Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013995
(494 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001107985.1| adipose specific 2 [Bos taurus]. 62 2e-10
>ref|NP_001107985.1| adipose specific 2 [Bos taurus].
Length = 76
Score = 62.0 bits (149), Expect = 2e-10
Identities = 36/66 (54%), Positives = 38/66 (57%)
Frame = +2
Query: 101 MASKGLQDLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQKAMDQVAKSTQETIDKTANQ 280
MASKGLQDLK GQKAMDQVAK+TQETID+TANQ
Sbjct: 1 MASKGLQDLKKQVEGAAQEAVTSAGTAVQQVVDQATEAGQKAMDQVAKTTQETIDQTANQ 60
Query: 281 ASETFS 298
ASETFS
Sbjct: 61 ASETFS 66
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 11,056,790
Number of extensions: 236832
Number of successful extensions: 473
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 472
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 17,681,374
Length adjustment: 94
Effective length of query: 70
Effective length of database: 14,571,102
Effective search space: 1019977140
Effective search space used: 1019977140
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Animal-Genome cDNA 20110601C-013995
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013995
(494 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_853773.1| PREDICTED: similar to synuclein, gamma (breast ... 65 4e-11
>ref|XP_853773.1| PREDICTED: similar to synuclein, gamma (breast cancer-specific
protein 1) [Canis familiaris].
Length = 234
Score = 64.7 bits (156), Expect = 4e-11
Identities = 38/67 (56%), Positives = 38/67 (56%)
Frame = +2
Query: 98 AMASKGLQDLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQKAMDQVAKSTQETIDKTAN 277
AMA KGLQDLK GQKAMDQVAKSTQETIDKTAN
Sbjct: 159 AMAGKGLQDLKQHVQGAAQEAVTAAGASAQQVVDQATEAGQKAMDQVAKSTQETIDKTAN 218
Query: 278 QASETFS 298
QASETFS
Sbjct: 219 QASETFS 225
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 11,146,972
Number of extensions: 171387
Number of successful extensions: 432
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 431
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 18,874,504
Length adjustment: 95
Effective length of query: 69
Effective length of database: 15,707,584
Effective search space: 1083823296
Effective search space used: 1083823296
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013995
(494 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003133148.1| PREDICTED: adipose most abundant gene transc... 65 2e-11
Alignment gi|NP_001230432.1| adipose specific 2 [Sus scrofa]. 65 2e-11
>ref|XP_003133148.1| PREDICTED: adipose most abundant gene transcript 2 protein-like
[Sus scrofa].
Length = 76
Score = 64.7 bits (156), Expect = 2e-11
Identities = 38/66 (57%), Positives = 38/66 (57%)
Frame = +2
Query: 101 MASKGLQDLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQKAMDQVAKSTQETIDKTANQ 280
MASKGLQDLK GQKAMDQVAKSTQETIDKTANQ
Sbjct: 1 MASKGLQDLKQQVEGAAQEAVTAAGAAAQQVVDQATEAGQKAMDQVAKSTQETIDKTANQ 60
Query: 281 ASETFS 298
ASETFS
Sbjct: 61 ASETFS 66
>ref|NP_001230432.1| adipose specific 2 [Sus scrofa].
Length = 76
Score = 64.7 bits (156), Expect = 2e-11
Identities = 38/66 (57%), Positives = 38/66 (57%)
Frame = +2
Query: 101 MASKGLQDLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQKAMDQVAKSTQETIDKTANQ 280
MASKGLQDLK GQKAMDQVAKSTQETIDKTANQ
Sbjct: 1 MASKGLQDLKQQVEGAAQEAVTAAGAAAQQVVDQTTEAGQKAMDQVAKSTQETIDKTANQ 60
Query: 281 ASETFS 298
ASETFS
Sbjct: 61 ASETFS 66
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 7,779,473
Number of extensions: 257556
Number of successful extensions: 260
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 258
Number of HSP's successfully gapped: 2
Length of query: 164
Length of database: 11,343,932
Length adjustment: 91
Effective length of query: 73
Effective length of database: 9,078,305
Effective search space: 662716265
Effective search space used: 662716265
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013995
(494 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 9,242,308
Number of extensions: 138869
Number of successful extensions: 370
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 370
Number of HSP's successfully gapped: 0
Length of query: 164
Length of database: 15,617,559
Length adjustment: 93
Effective length of query: 71
Effective length of database: 12,824,211
Effective search space: 910518981
Effective search space used: 910518981
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013995
(494 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006820.1| adipose specific 2 [Homo sapiens]. 61 4e-10
>ref|NP_006820.1| adipose specific 2 [Homo sapiens].
Length = 76
Score = 61.2 bits (147), Expect = 4e-10
Identities = 35/66 (53%), Positives = 38/66 (57%)
Frame = +2
Query: 101 MASKGLQDLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQKAMDQVAKSTQETIDKTANQ 280
MASKGLQDLK GQKAMDQ+AK+TQETIDKTANQ
Sbjct: 1 MASKGLQDLKQQVEGTAQEAVSAAGAAAQQVVDQATEAGQKAMDQLAKTTQETIDKTANQ 60
Query: 281 ASETFS 298
AS+TFS
Sbjct: 61 ASDTFS 66
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 10,880,202
Number of extensions: 160381
Number of successful extensions: 405
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 404
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 18,297,164
Length adjustment: 95
Effective length of query: 69
Effective length of database: 15,165,584
Effective search space: 1046425296
Effective search space used: 1046425296
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013995
(494 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 385 e-104
>Sscrofa_Chr14
|| Length = 153851969
Score = 385 bits (194), Expect = e-104
Identities = 194/194 (100%)
Strand = Plus / Plus
Query: 223 agccatggaccaggtggccaagtctacccaggaaaccatcgacaagactgctaaccaggc 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95322916 agccatggaccaggtggccaagtctacccaggaaaccatcgacaagactgctaaccaggc 95322975
Query: 283 ctcggagactttctccggttttgggaaaaaattcggcctcctaaaatgacagaaaggaga 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95322976 ctcggagactttctccggttttgggaaaaaattcggcctcctaaaatgacagaaaggaga 95323035
Query: 343 cgagggtgacttcctaccaggtcctgagctctagcaggctcttagccggccctctcatta 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95323036 cgagggtgacttcctaccaggtcctgagctctagcaggctcttagccggccctctcatta 95323095
Query: 403 aagcacatattctt 416
||||||||||||||
Sbjct: 95323096 aagcacatattctt 95323109
Score = 377 bits (190), Expect = e-102
Identities = 193/194 (99%)
Strand = Plus / Minus
Query: 223 agccatggaccaggtggccaagtctacccaggaaaccatcgacaagactgctaaccaggc 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95183204 agccatggaccaggtggccaagtctacccaggaaaccatcgacaagactgctaaccaggc 95183145
Query: 283 ctcggagactttctccggttttgggaaaaaattcggcctcctaaaatgacagaaaggaga 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95183144 ctcggagactttctccggttttgggaaaaaattcggcctcctaaaatgacagaaaggaga 95183085
Query: 343 cgagggtgacttcctaccaggtcctgagctctagcaggctcttagccggccctctcatta 402
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 95183084 cgagggtgacttcctaccaggtcctgagctctaccaggctcttagccggccctctcatta 95183025
Query: 403 aagcacatattctt 416
||||||||||||||
Sbjct: 95183024 aagcacatattctt 95183011
Score = 311 bits (157), Expect = 2e-82
Identities = 160/161 (99%)
Strand = Plus / Minus
Query: 1 cgccttaaaaacaagagctggtgctcaggtcgctgccgctttgagcaagatccagcgtcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95185230 cgccttaaaaacaagagctggtgctcaggtcgctgccgctttgagcaagatccagcgtcg 95185171
Query: 61 ctgcggttaaccctgacctctttggagaccccgcgcagccatggccagcaagggcttgca 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 95185170 ctgcggttaaccctgacctctttggagaccccgcacagccatggccagcaagggcttgca 95185111
Query: 121 ggacctgaagcagcaagtggagggggcggctcaggaagctg 161
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 95185110 ggacctgaagcagcaagtggagggggcggctcaggaagctg 95185070
Score = 311 bits (157), Expect = 2e-82
Identities = 160/161 (99%)
Strand = Plus / Plus
Query: 1 cgccttaaaaacaagagctggtgctcaggtcgctgccgctttgagcaagatccagcgtcg 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95320883 cgccttaaaaaccagagctggtgctcaggtcgctgccgctttgagcaagatccagcgtcg 95320942
Query: 61 ctgcggttaaccctgacctctttggagaccccgcgcagccatggccagcaagggcttgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95320943 ctgcggttaaccctgacctctttggagaccccgcgcagccatggccagcaagggcttgca 95321002
Query: 121 ggacctgaagcagcaagtggagggggcggctcaggaagctg 161
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 95321003 ggacctgaagcagcaagtggagggggcggctcaggaagctg 95321043
Score = 127 bits (64), Expect = 6e-27
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 161 gtgactgcagctggagcagcagctcagcaagtggtggatcaggccacagaagcagggcag 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95322643 gtgactgcagctggagcagcagctcagcaagtggtggatcaggccacagaagcagggcag 95322702
Query: 221 aaag 224
||||
Sbjct: 95322703 aaag 95322706
Score = 119 bits (60), Expect = 1e-24
Identities = 63/64 (98%)
Strand = Plus / Minus
Query: 161 gtgactgcagctggagcagcagctcagcaagtggtggatcaggccacagaagcagggcag 220
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 95183477 gtgactgcagctggagcagcagctcagcaagtggtggatcagaccacagaagcagggcag 95183418
Query: 221 aaag 224
||||
Sbjct: 95183417 aaag 95183414
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 12,156,719
Number of extensions: 291
Number of successful extensions: 291
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 291
Number of HSP's successfully gapped: 6
Length of query: 494
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 473
Effective length of database: 2,808,413,156
Effective search space: 1328379422788
Effective search space used: 1328379422788
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)