Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013979
(1094 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850690.1| PREDICTED: similar to ionized calcium binding a... 231 3e-63
Alignment gi|XP_532072.2| PREDICTED: similar to allograft inflammatory fa... 189 3e-48
Alignment gi|XP_849334.1| PREDICTED: similar to allograft inflammatory fa... 189 3e-48
Alignment gi|XP_848956.1| PREDICTED: similar to EF hand domain containing... 57 4e-08
Alignment gi|XP_543290.2| PREDICTED: similar to EF hand domain containing... 55 2e-07
Alignment gi|XP_547653.1| PREDICTED: similar to Centrin-1 (Caltractin) [C... 50 4e-06
Alignment gi|XP_544274.2| PREDICTED: similar to calmodulin 1 [Canis famil... 50 4e-06
>ref|XP_850690.1| PREDICTED: similar to ionized calcium binding adapter molecule 2
[Canis familiaris].
Length = 246
Score = 231 bits (589), Expect(2) = 3e-63
Identities = 115/116 (99%), Positives = 115/116 (99%)
Frame = +3
Query: 240 EFLCDQKYSDEENLPEKLAAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKM 419
EFLCDQKYSDEENLPEKLAAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKM
Sbjct: 128 EFLCDQKYSDEENLPEKLAAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKM 187
Query: 420 ISEVTGGGSDTISYRDFVNMMLGKRSAVLKLVMMFEGKANESSPKPVGPPPERDIA 587
ISEVTGG SDTISYRDFVNMMLGKRSAVLKLVMMFEGKANESSPKPVGPPPERDIA
Sbjct: 188 ISEVTGGVSDTISYRDFVNMMLGKRSAVLKLVMMFEGKANESSPKPVGPPPERDIA 243
Score = 30.4 bits (67), Expect(2) = 3e-63
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = +2
Query: 176 RRESVRLAQSPAGEEAGRDQ 235
+RE VRLAQ AG EA RDQ
Sbjct: 107 KREGVRLAQGAAGAEAARDQ 126
>ref|XP_532072.2| PREDICTED: similar to allograft inflammatory factor 1 isoform 3
isoform 1 [Canis familiaris].
Length = 147
Score = 189 bits (481), Expect = 3e-48
Identities = 90/138 (65%), Positives = 115/138 (83%)
Frame = +3
Query: 174 QGGKAFGLLKARQERRLAEINREFLCDQKYSDEENLPEKLAAFKEKYMEFDLNNEGEIDL 353
QGGKAFGLLKA+QE RL EIN++FL D KYS +E+LP KL AFK+KYMEFDLN +G+ID+
Sbjct: 8 QGGKAFGLLKAQQEDRLDEINKQFLDDPKYSSDEDLPSKLEAFKKKYMEFDLNGDGDIDI 67
Query: 354 MSLKRMMEKLGVPKTHLEMKKMISEVTGGGSDTISYRDFVNMMLGKRSAVLKLVMMFEGK 533
M+LKRM+EKLGVPKTHLE+KK+I EV+ +T SY DF+ MMLGK+SA+LK+++M+E K
Sbjct: 68 MALKRMLEKLGVPKTHLELKKLIREVSSSSGETFSYSDFLKMMLGKKSAILKIILMYEEK 127
Query: 534 ANESSPKPVGPPPERDIA 587
A E KP GPP ++DI+
Sbjct: 128 AREQE-KPAGPPAKKDIS 144
>ref|XP_849334.1| PREDICTED: similar to allograft inflammatory factor 1 isoform 3
isoform 2 [Canis familiaris].
Length = 147
Score = 189 bits (481), Expect = 3e-48
Identities = 90/138 (65%), Positives = 115/138 (83%)
Frame = +3
Query: 174 QGGKAFGLLKARQERRLAEINREFLCDQKYSDEENLPEKLAAFKEKYMEFDLNNEGEIDL 353
QGGKAFGLLKA+QE RL EIN++FL D KYS +E+LP KL AFK+KYMEFDLN +G+ID+
Sbjct: 8 QGGKAFGLLKAQQEDRLDEINKQFLDDPKYSSDEDLPSKLEAFKKKYMEFDLNGDGDIDI 67
Query: 354 MSLKRMMEKLGVPKTHLEMKKMISEVTGGGSDTISYRDFVNMMLGKRSAVLKLVMMFEGK 533
M+LKRM+EKLGVPKTHLE+KK+I EV+ +T SY DF+ MMLGK+SA+LK+++M+E K
Sbjct: 68 MALKRMLEKLGVPKTHLELKKLIREVSSSSGETFSYSDFLKMMLGKKSAILKIILMYEEK 127
Query: 534 ANESSPKPVGPPPERDIA 587
A E KP GPP ++DI+
Sbjct: 128 AREQE-KPAGPPAKKDIS 144
>ref|XP_848956.1| PREDICTED: similar to EF hand domain containing 2 [Canis
familiaris].
Length = 248
Score = 56.6 bits (135), Expect = 4e-08
Identities = 26/53 (49%), Positives = 36/53 (67%)
Frame = +3
Query: 315 MEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGGSDTISYRDFV 473
+++D +G IDLM LK MMEKLG P+THL +K MI EV +S+R+F+
Sbjct: 110 LKYDAGRDGFIDLMELKLMMEKLGAPQTHLGLKNMIKEVDEDFDSKLSFREFL 162
>ref|XP_543290.2| PREDICTED: similar to EF hand domain containing 1 [Canis
familiaris].
Length = 141
Score = 54.7 bits (130), Expect = 2e-07
Identities = 26/51 (50%), Positives = 34/51 (66%)
Frame = +3
Query: 321 FDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGGSDTISYRDFV 473
+D +G IDLM LK MMEKLG P+THL +K MI EV +S+R+F+
Sbjct: 4 YDSGRDGFIDLMELKLMMEKLGAPQTHLGLKNMIKEVDEDFDGRLSFREFL 54
>ref|XP_547653.1| PREDICTED: similar to Centrin-1 (Caltractin) [Canis familiaris].
Length = 172
Score = 50.1 bits (118), Expect = 4e-06
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Frame = +3
Query: 303 KEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGGSDTISYRDFVNMM 482
+E + FD + G ID+ LK M LG EMKKMISEV G+ IS+ DF+ +M
Sbjct: 34 REAFDLFDADGSGTIDVKELKVAMRALGFEPRKEEMKKMISEVDKEGTGKISFNDFLGVM 93
Query: 483 LGK------RSAVLKLVMMFE 527
K + +LK +F+
Sbjct: 94 TQKMAEKDTKEEILKAFRLFD 114
>ref|XP_544274.2| PREDICTED: similar to calmodulin 1 [Canis familiaris].
Length = 231
Score = 50.1 bits (118), Expect = 4e-06
Identities = 25/72 (34%), Positives = 42/72 (58%)
Frame = +3
Query: 270 EENLPEKLAAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGGSD 449
EE PE++A FKE + FD N + I+ L +M+ LG + E+K +I++V G
Sbjct: 85 EELPPEQVAKFKEVFSRFDKNGDNTINTQELGAVMQALGQDISEDELKMLIAQVDTDGDG 144
Query: 450 TISYRDFVNMML 485
IS+++F+ M+
Sbjct: 145 VISFQEFLEAMV 156
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,367,151
Number of extensions: 998242
Number of successful extensions: 4203
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 4177
Number of HSP's successfully gapped: 8
Length of query: 364
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 260
Effective length of database: 15,407,560
Effective search space: 4005965600
Effective search space used: 4005965600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013979
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013979
(1094 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001071547.1| allograft inflammatory factor 1-like [Bos ta... 281 7e-76
Alignment gi|NP_776410.1| allograft inflammatory factor 1 [Bos taurus]. 183 2e-46
Alignment gi|NP_001096715.1| EF-hand domain-containing protein D2 [Bos ta... 59 8e-09
Alignment gi|NP_001069300.1| EF-hand domain-containing protein D1 [Bos ta... 55 1e-07
Alignment gi|NP_001091518.1| calmodulin-like 5 [Bos taurus]. 50 4e-06
>ref|NP_001071547.1| allograft inflammatory factor 1-like [Bos taurus].
Length = 150
Score = 281 bits (719), Expect = 7e-76
Identities = 142/147 (96%), Positives = 142/147 (96%)
Frame = +3
Query: 147 MSVALSNRFQGGKAFGLLKARQERRLAEINREFLCDQKYSDEENLPEKLAAFKEKYMEFD 326
MSVA SNRFQGGKAFGLLKARQERRLAEINREFLCDQKYSDEENLPEKL AFKEKYMEFD
Sbjct: 1 MSVAFSNRFQGGKAFGLLKARQERRLAEINREFLCDQKYSDEENLPEKLTAFKEKYMEFD 60
Query: 327 LNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGGSDTISYRDFVNMMLGKRSAVL 506
LNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGG SDTISYRDFVNMMLGKRSAVL
Sbjct: 61 LNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGVSDTISYRDFVNMMLGKRSAVL 120
Query: 507 KLVMMFEGKANESSPKPVGPPPERDIA 587
KLVMMFEGKANE S KPVGPPPERDIA
Sbjct: 121 KLVMMFEGKANEGSSKPVGPPPERDIA 147
>ref|NP_776410.1| allograft inflammatory factor 1 [Bos taurus].
Length = 147
Score = 183 bits (465), Expect = 2e-46
Identities = 90/138 (65%), Positives = 112/138 (81%)
Frame = +3
Query: 174 QGGKAFGLLKARQERRLAEINREFLCDQKYSDEENLPEKLAAFKEKYMEFDLNNEGEIDL 353
QGGKAFGL KA+QE R+ EIN++FL D KYS +E+LP KL AFK+KYMEFDLN +G ID+
Sbjct: 8 QGGKAFGLRKAQQEERINEINQQFLDDPKYSSDEDLPSKLEAFKKKYMEFDLNEDGGIDI 67
Query: 354 MSLKRMMEKLGVPKTHLEMKKMISEVTGGGSDTISYRDFVNMMLGKRSAVLKLVMMFEGK 533
MSLKRMMEKLGVPKTHLE+KK+I EV+ G +T SY DF+ MMLGKRSA+LK+++M+E K
Sbjct: 68 MSLKRMMEKLGVPKTHLELKKLIMEVSSGPGETFSYSDFLKMMLGKRSAILKMILMYEEK 127
Query: 534 ANESSPKPVGPPPERDIA 587
A E KP G P ++ I+
Sbjct: 128 AREQE-KPTGLPAKKAIS 144
>ref|NP_001096715.1| EF-hand domain-containing protein D2 [Bos taurus].
Length = 242
Score = 58.9 bits (141), Expect = 8e-09
Identities = 27/63 (42%), Positives = 41/63 (65%)
Frame = +3
Query: 285 EKLAAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGGSDTISYR 464
+++ ++ + E+D +G IDLM LK MMEKLG P+THL +K MI EV +S+R
Sbjct: 94 KQIKDMEKMFKEYDAGRDGFIDLMELKLMMEKLGAPQTHLGLKNMIKEVDEDFDSKLSFR 153
Query: 465 DFV 473
+F+
Sbjct: 154 EFL 156
>ref|NP_001069300.1| EF-hand domain-containing protein D1 [Bos taurus].
Length = 236
Score = 55.1 bits (131), Expect = 1e-07
Identities = 26/51 (50%), Positives = 34/51 (66%)
Frame = +3
Query: 321 FDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGGSDTISYRDFV 473
+D +G IDLM LK MMEKLG P+THL +K MI EV +S+R+F+
Sbjct: 99 YDAGRDGFIDLMELKLMMEKLGAPQTHLGLKSMIKEVDEDFDGKLSFREFL 149
>ref|NP_001091518.1| calmodulin-like 5 [Bos taurus].
Length = 148
Score = 50.1 bits (118), Expect = 4e-06
Identities = 22/66 (33%), Positives = 43/66 (65%)
Frame = +3
Query: 285 EKLAAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGGSDTISYR 464
E++A FKE + FD N +G I + L +M+++G+ + E+KK+IS++ + +IS++
Sbjct: 8 EQVAEFKEAFDRFDKNKDGTISVQELGTVMQEVGLKLSEAELKKLISQLDTDKNGSISFQ 67
Query: 465 DFVNMM 482
+F+ M
Sbjct: 68 EFLEAM 73
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,677,795
Number of extensions: 966907
Number of successful extensions: 3867
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3861
Number of HSP's successfully gapped: 5
Length of query: 364
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 260
Effective length of database: 14,240,222
Effective search space: 3702457720
Effective search space used: 3702457720
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013979
(1094 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003353736.1| PREDICTED: allograft inflammatory factor 1-l... 292 2e-79
Alignment gi|XP_003353737.1| PREDICTED: allograft inflammatory factor 1-l... 235 3e-62
Alignment gi|NP_001123422.1| allograft inflammatory factor 1 [Sus scrofa]. 189 3e-48
Alignment gi|XP_003356207.1| PREDICTED: EF-hand domain-containing protein... 58 1e-08
Alignment gi|XP_003127676.1| PREDICTED: EF-hand domain-containing protein... 58 1e-08
Alignment gi|XP_001925420.3| PREDICTED: EF-hand domain-containing protein... 57 2e-08
Alignment gi|XP_003360829.1| PREDICTED: centrin-1-like [Sus scrofa]. 48 8e-06
>ref|XP_003353736.1| PREDICTED: allograft inflammatory factor 1-like isoform 1 [Sus
scrofa].
Length = 150
Score = 292 bits (748), Expect = 2e-79
Identities = 147/147 (100%), Positives = 147/147 (100%)
Frame = +3
Query: 147 MSVALSNRFQGGKAFGLLKARQERRLAEINREFLCDQKYSDEENLPEKLAAFKEKYMEFD 326
MSVALSNRFQGGKAFGLLKARQERRLAEINREFLCDQKYSDEENLPEKLAAFKEKYMEFD
Sbjct: 1 MSVALSNRFQGGKAFGLLKARQERRLAEINREFLCDQKYSDEENLPEKLAAFKEKYMEFD 60
Query: 327 LNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGGSDTISYRDFVNMMLGKRSAVL 506
LNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGGSDTISYRDFVNMMLGKRSAVL
Sbjct: 61 LNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGGSDTISYRDFVNMMLGKRSAVL 120
Query: 507 KLVMMFEGKANESSPKPVGPPPERDIA 587
KLVMMFEGKANESSPKPVGPPPERDIA
Sbjct: 121 KLVMMFEGKANESSPKPVGPPPERDIA 147
>ref|XP_003353737.1| PREDICTED: allograft inflammatory factor 1-like isoform 2 [Sus
scrofa].
Length = 155
Score = 235 bits (600), Expect = 3e-62
Identities = 116/120 (96%), Positives = 118/120 (98%)
Frame = +3
Query: 228 EINREFLCDQKYSDEENLPEKLAAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLE 407
++ EFLCDQKYSDEENLPEKLAAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLE
Sbjct: 33 QVLEEFLCDQKYSDEENLPEKLAAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLE 92
Query: 408 MKKMISEVTGGGSDTISYRDFVNMMLGKRSAVLKLVMMFEGKANESSPKPVGPPPERDIA 587
MKKMISEVTGGGSDTISYRDFVNMMLGKRSAVLKLVMMFEGKANESSPKPVGPPPERDIA
Sbjct: 93 MKKMISEVTGGGSDTISYRDFVNMMLGKRSAVLKLVMMFEGKANESSPKPVGPPPERDIA 152
>ref|NP_001123422.1| allograft inflammatory factor 1 [Sus scrofa].
Length = 147
Score = 189 bits (479), Expect = 3e-48
Identities = 91/138 (65%), Positives = 113/138 (81%)
Frame = +3
Query: 174 QGGKAFGLLKARQERRLAEINREFLCDQKYSDEENLPEKLAAFKEKYMEFDLNNEGEIDL 353
QGGKAFGLLKA+QE RL EIN++FL D KYS +E+L KL AFK+KYMEFDLN G+ID+
Sbjct: 8 QGGKAFGLLKAQQEERLNEINKQFLDDPKYSSDEDLSSKLEAFKQKYMEFDLNGNGDIDI 67
Query: 354 MSLKRMMEKLGVPKTHLEMKKMISEVTGGGSDTISYRDFVNMMLGKRSAVLKLVMMFEGK 533
MSLKRM+EKLGVPKTHLE+KK+I EV+ G +T SY DF+ MMLGKRSA+LK+++M+E K
Sbjct: 68 MSLKRMLEKLGVPKTHLELKKLIKEVSSGSGETFSYSDFLKMMLGKRSAILKMILMYEEK 127
Query: 534 ANESSPKPVGPPPERDIA 587
A E KP GPP ++ I+
Sbjct: 128 AREQE-KPTGPPAKKAIS 144
>ref|XP_003356207.1| PREDICTED: EF-hand domain-containing protein D2-like [Sus scrofa].
Length = 239
Score = 57.8 bits (138), Expect = 1e-08
Identities = 26/63 (41%), Positives = 41/63 (65%)
Frame = +3
Query: 285 EKLAAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGGSDTISYR 464
+++ ++ + ++D +G IDLM LK MMEKLG P+THL +K MI EV +S+R
Sbjct: 91 KQIKDMEKMFKQYDAGRDGFIDLMELKLMMEKLGAPQTHLGLKNMIKEVDEDFDSKLSFR 150
Query: 465 DFV 473
+F+
Sbjct: 151 EFL 153
>ref|XP_003127676.1| PREDICTED: EF-hand domain-containing protein D2-like [Sus scrofa].
Length = 239
Score = 57.8 bits (138), Expect = 1e-08
Identities = 26/63 (41%), Positives = 41/63 (65%)
Frame = +3
Query: 285 EKLAAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGGSDTISYR 464
+++ ++ + ++D +G IDLM LK MMEKLG P+THL +K MI EV +S+R
Sbjct: 91 KQIKDMEKMFKQYDAGRDGFIDLMELKLMMEKLGAPQTHLGLKNMIKEVDEDFDSKLSFR 150
Query: 465 DFV 473
+F+
Sbjct: 151 EFL 153
>ref|XP_001925420.3| PREDICTED: EF-hand domain-containing protein D1-like [Sus scrofa].
Length = 183
Score = 57.0 bits (136), Expect = 2e-08
Identities = 26/56 (46%), Positives = 37/56 (66%)
Frame = +3
Query: 306 EKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGGSDTISYRDFV 473
++ + +D +G IDLM LK MMEKLG P+THL +K MI EV +S+R+F+
Sbjct: 41 KRLLRYDAGRDGYIDLMELKLMMEKLGAPQTHLGLKSMIKEVDEDFDGKLSFREFL 96
>ref|XP_003360829.1| PREDICTED: centrin-1-like [Sus scrofa].
Length = 172
Score = 48.1 bits (113), Expect = 8e-06
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Frame = +3
Query: 303 KEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGGSDTISYRDFVNMM 482
+E + FD + G ID+ LK M LG EMK+MISEV G+ IS+ DF+ +M
Sbjct: 34 REAFDLFDADGSGTIDVKELKVAMRALGFEPRKEEMKRMISEVDKEGTGKISFNDFLAVM 93
Query: 483 LGK------RSAVLKLVMMFE 527
K + +LK +F+
Sbjct: 94 TQKMAEKDTKEEILKAFRLFD 114
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,690,509
Number of extensions: 626768
Number of successful extensions: 2597
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2593
Number of HSP's successfully gapped: 7
Length of query: 364
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 264
Effective length of database: 8,854,232
Effective search space: 2337517248
Effective search space used: 2337517248
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013979
(1094 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_660126.1| allograft inflammatory factor 1-like [Mus muscu... 284 7e-77
Alignment gi|NP_062340.1| allograft inflammatory factor 1 [Mus musculus]. 184 1e-46
Alignment gi|NP_080270.2| EF-hand domain-containing protein D2 [Mus muscu... 58 1e-08
Alignment gi|NP_083165.1| EF-hand domain-containing protein D1 [Mus muscu... 56 4e-08
>ref|NP_660126.1| allograft inflammatory factor 1-like [Mus musculus].
Length = 150
Score = 284 bits (727), Expect = 7e-77
Identities = 143/147 (97%), Positives = 144/147 (97%)
Frame = +3
Query: 147 MSVALSNRFQGGKAFGLLKARQERRLAEINREFLCDQKYSDEENLPEKLAAFKEKYMEFD 326
MSVALSNRFQGGKAFGLLKARQE+RL EINREFLCDQKYSDEENLPEKLAAFKEKYMEFD
Sbjct: 1 MSVALSNRFQGGKAFGLLKARQEKRLEEINREFLCDQKYSDEENLPEKLAAFKEKYMEFD 60
Query: 327 LNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGGSDTISYRDFVNMMLGKRSAVL 506
LNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGG SDTISYRDFVNMMLGKRSAVL
Sbjct: 61 LNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGVSDTISYRDFVNMMLGKRSAVL 120
Query: 507 KLVMMFEGKANESSPKPVGPPPERDIA 587
KLVMMFEGKANESSPKP GPPPERDIA
Sbjct: 121 KLVMMFEGKANESSPKPAGPPPERDIA 147
>ref|NP_062340.1| allograft inflammatory factor 1 [Mus musculus].
Length = 147
Score = 184 bits (466), Expect = 1e-46
Identities = 88/142 (61%), Positives = 114/142 (80%)
Frame = +3
Query: 162 SNRFQGGKAFGLLKARQERRLAEINREFLCDQKYSDEENLPEKLAAFKEKYMEFDLNNEG 341
S QGGKAFGLLKA+QE RL IN++FL D KYS++E+LP KL AFK KYMEFDLN G
Sbjct: 4 SRDLQGGKAFGLLKAQQEERLEGINKQFLDDPKYSNDEDLPSKLEAFKVKYMEFDLNGNG 63
Query: 342 EIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGGSDTISYRDFVNMMLGKRSAVLKLVMM 521
+ID+MSLKRM+EKLGVPKTHLE+K++I EV+ G +T SY DF+ MMLGKRSA+L++++M
Sbjct: 64 DIDIMSLKRMLEKLGVPKTHLELKRLIREVSSGSEETFSYSDFLRMMLGKRSAILRMILM 123
Query: 522 FEGKANESSPKPVGPPPERDIA 587
+E K N+ +P GPP ++ I+
Sbjct: 124 YEEK-NKEHKRPTGPPAKKAIS 144
>ref|NP_080270.2| EF-hand domain-containing protein D2 [Mus musculus].
Length = 240
Score = 57.8 bits (138), Expect = 1e-08
Identities = 26/63 (41%), Positives = 41/63 (65%)
Frame = +3
Query: 285 EKLAAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGGSDTISYR 464
+++ ++ + ++D +G IDLM LK MMEKLG P+THL +K MI EV +S+R
Sbjct: 92 KQIKDMEKMFKQYDAGRDGFIDLMELKLMMEKLGAPQTHLGLKSMIQEVDEDFDSKLSFR 151
Query: 465 DFV 473
+F+
Sbjct: 152 EFL 154
>ref|NP_083165.1| EF-hand domain-containing protein D1 [Mus musculus].
Length = 240
Score = 56.2 bits (134), Expect = 4e-08
Identities = 27/61 (44%), Positives = 38/61 (62%)
Frame = +3
Query: 291 LAAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGGSDTISYRDF 470
L ++ + +D +G IDLM LK MMEKLG P+THL +K MI EV +S+R+F
Sbjct: 93 LKDLEKMFKTYDAGRDGFIDLMELKLMMEKLGAPQTHLGLKSMIKEVDEDFDGKLSFREF 152
Query: 471 V 473
+
Sbjct: 153 L 153
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,623,269
Number of extensions: 807331
Number of successful extensions: 3203
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3199
Number of HSP's successfully gapped: 4
Length of query: 364
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 261
Effective length of database: 12,523,851
Effective search space: 3268725111
Effective search space used: 3268725111
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013979
(1094 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_113614.1| allograft inflammatory factor 1-like isoform 1 ... 283 3e-76
Alignment gi|NP_001172024.1| allograft inflammatory factor 1-like isoform... 268 5e-72
Alignment gi|NP_001172025.1| allograft inflammatory factor 1-like isoform... 191 8e-49
Alignment gi|NP_001614.3| allograft inflammatory factor 1 isoform 3 [Homo... 191 1e-48
Alignment gi|NP_116573.1| allograft inflammatory factor 1 isoform 1 [Homo... 124 2e-28
Alignment gi|NP_004838.1| allograft inflammatory factor 1 isoform 2 [Homo... 86 6e-17
Alignment gi|NP_077305.2| EF-hand domain-containing protein D2 [Homo sapi... 58 2e-08
Alignment gi|NP_001230181.1| EF-hand domain-containing protein D1 isoform... 57 4e-08
Alignment gi|NP_079478.1| EF-hand domain-containing protein D1 isoform 1 ... 55 1e-07
Alignment gi|NP_004057.1| centrin-1 [Homo sapiens]. 50 5e-06
>ref|NP_113614.1| allograft inflammatory factor 1-like isoform 1 [Homo sapiens].
Length = 150
Score = 283 bits (723), Expect = 3e-76
Identities = 143/147 (97%), Positives = 143/147 (97%)
Frame = +3
Query: 147 MSVALSNRFQGGKAFGLLKARQERRLAEINREFLCDQKYSDEENLPEKLAAFKEKYMEFD 326
MS LSNRFQGGKAFGLLKARQERRLAEINREFLCDQKYSDEENLPEKL AFKEKYMEFD
Sbjct: 1 MSGELSNRFQGGKAFGLLKARQERRLAEINREFLCDQKYSDEENLPEKLTAFKEKYMEFD 60
Query: 327 LNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGGSDTISYRDFVNMMLGKRSAVL 506
LNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGG SDTISYRDFVNMMLGKRSAVL
Sbjct: 61 LNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGVSDTISYRDFVNMMLGKRSAVL 120
Query: 507 KLVMMFEGKANESSPKPVGPPPERDIA 587
KLVMMFEGKANESSPKPVGPPPERDIA
Sbjct: 121 KLVMMFEGKANESSPKPVGPPPERDIA 147
>ref|NP_001172024.1| allograft inflammatory factor 1-like isoform 3 [Homo sapiens].
Length = 176
Score = 268 bits (686), Expect = 5e-72
Identities = 143/173 (82%), Positives = 143/173 (82%), Gaps = 26/173 (15%)
Frame = +3
Query: 147 MSVALSNRFQGGKAFGLLKARQERRLAEINR--------------------------EFL 248
MS LSNRFQGGKAFGLLKARQERRLAEINR EFL
Sbjct: 1 MSGELSNRFQGGKAFGLLKARQERRLAEINRYCAGREPQLQRISCSQHSCLLALLFQEFL 60
Query: 249 CDQKYSDEENLPEKLAAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISE 428
CDQKYSDEENLPEKL AFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISE
Sbjct: 61 CDQKYSDEENLPEKLTAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISE 120
Query: 429 VTGGGSDTISYRDFVNMMLGKRSAVLKLVMMFEGKANESSPKPVGPPPERDIA 587
VTGG SDTISYRDFVNMMLGKRSAVLKLVMMFEGKANESSPKPVGPPPERDIA
Sbjct: 121 VTGGVSDTISYRDFVNMMLGKRSAVLKLVMMFEGKANESSPKPVGPPPERDIA 173
>ref|NP_001172025.1| allograft inflammatory factor 1-like isoform 4 [Homo sapiens].
Length = 102
Score = 191 bits (486), Expect = 8e-49
Identities = 96/101 (95%), Positives = 96/101 (95%)
Frame = +3
Query: 147 MSVALSNRFQGGKAFGLLKARQERRLAEINREFLCDQKYSDEENLPEKLAAFKEKYMEFD 326
MS LSNRFQGGKAFGLLKARQERRLAEINREFLCDQKYSDEENLPEKL AFKEKYMEFD
Sbjct: 1 MSGELSNRFQGGKAFGLLKARQERRLAEINREFLCDQKYSDEENLPEKLTAFKEKYMEFD 60
Query: 327 LNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGGSD 449
LNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGG D
Sbjct: 61 LNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGSHD 101
>ref|NP_001614.3| allograft inflammatory factor 1 isoform 3 [Homo sapiens].
Length = 147
Score = 191 bits (485), Expect = 1e-48
Identities = 92/138 (66%), Positives = 113/138 (81%)
Frame = +3
Query: 174 QGGKAFGLLKARQERRLAEINREFLCDQKYSDEENLPEKLAAFKEKYMEFDLNNEGEIDL 353
QGGKAFGLLKA+QE RL EIN++FL D KYS +E+LP KL FKEKYMEFDLN G+ID+
Sbjct: 8 QGGKAFGLLKAQQEERLDEINKQFLDDPKYSSDEDLPSKLEGFKEKYMEFDLNGNGDIDI 67
Query: 354 MSLKRMMEKLGVPKTHLEMKKMISEVTGGGSDTISYRDFVNMMLGKRSAVLKLVMMFEGK 533
MSLKRM+EKLGVPKTHLE+KK+I EV+ G +T SY DF+ MMLGKRSA+LK+++M+E K
Sbjct: 68 MSLKRMLEKLGVPKTHLELKKLIGEVSSGSGETFSYPDFLRMMLGKRSAILKMILMYEEK 127
Query: 534 ANESSPKPVGPPPERDIA 587
A E KP GPP ++ I+
Sbjct: 128 AREKE-KPTGPPAKKAIS 144
>ref|NP_116573.1| allograft inflammatory factor 1 isoform 1 [Homo sapiens].
Length = 93
Score = 124 bits (310), Expect = 2e-28
Identities = 58/91 (63%), Positives = 74/91 (81%)
Frame = +3
Query: 315 MEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGGSDTISYRDFVNMMLGKR 494
MEFDLN G+ID+MSLKRM+EKLGVPKTHLE+KK+I EV+ G +T SY DF+ MMLGKR
Sbjct: 1 MEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGETFSYPDFLRMMLGKR 60
Query: 495 SAVLKLVMMFEGKANESSPKPVGPPPERDIA 587
SA+LK+++M+E KA E KP GPP ++ I+
Sbjct: 61 SAILKMILMYEEKAREKE-KPTGPPAKKAIS 90
>ref|NP_004838.1| allograft inflammatory factor 1 isoform 2 [Homo sapiens].
Length = 132
Score = 85.9 bits (211), Expect = 6e-17
Identities = 39/55 (70%), Positives = 48/55 (87%)
Frame = +3
Query: 348 DLMSLKRMMEKLGVPKTHLEMKKMISEVTGGGSDTISYRDFVNMMLGKRSAVLKL 512
D+MSLKRM+EKLGVPKTHLE+KK+I EV+ G +T SY DF+ MMLGKRSA+LK+
Sbjct: 78 DIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGETFSYPDFLRMMLGKRSAILKM 132
>ref|NP_077305.2| EF-hand domain-containing protein D2 [Homo sapiens].
Length = 240
Score = 57.8 bits (138), Expect = 2e-08
Identities = 26/63 (41%), Positives = 41/63 (65%)
Frame = +3
Query: 285 EKLAAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGGSDTISYR 464
+++ ++ + ++D +G IDLM LK MMEKLG P+THL +K MI EV +S+R
Sbjct: 92 KQIKDMEKMFKQYDAGRDGFIDLMELKLMMEKLGAPQTHLGLKNMIKEVDEDFDSKLSFR 151
Query: 465 DFV 473
+F+
Sbjct: 152 EFL 154
>ref|NP_001230181.1| EF-hand domain-containing protein D1 isoform 2 [Homo sapiens].
Length = 143
Score = 56.6 bits (135), Expect = 4e-08
Identities = 26/53 (49%), Positives = 36/53 (67%)
Frame = +3
Query: 315 MEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGGSDTISYRDFV 473
+++D +G IDLM LK MMEKLG P+THL +K MI EV +S+R+F+
Sbjct: 4 LQYDAGRDGFIDLMELKLMMEKLGAPQTHLGLKSMIKEVDEDFDGKLSFREFL 56
>ref|NP_079478.1| EF-hand domain-containing protein D1 isoform 1 [Homo sapiens].
Length = 239
Score = 55.1 bits (131), Expect = 1e-07
Identities = 26/51 (50%), Positives = 34/51 (66%)
Frame = +3
Query: 321 FDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGGSDTISYRDFV 473
+D +G IDLM LK MMEKLG P+THL +K MI EV +S+R+F+
Sbjct: 102 YDAGRDGFIDLMELKLMMEKLGAPQTHLGLKSMIKEVDEDFDGKLSFREFL 152
>ref|NP_004057.1| centrin-1 [Homo sapiens].
Length = 172
Score = 49.7 bits (117), Expect = 5e-06
Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Frame = +3
Query: 303 KEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGGSDTISYRDFVNMM 482
+E + FD++ G ID LK M LG EMKKMISEV G+ IS+ DF+ +M
Sbjct: 34 REAFDLFDVDGSGTIDAKELKVAMRALGFEPRKEEMKKMISEVDREGTGKISFNDFLAVM 93
Query: 483 LGKRS------AVLKLVMMFE 527
K S +LK +F+
Sbjct: 94 TQKMSEKDTKEEILKAFRLFD 114
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,567,114
Number of extensions: 979831
Number of successful extensions: 4060
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 4052
Number of HSP's successfully gapped: 10
Length of query: 364
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 260
Effective length of database: 14,868,908
Effective search space: 3865916080
Effective search space used: 3865916080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013979
(1094 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 571 e-160
Sscrofa_Chr07 62 7e-07
>Sscrofa_Chr01
|| Length = 315321322
Score = 571 bits (288), Expect = e-160
Identities = 327/342 (95%), Gaps = 1/342 (0%)
Strand = Plus / Plus
Query: 734 catcaacagaatcagtgatctctttgtaaagcacaaatcatctgccttaagggggctctg 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305126822 catcaacagaatcagtgatctctttgtaaagcacaaatcatctgccttaagggggctctg 305126881
Query: 794 ccctctcttccctccgtctcccctccctgtgcagaagggctgacattaaaccaaaaactg 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305126882 ccctctcttccctccgtctcccctccctgtgcagaagggctgacattaaaccaaaaactg 305126941
Query: 854 gagggggcgaggccaggacggggtnnnnnnnncacccaaaagcccatgatccccgcactt 913
|||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 305126942 gagggggcgaggccaggacggggtggggggggcacccagaagcccatgatccccgcactt 305127001
Query: 914 gaagctggcactgtccatccttctacgagatctctgaattaagttctggcacctggcctg 973
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 305127002 gaagctggcactgtccatccttctacgagatctctgagttaagttctggcacctggcctg 305127061
Query: 974 -ccctgntttcagaagaccctgagtcagaacagggctgcagggcctcgttagggntttca 1032
||||| ||||||||||||||||||||||||||||||| ||||||||||||||| || ||
Sbjct: 305127062 accctggtttcagaagaccctgagtcagaacagggctgaagggcctcgttagggtttcca 305127121
Query: 1033 gtgctctcgggcagaccaggatgtggccatgcagtgccccac 1074
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305127122 gtgctctcgggcagaccaggatgtggccatgcagtgccccac 305127163
Score = 343 bits (173), Expect = 1e-91
Identities = 176/177 (99%)
Strand = Plus / Plus
Query: 2 gggagtgtccggcctcccgcgccatccctccgcccctcggtcccgccgccacacgccgcg 61
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305102432 gggagtgtccggccgcccgcgccatccctccgcccctcggtcccgccgccacacgccgcg 305102491
Query: 62 ggagctcggaccaggcgcctgtccctcctcctcgtccctcgccgcggccgcgaagccccg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305102492 ggagctcggaccaggcgcctgtccctcctcctcgtccctcgccgcggccgcgaagccccg 305102551
Query: 122 agccggcgggagcgcggtgcacaccatgtcggtcgcgctcagcaacaggttccaagg 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305102552 agccggcgggagcgcggtgcacaccatgtcggtcgcgctcagcaacaggttccaagg 305102608
Score = 325 bits (164), Expect = 3e-86
Identities = 164/164 (100%)
Strand = Plus / Plus
Query: 348 gacctgatgtctttaaagaggatgatggagaagctcggggtccccaagacccacctggag 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305120959 gacctgatgtctttaaagaggatgatggagaagctcggggtccccaagacccacctggag 305121018
Query: 408 atgaagaagatgatctcggaggtgaccggtgggggcagcgacaccatctcctacagagac 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305121019 atgaagaagatgatctcggaggtgaccggtgggggcagcgacaccatctcctacagagac 305121078
Query: 468 tttgtgaacatgatgctgggaaaacggtccgctgtcctcaagct 511
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305121079 tttgtgaacatgatgctgggaaaacggtccgctgtcctcaagct 305121122
Score = 153 bits (77), Expect = 2e-34
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 512 agtcatgatgtttgaaggaaaagccaacgagagcagccccaagccagttggcccccctcc 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305126600 agtcatgatgtttgaaggaaaagccaacgagagcagccccaagccagttggcccccctcc 305126659
Query: 572 agagagagacattgcca 588
|||||||||||||||||
Sbjct: 305126660 agagagagacattgcca 305126676
Score = 135 bits (68), Expect = 6e-29
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 239 ggagtttctctgtgaccagaagtacagtgatgaagagaacctgccggaaaagctcgcggc 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305114570 ggagtttctctgtgaccagaagtacagtgatgaagagaacctgccggaaaagctcgcggc 305114629
Query: 299 cttcaaag 306
||||||||
Sbjct: 305114630 cttcaaag 305114637
Score = 129 bits (65), Expect = 3e-27
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 176 aggagggaaagcgttcggcttgctcaaagcccggcaggagaggaggctggccgagatcaa 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305102823 aggagggaaagcgttcggcttgctcaaagcccggcaggagaggaggctggccgagatcaa 305102882
Query: 236 caggg 240
|||||
Sbjct: 305102883 caggg 305102887
Score = 87.7 bits (44), Expect = 1e-14
Identities = 44/44 (100%)
Strand = Plus / Plus
Query: 305 agagaagtacatggagtttgacctgaacaatgagggcgagatcg 348
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305117524 agagaagtacatggagtttgacctgaacaatgagggcgagatcg 305117567
>Sscrofa_Chr07
|| Length = 134764511
Score = 61.9 bits (31), Expect = 7e-07
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 373 tggagaagctcggggtccccaagacccacctggag 407
|||||||||| ||||||||||||||||||||||||
Sbjct: 27521687 tggagaagcttggggtccccaagacccacctggag 27521653
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,202,277
Number of extensions: 170
Number of successful extensions: 170
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 9
Length of query: 1094
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1073
Effective length of database: 2,808,413,156
Effective search space: 3013427316388
Effective search space used: 3013427316388
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)