| PREDICTED: similar to chromatin modifying protein 5 isoform 3
[Canis familiaris].
Length = 60
Score = 96.7 bits (239), Expect = 3e-20
Identities = 49/58 (84%), Positives = 49/58 (84%)
Frame = +1
Query: 88 MNRFFGXXXXXXXXXSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAK 261
MNRFFG SLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAK
Sbjct: 1 MNRFFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAK 58
>ref|XP_850118.1| PREDICTED: similar to chromatin modifying protein 5, partial [Canis
familiaris].
Length = 121
Score = 68.2 bits (165), Expect = 1e-11
Identities = 30/74 (40%), Positives = 47/74 (63%)
Frame = +1
Query: 88 MNRFFGXXXXXXXXXSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKNM 267
M + FG S+ D ++ R E++D+KI +LD EL +YK+QI+K R GP++
Sbjct: 26 MKKIFGAKKDKGPPPSIQDATERINKRGETVDEKIKKLDEELARYKEQIRKTRPGPSQEA 85
Query: 268 VKQKALRVLKQKRM 309
+K +A+R+LK KRM
Sbjct: 86 IKARAIRLLKHKRM 99
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 30,390,931
Number of extensions: 681857
Number of successful extensions: 2090
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2089
Number of HSP's successfully gapped: 6
Length of query: 315
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 212
Effective length of database: 15,440,896
Effective search space: 3273469952
Effective search space used: 3273469952
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013972
(945 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003130735.2| PREDICTED: charged multivesicular body prote... 253 1e-67
>ref|XP_003130735.2| PREDICTED: charged multivesicular body protein 5-like [Sus scrofa].
Length = 179
Score = 253 bits (645), Expect = 1e-67
Identities = 133/156 (85%), Positives = 133/156 (85%)
Frame = +1
Query: 88 MNRFFGXXXXXXXXXSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKNM 267
MNRFFG SLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKNM
Sbjct: 1 MNRFFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKNM 60
Query: 268 VKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAY 447
VKQKALRV KQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAY
Sbjct: 61 VKQKALRVFKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAY 120
Query: 448 KQVKXXXXXXXXXXXXXMMEDANEIQEALSRSYGTP 555
KQVK MMEDANEIQEALSRSYGTP
Sbjct: 121 KQVKIDQIEDLQDQLEDMMEDANEIQEALSRSYGTP 156
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 18,693,487
Number of extensions: 426846
Number of successful extensions: 1208
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1208
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 216
Effective length of database: 8,879,129
Effective search space: 1917891864
Effective search space used: 1917891864
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013972
(945 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_084090.1| charged multivesicular body protein 5 [Mus musc... 320 1e-87
>ref|NP_084090.1| charged multivesicular body protein 5 [Mus musculus].
Length = 219
Score = 320 bits (820), Expect = 1e-87
Identities = 171/219 (78%), Positives = 173/219 (78%)
Frame = +1
Query: 88 MNRFFGXXXXXXXXXSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKNM 267
MNRFFG SLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKNM
Sbjct: 1 MNRFFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKNM 60
Query: 268 VKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAY 447
VKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAY
Sbjct: 61 VKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAY 120
Query: 448 KQVKXXXXXXXXXXXXXMMEDANEIQEALSRSYGTPXXXXXXXXXXXXXXXXXXXXXXXS 627
K+VK MMEDANEIQEAL RSYGTP S
Sbjct: 121 KEVKIDQIEDLQDQLEDMMEDANEIQEALGRSYGTPELDEDDLEAELDALGDELLADEDS 180
Query: 628 SYLDEAAAAPAIPEGVPTDTKNKDGVLVDEFGLPQIPAS 744
SYLDEAA+APAIPEGVPTDTKNKDGVLVDEFGLPQIPAS
Sbjct: 181 SYLDEAASAPAIPEGVPTDTKNKDGVLVDEFGLPQIPAS 219
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 25,586,751
Number of extensions: 585080
Number of successful extensions: 1831
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1829
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 214
Effective length of database: 12,583,923
Effective search space: 2692959522
Effective search space used: 2692959522
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013972
(945 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057494.3| charged multivesicular body protein 5 isoform 1... 320 9e-88
Alignment gi|NP_001182465.1| charged multivesicular body protein 5 isofor... 252 4e-67
>ref|NP_057494.3| charged multivesicular body protein 5 isoform 1 [Homo sapiens].
Length = 219
Score = 320 bits (821), Expect = 9e-88
Identities = 172/219 (78%), Positives = 173/219 (78%)
Frame = +1
Query: 88 MNRFFGXXXXXXXXXSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKNM 267
MNR FG SLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKNM
Sbjct: 1 MNRLFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKNM 60
Query: 268 VKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAY 447
VKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAY
Sbjct: 61 VKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAY 120
Query: 448 KQVKXXXXXXXXXXXXXMMEDANEIQEALSRSYGTPXXXXXXXXXXXXXXXXXXXXXXXS 627
KQVK MMEDANEIQEALSRSYGTP S
Sbjct: 121 KQVKIDQIEDLQDQLEDMMEDANEIQEALSRSYGTPELDEDDLEAELDALGDELLADEDS 180
Query: 628 SYLDEAAAAPAIPEGVPTDTKNKDGVLVDEFGLPQIPAS 744
SYLDEAA+APAIPEGVPTDTKNKDGVLVDEFGLPQIPAS
Sbjct: 181 SYLDEAASAPAIPEGVPTDTKNKDGVLVDEFGLPQIPAS 219
>ref|NP_001182465.1| charged multivesicular body protein 5 isoform 2 [Homo sapiens].
Length = 171
Score = 252 bits (643), Expect = 4e-67
Identities = 133/156 (85%), Positives = 133/156 (85%)
Frame = +1
Query: 88 MNRFFGXXXXXXXXXSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKNM 267
MNR FG SLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKNM
Sbjct: 1 MNRLFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKNM 60
Query: 268 VKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAY 447
VKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAY
Sbjct: 61 VKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAY 120
Query: 448 KQVKXXXXXXXXXXXXXMMEDANEIQEALSRSYGTP 555
KQVK MMEDANEIQEALSRSYGTP
Sbjct: 121 KQVKIDQIEDLQDQLEDMMEDANEIQEALSRSYGTP 156
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 29,853,974
Number of extensions: 678841
Number of successful extensions: 2017
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2014
Number of HSP's successfully gapped: 2
Length of query: 315
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 213
Effective length of database: 14,934,836
Effective search space: 3181120068
Effective search space used: 3181120068
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013972
(945 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr10 428 e-117
Sscrofa_Chr12 410 e-112
>Sscrofa_Chr10
|| Length = 79102373
Score = 428 bits (216), Expect = e-117
Identities = 238/248 (95%)
Strand = Plus / Minus
Query: 695 aggatggagtcctggtggatgaatttggattgccacagatccctgcttcgtagacatgca 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37441777 aggatggagtcctggtggatgaatttggattgccacagatccctgcttcgtagacatgca 37441718
Query: 755 ccattcaagtatatcatgtaaaataaatacatattctgggatatttatctttccaaattt 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37441717 ccattcaagtatatcatgtaaaataaatacatattctgggatatttatctttccaaattt 37441658
Query: 815 gccataacagtttcagattcctttattctctttggaggaaaagttaattacattgctttt 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37441657 gccataacagtttcagattcctttattctctttggaggaaaagttaattacattgctttt 37441598
Query: 875 gnnnnnnnnctgttaagagactcattgcttggagaaggctttcctcatactaaatttgta 934
| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 37441597 gttttttttctgttaagagactcattgcttggagaaggctttcttcatactaaatttgta 37441538
Query: 935 tccctttt 942
| ||||||
Sbjct: 37441537 ttcctttt 37441530
Score = 315 bits (159), Expect = 2e-83
Identities = 159/159 (100%)
Strand = Plus / Minus
Query: 2 ccggaagtcaagtcggaggcggaggtgactctgcttccgtttctggttttgctccagtgt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37484352 ccggaagtcaagtcggaggcggaggtgactctgcttccgtttctggttttgctccagtgt 37484293
Query: 62 ttaggttctctttgcggctgttcaagatgaaccgattcttcgggaaagcgaaacccaagg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37484292 ttaggttctctttgcggctgttcaagatgaaccgattcttcgggaaagcgaaacccaagg 37484233
Query: 122 ctccgccgcccagcttgaccgactgcattggcacggtgg 160
|||||||||||||||||||||||||||||||||||||||
Sbjct: 37484232 ctccgccgcccagcttgaccgactgcattggcacggtgg 37484194
Score = 220 bits (111), Expect = 1e-54
Identities = 111/111 (100%)
Strand = Plus / Minus
Query: 473 aggatctacaggaccagctagaagatatgatggaagatgcaaatgaaatccaagaagcac 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37475942 aggatctacaggaccagctagaagatatgatggaagatgcaaatgaaatccaagaagcac 37475883
Query: 533 tgagtcgtagttatggcacgccagaattagacgaagatgacctagaagcgg 583
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37475882 tgagtcgtagttatggcacgccagaattagacgaagatgacctagaagcgg 37475832
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Minus
Query: 156 ggtggacagcagggcagaatccattgacaagaagatttctcgcctggatgctgagctagt 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37483393 ggtggacagcagggcagaatccattgacaagaagatttctcgcctggatgctgagctagt 37483334
Query: 216 gaagtataaggatcagatcaaaaagatgagagagggtcctgcaaag 261
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37483333 gaagtataaggatcagatcaaaaagatgagagagggtcctgcaaag 37483288
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Minus
Query: 309 gtatgagcagcagcgggacaatctcgcccagcagtcatttaacatggaacaagccaatta 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37481403 gtatgagcagcagcgggacaatctcgcccagcagtcatttaacatggaacaagccaatta 37481344
Query: 369 caccatccagtcattgaaggacaccaagaccacggt 404
||||||||||||||||||||||||||||||||||||
Sbjct: 37481343 caccatccagtcattgaaggacaccaagaccacggt 37481308
Score = 147 bits (74), Expect = 1e-32
Identities = 74/74 (100%)
Strand = Plus / Minus
Query: 402 ggtcgacgctatgaaactgggagtaaaggagatgaagaaagcatataagcaagtgaaaat 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37481173 ggtcgacgctatgaaactgggagtaaaggagatgaagaaagcatataagcaagtgaaaat 37481114
Query: 462 cgaccagattgagg 475
||||||||||||||
Sbjct: 37481113 cgaccagattgagg 37481100
Score = 95.6 bits (48), Expect = 4e-17
Identities = 51/52 (98%)
Strand = Plus / Minus
Query: 260 agaatatggtcaagcagaaagccttgcgggttttaaagcaaaagcggatgta 311
|||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 37481923 agaatatggtcaagcagaaagccttgcgggtttttaagcaaaagcggatgta 37481872
>Sscrofa_Chr12
|| Length = 63588571
Score = 410 bits (207), Expect = e-112
Identities = 393/457 (85%), Gaps = 16/457 (3%)
Strand = Plus / Minus
Query: 341 agtcatttaacatggaacaagccaattacaccatccagtcattgaaggacaccaagacca 400
||||||| ||| ||||| ||||| ||||||||||| |||| |||| ||||||||||||
Sbjct: 35737226 agtcattcaacgtggaatcagccagttacaccatccggtcactgaaagacaccaagaccc 35737167
Query: 401 cggtcgacgctatgaaactgggagtaaaggagatgaagaaagcatata--agcaagtgaa 458
|||| || ||||||||| |||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 35737166 cggttgatgctatgaaagtgggagtaaatgagatgaagaaagcatatacaagcaagtgaa 35737107
Query: 459 aatcgaccagattgaggatctacaggaccagctagaagatatgatggaagatgcaaatga 518
|| |||||||||||||||||| | ||||||||| | |||||||||||||| |||||||
Sbjct: 35737106 aagtgaccagattgaggatctagaagaccagctaaagaatatgatggaagatacaaatga 35737047
Query: 519 aatccaagaagcactgagtcgtagttatggcacgccagaattagacgaagatgacctaga 578
|||||||||||||| |||| |||||||||||| ||||||||||| ||||||||||||||
Sbjct: 35737046 aatccaagaagcacggagttgtagttatggcaacccagaattagatgaagatgacctaga 35736987
Query: 579 agcggaattggatgcactaggtgatgaacttctggctgatgaagacagttcttatttgga 638
||| || ||||||||||| | | |||||||||||||||||| |||||
Sbjct: 35736986 agcagagttggatgcactggtt--------------tgatgaagacagttcttacttgga 35736941
Query: 639 tgaagcagcagctgcacctgcaattccagaaggtgttcccactgacacaaagaataagga 698
|||||||||||||||||||||||||||||||| |||| ||| ||| ||||||||||||||
Sbjct: 35736940 tgaagcagcagctgcacctgcaattccagaagctgtttccattgatacaaagaataagga 35736881
Query: 699 tggagtcctggtggatgaatttggattgccacagatccctgcttcgtagacatgcaccat 758
||||||| ||||||||||||| |||| | |||| ||||||||||||||||| |||| |||
Sbjct: 35736880 tggagtcatggtggatgaattcggatcgacacatatccctgcttcgtagacttgcatcat 35736821
Query: 759 tcaagtatatcatgtaaaataaatacatattctggga 795
||||||| || ||| ||||||| ||||||| |||||
Sbjct: 35736820 tcaagtacttcgtgtgaaataaacacatattttggga 35736784
Score = 410 bits (207), Expect = e-112
Identities = 393/457 (85%), Gaps = 16/457 (3%)
Strand = Plus / Plus
Query: 341 agtcatttaacatggaacaagccaattacaccatccagtcattgaaggacaccaagacca 400
||||||| ||| ||||| ||||| ||||||||||| |||| |||||||||||||||||
Sbjct: 35904281 agtcattcaacgtggaatcagccagttacaccatccggtcactgaaggacaccaagaccc 35904340
Query: 401 cggtcgacgctatgaaactgggagtaaaggagatgaagaaagcatata--agcaagtgaa 458
|||| || |||||||| |||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 35904341 cggttgatgctatgaatgtgggagtaaatgagatgaagaaagcatatacaagcaagtgaa 35904400
Query: 459 aatcgaccagattgaggatctacaggaccagctagaagatatgatggaagatgcaaatga 518
|| |||||||||||||||||| | ||||||||| | |||||||||||||| |||||||
Sbjct: 35904401 aagtgaccagattgaggatctagaagaccagctaaagcatatgatggaagatacaaatga 35904460
Query: 519 aatccaagaagcactgagtcgtagttatggcacgccagaattagacgaagatgacctaga 578
|||||||||||||| |||| |||||||||||| ||||||||||| ||||||||||||||
Sbjct: 35904461 aatccaagaagcacggagttgtagttatggcaacccagaattagatgaagatgacctaga 35904520
Query: 579 agcggaattggatgcactaggtgatgaacttctggctgatgaagacagttcttatttgga 638
||| || ||||||||||| | | |||||||||||||||||| |||||
Sbjct: 35904521 agcagagttggatgcactggtt--------------tgatgaagacagttcttacttgga 35904566
Query: 639 tgaagcagcagctgcacctgcaattccagaaggtgttcccactgacacaaagaataagga 698
|||||||||||||||||||||||||||||||| |||| ||| ||| ||||||||||||||
Sbjct: 35904567 tgaagcagcagctgcacctgcaattccagaagctgtttccattgatacaaagaataagga 35904626
Query: 699 tggagtcctggtggatgaatttggattgccacagatccctgcttcgtagacatgcaccat 758
||||||| ||||||||||||| |||| | |||| ||||||||||||||||| |||| |||
Sbjct: 35904627 tggagtcatggtggatgaattcggatcgacacatatccctgcttcgtagacttgcatcat 35904686
Query: 759 tcaagtatatcatgtaaaataaatacatattctggga 795
||||||| || ||| ||||||| ||||||| |||||
Sbjct: 35904687 tcaagtacttcgtgtgaaataaacacatattttggga 35904723
Score = 58.0 bits (29), Expect = 9e-06
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 887 ttaagagactcattgcttggagaaggctttcctcatactaaattt 931
|||||||||||||||||||||| | | |||| |||||||||||||
Sbjct: 35736670 ttaagagactcattgcttggaggaaggtttcttcatactaaattt 35736626
Score = 58.0 bits (29), Expect = 9e-06
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 887 ttaagagactcattgcttggagaaggctttcctcatactaaattt 931
|||||||||||||||||||||| | | |||| |||||||||||||
Sbjct: 35904836 ttaagagactcattgcttggaggaaggtttcttcatactaaattt 35904880
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,462,458
Number of extensions: 219
Number of successful extensions: 219
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 14
Length of query: 945
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 924
Effective length of database: 2,808,413,156
Effective search space: 2594973756144
Effective search space used: 2594973756144
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)