Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014005
(1010 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001076861.1| GPN-loop GTPase 1 [Bos taurus]. 540 e-154
Alignment gi|NP_001068740.1| GPN-loop GTPase 3 [Bos taurus]. 92 7e-19
Alignment gi|NP_001092443.1| ATP binding domain 1 family, member B [Bos t... 89 8e-18
>ref|NP_001076861.1| GPN-loop GTPase 1 [Bos taurus].
Length = 373
Score = 540 bits (1392), Expect = e-154
Identities = 279/320 (87%), Positives = 285/320 (89%)
Frame = +2
Query: 50 MAAPEAATVPQASGGPRAPACLLVLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAVH 229
MAAP +AT QASGGPR PACLLVLGMAGSGKTTFVQRLTG+LHSQG PPYVINLDPAVH
Sbjct: 1 MAAPASATESQASGGPRPPACLLVLGMAGSGKTTFVQRLTGYLHSQGCPPYVINLDPAVH 60
Query: 230 EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNTSKYVL 409
EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQN SKYVL
Sbjct: 61 EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNMSKYVL 120
Query: 410 IDTPGQIEVFTWSASGTIITEALASSFPTIVVYVMDTSRSTNPVTFMSNMLYACSILYKT 589
IDTPGQIEVFTWSASGTIITEALASSFPTIV+YVMDTSRSTNPVTFMSNMLYACSILYKT
Sbjct: 121 IDTPGQIEVFTWSASGTIITEALASSFPTIVIYVMDTSRSTNPVTFMSNMLYACSILYKT 180
Query: 590 KLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRV 769
KLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRV
Sbjct: 181 KLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRV 240
Query: 770 VGVSAVLGTGLDEFFVQVASAAXXXXXXXXXXXXXLKKSLANAXXXXXXXXXXXXXXDMG 949
VGVSAVLGTGLDE FVQVASA LKKSLA+A DMG
Sbjct: 241 VGVSAVLGTGLDELFVQVASATEEYEREYRPEYERLKKSLASAQSQQQKEQLERLQKDMG 300
Query: 950 SIALDTGTATGSSSPMLDPS 1009
S+ALDTGTATGSSSP+LDPS
Sbjct: 301 SVALDTGTATGSSSPVLDPS 320
>ref|NP_001068740.1| GPN-loop GTPase 3 [Bos taurus].
Length = 284
Score = 92.0 bits (227), Expect = 7e-19
Identities = 55/175 (31%), Positives = 90/175 (51%), Gaps = 3/175 (1%)
Frame = +2
Query: 116 LVLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAVHEVPFPANIDIRDTVKYKEVMKQ 295
LV+G AGSGK+T+ + H + V+NLDPA + DIR+ ++ +VM+
Sbjct: 7 LVMGPAGSGKSTYCATMVQHCEALNRSVQVVNLDPAAEHFNYSVMADIRELIEVDDVMED 66
Query: 296 YGL--GPNGGIVTSLNLFATRFDQVMKFIEKAQNTSKYVLIDTPGQIEVFTWSASGTIIT 469
L GPNGG+V + FA FD + + ++ Y+L D PGQIE++T +
Sbjct: 67 STLQFGPNGGLVFCMEYFANNFDWLENCLGHVED--DYILFDCPGQIELYTHLPVMKQLV 124
Query: 470 EALAS-SFPTIVVYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDII 631
+ L F V+++D+ F+S +L A S + ++P + VM K D++
Sbjct: 125 QQLEQWEFRVCGVFLVDSQFMVESFKFISGILAALSAMISLEIPQVNVMTKMDLL 179
>ref|NP_001092443.1| ATP binding domain 1 family, member B [Bos taurus].
Length = 310
Score = 88.6 bits (218), Expect = 8e-18
Identities = 52/186 (27%), Positives = 93/186 (50%), Gaps = 1/186 (0%)
Frame = +2
Query: 83 ASGGPRAPACLLVLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAVHEVPFPANIDIR 262
A P V+G GSGKTT+ ++ L + G V+NLDPA +P+ +D+
Sbjct: 2 AGAAPTTAFGQAVIGPPGSGKTTYCLGMSEFLRALGRRVAVVNLDPANEGLPYECAVDVG 61
Query: 263 DTVKYKEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNTSKYVLIDTPGQIEVFT 442
+ V +VM LGPNGG++ + D + ++ + Y L D PGQ+E+ T
Sbjct: 62 ELVGLGDVMDALQLGPNGGLLYCMEYLEANLDWLRAKLDPLR--GHYFLFDCPGQVELCT 119
Query: 443 -WSASGTIITEALASSFPTIVVYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNK 619
A +I ++ V+++D+ T+P F+S + + + + +LP + +++K
Sbjct: 120 HHGALRSIFSQMTQWDLRLTAVHLVDSHYCTDPAKFISVLCTSLATMLHVELPHVNLLSK 179
Query: 620 TDIIDH 637
D+I+H
Sbjct: 180 MDLIEH 185
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,537,143
Number of extensions: 1157811
Number of successful extensions: 3832
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3814
Number of HSP's successfully gapped: 3
Length of query: 336
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 233
Effective length of database: 14,273,310
Effective search space: 3325681230
Effective search space used: 3325681230
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-014005
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014005
(1010 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850503.1| PREDICTED: similar to XPA binding protein 1 iso... 533 e-151
Alignment gi|XP_850597.1| PREDICTED: similar to XPA binding protein 1 iso... 531 e-151
Alignment gi|XP_861696.1| PREDICTED: similar to XPA binding protein 1 iso... 493 e-145
Alignment gi|XP_532914.2| PREDICTED: similar to XPA binding protein 1 iso... 491 e-144
Alignment gi|XP_861636.1| PREDICTED: similar to XPA binding protein 1 iso... 342 3e-94
Alignment gi|XP_861895.1| PREDICTED: similar to XPA binding protein 1 iso... 340 8e-94
Alignment gi|XP_861663.1| PREDICTED: similar to XPA binding protein 1 iso... 340 1e-93
Alignment gi|XP_861923.1| PREDICTED: similar to XPA binding protein 1 iso... 338 4e-93
Alignment gi|XP_850986.1| PREDICTED: similar to XPA binding protein 1 [Ca... 329 2e-90
Alignment gi|XP_849647.1| PREDICTED: similar to XPA binding protein 1, pa... 327 1e-89
>ref|XP_850503.1| PREDICTED: similar to XPA binding protein 1 isoform 1 [Canis
familiaris].
Length = 374
Score = 533 bits (1372), Expect = e-151
Identities = 274/320 (85%), Positives = 280/320 (87%)
Frame = +2
Query: 50 MAAPEAATVPQASGGPRAPACLLVLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAVH 229
MAAP A +ASGGPR P CLLVLGMAGSGKTTFVQRLTGHLHS+GSPPYV+NLDPAVH
Sbjct: 1 MAAPAEAAEERASGGPRPPVCLLVLGMAGSGKTTFVQRLTGHLHSRGSPPYVVNLDPAVH 60
Query: 230 EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNTSKYVL 409
EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQN SKYVL
Sbjct: 61 EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNMSKYVL 120
Query: 410 IDTPGQIEVFTWSASGTIITEALASSFPTIVVYVMDTSRSTNPVTFMSNMLYACSILYKT 589
IDTPGQIEVFTWSASGTIITEALASSFPT+V+YVMDTSRSTNPVTFMSNMLYACSILYKT
Sbjct: 121 IDTPGQIEVFTWSASGTIITEALASSFPTVVIYVMDTSRSTNPVTFMSNMLYACSILYKT 180
Query: 590 KLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRV 769
KLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRV
Sbjct: 181 KLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRV 240
Query: 770 VGVSAVLGTGLDEFFVQVASAAXXXXXXXXXXXXXLKKSLANAXXXXXXXXXXXXXXDMG 949
VGVSAVLGTGLDE FVQV SAA LKKSLANA DMG
Sbjct: 241 VGVSAVLGTGLDELFVQVTSAAEEYEREYRPEYERLKKSLANAQSQHQKEQLERLRKDMG 300
Query: 950 SIALDTGTATGSSSPMLDPS 1009
S+ALDTGTAT S SP LDPS
Sbjct: 301 SVALDTGTATDSLSPALDPS 320
>ref|XP_850597.1| PREDICTED: similar to XPA binding protein 1 isoform 2 [Canis
familiaris].
Length = 374
Score = 531 bits (1368), Expect = e-151
Identities = 272/320 (85%), Positives = 280/320 (87%)
Frame = +2
Query: 50 MAAPEAATVPQASGGPRAPACLLVLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAVH 229
MAAP A +ASGGPR P CLLVLGMAGSGKTTFVQRLTGHLHS+GSPPYV+NLDPAVH
Sbjct: 1 MAAPAEAAEERASGGPRPPVCLLVLGMAGSGKTTFVQRLTGHLHSRGSPPYVVNLDPAVH 60
Query: 230 EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNTSKYVL 409
EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQN SKYVL
Sbjct: 61 EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNMSKYVL 120
Query: 410 IDTPGQIEVFTWSASGTIITEALASSFPTIVVYVMDTSRSTNPVTFMSNMLYACSILYKT 589
IDTPGQIEVFTWSASGTIITEALASSFPT+V+Y+MDTSRSTNPVTFMSNMLYACSILYKT
Sbjct: 121 IDTPGQIEVFTWSASGTIITEALASSFPTVVIYIMDTSRSTNPVTFMSNMLYACSILYKT 180
Query: 590 KLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRV 769
KLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSL+V
Sbjct: 181 KLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLKV 240
Query: 770 VGVSAVLGTGLDEFFVQVASAAXXXXXXXXXXXXXLKKSLANAXXXXXXXXXXXXXXDMG 949
VGVSAVLGTGLDE FVQV SAA LKKSLANA DMG
Sbjct: 241 VGVSAVLGTGLDELFVQVTSAAEEYEREYRPEYERLKKSLANAQSQHQKEQLERLRKDMG 300
Query: 950 SIALDTGTATGSSSPMLDPS 1009
S+ALDTGTAT S SP LDPS
Sbjct: 301 SVALDTGTATDSLSPALDPS 320
>ref|XP_861696.1| PREDICTED: similar to XPA binding protein 1 isoform 6 [Canis
familiaris].
Length = 288
Score = 493 bits (1268), Expect(2) = e-145
Identities = 247/262 (94%), Positives = 252/262 (96%)
Frame = +2
Query: 50 MAAPEAATVPQASGGPRAPACLLVLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAVH 229
MAAP A +ASGGPR P CLLVLGMAGSGKTTFVQRLTGHLHS+GSPPYV+NLDPAVH
Sbjct: 1 MAAPAEAAEERASGGPRPPVCLLVLGMAGSGKTTFVQRLTGHLHSRGSPPYVVNLDPAVH 60
Query: 230 EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNTSKYVL 409
EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQN SKYVL
Sbjct: 61 EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNMSKYVL 120
Query: 410 IDTPGQIEVFTWSASGTIITEALASSFPTIVVYVMDTSRSTNPVTFMSNMLYACSILYKT 589
IDTPGQIEVFTWSASGTIITEALASSFPT+V+YVMDTSRSTNPVTFMSNMLYACSILYKT
Sbjct: 121 IDTPGQIEVFTWSASGTIITEALASSFPTVVIYVMDTSRSTNPVTFMSNMLYACSILYKT 180
Query: 590 KLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRV 769
KLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRV
Sbjct: 181 KLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRV 240
Query: 770 VGVSAVLGTGLDEFFVQVASAA 835
VGVSAVLGTGLDE FVQV SAA
Sbjct: 241 VGVSAVLGTGLDELFVQVTSAA 262
Score = 41.2 bits (95), Expect(2) = e-145
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = +3
Query: 891 PMHKASSRKSNWNAFRKIWAL 953
PMH+AS R++NWNAF KIWAL
Sbjct: 268 PMHRASIRRNNWNAFGKIWAL 288
>ref|XP_532914.2| PREDICTED: similar to XPA binding protein 1 isoform 1 [Canis
familiaris].
Length = 288
Score = 491 bits (1264), Expect(2) = e-144
Identities = 245/262 (93%), Positives = 252/262 (96%)
Frame = +2
Query: 50 MAAPEAATVPQASGGPRAPACLLVLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAVH 229
MAAP A +ASGGPR P CLLVLGMAGSGKTTFVQRLTGHLHS+GSPPYV+NLDPAVH
Sbjct: 1 MAAPAEAAEERASGGPRPPVCLLVLGMAGSGKTTFVQRLTGHLHSRGSPPYVVNLDPAVH 60
Query: 230 EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNTSKYVL 409
EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQN SKYVL
Sbjct: 61 EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNMSKYVL 120
Query: 410 IDTPGQIEVFTWSASGTIITEALASSFPTIVVYVMDTSRSTNPVTFMSNMLYACSILYKT 589
IDTPGQIEVFTWSASGTIITEALASSFPT+V+Y+MDTSRSTNPVTFMSNMLYACSILYKT
Sbjct: 121 IDTPGQIEVFTWSASGTIITEALASSFPTVVIYIMDTSRSTNPVTFMSNMLYACSILYKT 180
Query: 590 KLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRV 769
KLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSL+V
Sbjct: 181 KLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLKV 240
Query: 770 VGVSAVLGTGLDEFFVQVASAA 835
VGVSAVLGTGLDE FVQV SAA
Sbjct: 241 VGVSAVLGTGLDELFVQVTSAA 262
Score = 41.2 bits (95), Expect(2) = e-144
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = +3
Query: 891 PMHKASSRKSNWNAFRKIWAL 953
PMH+AS R++NWNAF KIWAL
Sbjct: 268 PMHRASIRRNNWNAFGKIWAL 288
>ref|XP_861636.1| PREDICTED: similar to XPA binding protein 1 isoform 4 [Canis
familiaris].
Length = 279
Score = 342 bits (876), Expect(2) = 3e-94
Identities = 180/216 (83%), Positives = 183/216 (84%)
Frame = +2
Query: 362 VMKFIEKAQNTSKYVLIDTPGQIEVFTWSASGTIITEALASSFPTIVVYVMDTSRSTNPV 541
VMKFIEKAQN SKYVLIDTPGQIEVFTWSASGTIITEALASSFPT+V+YVMDTSRSTNPV
Sbjct: 10 VMKFIEKAQNMSKYVLIDTPGQIEVFTWSASGTIITEALASSFPTVVIYVMDTSRSTNPV 69
Query: 542 TFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLT 721
TFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLT
Sbjct: 70 TFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLT 129
Query: 722 RSMSLVLDEFYSSLRVVGVSAVLGTGLDEFFVQVASAAXXXXXXXXXXXXXLKKSLANAX 901
RSMSLVLDEFYSSLRVVGVSAVLGTGLDE FVQV SAA LKKSLANA
Sbjct: 130 RSMSLVLDEFYSSLRVVGVSAVLGTGLDELFVQVTSAAEEYEREYRPEYERLKKSLANAQ 189
Query: 902 XXXXXXXXXXXXXDMGSIALDTGTATGSSSPMLDPS 1009
DMGS+ALDTGTAT S SP LDPS
Sbjct: 190 SQHQKEQLERLRKDMGSVALDTGTATDSLSPALDPS 225
Score = 23.1 bits (48), Expect(2) = 3e-94
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = +3
Query: 228 MKFPFLPILI 257
MK+PFLPIL+
Sbjct: 1 MKYPFLPILV 10
>ref|XP_861895.1| PREDICTED: similar to XPA binding protein 1 isoform 5 [Canis
familiaris].
Length = 279
Score = 340 bits (872), Expect(2) = 8e-94
Identities = 178/216 (82%), Positives = 183/216 (84%)
Frame = +2
Query: 362 VMKFIEKAQNTSKYVLIDTPGQIEVFTWSASGTIITEALASSFPTIVVYVMDTSRSTNPV 541
VMKFIEKAQN SKYVLIDTPGQIEVFTWSASGTIITEALASSFPT+V+Y+MDTSRSTNPV
Sbjct: 10 VMKFIEKAQNMSKYVLIDTPGQIEVFTWSASGTIITEALASSFPTVVIYIMDTSRSTNPV 69
Query: 542 TFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLT 721
TFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLT
Sbjct: 70 TFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLT 129
Query: 722 RSMSLVLDEFYSSLRVVGVSAVLGTGLDEFFVQVASAAXXXXXXXXXXXXXLKKSLANAX 901
RSMSLVLDEFYSSL+VVGVSAVLGTGLDE FVQV SAA LKKSLANA
Sbjct: 130 RSMSLVLDEFYSSLKVVGVSAVLGTGLDELFVQVTSAAEEYEREYRPEYERLKKSLANAQ 189
Query: 902 XXXXXXXXXXXXXDMGSIALDTGTATGSSSPMLDPS 1009
DMGS+ALDTGTAT S SP LDPS
Sbjct: 190 SQHQKEQLERLRKDMGSVALDTGTATDSLSPALDPS 225
Score = 23.1 bits (48), Expect(2) = 8e-94
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = +3
Query: 228 MKFPFLPILI 257
MK+PFLPIL+
Sbjct: 1 MKYPFLPILV 10
>ref|XP_861663.1| PREDICTED: similar to XPA binding protein 1 isoform 5 [Canis
familiaris].
Length = 269
Score = 340 bits (872), Expect = 1e-93
Identities = 179/215 (83%), Positives = 182/215 (84%)
Frame = +2
Query: 365 MKFIEKAQNTSKYVLIDTPGQIEVFTWSASGTIITEALASSFPTIVVYVMDTSRSTNPVT 544
MKFIEKAQN SKYVLIDTPGQIEVFTWSASGTIITEALASSFPT+V+YVMDTSRSTNPVT
Sbjct: 1 MKFIEKAQNMSKYVLIDTPGQIEVFTWSASGTIITEALASSFPTVVIYVMDTSRSTNPVT 60
Query: 545 FMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLTR 724
FMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLTR
Sbjct: 61 FMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLTR 120
Query: 725 SMSLVLDEFYSSLRVVGVSAVLGTGLDEFFVQVASAAXXXXXXXXXXXXXLKKSLANAXX 904
SMSLVLDEFYSSLRVVGVSAVLGTGLDE FVQV SAA LKKSLANA
Sbjct: 121 SMSLVLDEFYSSLRVVGVSAVLGTGLDELFVQVTSAAEEYEREYRPEYERLKKSLANAQS 180
Query: 905 XXXXXXXXXXXXDMGSIALDTGTATGSSSPMLDPS 1009
DMGS+ALDTGTAT S SP LDPS
Sbjct: 181 QHQKEQLERLRKDMGSVALDTGTATDSLSPALDPS 215
>ref|XP_861923.1| PREDICTED: similar to XPA binding protein 1 isoform 6 [Canis
familiaris].
Length = 269
Score = 338 bits (868), Expect = 4e-93
Identities = 177/215 (82%), Positives = 182/215 (84%)
Frame = +2
Query: 365 MKFIEKAQNTSKYVLIDTPGQIEVFTWSASGTIITEALASSFPTIVVYVMDTSRSTNPVT 544
MKFIEKAQN SKYVLIDTPGQIEVFTWSASGTIITEALASSFPT+V+Y+MDTSRSTNPVT
Sbjct: 1 MKFIEKAQNMSKYVLIDTPGQIEVFTWSASGTIITEALASSFPTVVIYIMDTSRSTNPVT 60
Query: 545 FMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLTR 724
FMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLTR
Sbjct: 61 FMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLTR 120
Query: 725 SMSLVLDEFYSSLRVVGVSAVLGTGLDEFFVQVASAAXXXXXXXXXXXXXLKKSLANAXX 904
SMSLVLDEFYSSL+VVGVSAVLGTGLDE FVQV SAA LKKSLANA
Sbjct: 121 SMSLVLDEFYSSLKVVGVSAVLGTGLDELFVQVTSAAEEYEREYRPEYERLKKSLANAQS 180
Query: 905 XXXXXXXXXXXXDMGSIALDTGTATGSSSPMLDPS 1009
DMGS+ALDTGTAT S SP LDPS
Sbjct: 181 QHQKEQLERLRKDMGSVALDTGTATDSLSPALDPS 215
>ref|XP_850986.1| PREDICTED: similar to XPA binding protein 1 [Canis familiaris].
Length = 316
Score = 329 bits (844), Expect = 2e-90
Identities = 172/213 (80%), Positives = 179/213 (84%)
Frame = +2
Query: 341 FATRFDQVMKFIEKAQNTSKYVLIDTPGQIEVFTWSASGTIITEALASSFPTIVVYVMDT 520
F ++VMKFIEKAQN SKYVLIDTPGQIEVFTWSASGTIITEALASSFPT+V+Y+MDT
Sbjct: 30 FIVVMNKVMKFIEKAQNMSKYVLIDTPGQIEVFTWSASGTIITEALASSFPTVVIYIMDT 89
Query: 521 SRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQET 700
SRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQET
Sbjct: 90 SRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQET 149
Query: 701 TYVSNLTRSMSLVLDEFYSSLRVVGVSAVLGTGLDEFFVQVASAAXXXXXXXXXXXXXLK 880
TYVSNLTRSMSLVLDEFYSSL+VVGVSAVLGTGLDE FVQV SAA LK
Sbjct: 150 TYVSNLTRSMSLVLDEFYSSLKVVGVSAVLGTGLDELFVQVTSAAEEYEREYRPEYERLK 209
Query: 881 KSLANAXXXXXXXXXXXXXXDMGSIALDTGTAT 979
KSLANA DMGS+ALDTGTAT
Sbjct: 210 KSLANAQSQHQKEQLERLRKDMGSVALDTGTAT 242
Score = 75.9 bits (185), Expect = 6e-14
Identities = 36/36 (100%), Positives = 36/36 (100%)
Frame = +2
Query: 512 MDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNK 619
MDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNK
Sbjct: 1 MDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNK 36
>ref|XP_849647.1| PREDICTED: similar to XPA binding protein 1, partial [Canis
familiaris].
Length = 206
Score = 327 bits (837), Expect = 1e-89
Identities = 171/206 (83%), Positives = 176/206 (85%)
Frame = +2
Query: 362 VMKFIEKAQNTSKYVLIDTPGQIEVFTWSASGTIITEALASSFPTIVVYVMDTSRSTNPV 541
VMKFIEKAQN SKYVLIDTPGQIEVFTWSASGTIITEALASSFPT+V+YVMDTSRSTNPV
Sbjct: 1 VMKFIEKAQNMSKYVLIDTPGQIEVFTWSASGTIITEALASSFPTVVIYVMDTSRSTNPV 60
Query: 542 TFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLT 721
TFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLT
Sbjct: 61 TFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLT 120
Query: 722 RSMSLVLDEFYSSLRVVGVSAVLGTGLDEFFVQVASAAXXXXXXXXXXXXXLKKSLANAX 901
RSMSLVLDEFYSSL+VVGVSAVLGTGLDE FVQV SAA LKKSLANA
Sbjct: 121 RSMSLVLDEFYSSLKVVGVSAVLGTGLDELFVQVTSAAEEYEREYRPEYERLKKSLANAQ 180
Query: 902 XXXXXXXXXXXXXDMGSIALDTGTAT 979
D+GS+ALDTGTAT
Sbjct: 181 SQHQKEQLERLRKDVGSVALDTGTAT 206
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,104,390
Number of extensions: 1185404
Number of successful extensions: 3914
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 3900
Number of HSP's successfully gapped: 21
Length of query: 336
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 233
Effective length of database: 15,440,896
Effective search space: 3597728768
Effective search space used: 3597728768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014005
(1010 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003125337.2| PREDICTED: GPN-loop GTPase 1-like [Sus scrof... 565 e-161
Alignment gi|NP_001230637.1| GPN-loop GTPase 3 [Sus scrofa]. 92 5e-19
Alignment gi|XP_003127766.1| PREDICTED: GPN-loop GTPase 2-like [Sus scrof... 90 2e-18
>ref|XP_003125337.2| PREDICTED: GPN-loop GTPase 1-like [Sus scrofa].
Length = 373
Score = 565 bits (1457), Expect = e-161
Identities = 292/320 (91%), Positives = 293/320 (91%)
Frame = +2
Query: 50 MAAPEAATVPQASGGPRAPACLLVLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAVH 229
MAAPEAATVPQASGGPRAPACLLVLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAVH
Sbjct: 1 MAAPEAATVPQASGGPRAPACLLVLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAVH 60
Query: 230 EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNTSKYVL 409
EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNTSKYVL
Sbjct: 61 EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNTSKYVL 120
Query: 410 IDTPGQIEVFTWSASGTIITEALASSFPTIVVYVMDTSRSTNPVTFMSNMLYACSILYKT 589
IDTPGQIEVFTWSASGTIITEALASSFPTIV+YVMDTSRSTNPVTFMSNMLYACSILYKT
Sbjct: 121 IDTPGQIEVFTWSASGTIITEALASSFPTIVIYVMDTSRSTNPVTFMSNMLYACSILYKT 180
Query: 590 KLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRV 769
KLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRV
Sbjct: 181 KLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRV 240
Query: 770 VGVSAVLGTGLDEFFVQVASAAXXXXXXXXXXXXXLKKSLANAXXXXXXXXXXXXXXDMG 949
VGVSAVLGTGLDEFFVQVASAA LKKSLANA DMG
Sbjct: 241 VGVSAVLGTGLDEFFVQVASAAEEYEREYRPEYERLKKSLANAQSQQQKEQLERLQKDMG 300
Query: 950 SIALDTGTATGSSSPMLDPS 1009
SIALDTGTATGSSSPMLDPS
Sbjct: 301 SIALDTGTATGSSSPMLDPS 320
>ref|NP_001230637.1| GPN-loop GTPase 3 [Sus scrofa].
Length = 284
Score = 92.0 bits (227), Expect = 5e-19
Identities = 54/175 (30%), Positives = 90/175 (51%), Gaps = 3/175 (1%)
Frame = +2
Query: 116 LVLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAVHEVPFPANIDIRDTVKYKEVMKQ 295
LV+G AGSGK+T+ + H + V+NLDPA + DIR+ ++ +VM+
Sbjct: 7 LVMGPAGSGKSTYCATMVQHCEALNRSVQVVNLDPAAEHFSYSVMADIRELIEVDDVMED 66
Query: 296 YGL--GPNGGIVTSLNLFATRFDQVMKFIEKAQNTSKYVLIDTPGQIEVFTWSASGTIIT 469
L GPNGG+V + FA FD + + ++ Y+L D PGQIE++T +
Sbjct: 67 NTLQFGPNGGLVFCMEYFANNFDWLENCLGHVED--DYILFDCPGQIELYTHLPVMKQLV 124
Query: 470 EALAS-SFPTIVVYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDII 631
+ L F V+++D+ F+S +L A S + ++P + +M K D++
Sbjct: 125 QQLEQWEFRVCGVFLVDSQFMVESFKFISGILAALSAMISLEIPQVNIMTKMDLL 179
>ref|XP_003127766.1| PREDICTED: GPN-loop GTPase 2-like [Sus scrofa].
Length = 310
Score = 90.1 bits (222), Expect = 2e-18
Identities = 50/174 (28%), Positives = 92/174 (52%), Gaps = 1/174 (0%)
Frame = +2
Query: 119 VLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAVHEVPFPANIDIRDTVKYKEVMKQY 298
V+G GSGKTT+ ++ L + G V+NLDPA +P+ +D+ + V +VM +
Sbjct: 14 VIGPPGSGKTTYCLGMSEFLRALGRRVAVVNLDPANEGLPYECAVDVGELVGLSDVMDEL 73
Query: 299 GLGPNGGIVTSLNLFATRFDQVMKFIEKAQNTSKYVLIDTPGQIEVFT-WSASGTIITEA 475
LGPNGG++ + D + ++ + Y L D PGQ+E+ T A +I ++
Sbjct: 74 QLGPNGGLLYCMEYLEANLDWLRAKLDPLR--GHYFLFDCPGQVELCTHHGALRSIFSQM 131
Query: 476 LASSFPTIVVYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDH 637
V+++D+ T+P F+S + + + + +LP + +++K D+I+H
Sbjct: 132 TQWDLRLTAVHLVDSHYCTDPAKFISVLCTSLATMLHVELPHVNLLSKMDLIEH 185
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,049,324
Number of extensions: 742688
Number of successful extensions: 2380
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2368
Number of HSP's successfully gapped: 3
Length of query: 336
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 237
Effective length of database: 8,879,129
Effective search space: 2104353573
Effective search space used: 2104353573
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014005
(1010 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598517.1| GPN-loop GTPase 1 [Mus musculus]. 511 e-145
Alignment gi|NP_077178.1| GPN-loop GTPase 3 [Mus musculus]. 96 4e-20
Alignment gi|NP_598645.2| GPN-loop GTPase 2 [Mus musculus]. 90 2e-18
>ref|NP_598517.1| GPN-loop GTPase 1 [Mus musculus].
Length = 372
Score = 511 bits (1317), Expect = e-145
Identities = 262/320 (81%), Positives = 274/320 (85%)
Frame = +2
Query: 50 MAAPEAATVPQASGGPRAPACLLVLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAVH 229
MAAP A + PQAS P+ P CLLVLGMAGSGKTTFVQRLTGHLH++G PPYVINLDPAVH
Sbjct: 1 MAAPVAPSEPQASRAPQPPVCLLVLGMAGSGKTTFVQRLTGHLHNKGCPPYVINLDPAVH 60
Query: 230 EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNTSKYVL 409
EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNT +YVL
Sbjct: 61 EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNTFRYVL 120
Query: 410 IDTPGQIEVFTWSASGTIITEALASSFPTIVVYVMDTSRSTNPVTFMSNMLYACSILYKT 589
IDTPGQIEVFTWSASGTIITEALASSFPT+V+YVMDTSRSTNPVTFMSNMLYACSILYKT
Sbjct: 121 IDTPGQIEVFTWSASGTIITEALASSFPTVVIYVMDTSRSTNPVTFMSNMLYACSILYKT 180
Query: 590 KLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRV 769
KLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRV
Sbjct: 181 KLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRV 240
Query: 770 VGVSAVLGTGLDEFFVQVASAAXXXXXXXXXXXXXLKKSLANAXXXXXXXXXXXXXXDMG 949
VGVSAV+GTG DE QV SAA LKKSLANA DMG
Sbjct: 241 VGVSAVVGTGFDELCTQVTSAAEEYEREYRPEYERLKKSLANAQSNQQKEQLERLRKDMG 300
Query: 950 SIALDTGTATGSSSPMLDPS 1009
S+ALD G++SP+LDPS
Sbjct: 301 SVALDPEAGKGNASPVLDPS 320
>ref|NP_077178.1| GPN-loop GTPase 3 [Mus musculus].
Length = 284
Score = 95.9 bits (237), Expect = 4e-20
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 3/175 (1%)
Frame = +2
Query: 116 LVLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAVHEVPFPANIDIRDTVKYKEVMKQ 295
LV+G AGSGK+T+ + H + V+NLDPA +P DIR+ ++ +VM+
Sbjct: 7 LVMGPAGSGKSTYCSTMVQHCEALNRSVQVVNLDPAAEHFNYPVMADIRELIEVDDVMED 66
Query: 296 YGL--GPNGGIVTSLNLFATRFDQVMKFIEKAQNTSKYVLIDTPGQIEVFTWSASGTIIT 469
L GPNGG+V + FA FD + + ++ Y+L D PGQIE++T +
Sbjct: 67 ESLRFGPNGGLVFCMEYFANNFDWLENCLGHVED--DYILFDCPGQIELYTHLPVMKQLV 124
Query: 470 EALAS-SFPTIVVYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDII 631
+ L F V+++D+ F+S +L A S + ++P + +M K D++
Sbjct: 125 QQLEQWEFRVCGVFLVDSQFMVESFKFISGILAALSAMVSLEIPQVNIMTKMDLL 179
>ref|NP_598645.2| GPN-loop GTPase 2 [Mus musculus].
Length = 310
Score = 90.1 bits (222), Expect = 2e-18
Identities = 54/186 (29%), Positives = 94/186 (50%), Gaps = 1/186 (0%)
Frame = +2
Query: 83 ASGGPRAPACLLVLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAVHEVPFPANIDIR 262
A P V+G GSGKTT+ ++ L + G V+NLDPA +P+ +D+
Sbjct: 2 AGAAPTTAFGQAVIGPPGSGKTTYCLGMSEFLRALGRRVAVVNLDPANDGLPYECAVDVG 61
Query: 263 DTVKYKEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNTSKYVLIDTPGQIEVFT 442
+ V +VM LGPNGG++ + D + +E + Y L D PGQ+E+ T
Sbjct: 62 ELVGLGDVMDALRLGPNGGLLYCMEYLEANLDWLRAKLEPLR--GHYFLFDCPGQVELCT 119
Query: 443 -WSASGTIITEALASSFPTIVVYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNK 619
+A +I ++ V+++D+ T+P F+S + + + + +LP I +++K
Sbjct: 120 HHTALRSIFSQMAQWDLRLTAVHLVDSHYCTDPAKFISVLCTSLATMLHVELPHINLLSK 179
Query: 620 TDIIDH 637
D+I+H
Sbjct: 180 MDLIEH 185
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,271,226
Number of extensions: 991347
Number of successful extensions: 3270
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3256
Number of HSP's successfully gapped: 3
Length of query: 336
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 234
Effective length of database: 12,553,887
Effective search space: 2937609558
Effective search space used: 2937609558
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014005
(1010 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_009197.2| GPN-loop GTPase 1 isoform a [Homo sapiens]. 529 e-150
Alignment gi|NP_001138519.1| GPN-loop GTPase 1 isoform b [Homo sapiens]. 474 e-134
Alignment gi|NP_001138520.1| GPN-loop GTPase 1 isoform c [Homo sapiens]. 386 e-107
Alignment gi|NP_001138521.1| GPN-loop GTPase 1 isoform d [Homo sapiens]. 335 9e-93
Alignment gi|NP_057385.3| GPN-loop GTPase 3 isoform 1 [Homo sapiens]. 93 4e-19
Alignment gi|NP_060536.3| GPN-loop GTPase 2 [Homo sapiens]. 89 6e-18
Alignment gi|NP_001157845.1| GPN-loop GTPase 3 isoform 3 [Homo sapiens]. 85 1e-16
Alignment gi|NP_001157844.1| GPN-loop GTPase 3 isoform 2 [Homo sapiens]. 78 1e-14
>ref|NP_009197.2| GPN-loop GTPase 1 isoform a [Homo sapiens].
Length = 388
Score = 529 bits (1362), Expect = e-150
Identities = 274/323 (84%), Positives = 280/323 (86%)
Frame = +2
Query: 41 RSKMAAPEAATVPQASGGPRAPACLLVLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDP 220
R KMAA AA QASGGPR P CLLVLGMAGSGKTTFVQRLTGHLH+QG+PPYVINLDP
Sbjct: 12 RRKMAASAAAAELQASGGPRHPVCLLVLGMAGSGKTTFVQRLTGHLHAQGTPPYVINLDP 71
Query: 221 AVHEVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNTSK 400
AVHEVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQN SK
Sbjct: 72 AVHEVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNMSK 131
Query: 401 YVLIDTPGQIEVFTWSASGTIITEALASSFPTIVVYVMDTSRSTNPVTFMSNMLYACSIL 580
YVLIDTPGQIEVFTWSASGTIITEALASSFPT+V+YVMDTSRSTNPVTFMSNMLYACSIL
Sbjct: 132 YVLIDTPGQIEVFTWSASGTIITEALASSFPTVVIYVMDTSRSTNPVTFMSNMLYACSIL 191
Query: 581 YKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSS 760
YKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSS
Sbjct: 192 YKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSS 251
Query: 761 LRVVGVSAVLGTGLDEFFVQVASAAXXXXXXXXXXXXXLKKSLANAXXXXXXXXXXXXXX 940
LRVVGVSAVLGTGLDE FVQV SAA LKKSLANA
Sbjct: 252 LRVVGVSAVLGTGLDELFVQVTSAAEEYEREYRPEYERLKKSLANAESQQQREQLERLRK 311
Query: 941 DMGSIALDTGTATGSSSPMLDPS 1009
DMGS+ALD GTA S SP+L PS
Sbjct: 312 DMGSVALDAGTAKDSLSPVLHPS 334
>ref|NP_001138519.1| GPN-loop GTPase 1 isoform b [Homo sapiens].
Length = 362
Score = 474 bits (1221), Expect = e-134
Identities = 247/305 (80%), Positives = 257/305 (84%)
Frame = +2
Query: 95 PRAPACLLVLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAVHEVPFPANIDIRDTVK 274
PR +L++ K F +RLTGHLH+QG+PPYVINLDPAVHEVPFPANIDIRDTVK
Sbjct: 10 PRCTGIVLLI------KLRFSERLTGHLHAQGTPPYVINLDPAVHEVPFPANIDIRDTVK 63
Query: 275 YKEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNTSKYVLIDTPGQIEVFTWSAS 454
YKEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQN SKYVLIDTPGQIEVFTWSAS
Sbjct: 64 YKEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNMSKYVLIDTPGQIEVFTWSAS 123
Query: 455 GTIITEALASSFPTIVVYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIID 634
GTIITEALASSFPT+V+YVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIID
Sbjct: 124 GTIITEALASSFPTVVIYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIID 183
Query: 635 HSFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRVVGVSAVLGTGLDEFF 814
HSFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRVVGVSAVLGTGLDE F
Sbjct: 184 HSFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRVVGVSAVLGTGLDELF 243
Query: 815 VQVASAAXXXXXXXXXXXXXLKKSLANAXXXXXXXXXXXXXXDMGSIALDTGTATGSSSP 994
VQV SAA LKKSLANA DMGS+ALD GTA S SP
Sbjct: 244 VQVTSAAEEYEREYRPEYERLKKSLANAESQQQREQLERLRKDMGSVALDAGTAKDSLSP 303
Query: 995 MLDPS 1009
+L PS
Sbjct: 304 VLHPS 308
>ref|NP_001138520.1| GPN-loop GTPase 1 isoform c [Homo sapiens].
Length = 295
Score = 386 bits (991), Expect = e-107
Identities = 202/241 (83%), Positives = 206/241 (85%)
Frame = +2
Query: 287 MKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNTSKYVLIDTPGQIEVFTWSASGTII 466
MKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQN SKYVLIDTPGQIEVFTWSASGTII
Sbjct: 1 MKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNMSKYVLIDTPGQIEVFTWSASGTII 60
Query: 467 TEALASSFPTIVVYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFA 646
TEALASSFPT+V+YVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFA
Sbjct: 61 TEALASSFPTVVIYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFA 120
Query: 647 VEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRVVGVSAVLGTGLDEFFVQVA 826
VEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRVVGVSAVLGTGLDE FVQV
Sbjct: 121 VEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRVVGVSAVLGTGLDELFVQVT 180
Query: 827 SAAXXXXXXXXXXXXXLKKSLANAXXXXXXXXXXXXXXDMGSIALDTGTATGSSSPMLDP 1006
SAA LKKSLANA DMGS+ALD GTA S SP+L P
Sbjct: 181 SAAEEYEREYRPEYERLKKSLANAESQQQREQLERLRKDMGSVALDAGTAKDSLSPVLHP 240
Query: 1007 S 1009
S
Sbjct: 241 S 241
>ref|NP_001138521.1| GPN-loop GTPase 1 isoform d [Homo sapiens].
Length = 279
Score = 335 bits (860), Expect(2) = 9e-93
Identities = 177/216 (81%), Positives = 181/216 (83%)
Frame = +2
Query: 362 VMKFIEKAQNTSKYVLIDTPGQIEVFTWSASGTIITEALASSFPTIVVYVMDTSRSTNPV 541
VMKFIEKAQN SKYVLIDTPGQIEVFTWSASGTIITEALASSFPT+V+YVMDTSRSTNPV
Sbjct: 10 VMKFIEKAQNMSKYVLIDTPGQIEVFTWSASGTIITEALASSFPTVVIYVMDTSRSTNPV 69
Query: 542 TFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLT 721
TFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLT
Sbjct: 70 TFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLT 129
Query: 722 RSMSLVLDEFYSSLRVVGVSAVLGTGLDEFFVQVASAAXXXXXXXXXXXXXLKKSLANAX 901
RSMSLVLDEFYSSLRVVGVSAVLGTGLDE FVQV SAA LKKSLANA
Sbjct: 130 RSMSLVLDEFYSSLRVVGVSAVLGTGLDELFVQVTSAAEEYEREYRPEYERLKKSLANAE 189
Query: 902 XXXXXXXXXXXXXDMGSIALDTGTATGSSSPMLDPS 1009
DMGS+ALD GTA S SP+L PS
Sbjct: 190 SQQQREQLERLRKDMGSVALDAGTAKDSLSPVLHPS 225
Score = 24.3 bits (51), Expect(2) = 9e-93
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +3
Query: 228 MKFPFLPILI 257
MKFPFLPIL+
Sbjct: 1 MKFPFLPILV 10
>ref|NP_057385.3| GPN-loop GTPase 3 isoform 1 [Homo sapiens].
Length = 284
Score = 92.8 bits (229), Expect = 4e-19
Identities = 63/226 (27%), Positives = 112/226 (49%), Gaps = 9/226 (3%)
Frame = +2
Query: 116 LVLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAVHEVPFPANIDIRDTVKYKEVMKQ 295
LV+G AGSGK+T+ + H + V+NLDPA + DIR+ ++ +VM+
Sbjct: 7 LVMGPAGSGKSTYCATMVQHCEALNRSVQVVNLDPAAEHFNYSVMADIRELIEVDDVMED 66
Query: 296 YGL--GPNGGIVTSLNLFATRFDQVMKFIEKAQNTSKYVLIDTPGQIEVFTWSASGTIIT 469
L GPNGG+V + FA FD + + ++ Y+L D PGQIE++T +
Sbjct: 67 DSLRFGPNGGLVFCMEYFANNFDWLENCLGHVED--DYILFDCPGQIELYTHLPVMKQLV 124
Query: 470 EALAS-SFPTIVVYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFA 646
+ L F V+++D+ F+S +L A S + ++P + +M K D++
Sbjct: 125 QQLEQWEFRVCGVFLVDSQFMVESFKFISGILAALSAMISLEIPQVNIMTKMDLLSKKAK 184
Query: 647 VEWMQDFEAFQDALNQETT------YVSNLTRSMSLVLDEFYSSLR 766
E + + +L +++T LT+++ ++D+ YS +R
Sbjct: 185 KEIEKFLDPDMYSLLEDSTSDLRSKKFKKLTKAICGLIDD-YSMVR 229
>ref|NP_060536.3| GPN-loop GTPase 2 [Homo sapiens].
Length = 310
Score = 89.0 bits (219), Expect = 6e-18
Identities = 53/186 (28%), Positives = 93/186 (50%), Gaps = 1/186 (0%)
Frame = +2
Query: 83 ASGGPRAPACLLVLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAVHEVPFPANIDIR 262
A P V+G GSGKTT+ ++ L + G V+NLDPA +P+ +D+
Sbjct: 2 AGAAPTTAFGQAVIGPPGSGKTTYCLGMSEFLRALGRRVAVVNLDPANEGLPYECAVDVG 61
Query: 263 DTVKYKEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNTSKYVLIDTPGQIEVFT 442
+ V +VM LGPNGG++ + D + ++ + Y L D PGQ+E+ T
Sbjct: 62 ELVGLGDVMDALRLGPNGGLLYCMEYLEANLDWLRAKLDPLR--GHYFLFDCPGQVELCT 119
Query: 443 -WSASGTIITEALASSFPTIVVYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNK 619
A +I ++ V+++D+ T+P F+S + + + + +LP I +++K
Sbjct: 120 HHGALRSIFSQMAQWDLRLTAVHLVDSHYCTDPAKFISVLCTSLATMLHVELPHINLLSK 179
Query: 620 TDIIDH 637
D+I+H
Sbjct: 180 MDLIEH 185
>ref|NP_001157845.1| GPN-loop GTPase 3 isoform 3 [Homo sapiens].
Length = 294
Score = 84.7 bits (208), Expect = 1e-16
Identities = 63/236 (26%), Positives = 112/236 (47%), Gaps = 19/236 (8%)
Frame = +2
Query: 116 LVLGMAGSGK----------TTFVQRLTGHLHSQGSPPYVINLDPAVHEVPFPANIDIRD 265
LV+G AGSGK +T+ + H + V+NLDPA + DIR+
Sbjct: 7 LVMGPAGSGKVRICGDKERKSTYCATMVQHCEALNRSVQVVNLDPAAEHFNYSVMADIRE 66
Query: 266 TVKYKEVMKQYGL--GPNGGIVTSLNLFATRFDQVMKFIEKAQNTSKYVLIDTPGQIEVF 439
++ +VM+ L GPNGG+V + FA FD + + ++ Y+L D PGQIE++
Sbjct: 67 LIEVDDVMEDDSLRFGPNGGLVFCMEYFANNFDWLENCLGHVED--DYILFDCPGQIELY 124
Query: 440 TWSASGTIITEALAS-SFPTIVVYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMN 616
T + + L F V+++D+ F+S +L A S + ++P + +M
Sbjct: 125 THLPVMKQLVQQLEQWEFRVCGVFLVDSQFMVESFKFISGILAALSAMISLEIPQVNIMT 184
Query: 617 KTDIIDHSFAVEWMQDFEAFQDALNQETT------YVSNLTRSMSLVLDEFYSSLR 766
K D++ E + + +L +++T LT+++ ++D+ YS +R
Sbjct: 185 KMDLLSKKAKKEIEKFLDPDMYSLLEDSTSDLRSKKFKKLTKAICGLIDD-YSMVR 239
>ref|NP_001157844.1| GPN-loop GTPase 3 isoform 2 [Homo sapiens].
Length = 323
Score = 78.2 bits (191), Expect = 1e-14
Identities = 55/217 (25%), Positives = 104/217 (47%), Gaps = 9/217 (4%)
Frame = +2
Query: 143 KTTFVQRLTGHLHSQGSPPYVINLDPAVHEVPFPANIDIRDTVKYKEVMKQYGL--GPNG 316
++T+ + H + V+NLDPA + DIR+ ++ +VM+ L GPNG
Sbjct: 55 QSTYCATMVQHCEALNRSVQVVNLDPAAEHFNYSVMADIRELIEVDDVMEDDSLRFGPNG 114
Query: 317 GIVTSLNLFATRFDQVMKFIEKAQNTSKYVLIDTPGQIEVFTWSASGTIITEALAS-SFP 493
G+V + FA FD + + ++ Y+L D PGQIE++T + + L F
Sbjct: 115 GLVFCMEYFANNFDWLENCLGHVED--DYILFDCPGQIELYTHLPVMKQLVQQLEQWEFR 172
Query: 494 TIVVYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEA 673
V+++D+ F+S +L A S + ++P + +M K D++ E + +
Sbjct: 173 VCGVFLVDSQFMVESFKFISGILAALSAMISLEIPQVNIMTKMDLLSKKAKKEIEKFLDP 232
Query: 674 FQDALNQETT------YVSNLTRSMSLVLDEFYSSLR 766
+L +++T LT+++ ++D+ YS +R
Sbjct: 233 DMYSLLEDSTSDLRSKKFKKLTKAICGLIDD-YSMVR 268
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,501,210
Number of extensions: 1176473
Number of successful extensions: 3814
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3792
Number of HSP's successfully gapped: 9
Length of query: 336
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 233
Effective length of database: 14,901,872
Effective search space: 3472136176
Effective search space used: 3472136176
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014005
(1010 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 295 2e-77
>Sscrofa_Chr03
|| Length = 144787322
Score = 295 bits (149), Expect = 2e-77
Identities = 149/149 (100%)
Strand = Plus / Minus
Query: 620 actgacatcattgatcacagctttgcagtggaatggatgcaggattttgaggctttccaa 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118519276 actgacatcattgatcacagctttgcagtggaatggatgcaggattttgaggctttccaa 118519217
Query: 680 gatgccttgaatcaagagactacatacgtcagtaacctgactcgttcaatgagcctggtg 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118519216 gatgccttgaatcaagagactacatacgtcagtaacctgactcgttcaatgagcctggtg 118519157
Query: 740 ttagatgagttttacagctcactcagggt 768
|||||||||||||||||||||||||||||
Sbjct: 118519156 ttagatgagttttacagctcactcagggt 118519128
Score = 238 bits (120), Expect = 5e-60
Identities = 120/120 (100%)
Strand = Plus / Minus
Query: 41 aggagcaagatggctgcgcccgaagctgccacggtgccgcaagcttccgggggtccccgg 100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118531375 aggagcaagatggctgcgcccgaagctgccacggtgccgcaagcttccgggggtccccgg 118531316
Query: 101 gctccggcgtgcctgttggtgctgggaatggcggggtctgggaaaaccacctttgtacag 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118531315 gctccggcgtgcctgttggtgctgggaatggcggggtctgggaaaaccacctttgtacag 118531256
Score = 192 bits (97), Expect = 3e-46
Identities = 97/97 (100%)
Strand = Plus / Minus
Query: 158 cagaggctcaccggacatctgcatagtcaaggctctccaccttatgtgatcaacctggac 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118530566 cagaggctcaccggacatctgcatagtcaaggctctccaccttatgtgatcaacctggac 118530507
Query: 218 ccagctgtgcatgaagttccctttcctgccaatattg 254
|||||||||||||||||||||||||||||||||||||
Sbjct: 118530506 ccagctgtgcatgaagttccctttcctgccaatattg 118530470
Score = 184 bits (93), Expect = 6e-44
Identities = 93/93 (100%)
Strand = Plus / Minus
Query: 889 ggccaatgcacaaagccagcagcagaaagagcaactggaacgccttcagaaagatatggg 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118515321 ggccaatgcacaaagccagcagcagaaagagcaactggaacgccttcagaaagatatggg 118515262
Query: 949 ctctatagccctggacacagggaccgccacagg 981
|||||||||||||||||||||||||||||||||
Sbjct: 118515261 ctctatagccctggacacagggaccgccacagg 118515229
Score = 182 bits (92), Expect = 2e-43
Identities = 95/96 (98%)
Strand = Plus / Minus
Query: 478 ggcatcctcgtttccaacgattgtcgtttacgtaatggacacttctcgaagtaccaatcc 537
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 118521189 ggcatcctcgtttccaacgattgtcatttacgtaatggacacttctcgaagtaccaatcc 118521130
Query: 538 agtgaccttcatgtccaatatgctctatgcctgcag 573
||||||||||||||||||||||||||||||||||||
Sbjct: 118521129 agtgaccttcatgtccaatatgctctatgcctgcag 118521094
Score = 167 bits (84), Expect = 1e-38
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 766 ggtggtgggtgtgtctgctgtgctgggtacaggcttagatgaattcttcgtgcaagtcgc 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118517587 ggtggtgggtgtgtctgctgtgctgggtacaggcttagatgaattcttcgtgcaagtcgc 118517528
Query: 826 cagtgccgcggaagaatatgagag 849
||||||||||||||||||||||||
Sbjct: 118517527 cagtgccgcggaagaatatgagag 118517504
Score = 159 bits (80), Expect = 4e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 400 gtatgtcttaattgacacacctggacagattgaagtgttcacctggtcagcttctgggac 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118521473 gtatgtcttaattgacacacctggacagattgaagtgttcacctggtcagcttctgggac 118521414
Query: 460 aatcatcactgaggccctgg 479
||||||||||||||||||||
Sbjct: 118521413 aatcatcactgaggccctgg 118521394
Score = 137 bits (69), Expect = 1e-29
Identities = 69/69 (100%)
Strand = Plus / Minus
Query: 295 gtatggacttggaccgaacggcggcatagtgacctcactcaatctctttgctaccagatt 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118526517 gtatggacttggaccgaacggcggcatagtgacctcactcaatctctttgctaccagatt 118526458
Query: 355 tgatcaggt 363
|||||||||
Sbjct: 118526457 tgatcaggt 118526449
Score = 97.6 bits (49), Expect = 1e-17
Identities = 49/49 (100%)
Strand = Plus / Minus
Query: 571 cagcatcttgtacaaaaccaagctgccttttattgtggtcatgaataaa 619
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118519698 cagcatcttgtacaaaaccaagctgccttttattgtggtcatgaataaa 118519650
Score = 89.7 bits (45), Expect = 3e-15
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 254 gatattcgtgacactgtgaagtataaagaagtcatgaaacagtat 298
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118527340 gatattcgtgacactgtgaagtataaagaagtcatgaaacagtat 118527296
Score = 85.7 bits (43), Expect = 4e-14
Identities = 43/43 (100%)
Strand = Plus / Minus
Query: 848 agagagtatcgtcctgaatatgaacgtttgaagaaatcactgg 890
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118515958 agagagtatcgtcctgaatatgaacgtttgaagaaatcactgg 118515916
Score = 83.8 bits (42), Expect = 2e-13
Identities = 42/42 (100%)
Strand = Plus / Minus
Query: 360 aggtgatgaaattcattgagaaggcccagaacacatctaagt 401
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118525465 aggtgatgaaattcattgagaaggcccagaacacatctaagt 118525424
Score = 63.9 bits (32), Expect = 2e-07
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 979 aggcagctcatctcctatgctggacccatctg 1010
||||||||||||||||||||||||||||||||
Sbjct: 118510786 aggcagctcatctcctatgctggacccatctg 118510755
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,828,009
Number of extensions: 139
Number of successful extensions: 139
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 13
Length of query: 1010
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 989
Effective length of database: 2,808,413,156
Effective search space: 2777520611284
Effective search space used: 2777520611284
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)