Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013992
(1163 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003344.1| nuclear factor NF-kappa-B p105 subunit [Cani... 424 e-118
Alignment gi|XP_543988.2| PREDICTED: similar to Nuclear factor NF-kappa-B... 89 8e-18
Alignment gi|XP_862903.1| PREDICTED: similar to Nuclear factor NF-kappa-B... 89 8e-18
Alignment gi|XP_862878.1| PREDICTED: similar to Nuclear factor NF-kappa-B... 89 8e-18
Alignment gi|XP_850995.1| PREDICTED: similar to Nuclear factor NF-kappa-B... 89 8e-18
>ref|NP_001003344.1| nuclear factor NF-kappa-B p105 subunit [Canis lupus familiaris].
Length = 972
Score = 424 bits (1089), Expect = e-118
Identities = 216/271 (79%), Positives = 223/271 (82%)
Frame = +3
Query: 3 LLEGDAHVDSTTYDGTTPLHIAAGRGSTRLAALLKAAGADPLVENFEPLYXXXXXXXXXX 182
LLEGDAHVDSTTYDGTTPLHIAAGRGSTRLAALLKAAGADPLVENFEPLY
Sbjct: 702 LLEGDAHVDSTTYDGTTPLHIAAGRGSTRLAALLKAAGADPLVENFEPLYDLDDSWEKDG 761
Query: 183 XXXGVVPGTTPLDMATNWQVFDILNGKPYEPEFTSDDLLAQGDMKQLTEDTKLQLYKLLE 362
GVVPGTTPLDMATNWQVFDILNGKPYEPEFTSDDLLAQGDMKQLTED KLQLYKLLE
Sbjct: 762 EDEGVVPGTTPLDMATNWQVFDILNGKPYEPEFTSDDLLAQGDMKQLTEDAKLQLYKLLE 821
Query: 363 IPDPDKNWATLAQKLGLGILNNAFRLSAAPSKTLMDNYEVSGGTIKELVEALRQMGYTEA 542
PDPDKNWATLAQKLG GILNNAFRLS APSKTLMDNYEVSGGTIKELVEALRQMGYTEA
Sbjct: 822 TPDPDKNWATLAQKLGQGILNNAFRLSPAPSKTLMDNYEVSGGTIKELVEALRQMGYTEA 881
Query: 543 IDVIQAAFCTSGTAATSPVKTTSQAHSLPFSPASTRQQIDELRDDSICDSGVETSFRKXX 722
I+VIQAAFC TAA SP K Q SLP S ASTR +DE+RDDSICDSGVETSFR+
Sbjct: 882 IEVIQAAFCAPETAAPSPGKGAPQTLSLPLSSASTRSPVDEVRDDSICDSGVETSFRRLS 941
Query: 723 XXXXXXXXXXXXXXNKVPHDFGQEGPLEGKI 815
NK PH++GQEGP+EGKI
Sbjct: 942 FTESLTSGSSLLTLNKAPHEYGQEGPIEGKI 972
>ref|XP_543988.2| PREDICTED: similar to Nuclear factor NF-kappa-B p100/p49 subunits
(DNA-binding factor KBF2) (H2TF1) (Lymphocyte
translocation chromosome 10) (Oncogene Lyt-10) (Lyt10)
isoform 1 [Canis familiaris].
Length = 899
Score = 89.0 bits (219), Expect = 8e-18
Identities = 73/230 (31%), Positives = 110/230 (47%), Gaps = 13/230 (5%)
Frame = +3
Query: 18 AHVDSTTYDGTTPLHIAAGRGSTRLAALLKAAGADPLVENFEPLYXXXXXXXXXXXXXGV 197
A+V++ T+ G TPLH+AAG GS L LL AGAD EN EPL
Sbjct: 659 ANVNARTFAGNTPLHLAAGLGSPTLTRLLLKAGADIHAENEEPLCPLPSPPTSGSDSDSE 718
Query: 198 VP---------GTTPLDMATNWQVFDILNGKPYE---PEFTSDDLLAQGDMKQLTEDTKL 341
P G TPLD+ + +V +L + P T A D+ ED L
Sbjct: 719 GPERDARGSSRGHTPLDLTRSTKVKTLLLNAAQDTMAPPLTPPSP-AGPDLP--LEDAVL 775
Query: 342 Q-LYKLLEIPDPDKNWATLAQKLGLGILNNAFRLSAAPSKTLMDNYEVSGGTIKELVEAL 518
Q L LL+ P +WA LA++LGL L + +R +A+PS +L+ +Y+++GG + L+ AL
Sbjct: 776 QNLEHLLDGPGAQGSWAELAERLGLRSLVDTYRKTASPSGSLLRSYKLAGGDLAGLLCAL 835
Query: 519 RQMGYTEAIDVIQAAFCTSGTAATSPVKTTSQAHSLPFSPASTRQQIDEL 668
MG E + +++ G A + +T + S Q+ ++L
Sbjct: 836 SDMGLEEGVRLLR------GPEARDKLPSTEVKEDSAYGSQSVEQEAEKL 879
>ref|XP_862903.1| PREDICTED: similar to Nuclear factor NF-kappa-B p100/p49 subunits
(DNA-binding factor KBF2) (H2TF1) (Lymphocyte
translocation chromosome 10) (Oncogene Lyt-10) (Lyt10)
isoform 5 [Canis familiaris].
Length = 889
Score = 89.0 bits (219), Expect = 8e-18
Identities = 73/230 (31%), Positives = 110/230 (47%), Gaps = 13/230 (5%)
Frame = +3
Query: 18 AHVDSTTYDGTTPLHIAAGRGSTRLAALLKAAGADPLVENFEPLYXXXXXXXXXXXXXGV 197
A+V++ T+ G TPLH+AAG GS L LL AGAD EN EPL
Sbjct: 649 ANVNARTFAGNTPLHLAAGLGSPTLTRLLLKAGADIHAENEEPLCPLPSPPTSGSDSDSE 708
Query: 198 VP---------GTTPLDMATNWQVFDILNGKPYE---PEFTSDDLLAQGDMKQLTEDTKL 341
P G TPLD+ + +V +L + P T A D+ ED L
Sbjct: 709 GPERDARGSSRGHTPLDLTRSTKVKTLLLNAAQDTMAPPLTPPSP-AGPDLP--LEDAVL 765
Query: 342 Q-LYKLLEIPDPDKNWATLAQKLGLGILNNAFRLSAAPSKTLMDNYEVSGGTIKELVEAL 518
Q L LL+ P +WA LA++LGL L + +R +A+PS +L+ +Y+++GG + L+ AL
Sbjct: 766 QNLEHLLDGPGAQGSWAELAERLGLRSLVDTYRKTASPSGSLLRSYKLAGGDLAGLLCAL 825
Query: 519 RQMGYTEAIDVIQAAFCTSGTAATSPVKTTSQAHSLPFSPASTRQQIDEL 668
MG E + +++ G A + +T + S Q+ ++L
Sbjct: 826 SDMGLEEGVRLLR------GPEARDKLPSTEVKEDSAYGSQSVEQEAEKL 869
>ref|XP_862878.1| PREDICTED: similar to Nuclear factor NF-kappa-B p100/p49 subunits
(DNA-binding factor KBF2) (H2TF1) (Lymphocyte
translocation chromosome 10) (Oncogene Lyt-10) (Lyt10)
isoform 4 [Canis familiaris].
Length = 904
Score = 89.0 bits (219), Expect = 8e-18
Identities = 73/230 (31%), Positives = 110/230 (47%), Gaps = 13/230 (5%)
Frame = +3
Query: 18 AHVDSTTYDGTTPLHIAAGRGSTRLAALLKAAGADPLVENFEPLYXXXXXXXXXXXXXGV 197
A+V++ T+ G TPLH+AAG GS L LL AGAD EN EPL
Sbjct: 664 ANVNARTFAGNTPLHLAAGLGSPTLTRLLLKAGADIHAENEEPLCPLPSPPTSGSDSDSE 723
Query: 198 VP---------GTTPLDMATNWQVFDILNGKPYE---PEFTSDDLLAQGDMKQLTEDTKL 341
P G TPLD+ + +V +L + P T A D+ ED L
Sbjct: 724 GPERDARGSSRGHTPLDLTRSTKVKTLLLNAAQDTMAPPLTPPSP-AGPDLP--LEDAVL 780
Query: 342 Q-LYKLLEIPDPDKNWATLAQKLGLGILNNAFRLSAAPSKTLMDNYEVSGGTIKELVEAL 518
Q L LL+ P +WA LA++LGL L + +R +A+PS +L+ +Y+++GG + L+ AL
Sbjct: 781 QNLEHLLDGPGAQGSWAELAERLGLRSLVDTYRKTASPSGSLLRSYKLAGGDLAGLLCAL 840
Query: 519 RQMGYTEAIDVIQAAFCTSGTAATSPVKTTSQAHSLPFSPASTRQQIDEL 668
MG E + +++ G A + +T + S Q+ ++L
Sbjct: 841 SDMGLEEGVRLLR------GPEARDKLPSTEVKEDSAYGSQSVEQEAEKL 884
>ref|XP_850995.1| PREDICTED: similar to Nuclear factor NF-kappa-B p100/p49 subunits
(DNA-binding factor KBF2) (H2TF1) (Lymphocyte
translocation chromosome 10) (Oncogene Lyt-10) (Lyt10)
isoform 3 [Canis familiaris].
Length = 899
Score = 89.0 bits (219), Expect = 8e-18
Identities = 73/230 (31%), Positives = 110/230 (47%), Gaps = 13/230 (5%)
Frame = +3
Query: 18 AHVDSTTYDGTTPLHIAAGRGSTRLAALLKAAGADPLVENFEPLYXXXXXXXXXXXXXGV 197
A+V++ T+ G TPLH+AAG GS L LL AGAD EN EPL
Sbjct: 659 ANVNARTFAGNTPLHLAAGLGSPTLTRLLLKAGADIHAENEEPLCPLPSPPTSGSDSDSE 718
Query: 198 VP---------GTTPLDMATNWQVFDILNGKPYE---PEFTSDDLLAQGDMKQLTEDTKL 341
P G TPLD+ + +V +L + P T A D+ ED L
Sbjct: 719 GPERDARGSSRGHTPLDLTRSTKVKTLLLNAAQDTMAPPLTPPSP-AGPDLP--LEDAVL 775
Query: 342 Q-LYKLLEIPDPDKNWATLAQKLGLGILNNAFRLSAAPSKTLMDNYEVSGGTIKELVEAL 518
Q L LL+ P +WA LA++LGL L + +R +A+PS +L+ +Y+++GG + L+ AL
Sbjct: 776 QNLEHLLDGPGAQGSWAELAERLGLRSLVDTYRKTASPSGSLLRSYKLAGGDLAGLLCAL 835
Query: 519 RQMGYTEAIDVIQAAFCTSGTAATSPVKTTSQAHSLPFSPASTRQQIDEL 668
MG E + +++ G A + +T + S Q+ ++L
Sbjct: 836 SDMGLEEGVRLLR------GPEARDKLPSTEVKEDSAYGSQSVEQEAEKL 879
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,814,132
Number of extensions: 1201200
Number of successful extensions: 4451
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4433
Number of HSP's successfully gapped: 5
Length of query: 387
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 282
Effective length of database: 15,374,224
Effective search space: 4335531168
Effective search space used: 4335531168
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013992
(1163 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069877.1| nuclear factor NF-kappa-B p105 subunit [Bos ... 446 e-125
Alignment gi|NP_001095571.1| nuclear factor NF-kappa-B p100 subunit [Bos ... 88 1e-17
>ref|NP_001069877.1| nuclear factor NF-kappa-B p105 subunit [Bos taurus].
Length = 969
Score = 446 bits (1146), Expect = e-125
Identities = 228/270 (84%), Positives = 233/270 (86%)
Frame = +3
Query: 6 LEGDAHVDSTTYDGTTPLHIAAGRGSTRLAALLKAAGADPLVENFEPLYXXXXXXXXXXX 185
LEGDAHVDSTTYDGTTPLHIAAGRGSTRLAALLKAAGADPLVENFEPLY
Sbjct: 703 LEGDAHVDSTTYDGTTPLHIAAGRGSTRLAALLKAAGADPLVENFEPLYDLDDSWDEDGE 762
Query: 186 XXGVVPGTTPLDMATNWQVFDILNGKPYEPEFTSDDLLAQGDMKQLTEDTKLQLYKLLEI 365
GVVPGTTPLDMA++WQVFDILNGKPYEPEFTSDDLLAQGDMKQLTED KLQLYKLLEI
Sbjct: 763 DEGVVPGTTPLDMASSWQVFDILNGKPYEPEFTSDDLLAQGDMKQLTEDAKLQLYKLLEI 822
Query: 366 PDPDKNWATLAQKLGLGILNNAFRLSAAPSKTLMDNYEVSGGTIKELVEALRQMGYTEAI 545
PDPDKNWATLAQKLGLGILNNAFRLS APSKTLMDNYEVSGGTIKELVEALRQMGYTEAI
Sbjct: 823 PDPDKNWATLAQKLGLGILNNAFRLSPAPSKTLMDNYEVSGGTIKELVEALRQMGYTEAI 882
Query: 546 DVIQAAFCTSGTAATSPVKTTSQAHSLPFSPASTRQQIDELRDDSICDSGVETSFRKXXX 725
DVIQAAFC TA TSP KTTSQAHSLPF+PASTR QIDELRDDSICDSGVETSFRK
Sbjct: 883 DVIQAAFC---TADTSPAKTTSQAHSLPFAPASTRPQIDELRDDSICDSGVETSFRKLSF 939
Query: 726 XXXXXXXXXXXXXNKVPHDFGQEGPLEGKI 815
NKVPHD+GQEGP+EGKI
Sbjct: 940 TESLTSGTSLLTLNKVPHDYGQEGPIEGKI 969
>ref|NP_001095571.1| nuclear factor NF-kappa-B p100 subunit [Bos taurus].
Length = 900
Score = 88.2 bits (217), Expect = 1e-17
Identities = 68/227 (29%), Positives = 105/227 (46%), Gaps = 10/227 (4%)
Frame = +3
Query: 18 AHVDSTTYDGTTPLHIAAGRGSTRLAALLKAAGADPLVENFEPLYXXXXXXXXXXXXXGV 197
A+V++ T+ G TPLH+AAG GS L LL AGAD EN EPL
Sbjct: 660 ANVNARTFAGNTPLHLAAGLGSPTLTRLLLKAGADVHAENEEPLCPLPSPPTSGSDSDSE 719
Query: 198 VP---------GTTPLDMATNWQVFDILNGKPYEPEFTSDDLLAQGDMKQLTEDTKLQ-L 347
P G TPLD+ + +V +L + + + EDT LQ L
Sbjct: 720 SPERDTRGSFRGHTPLDLTRSSKVKTLLLNAAQDTMAPPLTPPSPAGPEIPLEDTVLQNL 779
Query: 348 YKLLEIPDPDKNWATLAQKLGLGILNNAFRLSAAPSKTLMDNYEVSGGTIKELVEALRQM 527
LL+ P +W LA++LGL L + +R +A+PS +L+ +Y+++GG L+ AL M
Sbjct: 780 EHLLDGPGAQGSWVELAERLGLRSLVDTYRRTASPSGSLLRSYQLAGGDWTGLLNALSDM 839
Query: 528 GYTEAIDVIQAAFCTSGTAATSPVKTTSQAHSLPFSPASTRQQIDEL 668
G E + +++ G + +T + S Q+ ++L
Sbjct: 840 GLEEGVRLLK------GPETQEKLPSTEVKEDSAYGSQSVEQETEKL 880
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,023,812
Number of extensions: 1175735
Number of successful extensions: 4052
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4041
Number of HSP's successfully gapped: 2
Length of query: 387
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 283
Effective length of database: 14,240,222
Effective search space: 4029982826
Effective search space used: 4029982826
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013992
(1163 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001041697.1| nuclear factor NF-kappa-B p105 subunit [Sus ... 475 e-134
>ref|NP_001041697.1| nuclear factor NF-kappa-B p105 subunit [Sus scrofa].
Length = 959
Score = 475 bits (1222), Expect = e-134
Identities = 242/271 (89%), Positives = 242/271 (89%)
Frame = +3
Query: 3 LLEGDAHVDSTTYDGTTPLHIAAGRGSTRLAALLKAAGADPLVENFEPLYXXXXXXXXXX 182
LLEGDAHVDSTTYDGTTPLHIAAGRGSTRLAALLKAAGADPLVENFEPLY
Sbjct: 689 LLEGDAHVDSTTYDGTTPLHIAAGRGSTRLAALLKAAGADPLVENFEPLYDLDDSWDEDG 748
Query: 183 XXXGVVPGTTPLDMATNWQVFDILNGKPYEPEFTSDDLLAQGDMKQLTEDTKLQLYKLLE 362
GVVPGTTPLDMATNWQVFDILNGKPYEPEFTSDDLLAQGDMKQLTEDTKLQLYKLLE
Sbjct: 749 EDEGVVPGTTPLDMATNWQVFDILNGKPYEPEFTSDDLLAQGDMKQLTEDTKLQLYKLLE 808
Query: 363 IPDPDKNWATLAQKLGLGILNNAFRLSAAPSKTLMDNYEVSGGTIKELVEALRQMGYTEA 542
IPDPDKNWATLAQKLGLGILNNAFRLSAAPSKTLMDNYEVSGGTIKELVEALRQMGYTEA
Sbjct: 809 IPDPDKNWATLAQKLGLGILNNAFRLSAAPSKTLMDNYEVSGGTIKELVEALRQMGYTEA 868
Query: 543 IDVIQAAFCTSGTAATSPVKTTSQAHSLPFSPASTRQQIDELRDDSICDSGVETSFRKXX 722
IDVIQAAFCTSGTAATSPVKTTSQAHSLPFSPASTRQQIDELRDDSICDSGVETSFRK
Sbjct: 869 IDVIQAAFCTSGTAATSPVKTTSQAHSLPFSPASTRQQIDELRDDSICDSGVETSFRKLS 928
Query: 723 XXXXXXXXXXXXXXNKVPHDFGQEGPLEGKI 815
NKVPHDFGQEGPLEGKI
Sbjct: 929 FTESLTSSSSLLTLNKVPHDFGQEGPLEGKI 959
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,376,700
Number of extensions: 756168
Number of successful extensions: 2545
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2537
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 286
Effective length of database: 8,829,335
Effective search space: 2525189810
Effective search space used: 2525189810
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013992
(1163 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032715.2| nuclear factor NF-kappa-B p105 subunit [Mus mus... 414 e-116
Alignment gi|NP_001170841.1| nuclear factor NF-kappa-B p100 subunit isofo... 92 8e-19
Alignment gi|NP_001170840.1| nuclear factor NF-kappa-B p100 subunit isofo... 90 3e-18
Alignment gi|NP_062281.1| nuclear factor NF-kappa-B p100 subunit isoform ... 90 3e-18
>ref|NP_032715.2| nuclear factor NF-kappa-B p105 subunit [Mus musculus].
Length = 971
Score = 414 bits (1065), Expect = e-116
Identities = 214/272 (78%), Positives = 226/272 (83%), Gaps = 1/272 (0%)
Frame = +3
Query: 3 LLEGDAHVDSTTYDGTTPLHIAAGRGSTRLAALLKAAGADPLVENFEPLYXXXXXXXXXX 182
LLEGDAHVDSTTYDGTTPLHIAAGRGSTRLAALLKAAGADPLVENFEPLY
Sbjct: 701 LLEGDAHVDSTTYDGTTPLHIAAGRGSTRLAALLKAAGADPLVENFEPLYDLDDSWEKAG 760
Query: 183 XXXGVVPGTTPLDMATNWQVFDILNGKPYEPEFTSDDLLAQGDMKQLTEDTKLQLYKLLE 362
GVVPGTTPLDMA NWQVFDILNGKPYEP FTSDD+L QGDMKQLTEDT+LQL KLLE
Sbjct: 761 EDEGVVPGTTPLDMAANWQVFDILNGKPYEPVFTSDDILPQGDMKQLTEDTRLQLCKLLE 820
Query: 363 IPDPDKNWATLAQKLGLGILNNAFRLSAAPSKTLMDNYEVSGGTIKELVEALRQMGYTEA 542
IPDPDKNWATLAQKLGLGILNNAFRLS APSKTLMDNYEVSGGTIKEL+EAL+QMGYTEA
Sbjct: 821 IPDPDKNWATLAQKLGLGILNNAFRLSPAPSKTLMDNYEVSGGTIKELMEALQQMGYTEA 880
Query: 543 IDVIQAAFCTSGTAATSPVKTTSQAHSLPFSPASTRQQIDELRD-DSICDSGVETSFRKX 719
I+VIQAAF T T A+SPV TT+Q H LP S +STRQ IDELRD DS+CDSGVETSFRK
Sbjct: 881 IEVIQAAFRTPATTASSPV-TTAQVHCLPLSSSSTRQHIDELRDSDSVCDSGVETSFRKL 939
Query: 720 XXXXXXXXXXXXXXXNKVPHDFGQEGPLEGKI 815
NK+PH +GQEGP+EGKI
Sbjct: 940 SFTESLTGDSPLLSLNKMPHGYGQEGPIEGKI 971
>ref|NP_001170841.1| nuclear factor NF-kappa-B p100 subunit isoform b [Mus musculus].
Length = 900
Score = 92.0 bits (227), Expect = 8e-19
Identities = 71/233 (30%), Positives = 110/233 (47%), Gaps = 16/233 (6%)
Frame = +3
Query: 18 AHVDSTTYDGTTPLHIAAGRGSTRLAALLKAAGADPLVENFEPLYXXXXXXXXXXXXXGV 197
A+V++ T+ G TPLH+AAG GS L LL AGAD EN EPL
Sbjct: 659 ANVNARTFAGNTPLHLAAGLGSPTLTRLLLKAGADIHAENEEPLCPLPSPSTSGSDSDSE 718
Query: 198 VP---------GTTPLDMATNWQVFDIL-------NGKPYEPEFTSDDLLAQGDMKQLTE 329
P G TPLD+ + +V +L P P + L+ GD
Sbjct: 719 GPERDTQRNFRGHTPLDLTCSTKVKTLLLNAAQNTTEPPLAPPSPAGPGLSLGDA----- 773
Query: 330 DTKLQLYKLLEIPDPDKNWATLAQKLGLGILNNAFRLSAAPSKTLMDNYEVSGGTIKELV 509
L +LL+ P+ +WA LA++LGL L + +R + +PS +L+ +Y+++GG + L+
Sbjct: 774 -ALQNLEQLLDGPEAQGSWAELAERLGLRSLVDTYRKTPSPSGSLLRSYKLAGGDLVGLL 832
Query: 510 EALRQMGYTEAIDVIQAAFCTSGTAATSPVKTTSQAHSLPFSPASTRQQIDEL 668
EAL MG E + +++ +T+ VK S + S Q+ ++L
Sbjct: 833 EALSDMGLHEGVRLLKGPETRDKLPSTAEVKEDS-----AYGSQSVEQEAEKL 880
>ref|NP_001170840.1| nuclear factor NF-kappa-B p100 subunit isoform a [Mus musculus].
Length = 899
Score = 90.1 bits (222), Expect = 3e-18
Identities = 69/233 (29%), Positives = 108/233 (46%), Gaps = 16/233 (6%)
Frame = +3
Query: 18 AHVDSTTYDGTTPLHIAAGRGSTRLAALLKAAGADPLVENFEPLYXXXXXXXXXXXXXGV 197
A+V++ T+ G TPLH+AAG GS L LL AGAD EN EPL
Sbjct: 659 ANVNARTFAGNTPLHLAAGLGSPTLTRLLLKAGADIHAENEEPLCPLPSPSTSGSDSDSE 718
Query: 198 VP---------GTTPLDMATNWQVFDIL-------NGKPYEPEFTSDDLLAQGDMKQLTE 329
P G TPLD+ + +V +L P P + L+ GD
Sbjct: 719 GPERDTQRNFRGHTPLDLTCSTKVKTLLLNAAQNTTEPPLAPPSPAGPGLSLGDA----- 773
Query: 330 DTKLQLYKLLEIPDPDKNWATLAQKLGLGILNNAFRLSAAPSKTLMDNYEVSGGTIKELV 509
L +LL+ P+ +WA LA++LGL L + +R + +PS +L+ +Y+++GG + L+
Sbjct: 774 -ALQNLEQLLDGPEAQGSWAELAERLGLRSLVDTYRKTPSPSGSLLRSYKLAGGDLVGLL 832
Query: 510 EALRQMGYTEAIDVIQAAFCTSGTAATSPVKTTSQAHSLPFSPASTRQQIDEL 668
EAL MG E + +++ G + +T + S Q+ ++L
Sbjct: 833 EALSDMGLHEGVRLLK------GPETRDKLPSTEVKEDSAYGSQSVEQEAEKL 879
>ref|NP_062281.1| nuclear factor NF-kappa-B p100 subunit isoform a [Mus musculus].
Length = 899
Score = 90.1 bits (222), Expect = 3e-18
Identities = 69/233 (29%), Positives = 108/233 (46%), Gaps = 16/233 (6%)
Frame = +3
Query: 18 AHVDSTTYDGTTPLHIAAGRGSTRLAALLKAAGADPLVENFEPLYXXXXXXXXXXXXXGV 197
A+V++ T+ G TPLH+AAG GS L LL AGAD EN EPL
Sbjct: 659 ANVNARTFAGNTPLHLAAGLGSPTLTRLLLKAGADIHAENEEPLCPLPSPSTSGSDSDSE 718
Query: 198 VP---------GTTPLDMATNWQVFDIL-------NGKPYEPEFTSDDLLAQGDMKQLTE 329
P G TPLD+ + +V +L P P + L+ GD
Sbjct: 719 GPERDTQRNFRGHTPLDLTCSTKVKTLLLNAAQNTTEPPLAPPSPAGPGLSLGDA----- 773
Query: 330 DTKLQLYKLLEIPDPDKNWATLAQKLGLGILNNAFRLSAAPSKTLMDNYEVSGGTIKELV 509
L +LL+ P+ +WA LA++LGL L + +R + +PS +L+ +Y+++GG + L+
Sbjct: 774 -ALQNLEQLLDGPEAQGSWAELAERLGLRSLVDTYRKTPSPSGSLLRSYKLAGGDLVGLL 832
Query: 510 EALRQMGYTEAIDVIQAAFCTSGTAATSPVKTTSQAHSLPFSPASTRQQIDEL 668
EAL MG E + +++ G + +T + S Q+ ++L
Sbjct: 833 EALSDMGLHEGVRLLK------GPETRDKLPSTEVKEDSAYGSQSVEQEAEKL 879
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,114,606
Number of extensions: 994254
Number of successful extensions: 3745
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3721
Number of HSP's successfully gapped: 4
Length of query: 387
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 284
Effective length of database: 12,523,851
Effective search space: 3556773684
Effective search space used: 3556773684
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013992
(1163 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001158884.1| nuclear factor NF-kappa-B p105 subunit isofo... 429 e-120
Alignment gi|NP_003989.2| nuclear factor NF-kappa-B p105 subunit isoform ... 429 e-120
Alignment gi|NP_001070962.1| nuclear factor NF-kappa-B p100 subunit isofo... 95 1e-19
Alignment gi|NP_001070961.1| nuclear factor NF-kappa-B p100 subunit isofo... 93 4e-19
Alignment gi|NP_002493.3| nuclear factor NF-kappa-B p100 subunit isoform ... 93 4e-19
>ref|NP_001158884.1| nuclear factor NF-kappa-B p105 subunit isoform 2 [Homo sapiens].
Length = 968
Score = 429 bits (1103), Expect = e-120
Identities = 222/272 (81%), Positives = 230/272 (84%), Gaps = 1/272 (0%)
Frame = +3
Query: 3 LLEGDAHVDSTTYDGTTPLHIAAGRGSTRLAALLKAAGADPLVENFEPLYXXXXXXXXXX 182
LLEGDAHVDSTTYDGTTPLHIAAGRGSTRLAALLKAAGADPLVENFEPLY
Sbjct: 705 LLEGDAHVDSTTYDGTTPLHIAAGRGSTRLAALLKAAGADPLVENFEPLYDLDDSWENAG 764
Query: 183 XXXGVVPGTTPLDMATNWQVFDILNGKPYEPEFTSDDLLAQGDMKQLTEDTKLQLYKLLE 362
GVVPGTTPLDMAT+WQVFDILNGKPYEPEFTSDDLLAQGDMKQL ED KLQLYKLLE
Sbjct: 765 EDEGVVPGTTPLDMATSWQVFDILNGKPYEPEFTSDDLLAQGDMKQLAEDVKLQLYKLLE 824
Query: 363 IPDPDKNWATLAQKLGLGILNNAFRLSAAPSKTLMDNYEVSGGTIKELVEALRQMGYTEA 542
IPDPDKNWATLAQKLGLGILNNAFRLS APSKTLMDNYEVSGGT++ELVEALRQMGYTEA
Sbjct: 825 IPDPDKNWATLAQKLGLGILNNAFRLSPAPSKTLMDNYEVSGGTVRELVEALRQMGYTEA 884
Query: 543 IDVIQAAFCTSGTAATSPVKTTSQAHSLPFSPASTRQQIDELRD-DSICDSGVETSFRKX 719
I+VIQ AA+SPVKTTSQAHSLP SPASTRQQIDELRD DS+CDSGVETSFRK
Sbjct: 885 IEVIQ--------AASSPVKTTSQAHSLPLSPASTRQQIDELRDSDSVCDSGVETSFRKL 936
Query: 720 XXXXXXXXXXXXXXXNKVPHDFGQEGPLEGKI 815
NK+PHD+GQEGPLEGKI
Sbjct: 937 SFTESLTSGASLLTLNKMPHDYGQEGPLEGKI 968
>ref|NP_003989.2| nuclear factor NF-kappa-B p105 subunit isoform 1 [Homo sapiens].
Length = 969
Score = 429 bits (1103), Expect = e-120
Identities = 222/272 (81%), Positives = 230/272 (84%), Gaps = 1/272 (0%)
Frame = +3
Query: 3 LLEGDAHVDSTTYDGTTPLHIAAGRGSTRLAALLKAAGADPLVENFEPLYXXXXXXXXXX 182
LLEGDAHVDSTTYDGTTPLHIAAGRGSTRLAALLKAAGADPLVENFEPLY
Sbjct: 706 LLEGDAHVDSTTYDGTTPLHIAAGRGSTRLAALLKAAGADPLVENFEPLYDLDDSWENAG 765
Query: 183 XXXGVVPGTTPLDMATNWQVFDILNGKPYEPEFTSDDLLAQGDMKQLTEDTKLQLYKLLE 362
GVVPGTTPLDMAT+WQVFDILNGKPYEPEFTSDDLLAQGDMKQL ED KLQLYKLLE
Sbjct: 766 EDEGVVPGTTPLDMATSWQVFDILNGKPYEPEFTSDDLLAQGDMKQLAEDVKLQLYKLLE 825
Query: 363 IPDPDKNWATLAQKLGLGILNNAFRLSAAPSKTLMDNYEVSGGTIKELVEALRQMGYTEA 542
IPDPDKNWATLAQKLGLGILNNAFRLS APSKTLMDNYEVSGGT++ELVEALRQMGYTEA
Sbjct: 826 IPDPDKNWATLAQKLGLGILNNAFRLSPAPSKTLMDNYEVSGGTVRELVEALRQMGYTEA 885
Query: 543 IDVIQAAFCTSGTAATSPVKTTSQAHSLPFSPASTRQQIDELRD-DSICDSGVETSFRKX 719
I+VIQ AA+SPVKTTSQAHSLP SPASTRQQIDELRD DS+CDSGVETSFRK
Sbjct: 886 IEVIQ--------AASSPVKTTSQAHSLPLSPASTRQQIDELRDSDSVCDSGVETSFRKL 937
Query: 720 XXXXXXXXXXXXXXXNKVPHDFGQEGPLEGKI 815
NK+PHD+GQEGPLEGKI
Sbjct: 938 SFTESLTSGASLLTLNKMPHDYGQEGPLEGKI 969
>ref|NP_001070962.1| nuclear factor NF-kappa-B p100 subunit isoform a [Homo sapiens].
Length = 900
Score = 95.1 bits (235), Expect = 1e-19
Identities = 74/230 (32%), Positives = 110/230 (47%), Gaps = 13/230 (5%)
Frame = +3
Query: 18 AHVDSTTYDGTTPLHIAAGRGSTRLAALLKAAGADPLVENFEPLYXXXXXXXXXXXXXGV 197
A+V++ T+ G TPLH+AAG G L LL AGAD EN EPL
Sbjct: 659 ANVNARTFAGNTPLHLAAGLGYPTLTRLLLKAGADIHAENEEPLCPLPSPPTSDSDSDSE 718
Query: 198 VP---------GTTPLDMATNWQVFDILNG---KPYEPEFTSDDLLAQGDMKQLTEDTKL 341
P G TPLD+ + +V +L EP T G DT L
Sbjct: 719 GPEKDTRSSFRGHTPLDLTCSTKVKTLLLNAAQNTMEPPLTPPSPAGPG---LSLGDTAL 775
Query: 342 Q-LYKLLEIPDPDKNWATLAQKLGLGILNNAFRLSAAPSKTLMDNYEVSGGTIKELVEAL 518
Q L +LL+ P+ +WA LA++LGL L + +R + +PS +L+ +YE++GG + L+EAL
Sbjct: 776 QNLEQLLDGPEAQGSWAELAERLGLRSLVDTYRQTTSPSGSLLRSYELAGGDLAGLLEAL 835
Query: 519 RQMGYTEAIDVIQAAFCTSGTAATSPVKTTSQAHSLPFSPASTRQQIDEL 668
MG E + +++ +T+ VK S + S Q+ ++L
Sbjct: 836 SDMGLEEGVRLLRGPETRDKLPSTAEVKEDS-----AYGSQSVEQEAEKL 880
>ref|NP_001070961.1| nuclear factor NF-kappa-B p100 subunit isoform b [Homo sapiens].
Length = 899
Score = 93.2 bits (230), Expect = 4e-19
Identities = 72/230 (31%), Positives = 108/230 (46%), Gaps = 13/230 (5%)
Frame = +3
Query: 18 AHVDSTTYDGTTPLHIAAGRGSTRLAALLKAAGADPLVENFEPLYXXXXXXXXXXXXXGV 197
A+V++ T+ G TPLH+AAG G L LL AGAD EN EPL
Sbjct: 659 ANVNARTFAGNTPLHLAAGLGYPTLTRLLLKAGADIHAENEEPLCPLPSPPTSDSDSDSE 718
Query: 198 VP---------GTTPLDMATNWQVFDILNG---KPYEPEFTSDDLLAQGDMKQLTEDTKL 341
P G TPLD+ + +V +L EP T G DT L
Sbjct: 719 GPEKDTRSSFRGHTPLDLTCSTKVKTLLLNAAQNTMEPPLTPPSPAGPG---LSLGDTAL 775
Query: 342 Q-LYKLLEIPDPDKNWATLAQKLGLGILNNAFRLSAAPSKTLMDNYEVSGGTIKELVEAL 518
Q L +LL+ P+ +WA LA++LGL L + +R + +PS +L+ +YE++GG + L+EAL
Sbjct: 776 QNLEQLLDGPEAQGSWAELAERLGLRSLVDTYRQTTSPSGSLLRSYELAGGDLAGLLEAL 835
Query: 519 RQMGYTEAIDVIQAAFCTSGTAATSPVKTTSQAHSLPFSPASTRQQIDEL 668
MG E + +++ G + +T + S Q+ ++L
Sbjct: 836 SDMGLEEGVRLLR------GPETRDKLPSTEVKEDSAYGSQSVEQEAEKL 879
>ref|NP_002493.3| nuclear factor NF-kappa-B p100 subunit isoform b [Homo sapiens].
Length = 899
Score = 93.2 bits (230), Expect = 4e-19
Identities = 72/230 (31%), Positives = 108/230 (46%), Gaps = 13/230 (5%)
Frame = +3
Query: 18 AHVDSTTYDGTTPLHIAAGRGSTRLAALLKAAGADPLVENFEPLYXXXXXXXXXXXXXGV 197
A+V++ T+ G TPLH+AAG G L LL AGAD EN EPL
Sbjct: 659 ANVNARTFAGNTPLHLAAGLGYPTLTRLLLKAGADIHAENEEPLCPLPSPPTSDSDSDSE 718
Query: 198 VP---------GTTPLDMATNWQVFDILNG---KPYEPEFTSDDLLAQGDMKQLTEDTKL 341
P G TPLD+ + +V +L EP T G DT L
Sbjct: 719 GPEKDTRSSFRGHTPLDLTCSTKVKTLLLNAAQNTMEPPLTPPSPAGPG---LSLGDTAL 775
Query: 342 Q-LYKLLEIPDPDKNWATLAQKLGLGILNNAFRLSAAPSKTLMDNYEVSGGTIKELVEAL 518
Q L +LL+ P+ +WA LA++LGL L + +R + +PS +L+ +YE++GG + L+EAL
Sbjct: 776 QNLEQLLDGPEAQGSWAELAERLGLRSLVDTYRQTTSPSGSLLRSYELAGGDLAGLLEAL 835
Query: 519 RQMGYTEAIDVIQAAFCTSGTAATSPVKTTSQAHSLPFSPASTRQQIDEL 668
MG E + +++ G + +T + S Q+ ++L
Sbjct: 836 SDMGLEEGVRLLR------GPETRDKLPSTEVKEDSAYGSQSVEQEAEKL 879
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,997,284
Number of extensions: 1185789
Number of successful extensions: 4330
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4304
Number of HSP's successfully gapped: 5
Length of query: 387
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 283
Effective length of database: 14,868,908
Effective search space: 4207900964
Effective search space used: 4207900964
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013992
(1163 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr08 1001 0.0
>Sscrofa_Chr08
|| Length = 148491826
Score = 1001 bits (505), Expect = 0.0
Identities = 505/505 (100%)
Strand = Plus / Plus
Query: 659 agacgagctccgggatgacagcatctgtgacagcggtgtggagacgtcctttcgcaaact 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127368371 agacgagctccgggatgacagcatctgtgacagcggtgtggagacgtcctttcgcaaact 127368430
Query: 719 cagcttcacagagtctctgaccagcagcagctcattgctaactctcaacaaagtgcccca 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127368431 cagcttcacagagtctctgaccagcagcagctcattgctaactctcaacaaagtgcccca 127368490
Query: 779 cgatttcgggcaggaaggacctctagaaggcaaaatttagcctgctggcagtttccaaca 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127368491 cgatttcgggcaggaaggacctctagaaggcaaaatttagcctgctggcagtttccaaca 127368550
Query: 839 ccgcataaaccaaagctcttagattcttctgcattgtctacggaaggaagattaagtgca 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127368551 ccgcataaaccaaagctcttagattcttctgcattgtctacggaaggaagattaagtgca 127368610
Query: 899 tccagaggtgctcagaggaaccctggcctgcctgaatggttctggatgtaattcaaggcc 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127368611 tccagaggtgctcagaggaaccctggcctgcctgaatggttctggatgtaattcaaggcc 127368670
Query: 959 ttttaaacatgacatccttcttggttctaaatgaattttagttcaattcacttacagcta 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127368671 ttttaaacatgacatccttcttggttctaaatgaattttagttcaattcacttacagcta 127368730
Query: 1019 gtctacaatcacagcccctggcgaggccgactcctcgttgcgggtgagctttaccagctg 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127368731 gtctacaatcacagcccctggcgaggccgactcctcgttgcgggtgagctttaccagctg 127368790
Query: 1079 ctttctgttgttattgctgctgtccctctgctgtgtctccactgcttgtcattaaaagtt 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127368791 ctttctgttgttattgctgctgtccctctgctgtgtctccactgcttgtcattaaaagtt 127368850
Query: 1139 gtcacagggagttccctggtggcct 1163
|||||||||||||||||||||||||
Sbjct: 127368851 gtcacagggagttccctggtggcct 127368875
Score = 1001 bits (505), Expect = 0.0
Identities = 505/505 (100%)
Strand = Plus / Plus
Query: 659 agacgagctccgggatgacagcatctgtgacagcggtgtggagacgtcctttcgcaaact 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127622365 agacgagctccgggatgacagcatctgtgacagcggtgtggagacgtcctttcgcaaact 127622424
Query: 719 cagcttcacagagtctctgaccagcagcagctcattgctaactctcaacaaagtgcccca 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127622425 cagcttcacagagtctctgaccagcagcagctcattgctaactctcaacaaagtgcccca 127622484
Query: 779 cgatttcgggcaggaaggacctctagaaggcaaaatttagcctgctggcagtttccaaca 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127622485 cgatttcgggcaggaaggacctctagaaggcaaaatttagcctgctggcagtttccaaca 127622544
Query: 839 ccgcataaaccaaagctcttagattcttctgcattgtctacggaaggaagattaagtgca 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127622545 ccgcataaaccaaagctcttagattcttctgcattgtctacggaaggaagattaagtgca 127622604
Query: 899 tccagaggtgctcagaggaaccctggcctgcctgaatggttctggatgtaattcaaggcc 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127622605 tccagaggtgctcagaggaaccctggcctgcctgaatggttctggatgtaattcaaggcc 127622664
Query: 959 ttttaaacatgacatccttcttggttctaaatgaattttagttcaattcacttacagcta 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127622665 ttttaaacatgacatccttcttggttctaaatgaattttagttcaattcacttacagcta 127622724
Query: 1019 gtctacaatcacagcccctggcgaggccgactcctcgttgcgggtgagctttaccagctg 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127622725 gtctacaatcacagcccctggcgaggccgactcctcgttgcgggtgagctttaccagctg 127622784
Query: 1079 ctttctgttgttattgctgctgtccctctgctgtgtctccactgcttgtcattaaaagtt 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127622785 ctttctgttgttattgctgctgtccctctgctgtgtctccactgcttgtcattaaaagtt 127622844
Query: 1139 gtcacagggagttccctggtggcct 1163
|||||||||||||||||||||||||
Sbjct: 127622845 gtcacagggagttccctggtggcct 127622869
Score = 363 bits (183), Expect = 1e-97
Identities = 183/183 (100%)
Strand = Plus / Plus
Query: 478 aggtctccggggggacaataaaggagctggtggaggccctgagacagatgggctacactg 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127365561 aggtctccggggggacaataaaggagctggtggaggccctgagacagatgggctacactg 127365620
Query: 538 aagccattgacgtgatccaggcggccttctgcacctcaggaaccgcagccaccagccctg 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127365621 aagccattgacgtgatccaggcggccttctgcacctcaggaaccgcagccaccagccctg 127365680
Query: 598 tgaagaccacctctcaggcccactcgctgcccttctcgcctgcctccacaaggcagcaaa 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127365681 tgaagaccacctctcaggcccactcgctgcccttctcgcctgcctccacaaggcagcaaa 127365740
Query: 658 tag 660
|||
Sbjct: 127365741 tag 127365743
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,893,576
Number of extensions: 8135
Number of successful extensions: 8135
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8135
Number of HSP's successfully gapped: 3
Length of query: 1163
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1142
Effective length of database: 2,808,413,156
Effective search space: 3207207824152
Effective search space used: 3207207824152
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)