Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013985
(1678 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001035617.2| 39S ribosomal protein L2, mitochondrial [Bos... 473 e-133
Alignment gi|XP_002697294.1| PREDICTED: mitochondrial ribosomal protein L... 473 e-133
Alignment gi|XP_001790570.1| PREDICTED: 39S ribosomal protein L2, mitocho... 473 e-133
>ref|NP_001035617.2| 39S ribosomal protein L2, mitochondrial [Bos taurus].
Length = 306
Score = 473 bits (1217), Expect = e-133
Identities = 240/272 (88%), Positives = 244/272 (89%)
Frame = +2
Query: 863 MALRVLTRALSSLSLTPRIAVAPGLNLLPAVQVTNNVLLTLPSGLMSLPCRPILTSVALS 1042
MALRV+TRAL SLSLTPRIA PG +LLPA QVTNNVLL LPS M LP RP+LTSVALS
Sbjct: 1 MALRVVTRALGSLSLTPRIAAVPGPSLLPAAQVTNNVLLQLPSASMLLPSRPLLTSVALS 60
Query: 1043 ATSVSWKSRTKYTVMPVKMRKSGGRNHTXXXXXXXXXXXXKQRYRMIDFLRFRPEHESKP 1222
A VSWKSRTKYT MPVKMRKSGGRNHT KQRYRMIDFLRFRPE ESKP
Sbjct: 61 AKFVSWKSRTKYTTMPVKMRKSGGRNHTGRIQVHGIGGGHKQRYRMIDFLRFRPEQESKP 120
Query: 1223 GPFEEKVIAVRYDPCRSADIALVAGGNRKRWIIATENMKAGDTVLNSDHIGRMAVAAREG 1402
GPFEEKVI VRYDPCRSADIALVAGGNRKRWIIATENMKAGDT+LNSDHIGRMAVAAREG
Sbjct: 121 GPFEEKVIVVRYDPCRSADIALVAGGNRKRWIIATENMKAGDTILNSDHIGRMAVAAREG 180
Query: 1403 DAHPLGALPVGTLINNVESEPGRGAQYIRAAGTCGVLLRKVNGTAIIQLPSKRQMQVLET 1582
DAHPLGALPVGTLINNVESEPGRGAQYIRAAGTCGVLLRKVNGTAIIQLPSKRQMQVLET
Sbjct: 181 DAHPLGALPVGTLINNVESEPGRGAQYIRAAGTCGVLLRKVNGTAIIQLPSKRQMQVLET 240
Query: 1583 CIATVGRVSNVDHNKRVIGKAGRNRWLGKRPN 1678
C ATVGRVSNVDHNKRVIGKAGRNRWLGKRPN
Sbjct: 241 CTATVGRVSNVDHNKRVIGKAGRNRWLGKRPN 272
>ref|XP_002697294.1| PREDICTED: mitochondrial ribosomal protein L2 [Bos taurus].
Length = 306
Score = 473 bits (1217), Expect = e-133
Identities = 240/272 (88%), Positives = 244/272 (89%)
Frame = +2
Query: 863 MALRVLTRALSSLSLTPRIAVAPGLNLLPAVQVTNNVLLTLPSGLMSLPCRPILTSVALS 1042
MALRV+TRAL SLSLTPRIA PG +LLPA QVTNNVLL LPS M LP RP+LTSVALS
Sbjct: 1 MALRVVTRALGSLSLTPRIAAVPGPSLLPAAQVTNNVLLQLPSASMLLPSRPLLTSVALS 60
Query: 1043 ATSVSWKSRTKYTVMPVKMRKSGGRNHTXXXXXXXXXXXXKQRYRMIDFLRFRPEHESKP 1222
A VSWKSRTKYT MPVKMRKSGGRNHT KQRYRMIDFLRFRPE ESKP
Sbjct: 61 AKFVSWKSRTKYTTMPVKMRKSGGRNHTGRIQVHGIGGGHKQRYRMIDFLRFRPEQESKP 120
Query: 1223 GPFEEKVIAVRYDPCRSADIALVAGGNRKRWIIATENMKAGDTVLNSDHIGRMAVAAREG 1402
GPFEEKVI VRYDPCRSADIALVAGGNRKRWIIATENMKAGDT+LNSDHIGRMAVAAREG
Sbjct: 121 GPFEEKVIVVRYDPCRSADIALVAGGNRKRWIIATENMKAGDTILNSDHIGRMAVAAREG 180
Query: 1403 DAHPLGALPVGTLINNVESEPGRGAQYIRAAGTCGVLLRKVNGTAIIQLPSKRQMQVLET 1582
DAHPLGALPVGTLINNVESEPGRGAQYIRAAGTCGVLLRKVNGTAIIQLPSKRQMQVLET
Sbjct: 181 DAHPLGALPVGTLINNVESEPGRGAQYIRAAGTCGVLLRKVNGTAIIQLPSKRQMQVLET 240
Query: 1583 CIATVGRVSNVDHNKRVIGKAGRNRWLGKRPN 1678
C ATVGRVSNVDHNKRVIGKAGRNRWLGKRPN
Sbjct: 241 CTATVGRVSNVDHNKRVIGKAGRNRWLGKRPN 272
>ref|XP_001790570.1| PREDICTED: 39S ribosomal protein L2, mitochondrial [Bos taurus].
Length = 306
Score = 473 bits (1217), Expect = e-133
Identities = 240/272 (88%), Positives = 244/272 (89%)
Frame = +2
Query: 863 MALRVLTRALSSLSLTPRIAVAPGLNLLPAVQVTNNVLLTLPSGLMSLPCRPILTSVALS 1042
MALRV+TRAL SLSLTPRIA PG +LLPA QVTNNVLL LPS M LP RP+LTSVALS
Sbjct: 1 MALRVVTRALGSLSLTPRIAAVPGPSLLPAAQVTNNVLLQLPSASMLLPSRPLLTSVALS 60
Query: 1043 ATSVSWKSRTKYTVMPVKMRKSGGRNHTXXXXXXXXXXXXKQRYRMIDFLRFRPEHESKP 1222
A VSWKSRTKYT MPVKMRKSGGRNHT KQRYRMIDFLRFRPE ESKP
Sbjct: 61 AKFVSWKSRTKYTTMPVKMRKSGGRNHTGRIQVHGIGGGHKQRYRMIDFLRFRPEQESKP 120
Query: 1223 GPFEEKVIAVRYDPCRSADIALVAGGNRKRWIIATENMKAGDTVLNSDHIGRMAVAAREG 1402
GPFEEKVI VRYDPCRSADIALVAGGNRKRWIIATENMKAGDT+LNSDHIGRMAVAAREG
Sbjct: 121 GPFEEKVIVVRYDPCRSADIALVAGGNRKRWIIATENMKAGDTILNSDHIGRMAVAAREG 180
Query: 1403 DAHPLGALPVGTLINNVESEPGRGAQYIRAAGTCGVLLRKVNGTAIIQLPSKRQMQVLET 1582
DAHPLGALPVGTLINNVESEPGRGAQYIRAAGTCGVLLRKVNGTAIIQLPSKRQMQVLET
Sbjct: 181 DAHPLGALPVGTLINNVESEPGRGAQYIRAAGTCGVLLRKVNGTAIIQLPSKRQMQVLET 240
Query: 1583 CIATVGRVSNVDHNKRVIGKAGRNRWLGKRPN 1678
C ATVGRVSNVDHNKRVIGKAGRNRWLGKRPN
Sbjct: 241 CTATVGRVSNVDHNKRVIGKAGRNRWLGKRPN 272
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 71,152,300
Number of extensions: 2244671
Number of successful extensions: 9514
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 9440
Number of HSP's successfully gapped: 3
Length of query: 559
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 452
Effective length of database: 14,140,958
Effective search space: 6391713016
Effective search space used: 6391713016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-013985
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013985
(1678 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532143.2| PREDICTED: similar to mitochondrial ribosomal p... 450 e-126
>ref|XP_532143.2| PREDICTED: similar to mitochondrial ribosomal protein L2 [Canis
familiaris].
Length = 306
Score = 450 bits (1157), Expect = e-126
Identities = 226/272 (83%), Positives = 240/272 (88%)
Frame = +2
Query: 863 MALRVLTRALSSLSLTPRIAVAPGLNLLPAVQVTNNVLLTLPSGLMSLPCRPILTSVALS 1042
MALR LTRAL SLSLTP A A G LLPA QVT++ LL LPS + +PCRP+LTSVAL+
Sbjct: 1 MALRALTRALGSLSLTPPAAAALGPGLLPAAQVTSSTLLQLPSSSVLIPCRPVLTSVALN 60
Query: 1043 ATSVSWKSRTKYTVMPVKMRKSGGRNHTXXXXXXXXXXXXKQRYRMIDFLRFRPEHESKP 1222
A VSWKSRTKYT+ PVKMRKSGGRNHT KQRYRMIDFLRFRPE E+KP
Sbjct: 61 ANVVSWKSRTKYTITPVKMRKSGGRNHTGRIQVHGIGGGHKQRYRMIDFLRFRPELETKP 120
Query: 1223 GPFEEKVIAVRYDPCRSADIALVAGGNRKRWIIATENMKAGDTVLNSDHIGRMAVAAREG 1402
GPFEEKVI VRYDPCRSADIALVAGG+RKRWI+ATENM+AGD +LNSDHIGRMAVAAREG
Sbjct: 121 GPFEEKVIMVRYDPCRSADIALVAGGSRKRWIVATENMQAGDIILNSDHIGRMAVAAREG 180
Query: 1403 DAHPLGALPVGTLINNVESEPGRGAQYIRAAGTCGVLLRKVNGTAIIQLPSKRQMQVLET 1582
DAHPLGALPVGTLINNVESEPGRGAQYIRAAGTCGVLLRKVNGTAIIQLPSKRQMQVLET
Sbjct: 181 DAHPLGALPVGTLINNVESEPGRGAQYIRAAGTCGVLLRKVNGTAIIQLPSKRQMQVLET 240
Query: 1583 CIATVGRVSNVDHNKRVIGKAGRNRWLGKRPN 1678
C+ATVGRVSNVDHNKRVIGKAGRNRWLGKRP+
Sbjct: 241 CMATVGRVSNVDHNKRVIGKAGRNRWLGKRPS 272
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 74,240,484
Number of extensions: 2308826
Number of successful extensions: 9741
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9643
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 451
Effective length of database: 15,274,216
Effective search space: 6888671416
Effective search space used: 6888671416
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013985
(1678 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001171996.1| 39S ribosomal protein L2, mitochondrial [Sus... 512 e-145
>ref|NP_001171996.1| 39S ribosomal protein L2, mitochondrial [Sus scrofa].
Length = 306
Score = 512 bits (1318), Expect = e-145
Identities = 260/272 (95%), Positives = 260/272 (95%)
Frame = +2
Query: 863 MALRVLTRALSSLSLTPRIAVAPGLNLLPAVQVTNNVLLTLPSGLMSLPCRPILTSVALS 1042
MALRVLTRALSSLSLTPRIAVAPGLNLLPAVQVTNNVLLTLPSGLMSLPCRPILTSVALS
Sbjct: 1 MALRVLTRALSSLSLTPRIAVAPGLNLLPAVQVTNNVLLTLPSGLMSLPCRPILTSVALS 60
Query: 1043 ATSVSWKSRTKYTVMPVKMRKSGGRNHTXXXXXXXXXXXXKQRYRMIDFLRFRPEHESKP 1222
ATSVSWKSRTKYTVMPVKMRKSGGRNHT KQRYRMIDFLRFRPEHESKP
Sbjct: 61 ATSVSWKSRTKYTVMPVKMRKSGGRNHTGQIQVHGIGGGHKQRYRMIDFLRFRPEHESKP 120
Query: 1223 GPFEEKVIAVRYDPCRSADIALVAGGNRKRWIIATENMKAGDTVLNSDHIGRMAVAAREG 1402
GPFEEKVIAVRYDPCRSADIALVAGGNRKRWIIATENMKAGDTVLNSDHIGRMAVAAREG
Sbjct: 121 GPFEEKVIAVRYDPCRSADIALVAGGNRKRWIIATENMKAGDTVLNSDHIGRMAVAAREG 180
Query: 1403 DAHPLGALPVGTLINNVESEPGRGAQYIRAAGTCGVLLRKVNGTAIIQLPSKRQMQVLET 1582
DAHPLGALPVGTLINNVESEPGRGAQYIRAAGTCGVLLRKVNGTAIIQLPSKRQMQVLET
Sbjct: 181 DAHPLGALPVGTLINNVESEPGRGAQYIRAAGTCGVLLRKVNGTAIIQLPSKRQMQVLET 240
Query: 1583 CIATVGRVSNVDHNKRVIGKAGRNRWLGKRPN 1678
CIATVGRVSNVDHNKRVIGKAGRNRWLGKRPN
Sbjct: 241 CIATVGRVSNVDHNKRVIGKAGRNRWLGKRPN 272
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 45,977,202
Number of extensions: 1450343
Number of successful extensions: 6120
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6077
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 455
Effective length of database: 8,754,644
Effective search space: 3983363020
Effective search space used: 3983363020
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013985
(1678 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079578.1| 39S ribosomal protein L2, mitochondrial precurs... 407 e-113
>ref|NP_079578.1| 39S ribosomal protein L2, mitochondrial precursor [Mus musculus].
Length = 306
Score = 407 bits (1045), Expect = e-113
Identities = 210/272 (77%), Positives = 223/272 (81%)
Frame = +2
Query: 863 MALRVLTRALSSLSLTPRIAVAPGLNLLPAVQVTNNVLLTLPSGLMSLPCRPILTSVALS 1042
MAL LT AL SLSL A LLPA Q+ +NVLL LP L+S RP+ S S
Sbjct: 1 MALCALTSALRSLSLASAAITARVPTLLPAAQIQSNVLLQLPPALVSPSYRPVHMSADRS 60
Query: 1043 ATSVSWKSRTKYTVMPVKMRKSGGRNHTXXXXXXXXXXXXKQRYRMIDFLRFRPEHESKP 1222
A VSWKSRTKYTV PVKMRKSGGR+HT KQ YRMIDFLRFRPE E P
Sbjct: 61 AKFVSWKSRTKYTVKPVKMRKSGGRDHTGRIRVHGIGGGHKQNYRMIDFLRFRPEKEKAP 120
Query: 1223 GPFEEKVIAVRYDPCRSADIALVAGGNRKRWIIATENMKAGDTVLNSDHIGRMAVAAREG 1402
PFEEKV+ VRYDPCRSADIALVAGG+RKRWIIATENMKAGDT+LNS+HIGRMAVAA+EG
Sbjct: 121 EPFEEKVVVVRYDPCRSADIALVAGGSRKRWIIATENMKAGDTILNSNHIGRMAVAAQEG 180
Query: 1403 DAHPLGALPVGTLINNVESEPGRGAQYIRAAGTCGVLLRKVNGTAIIQLPSKRQMQVLET 1582
DAHPLGALPVGTLINNVESEPGRGAQYIRAAGTCGVLLRKVNGTAIIQLPSKRQMQVLE+
Sbjct: 181 DAHPLGALPVGTLINNVESEPGRGAQYIRAAGTCGVLLRKVNGTAIIQLPSKRQMQVLES 240
Query: 1583 CIATVGRVSNVDHNKRVIGKAGRNRWLGKRPN 1678
C ATVGRVSNV+HN+RVIGKAGRNRWLGKRPN
Sbjct: 241 CTATVGRVSNVNHNQRVIGKAGRNRWLGKRPN 272
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 61,008,347
Number of extensions: 1855284
Number of successful extensions: 7432
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7376
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 452
Effective length of database: 12,403,707
Effective search space: 5606475564
Effective search space used: 5606475564
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013985
(1678 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057034.2| 39S ribosomal protein L2, mitochondrial precurs... 439 e-123
>ref|NP_057034.2| 39S ribosomal protein L2, mitochondrial precursor [Homo sapiens].
Length = 305
Score = 439 bits (1128), Expect = e-123
Identities = 223/272 (81%), Positives = 236/272 (86%)
Frame = +2
Query: 863 MALRVLTRALSSLSLTPRIAVAPGLNLLPAVQVTNNVLLTLPSGLMSLPCRPILTSVALS 1042
MAL LTRAL SL+L P AP +L PA Q+ NN LL PS LM LPCRP+LTSVAL+
Sbjct: 1 MALCALTRALRSLNLAPPTVAAPAPSLFPAAQMMNNGLLQQPSALMLLPCRPVLTSVALN 60
Query: 1043 ATSVSWKSRTKYTVMPVKMRKSGGRNHTXXXXXXXXXXXXKQRYRMIDFLRFRPEHESKP 1222
A VSWKSRTKYT+ PVKMRKSGGR+HT KQRYRMIDFLRFRPE E+K
Sbjct: 61 ANFVSWKSRTKYTITPVKMRKSGGRDHTGRIRVHGIGGGHKQRYRMIDFLRFRPE-ETKS 119
Query: 1223 GPFEEKVIAVRYDPCRSADIALVAGGNRKRWIIATENMKAGDTVLNSDHIGRMAVAAREG 1402
GPFEEKVI VRYDPCRSADIALVAGG+RKRWIIATENM+AGDT+LNS+HIGRMAVAAREG
Sbjct: 120 GPFEEKVIQVRYDPCRSADIALVAGGSRKRWIIATENMQAGDTILNSNHIGRMAVAAREG 179
Query: 1403 DAHPLGALPVGTLINNVESEPGRGAQYIRAAGTCGVLLRKVNGTAIIQLPSKRQMQVLET 1582
DAHPLGALPVGTLINNVESEPGRGAQYIRAAGTCGVLLRKVNGTAIIQLPSKRQMQVLET
Sbjct: 180 DAHPLGALPVGTLINNVESEPGRGAQYIRAAGTCGVLLRKVNGTAIIQLPSKRQMQVLET 239
Query: 1583 CIATVGRVSNVDHNKRVIGKAGRNRWLGKRPN 1678
C+ATVGRVSNVDHNKRVIGKAGRNRWLGKRPN
Sbjct: 240 CVATVGRVSNVDHNKRVIGKAGRNRWLGKRPN 271
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 72,629,911
Number of extensions: 2255046
Number of successful extensions: 9239
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9164
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 451
Effective length of database: 14,737,052
Effective search space: 6646410452
Effective search space used: 6646410452
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013985
(1678 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 1461 0.0
>Sscrofa_Chr07
|| Length = 134764511
Score = 1461 bits (737), Expect = 0.0
Identities = 757/761 (99%), Gaps = 2/761 (0%)
Strand = Plus / Minus
Query: 1 ctcccctgcccacaggttttcaaagacgaccaaggtccctcctc-ttccagaaagccaac 59
||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 43621973 ctcccctgcccacaggtcttcaaagacgaccaaggtccctcctccttccagaa-gccaac 43621915
Query: 60 ctcccaccccaagcctgggagctattttctcccaagaagagagtgagatctgatctgaga 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43621914 ctcccaccccaagcctgggagctattttctcccaagaagagagtgagatctgatctgaga 43621855
Query: 120 cctgaggcaaggggcgtgtctgggaacgggtgaggaggaagacctggtcactctttgccc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43621854 cctgaggcaaggggcgtgtctgggaacgggtgaggaggaagacctggtcactctttgccc 43621795
Query: 180 agtcatctctatggctttgtctctatcatgatcacgtactaacatactaacaggctctga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43621794 agtcatctctatggctttgtctctatcatgatcacgtactaacatactaacaggctctga 43621735
Query: 240 gagtcagcgtagagtgcctcccaggtgcccgatgatgcagggaagaatggcaggtccgct 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43621734 gagtcagcgtagagtgcctcccaggtgcccgatgatgcagggaagaatggcaggtccgct 43621675
Query: 300 gagtggctgcgggatcacagaggatctcggcgctaggacttggtctccccggcctgggaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43621674 gagtggctgcgggatcacagaggatctcggcgctaggacttggtctccccggcctgggaa 43621615
Query: 360 tgcggtgaagtgtcccaggctgtcgacctgccctgaggcccagggtggggagagagtgcg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43621614 tgcggtgaagtgtcccaggctgtcgacctgccctgaggcccagggtggggagagagtgcg 43621555
Query: 420 atgggcaggagagaagggaggaggtgcggggtgatgacccaggtccgcgtcgcgggcgag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43621554 atgggcaggagagaagggaggaggtgcggggtgatgacccaggtccgcgtcgcgggcgag 43621495
Query: 480 gaggaccaggggccggattatcccgaggtcaaggagtcagttggtagcgcagggggcggg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43621494 gaggaccaggggccggattatcccgaggtcaaggagtcagttggtagcgcagggggcggg 43621435
Query: 540 gcggaccgtctgtccgtccgtctggacgccgagggggcgggaagaatcccggggggcgga 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43621434 gcggaccgtctgtccgtccgtctggacgccgagggggcgggaagaatcccggggggcgga 43621375
Query: 600 gtttttgaatccgactcgagttgtttgagactgctcggaagggctcatttcttaatctgt 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43621374 gtttttgaatccgactcgagttgtttgagactgctcggaagggctcatttcttaatctgt 43621315
Query: 660 ccgggagtgcaagaaagaggtagcaggatctcaactctctgccccagagtacccttaaag 719
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 43621314 ccgggagtgcaagaaagaggtagcaggatctcaactctctgccccaaagtacccttaaag 43621255
Query: 720 actcacccgcagtctgatgatctggctacagctcttgccgg 760
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 43621254 actcacccgcagtctgatgatctggctacagctcttgccgg 43621214
Score = 392 bits (198), Expect = e-106
Identities = 201/202 (99%)
Strand = Plus / Minus
Query: 759 ggatggagcgacggcacttggaccagttagcgtcatccagtagcgccagggttcctcgct 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43621020 ggatggagcgacggcacttggaccagttagcgtcatccagtagcgccagggttcctcgct 43620961
Query: 819 aaaggtgatggtggtgtgctgaacccaaccgagcctggccaatcatggccctgcgggtat 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43620960 aaaggtgatggtggtgtgctgaacccaaccgagcctggccaatcatggccctgcgggtat 43620901
Query: 879 tgacccgcgctcttagctctctgagcctgacgccccggatcgctgtcgcccccggcctaa 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43620900 tgacccgcgctcttagctctctgagcctgacgccccggatcgctgtcgcccccggcctaa 43620841
Query: 939 atctgctcccggccgtccaggt 960
| ||||||||||||||||||||
Sbjct: 43620840 acctgctcccggccgtccaggt 43620819
Score = 325 bits (164), Expect = 4e-86
Identities = 170/172 (98%)
Strand = Plus / Minus
Query: 957 aggtgacgaacaatgtcctccttacgctgccctctggcttgatgtcgcttccctgccgcc 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 43619205 aggtgacgaacaatgtcctccttacgctgccctctggcttgatgtcgcttccctgtcgcc 43619146
Query: 1017 caatccttacctctgtggcccttagtgctacgtctgtgtcctggaagagtcgtaccaagt 1076
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 43619145 caatccttacctctgtggcccttagtgctacgtctgtgtcgtggaagagtcgtaccaagt 43619086
Query: 1077 ataccgttatgccagtgaagatgaggaagtctgggggccgaaaccacacagg 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43619085 ataccgttatgccagtgaagatgaggaagtctgggggccgaaaccacacagg 43619034
Score = 283 bits (143), Expect = 2e-73
Identities = 146/147 (99%)
Strand = Plus / Minus
Query: 1124 acaggccaaatccaagtgcatggtattggtgggggccacaagcaacgttatcgcatgatt 1183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43618213 acaggccaaatccaagtgcatggtattggtgggggccacaagcaacgttatcgcatgatt 43618154
Query: 1184 gactttctgaggttccggccagagcatgaatccaagccaggaccctttgaggagaaggtc 1243
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 43618153 gactttctgaggttccggccggagcatgaatccaagccaggaccctttgaggagaaggtc 43618094
Query: 1244 attgctgtccgctatgatccctgtagg 1270
|||||||||||||||||||||||||||
Sbjct: 43618093 attgctgtccgctatgatccctgtagg 43618067
Score = 234 bits (118), Expect = 1e-58
Identities = 118/118 (100%)
Strand = Plus / Minus
Query: 1268 aggtcagcagacatagctctggttgctgggggcaaccggaaacgctggatcattgccaca 1327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43617957 aggtcagcagacatagctctggttgctgggggcaaccggaaacgctggatcattgccaca 43617898
Query: 1328 gagaacatgaaggccggagatacagtcttgaactctgaccacataggtcgaatggcag 1385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43617897 gagaacatgaaggccggagatacagtcttgaactctgaccacataggtcgaatggcag 43617840
Score = 228 bits (115), Expect = 8e-57
Identities = 115/115 (100%)
Strand = Plus / Minus
Query: 1383 cagttgctgctcgggaaggggatgcccatcctctgggagccttgccagtggggaccctca 1442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43617768 cagttgctgctcgggaaggggatgcccatcctctgggagccttgccagtggggaccctca 43617709
Query: 1443 tcaacaatgtggagagtgagccaggccggggggcccagtatatccgagctgcagg 1497
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43617708 tcaacaatgtggagagtgagccaggccggggggcccagtatatccgagctgcagg 43617654
Score = 220 bits (111), Expect = 2e-54
Identities = 111/111 (100%)
Strand = Plus / Minus
Query: 1568 caggtgctggaaacgtgcatagcaaccgtgggccgagtatccaatgttgatcataacaaa 1627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43616793 caggtgctggaaacgtgcatagcaaccgtgggccgagtatccaatgttgatcataacaaa 43616734
Query: 1628 cgggtcatcggcaaggccgggcggaaccgctggctgggaaagaggcctaac 1678
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43616733 cgggtcatcggcaaggccgggcggaaccgctggctgggaaagaggcctaac 43616683
Score = 159 bits (80), Expect = 6e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 1494 cagggacctgtggtgtgctgctacggaaggtgaatgggacagccatcatccagctgccct 1553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43617225 cagggacctgtggtgtgctgctacggaaggtgaatgggacagccatcatccagctgccct 43617166
Query: 1554 cgaaaaggcagatgcaggtg 1573
||||||||||||||||||||
Sbjct: 43617165 cgaaaaggcagatgcaggtg 43617146
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 42,855,238
Number of extensions: 317
Number of successful extensions: 317
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 316
Number of HSP's successfully gapped: 8
Length of query: 1678
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1656
Effective length of database: 2,808,408,574
Effective search space: 4650724598544
Effective search space used: 4650724598544
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)