Animal-Genome cDNA 20110601C-014012

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-014012
         (1240 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_543889.2| PREDICTED: similar to Tubulin alpha-8 chain (Al...   647   0.0  
Alignment   gi|XP_853268.1| PREDICTED: similar to Tubulin alpha-2 chain (Al...   594   e-170
Alignment   gi|XP_534765.2| PREDICTED: similar to Tubulin alpha-3 chain (Al...   593   e-169
Alignment   gi|XP_860145.1| PREDICTED: similar to tubulin, alpha 2 isoform ...   593   e-169
Alignment   gi|XP_849904.1| PREDICTED: similar to Tubulin alpha-3 chain (Al...   593   e-169
Alignment   gi|XP_851095.1| PREDICTED: similar to Tubulin alpha-2 chain (Al...   592   e-169
Alignment   gi|XP_862226.1| PREDICTED: similar to tubulin, alpha 2 isoform ...   590   e-169
Alignment   gi|XP_850665.1| PREDICTED: similar to Tubulin alpha-2 chain (Al...   590   e-169
Alignment   gi|XP_862547.1| PREDICTED: similar to tubulin, alpha 1 isoform ...   590   e-169
Alignment   gi|XP_862523.1| PREDICTED: similar to tubulin, alpha 1 isoform ...   590   e-169

>ref|XP_543889.2| PREDICTED: similar to Tubulin alpha-8 chain (Alpha-tubulin 8) [Canis
            familiaris].
          Length = 449

 Score =  647 bits (1668), Expect = 0.0
 Identities = 326/371 (87%), Positives = 333/371 (89%), Gaps = 8/371 (2%)
 Frame = +2

Query: 152  ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKLHDDDSFTTFFSETGNGKHV 331
            ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFG Q SK++DDDSFTTFFSETGNGKHV
Sbjct: 3    ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGVQGSKVNDDDSFTTFFSETGNGKHV 62

Query: 332  PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI 511
            PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI
Sbjct: 63   PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI 122

Query: 512  RKLTDACSGLQGFLIFHXXXXXXXXXXXXLLMERLSLDYGKKSKLEFAIYPAPQVSTAVV 691
            RKLTDACSGLQGFLIFH            LLMERLSLDYGKKSKLEFAIYPAPQVSTAVV
Sbjct: 123  RKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTAVV 182

Query: 692  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 871
            EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL
Sbjct: 183  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 242

Query: 872  RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM 1051
            RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM
Sbjct: 243  RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM 302

Query: 1052 VKCDPRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR--------PSSL*TGVHRXSGGH 1207
            VKCDPRHGKYMACCMLYRGDVVP D +VAIAAI+TKR        P+    G++      
Sbjct: 303  VKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGIN------ 356

Query: 1208 XLQPPDGVPGG 1240
              QPP  VPGG
Sbjct: 357  -YQPPTVVPGG 366


>ref|XP_853268.1| PREDICTED: similar to Tubulin alpha-2 chain (Alpha-tubulin 2) [Canis
            familiaris].
          Length = 460

 Score =  594 bits (1531), Expect = e-170
 Identities = 297/371 (80%), Positives = 315/371 (84%), Gaps = 8/371 (2%)
 Frame = +2

Query: 152  ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKLHDDDSFTTFFSETGNGKHV 331
            ECISVHVGQAGVQIGNACWEL+CLEHGIQ DG   +  +    DDSF TFFSETG GKHV
Sbjct: 12   ECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHV 71

Query: 332  PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI 511
            PRAV VDLEPTV+DEVR GTYRQLFHPEQLITGKEDAANNYARGHYT+GKE IDLVLDRI
Sbjct: 72   PRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLDRI 131

Query: 512  RKLTDACSGLQGFLIFHXXXXXXXXXXXXLLMERLSLDYGKKSKLEFAIYPAPQVSTAVV 691
            RKL D C+GLQGFLIFH            LLMERLS+DYGKKSKLEF+IYPAPQVSTAVV
Sbjct: 132  RKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVV 191

Query: 692  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 871
            EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL
Sbjct: 192  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 251

Query: 872  RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM 1051
            RFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHEQLSVAEIT++CFEP +QM
Sbjct: 252  RFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQM 311

Query: 1052 VKCDPRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR--------PSSL*TGVHRXSGGH 1207
            VKCDPRHGKYMACC+LYRGDVVP D + AIAAI+TKR        P+    G++      
Sbjct: 312  VKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGIN------ 365

Query: 1208 XLQPPDGVPGG 1240
              QPP  VPGG
Sbjct: 366  -YQPPTVVPGG 375


>ref|XP_534765.2| PREDICTED: similar to Tubulin alpha-3 chain (Alpha-tubulin 3) [Canis
            familiaris].
          Length = 450

 Score =  593 bits (1529), Expect = e-169
 Identities = 297/371 (80%), Positives = 313/371 (84%), Gaps = 8/371 (2%)
 Frame = +2

Query: 152  ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKLHDDDSFTTFFSETGNGKHV 331
            ECISVHVGQAGVQIGNACWEL+CLEHGIQ DG   +  +    DDSF TFFSETG GKHV
Sbjct: 3    ECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHV 62

Query: 332  PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI 511
            PRAV VDLEPTVVDEVR GTYRQLFHPEQLITGKEDAANNYARGHYT+GKE +DLVLDRI
Sbjct: 63   PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRI 122

Query: 512  RKLTDACSGLQGFLIFHXXXXXXXXXXXXLLMERLSLDYGKKSKLEFAIYPAPQVSTAVV 691
            RKL D C+GLQGFLIFH            LLMERLS+DYGKKSKLEFAIYPAPQVSTAVV
Sbjct: 123  RKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVV 182

Query: 692  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 871
            EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITASL
Sbjct: 183  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASL 242

Query: 872  RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM 1051
            RFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHEQLSVAEIT++CFEP +QM
Sbjct: 243  RFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQM 302

Query: 1052 VKCDPRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR--------PSSL*TGVHRXSGGH 1207
            VKCDPRHGKYMACCMLYRGDVVP D + AIA I+TKR        P+    G++      
Sbjct: 303  VKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGIN------ 356

Query: 1208 XLQPPDGVPGG 1240
              QPP  VPGG
Sbjct: 357  -YQPPTVVPGG 366


>ref|XP_860145.1| PREDICTED: similar to tubulin, alpha 2 isoform 2 isoform 2 [Canis
            familiaris].
          Length = 418

 Score =  593 bits (1528), Expect = e-169
 Identities = 296/371 (79%), Positives = 313/371 (84%), Gaps = 8/371 (2%)
 Frame = +2

Query: 152  ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKLHDDDSFTTFFSETGNGKHV 331
            ECIS+HVGQAGVQIGNACWEL+CLEHGIQ DG   +  +    DDSF TFFSETG GKHV
Sbjct: 3    ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHV 62

Query: 332  PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI 511
            PRAV VDLEPTVVDEVR GTYRQLFHPEQLITGKEDAANNYARGHYT+GKE +DLVLDRI
Sbjct: 63   PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRI 122

Query: 512  RKLTDACSGLQGFLIFHXXXXXXXXXXXXLLMERLSLDYGKKSKLEFAIYPAPQVSTAVV 691
            RKL D C+GLQGFLIFH            LLMERLS+DYGKKSKLEFAIYPAPQVSTAVV
Sbjct: 123  RKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVV 182

Query: 692  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 871
            EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITASL
Sbjct: 183  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASL 242

Query: 872  RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM 1051
            RFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHEQLSVAEIT++CFEP +QM
Sbjct: 243  RFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQM 302

Query: 1052 VKCDPRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR--------PSSL*TGVHRXSGGH 1207
            VKCDPRHGKYMACCMLYRGDVVP D + AIA I+TKR        P+    G++      
Sbjct: 303  VKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGIN------ 356

Query: 1208 XLQPPDGVPGG 1240
              QPP  VPGG
Sbjct: 357  -YQPPTVVPGG 366


>ref|XP_849904.1| PREDICTED: similar to Tubulin alpha-3 chain (Alpha-tubulin 3) isoform
            1 [Canis familiaris].
          Length = 450

 Score =  593 bits (1528), Expect = e-169
 Identities = 296/371 (79%), Positives = 313/371 (84%), Gaps = 8/371 (2%)
 Frame = +2

Query: 152  ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKLHDDDSFTTFFSETGNGKHV 331
            ECIS+HVGQAGVQIGNACWEL+CLEHGIQ DG   +  +    DDSF TFFSETG GKHV
Sbjct: 3    ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHV 62

Query: 332  PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI 511
            PRAV VDLEPTVVDEVR GTYRQLFHPEQLITGKEDAANNYARGHYT+GKE +DLVLDRI
Sbjct: 63   PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRI 122

Query: 512  RKLTDACSGLQGFLIFHXXXXXXXXXXXXLLMERLSLDYGKKSKLEFAIYPAPQVSTAVV 691
            RKL D C+GLQGFLIFH            LLMERLS+DYGKKSKLEFAIYPAPQVSTAVV
Sbjct: 123  RKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVV 182

Query: 692  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 871
            EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITASL
Sbjct: 183  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASL 242

Query: 872  RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM 1051
            RFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHEQLSVAEIT++CFEP +QM
Sbjct: 243  RFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQM 302

Query: 1052 VKCDPRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR--------PSSL*TGVHRXSGGH 1207
            VKCDPRHGKYMACCMLYRGDVVP D + AIA I+TKR        P+    G++      
Sbjct: 303  VKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGIN------ 356

Query: 1208 XLQPPDGVPGG 1240
              QPP  VPGG
Sbjct: 357  -YQPPTVVPGG 366


>ref|XP_851095.1| PREDICTED: similar to Tubulin alpha-2 chain (Alpha-tubulin 2) [Canis
            familiaris].
          Length = 518

 Score =  592 bits (1525), Expect = e-169
 Identities = 294/371 (79%), Positives = 314/371 (84%), Gaps = 8/371 (2%)
 Frame = +2

Query: 152  ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKLHDDDSFTTFFSETGNGKHV 331
            ECIS+HVGQAGVQIGNACWEL+CLEHGIQ DG   +  +    DDSF TFFSETG GKHV
Sbjct: 70   ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHV 129

Query: 332  PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI 511
            PRAV VDLEPTV+DEVR GTYRQLFHPEQLITGKEDAANNYARGHYT+GKE IDLVLDRI
Sbjct: 130  PRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRI 189

Query: 512  RKLTDACSGLQGFLIFHXXXXXXXXXXXXLLMERLSLDYGKKSKLEFAIYPAPQVSTAVV 691
            RKL D C+GLQGFL+FH            LLMERLS+DYGKKSKLEF+IYPAPQVSTAVV
Sbjct: 190  RKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVV 249

Query: 692  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 871
            EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL
Sbjct: 250  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 309

Query: 872  RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM 1051
            RFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHEQLSVAEIT++CFEP +QM
Sbjct: 310  RFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQM 369

Query: 1052 VKCDPRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR--------PSSL*TGVHRXSGGH 1207
            VKCDPRHGKYMACC+LYRGDVVP D + AIA I+TKR        P+    G++      
Sbjct: 370  VKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGIN------ 423

Query: 1208 XLQPPDGVPGG 1240
              QPP  VPGG
Sbjct: 424  -YQPPTVVPGG 433


>ref|XP_862226.1| PREDICTED: similar to tubulin, alpha 2 isoform 2 isoform 11 [Canis
            familiaris].
          Length = 417

 Score =  590 bits (1522), Expect = e-169
 Identities = 293/371 (78%), Positives = 314/371 (84%), Gaps = 8/371 (2%)
 Frame = +2

Query: 152  ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKLHDDDSFTTFFSETGNGKHV 331
            ECIS+HVGQAGVQIGNACWEL+CLEHGIQ DG   +  +    DDSF TFFSETG GKHV
Sbjct: 3    ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHV 62

Query: 332  PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI 511
            PRAV VDLEPTV+DEVR GTYRQLFHPEQLITGKEDAANNYARGHYT+GKE IDLVLDRI
Sbjct: 63   PRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRI 122

Query: 512  RKLTDACSGLQGFLIFHXXXXXXXXXXXXLLMERLSLDYGKKSKLEFAIYPAPQVSTAVV 691
            RKL D C+GLQGFL+FH            LLMERLS+DYGKKSKLEF+IYPAPQVSTAVV
Sbjct: 123  RKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVV 182

Query: 692  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 871
            EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL
Sbjct: 183  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 242

Query: 872  RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM 1051
            RFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHEQL+VAEIT++CFEP +QM
Sbjct: 243  RFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQM 302

Query: 1052 VKCDPRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR--------PSSL*TGVHRXSGGH 1207
            VKCDPRHGKYMACC+LYRGDVVP D + AIA I+TKR        P+    G++      
Sbjct: 303  VKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGIN------ 356

Query: 1208 XLQPPDGVPGG 1240
              QPP  VPGG
Sbjct: 357  -YQPPTVVPGG 366


>ref|XP_850665.1| PREDICTED: similar to Tubulin alpha-2 chain (Alpha-tubulin 2) isoform
            2 [Canis familiaris].
          Length = 449

 Score =  590 bits (1522), Expect = e-169
 Identities = 293/371 (78%), Positives = 314/371 (84%), Gaps = 8/371 (2%)
 Frame = +2

Query: 152  ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKLHDDDSFTTFFSETGNGKHV 331
            ECIS+HVGQAGVQIGNACWEL+CLEHGIQ DG   +  +    DDSF TFFSETG GKHV
Sbjct: 3    ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHV 62

Query: 332  PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI 511
            PRAV VDLEPTV+DEVR GTYRQLFHPEQLITGKEDAANNYARGHYT+GKE IDLVLDRI
Sbjct: 63   PRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRI 122

Query: 512  RKLTDACSGLQGFLIFHXXXXXXXXXXXXLLMERLSLDYGKKSKLEFAIYPAPQVSTAVV 691
            RKL D C+GLQGFL+FH            LLMERLS+DYGKKSKLEF+IYPAPQVSTAVV
Sbjct: 123  RKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVV 182

Query: 692  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 871
            EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL
Sbjct: 183  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 242

Query: 872  RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM 1051
            RFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHEQL+VAEIT++CFEP +QM
Sbjct: 243  RFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQM 302

Query: 1052 VKCDPRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR--------PSSL*TGVHRXSGGH 1207
            VKCDPRHGKYMACC+LYRGDVVP D + AIA I+TKR        P+    G++      
Sbjct: 303  VKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGIN------ 356

Query: 1208 XLQPPDGVPGG 1240
              QPP  VPGG
Sbjct: 357  -YQPPTVVPGG 366


>ref|XP_862547.1| PREDICTED: similar to tubulin, alpha 1 isoform 13 [Canis familiaris].
          Length = 451

 Score =  590 bits (1521), Expect = e-169
 Identities = 293/371 (78%), Positives = 313/371 (84%), Gaps = 8/371 (2%)
 Frame = +2

Query: 152  ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKLHDDDSFTTFFSETGNGKHV 331
            ECIS+HVGQAGVQIGNACWEL+CLEHGIQ DG   +  +    DDSF TFFSETG GKHV
Sbjct: 3    ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHV 62

Query: 332  PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI 511
            PRAV VDLEPTV+DEVR GTYRQLFHPEQLITGKEDAANNYARGHYT+GKE IDLVLDRI
Sbjct: 63   PRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRI 122

Query: 512  RKLTDACSGLQGFLIFHXXXXXXXXXXXXLLMERLSLDYGKKSKLEFAIYPAPQVSTAVV 691
            RKL D C+GLQGFL+FH            LLMERLS+DYGKKSKLEF+IYPAPQVSTAVV
Sbjct: 123  RKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVV 182

Query: 692  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 871
            EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITASL
Sbjct: 183  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASL 242

Query: 872  RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM 1051
            RFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHEQLSVAEIT++CFEP +QM
Sbjct: 243  RFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQM 302

Query: 1052 VKCDPRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR--------PSSL*TGVHRXSGGH 1207
            VKCDPRHGKYMACC+LYRGDVVP D + AIA I+TKR        P+    G++      
Sbjct: 303  VKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGIN------ 356

Query: 1208 XLQPPDGVPGG 1240
              QPP  VPGG
Sbjct: 357  -YQPPTVVPGG 366


>ref|XP_862523.1| PREDICTED: similar to tubulin, alpha 1 isoform 12 [Canis familiaris].
          Length = 451

 Score =  590 bits (1521), Expect = e-169
 Identities = 293/371 (78%), Positives = 313/371 (84%), Gaps = 8/371 (2%)
 Frame = +2

Query: 152  ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKLHDDDSFTTFFSETGNGKHV 331
            ECIS+HVGQAGVQIGNACWEL+CLEHGIQ DG   +  +    DDSF TFFSETG GKHV
Sbjct: 3    ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHV 62

Query: 332  PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI 511
            PRAV VDLEPTV+DEVR GTYRQLFHPEQLITGKEDAANNYARGHYT+GKE IDLVLDRI
Sbjct: 63   PRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRI 122

Query: 512  RKLTDACSGLQGFLIFHXXXXXXXXXXXXLLMERLSLDYGKKSKLEFAIYPAPQVSTAVV 691
            RKL D C+GLQGFL+FH            LLMERLS+DYGKKSKLEF+IYPAPQVSTAVV
Sbjct: 123  RKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVV 182

Query: 692  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 871
            EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITASL
Sbjct: 183  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASL 242

Query: 872  RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM 1051
            RFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHEQLSVAEIT++CFEP +QM
Sbjct: 243  RFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQM 302

Query: 1052 VKCDPRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR--------PSSL*TGVHRXSGGH 1207
            VKCDPRHGKYMACC+LYRGDVVP D + AIA I+TKR        P+    G++      
Sbjct: 303  VKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGIN------ 356

Query: 1208 XLQPPDGVPGG 1240
              QPP  VPGG
Sbjct: 357  -YQPPTVVPGG 366


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 51,297,908
Number of extensions: 1578642
Number of successful extensions: 6988
Number of sequences better than 1.0e-05: 98
Number of HSP's gapped: 6817
Number of HSP's successfully gapped: 116
Length of query: 413
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 308
Effective length of database: 15,374,224
Effective search space: 4735260992
Effective search space used: 4735260992
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-014012
         (1240 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001070563.1| tubulin alpha-8 chain [Bos taurus].               651   0.0  
Alignment   gi|NP_001033252.1| tubulin alpha-3 chain [Bos taurus].               593   e-169
Alignment   gi|XP_002694727.1| PREDICTED: GL12416-like [Bos taurus].             593   e-169
Alignment   gi|XP_002701788.1| PREDICTED: GL12416-like [Bos taurus].             593   e-169
Alignment   gi|NP_001108328.1| tubulin alpha-1B chain [Bos taurus].              592   e-169
Alignment   gi|NP_001039875.1| tubulin alpha-1D chain [Bos taurus].              591   e-169
Alignment   gi|NP_001159977.1| tubulin alpha-1B chain [Bos taurus].              590   e-169
Alignment   gi|NP_001029376.1| tubulin alpha-1C chain [Bos taurus].              588   e-168
Alignment   gi|NP_001071626.1| tubulin alpha-4A chain [Bos taurus].              587   e-168
Alignment   gi|XP_001790595.1| PREDICTED: tubulin alpha-1C chain-like [Bos ...   586   e-167

>ref|NP_001070563.1| tubulin alpha-8 chain [Bos taurus].
          Length = 449

 Score =  651 bits (1679), Expect = 0.0
 Identities = 328/371 (88%), Positives = 334/371 (90%), Gaps = 8/371 (2%)
 Frame = +2

Query: 152  ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKLHDDDSFTTFFSETGNGKHV 331
            ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASK+HDDDSFTTFFSETGNGKHV
Sbjct: 3    ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKIHDDDSFTTFFSETGNGKHV 62

Query: 332  PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI 511
            PRAVMVDLEPTVVDEVRAGTYR LFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI
Sbjct: 63   PRAVMVDLEPTVVDEVRAGTYRHLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI 122

Query: 512  RKLTDACSGLQGFLIFHXXXXXXXXXXXXLLMERLSLDYGKKSKLEFAIYPAPQVSTAVV 691
            RKLTDACSGLQGFLIFH            LLMERLSLDYGKKSKLEFAIYPAPQVSTAVV
Sbjct: 123  RKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTAVV 182

Query: 692  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 871
            EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL
Sbjct: 183  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 242

Query: 872  RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM 1051
            RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM
Sbjct: 243  RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM 302

Query: 1052 VKCDPRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR--------PSSL*TGVHRXSGGH 1207
            VKCDPRHGKYMACCMLYRGDVVP D +VAIAAI+TKR        P+    G++      
Sbjct: 303  VKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGIN------ 356

Query: 1208 XLQPPDGVPGG 1240
              QPP  VPGG
Sbjct: 357  -YQPPTVVPGG 366


>ref|NP_001033252.1| tubulin alpha-3 chain [Bos taurus].
          Length = 450

 Score =  593 bits (1528), Expect = e-169
 Identities = 296/371 (79%), Positives = 313/371 (84%), Gaps = 8/371 (2%)
 Frame = +2

Query: 152  ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKLHDDDSFTTFFSETGNGKHV 331
            ECIS+HVGQAGVQIGNACWEL+CLEHGIQ DG   +  +    DDSF TFFSETG GKHV
Sbjct: 3    ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHV 62

Query: 332  PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI 511
            PRAV VDLEPTVVDEVR GTYRQLFHPEQLITGKEDAANNYARGHYT+GKE +DLVLDRI
Sbjct: 63   PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRI 122

Query: 512  RKLTDACSGLQGFLIFHXXXXXXXXXXXXLLMERLSLDYGKKSKLEFAIYPAPQVSTAVV 691
            RKL D C+GLQGFLIFH            LLMERLS+DYGKKSKLEFAIYPAPQVSTAVV
Sbjct: 123  RKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVV 182

Query: 692  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 871
            EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITASL
Sbjct: 183  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASL 242

Query: 872  RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM 1051
            RFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHEQLSVAEIT++CFEP +QM
Sbjct: 243  RFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQM 302

Query: 1052 VKCDPRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR--------PSSL*TGVHRXSGGH 1207
            VKCDPRHGKYMACCMLYRGDVVP D + AIA I+TKR        P+    G++      
Sbjct: 303  VKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGIN------ 356

Query: 1208 XLQPPDGVPGG 1240
              QPP  VPGG
Sbjct: 357  -YQPPTVVPGG 366


>ref|XP_002694727.1| PREDICTED: GL12416-like [Bos taurus].
          Length = 450

 Score =  593 bits (1528), Expect = e-169
 Identities = 296/371 (79%), Positives = 313/371 (84%), Gaps = 8/371 (2%)
 Frame = +2

Query: 152  ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKLHDDDSFTTFFSETGNGKHV 331
            ECIS+HVGQAGVQIGNACWEL+CLEHGIQ DG   +  +    DDSF TFFSETG GKHV
Sbjct: 3    ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHV 62

Query: 332  PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI 511
            PRAV VDLEPTVVDEVR GTYRQLFHPEQLITGKEDAANNYARGHYT+GKE +DLVLDRI
Sbjct: 63   PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRI 122

Query: 512  RKLTDACSGLQGFLIFHXXXXXXXXXXXXLLMERLSLDYGKKSKLEFAIYPAPQVSTAVV 691
            RKL D C+GLQGFLIFH            LLMERLS+DYGKKSKLEFAIYPAPQVSTAVV
Sbjct: 123  RKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVV 182

Query: 692  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 871
            EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITASL
Sbjct: 183  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASL 242

Query: 872  RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM 1051
            RFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHEQLSVAEIT++CFEP +QM
Sbjct: 243  RFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQM 302

Query: 1052 VKCDPRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR--------PSSL*TGVHRXSGGH 1207
            VKCDPRHGKYMACCMLYRGDVVP D + AIA I+TKR        P+    G++      
Sbjct: 303  VKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGIN------ 356

Query: 1208 XLQPPDGVPGG 1240
              QPP  VPGG
Sbjct: 357  -YQPPTVVPGG 366


>ref|XP_002701788.1| PREDICTED: GL12416-like [Bos taurus].
          Length = 450

 Score =  593 bits (1528), Expect = e-169
 Identities = 296/371 (79%), Positives = 313/371 (84%), Gaps = 8/371 (2%)
 Frame = +2

Query: 152  ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKLHDDDSFTTFFSETGNGKHV 331
            ECIS+HVGQAGVQIGNACWEL+CLEHGIQ DG   +  +    DDSF TFFSETG GKHV
Sbjct: 3    ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHV 62

Query: 332  PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI 511
            PRAV VDLEPTVVDEVR GTYRQLFHPEQLITGKEDAANNYARGHYT+GKE +DLVLDRI
Sbjct: 63   PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRI 122

Query: 512  RKLTDACSGLQGFLIFHXXXXXXXXXXXXLLMERLSLDYGKKSKLEFAIYPAPQVSTAVV 691
            RKL D C+GLQGFLIFH            LLMERLS+DYGKKSKLEFAIYPAPQVSTAVV
Sbjct: 123  RKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVV 182

Query: 692  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 871
            EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITASL
Sbjct: 183  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASL 242

Query: 872  RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM 1051
            RFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHEQLSVAEIT++CFEP +QM
Sbjct: 243  RFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQM 302

Query: 1052 VKCDPRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR--------PSSL*TGVHRXSGGH 1207
            VKCDPRHGKYMACCMLYRGDVVP D + AIA I+TKR        P+    G++      
Sbjct: 303  VKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGIN------ 356

Query: 1208 XLQPPDGVPGG 1240
              QPP  VPGG
Sbjct: 357  -YQPPTVVPGG 366


>ref|NP_001108328.1| tubulin alpha-1B chain [Bos taurus].
          Length = 451

 Score =  592 bits (1525), Expect = e-169
 Identities = 294/371 (79%), Positives = 314/371 (84%), Gaps = 8/371 (2%)
 Frame = +2

Query: 152  ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKLHDDDSFTTFFSETGNGKHV 331
            ECIS+HVGQAGVQIGNACWEL+CLEHGIQ DG   +  +    DDSF TFFSETG GKHV
Sbjct: 3    ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHV 62

Query: 332  PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI 511
            PRAV VDLEPTV+DEVR GTYRQLFHPEQLITGKEDAANNYARGHYT+GKE IDLVLDRI
Sbjct: 63   PRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRI 122

Query: 512  RKLTDACSGLQGFLIFHXXXXXXXXXXXXLLMERLSLDYGKKSKLEFAIYPAPQVSTAVV 691
            RKL D C+GLQGFL+FH            LLMERLS+DYGKKSKLEF+IYPAPQVSTAVV
Sbjct: 123  RKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVV 182

Query: 692  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 871
            EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL
Sbjct: 183  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 242

Query: 872  RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM 1051
            RFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHEQLSVAEIT++CFEP +QM
Sbjct: 243  RFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQM 302

Query: 1052 VKCDPRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR--------PSSL*TGVHRXSGGH 1207
            VKCDPRHGKYMACC+LYRGDVVP D + AIA I+TKR        P+    G++      
Sbjct: 303  VKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGIN------ 356

Query: 1208 XLQPPDGVPGG 1240
              QPP  VPGG
Sbjct: 357  -YQPPTVVPGG 366


>ref|NP_001039875.1| tubulin alpha-1D chain [Bos taurus].
          Length = 452

 Score =  591 bits (1523), Expect = e-169
 Identities = 295/371 (79%), Positives = 313/371 (84%), Gaps = 8/371 (2%)
 Frame = +2

Query: 152  ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKLHDDDSFTTFFSETGNGKHV 331
            ECISVHVGQAGVQIGNACWEL+CLEHGIQ DG   +  +    DDSF TFFSETG GKHV
Sbjct: 3    ECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHV 62

Query: 332  PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI 511
            PRAV VDLEPTV+DEVR GTYRQLFHPEQLITGKEDAANNYARGHYT+GKE IDLVLDRI
Sbjct: 63   PRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLDRI 122

Query: 512  RKLTDACSGLQGFLIFHXXXXXXXXXXXXLLMERLSLDYGKKSKLEFAIYPAPQVSTAVV 691
            RKL D C+GLQGFLIFH            LLMERLS+DYGKKSKLEF+IYPAPQVSTAVV
Sbjct: 123  RKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVV 182

Query: 692  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 871
            EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITASL
Sbjct: 183  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASL 242

Query: 872  RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM 1051
            RFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHEQLSVAEIT++CFEP +QM
Sbjct: 243  RFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQM 302

Query: 1052 VKCDPRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR--------PSSL*TGVHRXSGGH 1207
            VKCDPRHGKYMACC+LYRGDVVP D + AIA I+TKR        P+    G++      
Sbjct: 303  VKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGIN------ 356

Query: 1208 XLQPPDGVPGG 1240
              QPP  VPGG
Sbjct: 357  -YQPPTVVPGG 366


>ref|NP_001159977.1| tubulin alpha-1B chain [Bos taurus].
          Length = 451

 Score =  590 bits (1521), Expect = e-169
 Identities = 293/371 (78%), Positives = 313/371 (84%), Gaps = 8/371 (2%)
 Frame = +2

Query: 152  ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKLHDDDSFTTFFSETGNGKHV 331
            ECIS+HVGQAGVQIGNACWEL+CLEHGIQ DG   +  +    DDSF TFFSETG GKHV
Sbjct: 3    ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHV 62

Query: 332  PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI 511
            PRAV VDLEPTV+DEVR GTYRQLFHPEQLITGKEDAANNYARGHYT+GKE IDLVLDRI
Sbjct: 63   PRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRI 122

Query: 512  RKLTDACSGLQGFLIFHXXXXXXXXXXXXLLMERLSLDYGKKSKLEFAIYPAPQVSTAVV 691
            RKL D C+GLQGFL+FH            LLMERLS+DYGKKSKLEF+IYPAPQVSTAVV
Sbjct: 123  RKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVV 182

Query: 692  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 871
            EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITASL
Sbjct: 183  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASL 242

Query: 872  RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM 1051
            RFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHEQLSVAEIT++CFEP +QM
Sbjct: 243  RFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQM 302

Query: 1052 VKCDPRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR--------PSSL*TGVHRXSGGH 1207
            VKCDPRHGKYMACC+LYRGDVVP D + AIA I+TKR        P+    G++      
Sbjct: 303  VKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGIN------ 356

Query: 1208 XLQPPDGVPGG 1240
              QPP  VPGG
Sbjct: 357  -YQPPTVVPGG 366


>ref|NP_001029376.1| tubulin alpha-1C chain [Bos taurus].
          Length = 449

 Score =  588 bits (1517), Expect = e-168
 Identities = 291/371 (78%), Positives = 314/371 (84%), Gaps = 8/371 (2%)
 Frame = +2

Query: 152  ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKLHDDDSFTTFFSETGNGKHV 331
            ECIS+HVGQAGVQIGNACWEL+CLEHGIQ DG   +  +    DDSF TFFSETG GKHV
Sbjct: 3    ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHV 62

Query: 332  PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI 511
            PRAV VDLEPTV+DEVR GTYRQLFHPEQLI+GKEDAANNYARGHYT+GKE IDLVLDR+
Sbjct: 63   PRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDRV 122

Query: 512  RKLTDACSGLQGFLIFHXXXXXXXXXXXXLLMERLSLDYGKKSKLEFAIYPAPQVSTAVV 691
            RKL D C+GLQGFL+FH            LLMERLS+DYGKKSKLEF+IYPAPQVSTAVV
Sbjct: 123  RKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVV 182

Query: 692  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 871
            EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRL+SQIVSSITASL
Sbjct: 183  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLMSQIVSSITASL 242

Query: 872  RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM 1051
            RFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHEQLSVAEIT++CFEP +QM
Sbjct: 243  RFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQM 302

Query: 1052 VKCDPRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR--------PSSL*TGVHRXSGGH 1207
            VKCDPRHGKYMACC+LYRGDVVP D + AIA I+TKR        P+    G++      
Sbjct: 303  VKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGIN------ 356

Query: 1208 XLQPPDGVPGG 1240
              QPP  VPGG
Sbjct: 357  -YQPPTVVPGG 366


>ref|NP_001071626.1| tubulin alpha-4A chain [Bos taurus].
          Length = 448

 Score =  587 bits (1512), Expect = e-168
 Identities = 292/371 (78%), Positives = 314/371 (84%), Gaps = 8/371 (2%)
 Frame = +2

Query: 152  ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKLHDDDSFTTFFSETGNGKHV 331
            ECISVHVGQAGVQ+GNACWEL+CLEHGIQ DG   +  +    DDSFTTFF ETG GKHV
Sbjct: 3    ECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHV 62

Query: 332  PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI 511
            PRAV VDLEPTV+DE+R G YRQLFHPEQLITGKEDAANNYARGHYT+GKE ID VLDRI
Sbjct: 63   PRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRI 122

Query: 512  RKLTDACSGLQGFLIFHXXXXXXXXXXXXLLMERLSLDYGKKSKLEFAIYPAPQVSTAVV 691
            RKL+D C+GLQGFL+FH            LLMERLS+DYGKKSKLEF+IYPAPQVSTAVV
Sbjct: 123  RKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVV 182

Query: 692  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 871
            EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL
Sbjct: 183  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 242

Query: 872  RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM 1051
            RFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHEQLSVAEIT++CFEP +QM
Sbjct: 243  RFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQM 302

Query: 1052 VKCDPRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR--------PSSL*TGVHRXSGGH 1207
            VKCDPRHGKYMACC+LYRGDVVP D + AIAAI+TKR        P+    G++      
Sbjct: 303  VKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGIN------ 356

Query: 1208 XLQPPDGVPGG 1240
              QPP  VPGG
Sbjct: 357  -YQPPTVVPGG 366


>ref|XP_001790595.1| PREDICTED: tubulin alpha-1C chain-like [Bos taurus].
          Length = 449

 Score =  586 bits (1511), Expect = e-167
 Identities = 290/371 (78%), Positives = 313/371 (84%), Gaps = 8/371 (2%)
 Frame = +2

Query: 152  ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKLHDDDSFTTFFSETGNGKHV 331
            ECIS+HVGQAGVQIGNACWEL+CLEHGIQ DG   +  +    DDSF TFFSETG GKHV
Sbjct: 3    ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHV 62

Query: 332  PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI 511
            PRAV VDLEPTV+DEVR GTYRQLFHPEQLI+GKEDAANNYARGHYT+GKE IDLVLDR+
Sbjct: 63   PRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDRV 122

Query: 512  RKLTDACSGLQGFLIFHXXXXXXXXXXXXLLMERLSLDYGKKSKLEFAIYPAPQVSTAVV 691
            RKL D C+GLQGFL+FH            LLMERLS+DYGKKSKLEF+IYPAPQVSTAVV
Sbjct: 123  RKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVV 182

Query: 692  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 871
            EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTY NLNRL+SQIVSSITASL
Sbjct: 183  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYMNLNRLMSQIVSSITASL 242

Query: 872  RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM 1051
            RFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHEQLSVAEIT++CFEP +QM
Sbjct: 243  RFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQM 302

Query: 1052 VKCDPRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR--------PSSL*TGVHRXSGGH 1207
            VKCDPRHGKYMACC+LYRGDVVP D + AIA I+TKR        P+    G++      
Sbjct: 303  VKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGIN------ 356

Query: 1208 XLQPPDGVPGG 1240
              QPP  VPGG
Sbjct: 357  -YQPPTVVPGG 366


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 49,265,624
Number of extensions: 1540722
Number of successful extensions: 6982
Number of sequences better than 1.0e-05: 35
Number of HSP's gapped: 6885
Number of HSP's successfully gapped: 38
Length of query: 413
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 308
Effective length of database: 14,207,134
Effective search space: 4375797272
Effective search space used: 4375797272
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-014012
         (1240 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003126645.2| PREDICTED: tubulin alpha-8 chain-like [Sus s...   648   0.0  
Alignment   gi|XP_001929621.1| PREDICTED: tubulin alpha-3 chain [Sus scrofa].    593   e-170
Alignment   gi|XP_003133048.1| PREDICTED: tubulin alpha-3 chain-like [Sus s...   593   e-170
Alignment   gi|NP_001038009.1| tubulin alpha-1B chain [Sus scrofa].              592   e-169
Alignment   gi|XP_001928233.1| PREDICTED: tubulin alpha-1D chain [Sus scrof...   589   e-169
Alignment   gi|XP_003355423.1| PREDICTED: tubulin alpha-1C chain isoform 1 ...   589   e-169
Alignment   gi|XP_001928370.3| PREDICTED: tubulin alpha-4A chain [Sus scrof...   587   e-168
Alignment   gi|XP_003361673.1| PREDICTED: tubulin alpha-8 chain-like [Sus s...   563   e-162
Alignment   gi|XP_003355425.1| PREDICTED: tubulin alpha-1C chain isoform 3 ...   528   e-150
Alignment   gi|XP_003355424.1| PREDICTED: tubulin alpha-1C chain isoform 2 ...   528   e-150

>ref|XP_003126645.2| PREDICTED: tubulin alpha-8 chain-like [Sus scrofa].
          Length = 413

 Score =  648 bits (1672), Expect(2) = 0.0
 Identities = 321/337 (95%), Positives = 323/337 (95%)
 Frame = +2

Query: 152  ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKLHDDDSFTTFFSETGNGKHV 331
            ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKLHDDDSFTTFFSETGNGKHV
Sbjct: 53   ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKLHDDDSFTTFFSETGNGKHV 112

Query: 332  PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI 511
            PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI
Sbjct: 113  PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI 172

Query: 512  RKLTDACSGLQGFLIFHXXXXXXXXXXXXLLMERLSLDYGKKSKLEFAIYPAPQVSTAVV 691
            RKLTDACSGLQGFLIFH            LLMERLSLDYGKKSKLEFAIYPAPQVSTAVV
Sbjct: 173  RKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTAVV 232

Query: 692  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 871
            EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL
Sbjct: 233  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 292

Query: 872  RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM 1051
            RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM
Sbjct: 293  RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM 352

Query: 1052 VKCDPRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR 1162
            VKCDPRHGKYMACCMLYRGDVVP D +VAIAAI+TKR
Sbjct: 353  VKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKR 389



 Score = 26.9 bits (58), Expect(2) = 0.0
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +1

Query: 1156 QETIQFVDWCP 1188
            + TIQFVDWCP
Sbjct: 388  KRTIQFVDWCP 398


>ref|XP_001929621.1| PREDICTED: tubulin alpha-3 chain [Sus scrofa].
          Length = 450

 Score =  593 bits (1528), Expect = e-170
 Identities = 296/371 (79%), Positives = 313/371 (84%), Gaps = 8/371 (2%)
 Frame = +2

Query: 152  ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKLHDDDSFTTFFSETGNGKHV 331
            ECIS+HVGQAGVQIGNACWEL+CLEHGIQ DG   +  +    DDSF TFFSETG GKHV
Sbjct: 3    ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHV 62

Query: 332  PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI 511
            PRAV VDLEPTVVDEVR GTYRQLFHPEQLITGKEDAANNYARGHYT+GKE +DLVLDRI
Sbjct: 63   PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRI 122

Query: 512  RKLTDACSGLQGFLIFHXXXXXXXXXXXXLLMERLSLDYGKKSKLEFAIYPAPQVSTAVV 691
            RKL D C+GLQGFLIFH            LLMERLS+DYGKKSKLEFAIYPAPQVSTAVV
Sbjct: 123  RKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVV 182

Query: 692  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 871
            EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITASL
Sbjct: 183  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASL 242

Query: 872  RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM 1051
            RFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHEQLSVAEIT++CFEP +QM
Sbjct: 243  RFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQM 302

Query: 1052 VKCDPRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR--------PSSL*TGVHRXSGGH 1207
            VKCDPRHGKYMACCMLYRGDVVP D + AIA I+TKR        P+    G++      
Sbjct: 303  VKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGIN------ 356

Query: 1208 XLQPPDGVPGG 1240
              QPP  VPGG
Sbjct: 357  -YQPPTVVPGG 366


>ref|XP_003133048.1| PREDICTED: tubulin alpha-3 chain-like [Sus scrofa].
          Length = 450

 Score =  593 bits (1528), Expect = e-170
 Identities = 296/371 (79%), Positives = 313/371 (84%), Gaps = 8/371 (2%)
 Frame = +2

Query: 152  ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKLHDDDSFTTFFSETGNGKHV 331
            ECIS+HVGQAGVQIGNACWEL+CLEHGIQ DG   +  +    DDSF TFFSETG GKHV
Sbjct: 3    ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHV 62

Query: 332  PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI 511
            PRAV VDLEPTVVDEVR GTYRQLFHPEQLITGKEDAANNYARGHYT+GKE +DLVLDRI
Sbjct: 63   PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRI 122

Query: 512  RKLTDACSGLQGFLIFHXXXXXXXXXXXXLLMERLSLDYGKKSKLEFAIYPAPQVSTAVV 691
            RKL D C+GLQGFLIFH            LLMERLS+DYGKKSKLEFAIYPAPQVSTAVV
Sbjct: 123  RKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVV 182

Query: 692  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 871
            EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITASL
Sbjct: 183  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASL 242

Query: 872  RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM 1051
            RFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHEQLSVAEIT++CFEP +QM
Sbjct: 243  RFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQM 302

Query: 1052 VKCDPRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR--------PSSL*TGVHRXSGGH 1207
            VKCDPRHGKYMACCMLYRGDVVP D + AIA I+TKR        P+    G++      
Sbjct: 303  VKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGIN------ 356

Query: 1208 XLQPPDGVPGG 1240
              QPP  VPGG
Sbjct: 357  -YQPPTVVPGG 366


>ref|NP_001038009.1| tubulin alpha-1B chain [Sus scrofa].
          Length = 451

 Score =  592 bits (1525), Expect = e-169
 Identities = 294/371 (79%), Positives = 314/371 (84%), Gaps = 8/371 (2%)
 Frame = +2

Query: 152  ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKLHDDDSFTTFFSETGNGKHV 331
            ECIS+HVGQAGVQIGNACWEL+CLEHGIQ DG   +  +    DDSF TFFSETG GKHV
Sbjct: 3    ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHV 62

Query: 332  PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI 511
            PRAV VDLEPTV+DEVR GTYRQLFHPEQLITGKEDAANNYARGHYT+GKE IDLVLDRI
Sbjct: 63   PRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRI 122

Query: 512  RKLTDACSGLQGFLIFHXXXXXXXXXXXXLLMERLSLDYGKKSKLEFAIYPAPQVSTAVV 691
            RKL D C+GLQGFL+FH            LLMERLS+DYGKKSKLEF+IYPAPQVSTAVV
Sbjct: 123  RKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVV 182

Query: 692  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 871
            EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL
Sbjct: 183  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 242

Query: 872  RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM 1051
            RFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHEQLSVAEIT++CFEP +QM
Sbjct: 243  RFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQM 302

Query: 1052 VKCDPRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR--------PSSL*TGVHRXSGGH 1207
            VKCDPRHGKYMACC+LYRGDVVP D + AIA I+TKR        P+    G++      
Sbjct: 303  VKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGIN------ 356

Query: 1208 XLQPPDGVPGG 1240
              QPP  VPGG
Sbjct: 357  -YQPPTVVPGG 366


>ref|XP_001928233.1| PREDICTED: tubulin alpha-1D chain [Sus scrofa].
          Length = 452

 Score =  589 bits (1519), Expect = e-169
 Identities = 295/371 (79%), Positives = 313/371 (84%), Gaps = 8/371 (2%)
 Frame = +2

Query: 152  ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKLHDDDSFTTFFSETGNGKHV 331
            ECISVHVGQAGVQIGNACWEL+CLEHGIQ DG   +  +    DDSF TFFSETG GKHV
Sbjct: 3    ECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHV 62

Query: 332  PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI 511
            PRAV VDLEPTV+DEVR GTYRQLFHPEQLITGKEDAANNYARGHYT+GKE IDLVLDRI
Sbjct: 63   PRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLDRI 122

Query: 512  RKLTDACSGLQGFLIFHXXXXXXXXXXXXLLMERLSLDYGKKSKLEFAIYPAPQVSTAVV 691
            RKL D C+GLQGFLIFH            LLMERLS+DYGKKSKLEF+IYPAPQVSTAVV
Sbjct: 123  RKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVV 182

Query: 692  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 871
            EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITASL
Sbjct: 183  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASL 242

Query: 872  RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM 1051
            RFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHEQLSVAEIT++CFEP +QM
Sbjct: 243  RFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQM 302

Query: 1052 VKCDPRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR--------PSSL*TGVHRXSGGH 1207
            VKCDPRHGKYMACC+LYRGDVVP D + AIAAI+TKR        P+    G++      
Sbjct: 303  VKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGIN------ 356

Query: 1208 XLQPPDGVPGG 1240
              QPP  VP G
Sbjct: 357  -YQPPTVVPRG 366


>ref|XP_003355423.1| PREDICTED: tubulin alpha-1C chain isoform 1 [Sus scrofa].
          Length = 449

 Score =  589 bits (1519), Expect = e-169
 Identities = 292/371 (78%), Positives = 314/371 (84%), Gaps = 8/371 (2%)
 Frame = +2

Query: 152  ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKLHDDDSFTTFFSETGNGKHV 331
            ECIS+HVGQAGVQIGNACWEL+CLEHGIQ DG   +  +    DDSF TFFSETG GKHV
Sbjct: 3    ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHV 62

Query: 332  PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI 511
            PRAV VDLEPTV+DEVR GTYRQLFHPEQLITGKEDAANNYARGHYT+GKE IDLVLDRI
Sbjct: 63   PRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRI 122

Query: 512  RKLTDACSGLQGFLIFHXXXXXXXXXXXXLLMERLSLDYGKKSKLEFAIYPAPQVSTAVV 691
            RKL D C+GLQGFL+FH            LLMERLS+DYGKKSKLEF+IYPAPQVSTAVV
Sbjct: 123  RKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVV 182

Query: 692  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 871
            EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRL+SQIVSSITASL
Sbjct: 183  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLMSQIVSSITASL 242

Query: 872  RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM 1051
            RFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHEQL+VAEIT++CFEP +QM
Sbjct: 243  RFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQM 302

Query: 1052 VKCDPRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR--------PSSL*TGVHRXSGGH 1207
            VKCDPRHGKYMACC+LYRGDVVP D + AIA I+TKR        P+    G++      
Sbjct: 303  VKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGIN------ 356

Query: 1208 XLQPPDGVPGG 1240
              QPP  VPGG
Sbjct: 357  -YQPPTVVPGG 366


>ref|XP_001928370.3| PREDICTED: tubulin alpha-4A chain [Sus scrofa].
          Length = 448

 Score =  587 bits (1512), Expect = e-168
 Identities = 292/371 (78%), Positives = 314/371 (84%), Gaps = 8/371 (2%)
 Frame = +2

Query: 152  ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKLHDDDSFTTFFSETGNGKHV 331
            ECISVHVGQAGVQ+GNACWEL+CLEHGIQ DG   +  +    DDSFTTFF ETG GKHV
Sbjct: 3    ECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHV 62

Query: 332  PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI 511
            PRAV VDLEPTV+DE+R G YRQLFHPEQLITGKEDAANNYARGHYT+GKE ID VLDRI
Sbjct: 63   PRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRI 122

Query: 512  RKLTDACSGLQGFLIFHXXXXXXXXXXXXLLMERLSLDYGKKSKLEFAIYPAPQVSTAVV 691
            RKL+D C+GLQGFL+FH            LLMERLS+DYGKKSKLEF+IYPAPQVSTAVV
Sbjct: 123  RKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVV 182

Query: 692  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 871
            EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL
Sbjct: 183  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 242

Query: 872  RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM 1051
            RFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHEQLSVAEIT++CFEP +QM
Sbjct: 243  RFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQM 302

Query: 1052 VKCDPRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR--------PSSL*TGVHRXSGGH 1207
            VKCDPRHGKYMACC+LYRGDVVP D + AIAAI+TKR        P+    G++      
Sbjct: 303  VKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGIN------ 356

Query: 1208 XLQPPDGVPGG 1240
              QPP  VPGG
Sbjct: 357  -YQPPTVVPGG 366


>ref|XP_003361673.1| PREDICTED: tubulin alpha-8 chain-like [Sus scrofa].
          Length = 666

 Score =  563 bits (1452), Expect(3) = e-162
 Identities = 282/300 (94%), Positives = 285/300 (95%)
 Frame = +2

Query: 263  ASKLHDDDSFTTFFSETGNGKHVPRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDA 442
            ASKLHDDDSFTTFFSETGNGKHVPRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDA
Sbjct: 264  ASKLHDDDSFTTFFSETGNGKHVPRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDA 323

Query: 443  ANNYARGHYTVGKESIDLVLDRIRKLTDACSGLQGFLIFHXXXXXXXXXXXXLLMERLSL 622
            ANNYARGHYTVGKESIDLVLDRIRKLTDACSGLQGFLIFH            LLMERLSL
Sbjct: 324  ANNYARGHYTVGKESIDLVLDRIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSL 383

Query: 623  DYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDI 802
            DYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHS+ AFMVDNEAIYDICRRNLDI
Sbjct: 384  DYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSESAFMVDNEAIYDICRRNLDI 443

Query: 803  ERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAE 982
            ERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAE
Sbjct: 444  ERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAE 503

Query: 983  KAYHEQLSVAEITSSCFEPNSQMVKCDPRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR 1162
            KAYHEQLSVAEITSSCFEPNSQMVKCDPRHGKYMACCMLYRGDVVP D +VAIAAI+TKR
Sbjct: 504  KAYHEQLSVAEITSSCFEPNSQMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKR 563



 Score = 26.9 bits (58), Expect(3) = e-162
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +1

Query: 1156 QETIQFVDWCP 1188
            + TIQFVDWCP
Sbjct: 562  KRTIQFVDWCP 572



 Score = 24.3 bits (51), Expect(3) = e-162
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 1188 TGXQVGXHYSPPTV 1229
            TG +VG +Y PPTV
Sbjct: 573  TGFKVGINYQPPTV 586


>ref|XP_003355425.1| PREDICTED: tubulin alpha-1C chain isoform 3 [Sus scrofa].
          Length = 414

 Score =  528 bits (1360), Expect = e-150
 Identities = 263/328 (80%), Positives = 281/328 (85%), Gaps = 8/328 (2%)
 Frame = +2

Query: 281  DDSFTTFFSETGNGKHVPRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYAR 460
            DDSF TFFSETG GKHVPRAV VDLEPTV+DEVR GTYRQLFHPEQLITGKEDAANNYAR
Sbjct: 11   DDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYAR 70

Query: 461  GHYTVGKESIDLVLDRIRKLTDACSGLQGFLIFHXXXXXXXXXXXXLLMERLSLDYGKKS 640
            GHYT+GKE IDLVLDRIRKL D C+GLQGFL+FH            LLMERLS+DYGKKS
Sbjct: 71   GHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKS 130

Query: 641  KLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYT 820
            KLEF+IYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYT
Sbjct: 131  KLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYT 190

Query: 821  NLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQ 1000
            NLNRL+SQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHEQ
Sbjct: 191  NLNRLMSQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQ 250

Query: 1001 LSVAEITSSCFEPNSQMVKCDPRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR------ 1162
            L+VAEIT++CFEP +QMVKCDPRHGKYMACC+LYRGDVVP D + AIA I+TKR      
Sbjct: 251  LTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVD 310

Query: 1163 --PSSL*TGVHRXSGGHXLQPPDGVPGG 1240
              P+    G++        QPP  VPGG
Sbjct: 311  WCPTGFKVGIN-------YQPPTVVPGG 331


>ref|XP_003355424.1| PREDICTED: tubulin alpha-1C chain isoform 2 [Sus scrofa].
          Length = 414

 Score =  528 bits (1360), Expect = e-150
 Identities = 263/328 (80%), Positives = 281/328 (85%), Gaps = 8/328 (2%)
 Frame = +2

Query: 281  DDSFTTFFSETGNGKHVPRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYAR 460
            DDSF TFFSETG GKHVPRAV VDLEPTV+DEVR GTYRQLFHPEQLITGKEDAANNYAR
Sbjct: 11   DDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYAR 70

Query: 461  GHYTVGKESIDLVLDRIRKLTDACSGLQGFLIFHXXXXXXXXXXXXLLMERLSLDYGKKS 640
            GHYT+GKE IDLVLDRIRKL D C+GLQGFL+FH            LLMERLS+DYGKKS
Sbjct: 71   GHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKS 130

Query: 641  KLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYT 820
            KLEF+IYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYT
Sbjct: 131  KLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYT 190

Query: 821  NLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQ 1000
            NLNRL+SQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHEQ
Sbjct: 191  NLNRLMSQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQ 250

Query: 1001 LSVAEITSSCFEPNSQMVKCDPRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR------ 1162
            L+VAEIT++CFEP +QMVKCDPRHGKYMACC+LYRGDVVP D + AIA I+TKR      
Sbjct: 251  LTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVD 310

Query: 1163 --PSSL*TGVHRXSGGHXLQPPDGVPGG 1240
              P+    G++        QPP  VPGG
Sbjct: 311  WCPTGFKVGIN-------YQPPTVVPGG 331


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,852,332
Number of extensions: 996597
Number of successful extensions: 4399
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 4343
Number of HSP's successfully gapped: 31
Length of query: 413
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 312
Effective length of database: 8,829,335
Effective search space: 2754752520
Effective search space used: 2754752520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-014012
         (1240 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_059075.1| tubulin alpha-8 chain [Mus musculus].                649   0.0  
Alignment   gi|NP_033475.1| tubulin alpha-3 chain [Mus musculus].                593   e-169
Alignment   gi|NP_033472.1| tubulin alpha-3 chain [Mus musculus].                593   e-169
Alignment   gi|NP_035784.1| tubulin alpha-1B chain [Mus musculus].               592   e-169
Alignment   gi|NP_033474.1| tubulin alpha-1C chain [Mus musculus].               590   e-169
Alignment   gi|NP_035783.1| tubulin alpha-1A chain [Mus musculus].               590   e-169
Alignment   gi|NP_033473.1| tubulin alpha-4A chain [Mus musculus].               587   e-168
Alignment   gi|XP_486246.1| PREDICTED: tubulin alpha-1B chain isoform 1 [Mu...   579   e-165
Alignment   gi|XP_909750.1| PREDICTED: tubulin alpha-1B chain isoform 4 [Mu...   579   e-165
Alignment   gi|NP_001029051.2| tubulin alpha chain-like 3 [Mus musculus].        476   e-134

>ref|NP_059075.1| tubulin alpha-8 chain [Mus musculus].
          Length = 449

 Score =  649 bits (1673), Expect = 0.0
 Identities = 327/371 (88%), Positives = 334/371 (90%), Gaps = 8/371 (2%)
 Frame = +2

Query: 152  ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKLHDDDSFTTFFSETGNGKHV 331
            ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFG QASK++DDDSFTTFFSETGNGKHV
Sbjct: 3    ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGTQASKINDDDSFTTFFSETGNGKHV 62

Query: 332  PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI 511
            PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI
Sbjct: 63   PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI 122

Query: 512  RKLTDACSGLQGFLIFHXXXXXXXXXXXXLLMERLSLDYGKKSKLEFAIYPAPQVSTAVV 691
            RKLTDACSGLQGFLIFH            LLMERLSLDYGKKSKLEFAIYPAPQVSTAVV
Sbjct: 123  RKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTAVV 182

Query: 692  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 871
            EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL
Sbjct: 183  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 242

Query: 872  RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM 1051
            RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM
Sbjct: 243  RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM 302

Query: 1052 VKCDPRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR--------PSSL*TGVHRXSGGH 1207
            VKCDPRHGKYMACCMLYRGDVVP D +VAIAAI+TKR        P+    G++      
Sbjct: 303  VKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGIN------ 356

Query: 1208 XLQPPDGVPGG 1240
              QPP  VPGG
Sbjct: 357  -YQPPTVVPGG 366


>ref|NP_033475.1| tubulin alpha-3 chain [Mus musculus].
          Length = 450

 Score =  593 bits (1528), Expect = e-169
 Identities = 296/371 (79%), Positives = 313/371 (84%), Gaps = 8/371 (2%)
 Frame = +2

Query: 152  ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKLHDDDSFTTFFSETGNGKHV 331
            ECIS+HVGQAGVQIGNACWEL+CLEHGIQ DG   +  +    DDSF TFFSETG GKHV
Sbjct: 3    ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHV 62

Query: 332  PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI 511
            PRAV VDLEPTVVDEVR GTYRQLFHPEQLITGKEDAANNYARGHYT+GKE +DLVLDRI
Sbjct: 63   PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRI 122

Query: 512  RKLTDACSGLQGFLIFHXXXXXXXXXXXXLLMERLSLDYGKKSKLEFAIYPAPQVSTAVV 691
            RKL D C+GLQGFLIFH            LLMERLS+DYGKKSKLEFAIYPAPQVSTAVV
Sbjct: 123  RKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVV 182

Query: 692  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 871
            EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITASL
Sbjct: 183  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASL 242

Query: 872  RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM 1051
            RFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHEQLSVAEIT++CFEP +QM
Sbjct: 243  RFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQM 302

Query: 1052 VKCDPRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR--------PSSL*TGVHRXSGGH 1207
            VKCDPRHGKYMACCMLYRGDVVP D + AIA I+TKR        P+    G++      
Sbjct: 303  VKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGIN------ 356

Query: 1208 XLQPPDGVPGG 1240
              QPP  VPGG
Sbjct: 357  -YQPPTVVPGG 366


>ref|NP_033472.1| tubulin alpha-3 chain [Mus musculus].
          Length = 450

 Score =  593 bits (1528), Expect = e-169
 Identities = 296/371 (79%), Positives = 313/371 (84%), Gaps = 8/371 (2%)
 Frame = +2

Query: 152  ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKLHDDDSFTTFFSETGNGKHV 331
            ECIS+HVGQAGVQIGNACWEL+CLEHGIQ DG   +  +    DDSF TFFSETG GKHV
Sbjct: 3    ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHV 62

Query: 332  PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI 511
            PRAV VDLEPTVVDEVR GTYRQLFHPEQLITGKEDAANNYARGHYT+GKE +DLVLDRI
Sbjct: 63   PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRI 122

Query: 512  RKLTDACSGLQGFLIFHXXXXXXXXXXXXLLMERLSLDYGKKSKLEFAIYPAPQVSTAVV 691
            RKL D C+GLQGFLIFH            LLMERLS+DYGKKSKLEFAIYPAPQVSTAVV
Sbjct: 123  RKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVV 182

Query: 692  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 871
            EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITASL
Sbjct: 183  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASL 242

Query: 872  RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM 1051
            RFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHEQLSVAEIT++CFEP +QM
Sbjct: 243  RFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQM 302

Query: 1052 VKCDPRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR--------PSSL*TGVHRXSGGH 1207
            VKCDPRHGKYMACCMLYRGDVVP D + AIA I+TKR        P+    G++      
Sbjct: 303  VKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGIN------ 356

Query: 1208 XLQPPDGVPGG 1240
              QPP  VPGG
Sbjct: 357  -YQPPTVVPGG 366


>ref|NP_035784.1| tubulin alpha-1B chain [Mus musculus].
          Length = 451

 Score =  592 bits (1525), Expect = e-169
 Identities = 294/371 (79%), Positives = 314/371 (84%), Gaps = 8/371 (2%)
 Frame = +2

Query: 152  ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKLHDDDSFTTFFSETGNGKHV 331
            ECIS+HVGQAGVQIGNACWEL+CLEHGIQ DG   +  +    DDSF TFFSETG GKHV
Sbjct: 3    ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHV 62

Query: 332  PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI 511
            PRAV VDLEPTV+DEVR GTYRQLFHPEQLITGKEDAANNYARGHYT+GKE IDLVLDRI
Sbjct: 63   PRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRI 122

Query: 512  RKLTDACSGLQGFLIFHXXXXXXXXXXXXLLMERLSLDYGKKSKLEFAIYPAPQVSTAVV 691
            RKL D C+GLQGFL+FH            LLMERLS+DYGKKSKLEF+IYPAPQVSTAVV
Sbjct: 123  RKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVV 182

Query: 692  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 871
            EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL
Sbjct: 183  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 242

Query: 872  RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM 1051
            RFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHEQLSVAEIT++CFEP +QM
Sbjct: 243  RFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQM 302

Query: 1052 VKCDPRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR--------PSSL*TGVHRXSGGH 1207
            VKCDPRHGKYMACC+LYRGDVVP D + AIA I+TKR        P+    G++      
Sbjct: 303  VKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGIN------ 356

Query: 1208 XLQPPDGVPGG 1240
              QPP  VPGG
Sbjct: 357  -YQPPTVVPGG 366


>ref|NP_033474.1| tubulin alpha-1C chain [Mus musculus].
          Length = 449

 Score =  590 bits (1522), Expect = e-169
 Identities = 293/371 (78%), Positives = 314/371 (84%), Gaps = 8/371 (2%)
 Frame = +2

Query: 152  ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKLHDDDSFTTFFSETGNGKHV 331
            ECIS+HVGQAGVQIGNACWEL+CLEHGIQ DG   +  +    DDSF TFFSETG GKHV
Sbjct: 3    ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHV 62

Query: 332  PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI 511
            PRAV VDLEPTV+DEVR GTYRQLFHPEQLITGKEDAANNYARGHYT+GKE IDLVLDRI
Sbjct: 63   PRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRI 122

Query: 512  RKLTDACSGLQGFLIFHXXXXXXXXXXXXLLMERLSLDYGKKSKLEFAIYPAPQVSTAVV 691
            RKL D C+GLQGFL+FH            LLMERLS+DYGKKSKLEF+IYPAPQVSTAVV
Sbjct: 123  RKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVV 182

Query: 692  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 871
            EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL
Sbjct: 183  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 242

Query: 872  RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM 1051
            RFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHEQL+VAEIT++CFEP +QM
Sbjct: 243  RFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQM 302

Query: 1052 VKCDPRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR--------PSSL*TGVHRXSGGH 1207
            VKCDPRHGKYMACC+LYRGDVVP D + AIA I+TKR        P+    G++      
Sbjct: 303  VKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGIN------ 356

Query: 1208 XLQPPDGVPGG 1240
              QPP  VPGG
Sbjct: 357  -YQPPTVVPGG 366


>ref|NP_035783.1| tubulin alpha-1A chain [Mus musculus].
          Length = 451

 Score =  590 bits (1521), Expect = e-169
 Identities = 293/371 (78%), Positives = 313/371 (84%), Gaps = 8/371 (2%)
 Frame = +2

Query: 152  ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKLHDDDSFTTFFSETGNGKHV 331
            ECIS+HVGQAGVQIGNACWEL+CLEHGIQ DG   +  +    DDSF TFFSETG GKHV
Sbjct: 3    ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHV 62

Query: 332  PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI 511
            PRAV VDLEPTV+DEVR GTYRQLFHPEQLITGKEDAANNYARGHYT+GKE IDLVLDRI
Sbjct: 63   PRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRI 122

Query: 512  RKLTDACSGLQGFLIFHXXXXXXXXXXXXLLMERLSLDYGKKSKLEFAIYPAPQVSTAVV 691
            RKL D C+GLQGFL+FH            LLMERLS+DYGKKSKLEF+IYPAPQVSTAVV
Sbjct: 123  RKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVV 182

Query: 692  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 871
            EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITASL
Sbjct: 183  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASL 242

Query: 872  RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM 1051
            RFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHEQLSVAEIT++CFEP +QM
Sbjct: 243  RFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQM 302

Query: 1052 VKCDPRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR--------PSSL*TGVHRXSGGH 1207
            VKCDPRHGKYMACC+LYRGDVVP D + AIA I+TKR        P+    G++      
Sbjct: 303  VKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGIN------ 356

Query: 1208 XLQPPDGVPGG 1240
              QPP  VPGG
Sbjct: 357  -YQPPTVVPGG 366


>ref|NP_033473.1| tubulin alpha-4A chain [Mus musculus].
          Length = 448

 Score =  587 bits (1512), Expect = e-168
 Identities = 292/371 (78%), Positives = 314/371 (84%), Gaps = 8/371 (2%)
 Frame = +2

Query: 152  ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKLHDDDSFTTFFSETGNGKHV 331
            ECISVHVGQAGVQ+GNACWEL+CLEHGIQ DG   +  +    DDSFTTFF ETG GKHV
Sbjct: 3    ECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHV 62

Query: 332  PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI 511
            PRAV VDLEPTV+DE+R G YRQLFHPEQLITGKEDAANNYARGHYT+GKE ID VLDRI
Sbjct: 63   PRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRI 122

Query: 512  RKLTDACSGLQGFLIFHXXXXXXXXXXXXLLMERLSLDYGKKSKLEFAIYPAPQVSTAVV 691
            RKL+D C+GLQGFL+FH            LLMERLS+DYGKKSKLEF+IYPAPQVSTAVV
Sbjct: 123  RKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVV 182

Query: 692  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 871
            EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL
Sbjct: 183  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 242

Query: 872  RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM 1051
            RFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHEQLSVAEIT++CFEP +QM
Sbjct: 243  RFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQM 302

Query: 1052 VKCDPRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR--------PSSL*TGVHRXSGGH 1207
            VKCDPRHGKYMACC+LYRGDVVP D + AIAAI+TKR        P+    G++      
Sbjct: 303  VKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGIN------ 356

Query: 1208 XLQPPDGVPGG 1240
              QPP  VPGG
Sbjct: 357  -YQPPTVVPGG 366


>ref|XP_486246.1| PREDICTED: tubulin alpha-1B chain isoform 1 [Mus musculus].
          Length = 450

 Score =  579 bits (1492), Expect = e-165
 Identities = 290/371 (78%), Positives = 310/371 (83%), Gaps = 8/371 (2%)
 Frame = +2

Query: 152  ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKLHDDDSFTTFFSETGNGKHV 331
            ECIS+HVGQAGVQIGNACWEL+CLEHGIQADG   +  +    DDSF TF SETG GKHV
Sbjct: 3    ECISIHVGQAGVQIGNACWELYCLEHGIQADGQMPSGKTIRGGDDSFNTF-SETGAGKHV 61

Query: 332  PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI 511
            PRAV VDLEPTV+DEVR GTYRQLFHPEQLITGKEDAANNYARGHYT+GKE IDLVLD I
Sbjct: 62   PRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDTI 121

Query: 512  RKLTDACSGLQGFLIFHXXXXXXXXXXXXLLMERLSLDYGKKSKLEFAIYPAPQVSTAVV 691
            RKL D C GLQGFL+FH            LLMERLS+DYGKKSKLEF+IYPAPQVSTAVV
Sbjct: 122  RKLADQCIGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVV 181

Query: 692  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 871
            EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIE PTYTNLNRLISQIVSSITASL
Sbjct: 182  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIEHPTYTNLNRLISQIVSSITASL 241

Query: 872  RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM 1051
            RFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHE LSVAEIT++CFEP +QM
Sbjct: 242  RFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEHLSVAEITNACFEPANQM 301

Query: 1052 VKCDPRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR--------PSSL*TGVHRXSGGH 1207
            VKCDPRHGKYMACC+LYRGDV+P D + AIA I+TKR        P+    G++      
Sbjct: 302  VKCDPRHGKYMACCLLYRGDVIPKDVNAAIATIKTKRSIQFVDWCPTGFKVGIN------ 355

Query: 1208 XLQPPDGVPGG 1240
              QPP  VPGG
Sbjct: 356  -YQPPTVVPGG 365


>ref|XP_909750.1| PREDICTED: tubulin alpha-1B chain isoform 4 [Mus musculus].
          Length = 450

 Score =  579 bits (1492), Expect = e-165
 Identities = 290/371 (78%), Positives = 310/371 (83%), Gaps = 8/371 (2%)
 Frame = +2

Query: 152  ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKLHDDDSFTTFFSETGNGKHV 331
            ECIS+HVGQAGVQIGNACWEL+CLEHGIQADG   +  +    DDSF TF SETG GKHV
Sbjct: 3    ECISIHVGQAGVQIGNACWELYCLEHGIQADGQMPSGKTIRGGDDSFNTF-SETGAGKHV 61

Query: 332  PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI 511
            PRAV VDLEPTV+DEVR GTYRQLFHPEQLITGKEDAANNYARGHYT+GKE IDLVLD I
Sbjct: 62   PRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDTI 121

Query: 512  RKLTDACSGLQGFLIFHXXXXXXXXXXXXLLMERLSLDYGKKSKLEFAIYPAPQVSTAVV 691
            RKL D C GLQGFL+FH            LLMERLS+DYGKKSKLEF+IYPAPQVSTAVV
Sbjct: 122  RKLADQCIGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVV 181

Query: 692  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 871
            EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIE PTYTNLNRLISQIVSSITASL
Sbjct: 182  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIEHPTYTNLNRLISQIVSSITASL 241

Query: 872  RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM 1051
            RFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHE LSVAEIT++CFEP +QM
Sbjct: 242  RFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEHLSVAEITNACFEPANQM 301

Query: 1052 VKCDPRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR--------PSSL*TGVHRXSGGH 1207
            VKCDPRHGKYMACC+LYRGDV+P D + AIA I+TKR        P+    G++      
Sbjct: 302  VKCDPRHGKYMACCLLYRGDVIPKDVNAAIATIKTKRSIQFVDWCPTGFKVGIN------ 355

Query: 1208 XLQPPDGVPGG 1240
              QPP  VPGG
Sbjct: 356  -YQPPTVVPGG 365


>ref|NP_001029051.2| tubulin alpha chain-like 3 [Mus musculus].
          Length = 446

 Score =  476 bits (1225), Expect = e-134
 Identities = 236/378 (62%), Positives = 288/378 (76%), Gaps = 15/378 (3%)
 Frame = +2

Query: 152  ECISVHVGQAGVQIGNACWELFCLEHGIQADG-TFGAQASKL------HDDDSFTTFFSE 310
            EC+S+H+GQAGVQIG+ACWEL+CLEHGIQ DG     Q   L      H + S  TFF E
Sbjct: 3    ECLSIHIGQAGVQIGDACWELYCLEHGIQPDGFILDHQHDNLENPKVEHMNASLDTFFHE 62

Query: 311  TGNGKHVPRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESI 490
            T  GKHVPR + +DLEPTV+D +R G Y  LFHPEQL+ GKEDAAN YARG Y+VG E I
Sbjct: 63   TRAGKHVPRTLFMDLEPTVIDGIRVGRYHSLFHPEQLVNGKEDAANTYARGRYSVGSEVI 122

Query: 491  DLVLDRIRKLTDACSGLQGFLIFHXXXXXXXXXXXXLLMERLSLDYGKKSKLEFAIYPAP 670
            +LVL+RIRKL + CSGLQGFLI+             LLMERLS++Y KK KLEF++YP+P
Sbjct: 123  ELVLERIRKLAEQCSGLQGFLIYRSFGGGTGSGFTSLLMERLSVEYCKKIKLEFSVYPSP 182

Query: 671  QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIV 850
            ++STAVVEPYN+ILTTH+T+E+SDCAFMVDNEA+YDIC+  L IERP+Y ++NRLI+Q+ 
Sbjct: 183  RISTAVVEPYNAILTTHSTIEYSDCAFMVDNEALYDICQHKLGIERPSYASINRLIAQVS 242

Query: 851  SSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSC 1030
            SSITASLRF+G LNVDL EFQTNLVPYPRIHFP+   APIISAEKAY EQLSV+++T+SC
Sbjct: 243  SSITASLRFEGPLNVDLIEFQTNLVPYPRIHFPITALAPIISAEKAYQEQLSVSDVTASC 302

Query: 1031 FEPNSQMVKCDPRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR--------PSSL*TGV 1186
            FE ++Q+VKCDPR GKYMACC+LYRGDVVP D + AIAA++++         P+    G+
Sbjct: 303  FEVSNQLVKCDPRLGKYMACCLLYRGDVVPKDVNEAIAAMKSRTSVQFVDWCPTGFKVGI 362

Query: 1187 HRXSGGHXLQPPDGVPGG 1240
            +        QPP  VPGG
Sbjct: 363  N-------YQPPAVVPGG 373


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 42,166,723
Number of extensions: 1262410
Number of successful extensions: 5277
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 5191
Number of HSP's successfully gapped: 28
Length of query: 413
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 309
Effective length of database: 12,493,815
Effective search space: 3860588835
Effective search space used: 3860588835
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-014012
         (1240 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_061816.1| tubulin alpha-8 chain isoform 1 [Homo sapiens].      647   0.0  
Alignment   gi|NP_525125.2| tubulin alpha-3C/D chain [Homo sapiens].             593   e-169
Alignment   gi|NP_005992.1| tubulin alpha-3C/D chain [Homo sapiens].             593   e-169
Alignment   gi|NP_006073.2| tubulin alpha-1B chain [Homo sapiens].               592   e-169
Alignment   gi|NP_116093.1| tubulin alpha-1C chain [Homo sapiens].               590   e-169
Alignment   gi|NP_006000.2| tubulin alpha-1A chain [Homo sapiens].               590   e-169
Alignment   gi|NP_997195.1| tubulin alpha-3E chain [Homo sapiens].               588   e-168
Alignment   gi|NP_005991.1| tubulin alpha-4A chain [Homo sapiens].               587   e-167
Alignment   gi|NP_001180343.1| tubulin alpha-8 chain isoform 2 [Homo sapien...   518   e-147
Alignment   gi|NP_079079.1| tubulin alpha chain-like 3 isoform 1 [Homo sapi...   477   e-134

>ref|NP_061816.1| tubulin alpha-8 chain isoform 1 [Homo sapiens].
          Length = 449

 Score =  647 bits (1669), Expect = 0.0
 Identities = 326/371 (87%), Positives = 334/371 (90%), Gaps = 8/371 (2%)
 Frame = +2

Query: 152  ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKLHDDDSFTTFFSETGNGKHV 331
            ECISVHVGQAGVQIGNACWELFCLEHGIQADGTF AQASK++DDDSFTTFFSETGNGKHV
Sbjct: 3    ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFDAQASKINDDDSFTTFFSETGNGKHV 62

Query: 332  PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI 511
            PRAVM+DLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI
Sbjct: 63   PRAVMIDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI 122

Query: 512  RKLTDACSGLQGFLIFHXXXXXXXXXXXXLLMERLSLDYGKKSKLEFAIYPAPQVSTAVV 691
            RKLTDACSGLQGFLIFH            LLMERLSLDYGKKSKLEFAIYPAPQVSTAVV
Sbjct: 123  RKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTAVV 182

Query: 692  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 871
            EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL
Sbjct: 183  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 242

Query: 872  RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM 1051
            RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM
Sbjct: 243  RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM 302

Query: 1052 VKCDPRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR--------PSSL*TGVHRXSGGH 1207
            VKCDPRHGKYMACCMLYRGDVVP D +VAIAAI+TKR        P+    G++      
Sbjct: 303  VKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGIN------ 356

Query: 1208 XLQPPDGVPGG 1240
              QPP  VPGG
Sbjct: 357  -YQPPTVVPGG 366


>ref|NP_525125.2| tubulin alpha-3C/D chain [Homo sapiens].
          Length = 450

 Score =  593 bits (1528), Expect = e-169
 Identities = 296/371 (79%), Positives = 313/371 (84%), Gaps = 8/371 (2%)
 Frame = +2

Query: 152  ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKLHDDDSFTTFFSETGNGKHV 331
            ECIS+HVGQAGVQIGNACWEL+CLEHGIQ DG   +  +    DDSF TFFSETG GKHV
Sbjct: 3    ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHV 62

Query: 332  PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI 511
            PRAV VDLEPTVVDEVR GTYRQLFHPEQLITGKEDAANNYARGHYT+GKE +DLVLDRI
Sbjct: 63   PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRI 122

Query: 512  RKLTDACSGLQGFLIFHXXXXXXXXXXXXLLMERLSLDYGKKSKLEFAIYPAPQVSTAVV 691
            RKL D C+GLQGFLIFH            LLMERLS+DYGKKSKLEFAIYPAPQVSTAVV
Sbjct: 123  RKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVV 182

Query: 692  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 871
            EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITASL
Sbjct: 183  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASL 242

Query: 872  RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM 1051
            RFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHEQLSVAEIT++CFEP +QM
Sbjct: 243  RFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQM 302

Query: 1052 VKCDPRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR--------PSSL*TGVHRXSGGH 1207
            VKCDPRHGKYMACCMLYRGDVVP D + AIA I+TKR        P+    G++      
Sbjct: 303  VKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGIN------ 356

Query: 1208 XLQPPDGVPGG 1240
              QPP  VPGG
Sbjct: 357  -YQPPTVVPGG 366


>ref|NP_005992.1| tubulin alpha-3C/D chain [Homo sapiens].
          Length = 450

 Score =  593 bits (1528), Expect = e-169
 Identities = 296/371 (79%), Positives = 313/371 (84%), Gaps = 8/371 (2%)
 Frame = +2

Query: 152  ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKLHDDDSFTTFFSETGNGKHV 331
            ECIS+HVGQAGVQIGNACWEL+CLEHGIQ DG   +  +    DDSF TFFSETG GKHV
Sbjct: 3    ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHV 62

Query: 332  PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI 511
            PRAV VDLEPTVVDEVR GTYRQLFHPEQLITGKEDAANNYARGHYT+GKE +DLVLDRI
Sbjct: 63   PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRI 122

Query: 512  RKLTDACSGLQGFLIFHXXXXXXXXXXXXLLMERLSLDYGKKSKLEFAIYPAPQVSTAVV 691
            RKL D C+GLQGFLIFH            LLMERLS+DYGKKSKLEFAIYPAPQVSTAVV
Sbjct: 123  RKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVV 182

Query: 692  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 871
            EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITASL
Sbjct: 183  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASL 242

Query: 872  RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM 1051
            RFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHEQLSVAEIT++CFEP +QM
Sbjct: 243  RFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQM 302

Query: 1052 VKCDPRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR--------PSSL*TGVHRXSGGH 1207
            VKCDPRHGKYMACCMLYRGDVVP D + AIA I+TKR        P+    G++      
Sbjct: 303  VKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGIN------ 356

Query: 1208 XLQPPDGVPGG 1240
              QPP  VPGG
Sbjct: 357  -YQPPTVVPGG 366


>ref|NP_006073.2| tubulin alpha-1B chain [Homo sapiens].
          Length = 451

 Score =  592 bits (1525), Expect = e-169
 Identities = 294/371 (79%), Positives = 314/371 (84%), Gaps = 8/371 (2%)
 Frame = +2

Query: 152  ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKLHDDDSFTTFFSETGNGKHV 331
            ECIS+HVGQAGVQIGNACWEL+CLEHGIQ DG   +  +    DDSF TFFSETG GKHV
Sbjct: 3    ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHV 62

Query: 332  PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI 511
            PRAV VDLEPTV+DEVR GTYRQLFHPEQLITGKEDAANNYARGHYT+GKE IDLVLDRI
Sbjct: 63   PRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRI 122

Query: 512  RKLTDACSGLQGFLIFHXXXXXXXXXXXXLLMERLSLDYGKKSKLEFAIYPAPQVSTAVV 691
            RKL D C+GLQGFL+FH            LLMERLS+DYGKKSKLEF+IYPAPQVSTAVV
Sbjct: 123  RKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVV 182

Query: 692  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 871
            EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL
Sbjct: 183  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 242

Query: 872  RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM 1051
            RFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHEQLSVAEIT++CFEP +QM
Sbjct: 243  RFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQM 302

Query: 1052 VKCDPRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR--------PSSL*TGVHRXSGGH 1207
            VKCDPRHGKYMACC+LYRGDVVP D + AIA I+TKR        P+    G++      
Sbjct: 303  VKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGIN------ 356

Query: 1208 XLQPPDGVPGG 1240
              QPP  VPGG
Sbjct: 357  -YQPPTVVPGG 366


>ref|NP_116093.1| tubulin alpha-1C chain [Homo sapiens].
          Length = 449

 Score =  590 bits (1522), Expect = e-169
 Identities = 293/371 (78%), Positives = 314/371 (84%), Gaps = 8/371 (2%)
 Frame = +2

Query: 152  ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKLHDDDSFTTFFSETGNGKHV 331
            ECIS+HVGQAGVQIGNACWEL+CLEHGIQ DG   +  +    DDSF TFFSETG GKHV
Sbjct: 3    ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHV 62

Query: 332  PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI 511
            PRAV VDLEPTV+DEVR GTYRQLFHPEQLITGKEDAANNYARGHYT+GKE IDLVLDRI
Sbjct: 63   PRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRI 122

Query: 512  RKLTDACSGLQGFLIFHXXXXXXXXXXXXLLMERLSLDYGKKSKLEFAIYPAPQVSTAVV 691
            RKL D C+GLQGFL+FH            LLMERLS+DYGKKSKLEF+IYPAPQVSTAVV
Sbjct: 123  RKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVV 182

Query: 692  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 871
            EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL
Sbjct: 183  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 242

Query: 872  RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM 1051
            RFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHEQL+VAEIT++CFEP +QM
Sbjct: 243  RFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQM 302

Query: 1052 VKCDPRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR--------PSSL*TGVHRXSGGH 1207
            VKCDPRHGKYMACC+LYRGDVVP D + AIA I+TKR        P+    G++      
Sbjct: 303  VKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGIN------ 356

Query: 1208 XLQPPDGVPGG 1240
              QPP  VPGG
Sbjct: 357  -YQPPTVVPGG 366


>ref|NP_006000.2| tubulin alpha-1A chain [Homo sapiens].
          Length = 451

 Score =  590 bits (1521), Expect = e-169
 Identities = 293/371 (78%), Positives = 313/371 (84%), Gaps = 8/371 (2%)
 Frame = +2

Query: 152  ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKLHDDDSFTTFFSETGNGKHV 331
            ECIS+HVGQAGVQIGNACWEL+CLEHGIQ DG   +  +    DDSF TFFSETG GKHV
Sbjct: 3    ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHV 62

Query: 332  PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI 511
            PRAV VDLEPTV+DEVR GTYRQLFHPEQLITGKEDAANNYARGHYT+GKE IDLVLDRI
Sbjct: 63   PRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRI 122

Query: 512  RKLTDACSGLQGFLIFHXXXXXXXXXXXXLLMERLSLDYGKKSKLEFAIYPAPQVSTAVV 691
            RKL D C+GLQGFL+FH            LLMERLS+DYGKKSKLEF+IYPAPQVSTAVV
Sbjct: 123  RKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVV 182

Query: 692  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 871
            EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITASL
Sbjct: 183  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASL 242

Query: 872  RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM 1051
            RFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHEQLSVAEIT++CFEP +QM
Sbjct: 243  RFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQM 302

Query: 1052 VKCDPRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR--------PSSL*TGVHRXSGGH 1207
            VKCDPRHGKYMACC+LYRGDVVP D + AIA I+TKR        P+    G++      
Sbjct: 303  VKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGIN------ 356

Query: 1208 XLQPPDGVPGG 1240
              QPP  VPGG
Sbjct: 357  -YQPPTVVPGG 366


>ref|NP_997195.1| tubulin alpha-3E chain [Homo sapiens].
          Length = 450

 Score =  588 bits (1517), Expect = e-168
 Identities = 294/371 (79%), Positives = 312/371 (84%), Gaps = 8/371 (2%)
 Frame = +2

Query: 152  ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKLHDDDSFTTFFSETGNGKHV 331
            ECIS+HVGQAGVQIGNACWEL+CLEHGIQ DG   +  +    DDSF TFFSETG GKHV
Sbjct: 3    ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHV 62

Query: 332  PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI 511
            PRAV VDLEPTVVDEVR GTYRQLFHPEQLITGKEDAA+NYARGHYT+GKE +DLVLDRI
Sbjct: 63   PRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAASNYARGHYTIGKEIVDLVLDRI 122

Query: 512  RKLTDACSGLQGFLIFHXXXXXXXXXXXXLLMERLSLDYGKKSKLEFAIYPAPQVSTAVV 691
            RKL D C+GLQGFLIFH            LLMERLS+DY KKSKLEFAIYPAPQVSTAVV
Sbjct: 123  RKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYSKKSKLEFAIYPAPQVSTAVV 182

Query: 692  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 871
            EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITASL
Sbjct: 183  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASL 242

Query: 872  RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM 1051
            RFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHEQLSVAEIT++CFEP +QM
Sbjct: 243  RFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQM 302

Query: 1052 VKCDPRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR--------PSSL*TGVHRXSGGH 1207
            VKCDPRHGKYMACCMLYRGDVVP D + AIA I+TKR        P+    G++      
Sbjct: 303  VKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGIN------ 356

Query: 1208 XLQPPDGVPGG 1240
              QPP  VPGG
Sbjct: 357  -YQPPTVVPGG 366


>ref|NP_005991.1| tubulin alpha-4A chain [Homo sapiens].
          Length = 448

 Score =  587 bits (1512), Expect = e-167
 Identities = 292/371 (78%), Positives = 314/371 (84%), Gaps = 8/371 (2%)
 Frame = +2

Query: 152  ECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKLHDDDSFTTFFSETGNGKHV 331
            ECISVHVGQAGVQ+GNACWEL+CLEHGIQ DG   +  +    DDSFTTFF ETG GKHV
Sbjct: 3    ECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHV 62

Query: 332  PRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRI 511
            PRAV VDLEPTV+DE+R G YRQLFHPEQLITGKEDAANNYARGHYT+GKE ID VLDRI
Sbjct: 63   PRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRI 122

Query: 512  RKLTDACSGLQGFLIFHXXXXXXXXXXXXLLMERLSLDYGKKSKLEFAIYPAPQVSTAVV 691
            RKL+D C+GLQGFL+FH            LLMERLS+DYGKKSKLEF+IYPAPQVSTAVV
Sbjct: 123  RKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVV 182

Query: 692  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 871
            EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL
Sbjct: 183  EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 242

Query: 872  RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQM 1051
            RFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHEQLSVAEIT++CFEP +QM
Sbjct: 243  RFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQM 302

Query: 1052 VKCDPRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR--------PSSL*TGVHRXSGGH 1207
            VKCDPRHGKYMACC+LYRGDVVP D + AIAAI+TKR        P+    G++      
Sbjct: 303  VKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGIN------ 356

Query: 1208 XLQPPDGVPGG 1240
              QPP  VPGG
Sbjct: 357  -YQPPTVVPGG 366


>ref|NP_001180343.1| tubulin alpha-8 chain isoform 2 [Homo sapiens].
          Length = 383

 Score =  518 bits (1335), Expect = e-147
 Identities = 265/307 (86%), Positives = 271/307 (88%), Gaps = 8/307 (2%)
 Frame = +2

Query: 344  MVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRIRKLT 523
            M+DLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRIRKLT
Sbjct: 1    MIDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRIRKLT 60

Query: 524  DACSGLQGFLIFHXXXXXXXXXXXXLLMERLSLDYGKKSKLEFAIYPAPQVSTAVVEPYN 703
            DACSGLQGFLIFH            LLMERLSLDYGKKSKLEFAIYPAPQVSTAVVEPYN
Sbjct: 61   DACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTAVVEPYN 120

Query: 704  SILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDG 883
            SILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDG
Sbjct: 121  SILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDG 180

Query: 884  ALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQMVKCD 1063
            ALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQMVKCD
Sbjct: 181  ALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQMVKCD 240

Query: 1064 PRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR--------PSSL*TGVHRXSGGHXLQP 1219
            PRHGKYMACCMLYRGDVVP D +VAIAAI+TKR        P+    G++        QP
Sbjct: 241  PRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGIN-------YQP 293

Query: 1220 PDGVPGG 1240
            P  VPGG
Sbjct: 294  PTVVPGG 300


>ref|NP_079079.1| tubulin alpha chain-like 3 isoform 1 [Homo sapiens].
          Length = 446

 Score =  477 bits (1227), Expect = e-134
 Identities = 229/378 (60%), Positives = 289/378 (76%), Gaps = 15/378 (3%)
 Frame = +2

Query: 152  ECISVHVGQAGVQIGNACWELFCLEHGIQADGT-FGAQASKL------HDDDSFTTFFSE 310
            EC+S+H+GQAG+QIG+ACWEL+CLEHGIQ +G     Q  +L      H + SF TFF E
Sbjct: 3    ECLSIHIGQAGIQIGDACWELYCLEHGIQPNGVVLDTQQDQLENAKMEHTNASFDTFFCE 62

Query: 311  TGNGKHVPRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESI 490
            T  GKHVPRA+ VDLEPTV+D +R G +R LFHPEQL++GKEDAANNYARG Y+VG E I
Sbjct: 63   TRAGKHVPRALFVDLEPTVIDGIRTGQHRSLFHPEQLLSGKEDAANNYARGRYSVGSEVI 122

Query: 491  DLVLDRIRKLTDACSGLQGFLIFHXXXXXXXXXXXXLLMERLSLDYGKKSKLEFAIYPAP 670
            DLVL+R RKL + C GLQGFLIF             LLMERL+ +Y +K+KLEF++YPAP
Sbjct: 123  DLVLERTRKLAEQCGGLQGFLIFRSFGGGTGSGFTSLLMERLTGEYSRKTKLEFSVYPAP 182

Query: 671  QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIV 850
            ++STAVVEPYNS+LTTH+T EH+DC FMVDNEA+YDIC R L +E P++ ++NRL+ Q+V
Sbjct: 183  RISTAVVEPYNSVLTTHSTTEHTDCTFMVDNEAVYDICHRKLGVECPSHASINRLVVQVV 242

Query: 851  SSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSC 1030
            SSITASLRF+G LNVDL EFQTNLVPYPRIHFP+  +API+SA+KAYHEQ SV++IT++C
Sbjct: 243  SSITASLRFEGPLNVDLIEFQTNLVPYPRIHFPMTAFAPIVSADKAYHEQFSVSDITTAC 302

Query: 1031 FEPNSQMVKCDPRHGKYMACCMLYRGDVVPXDRHVAIAAIQTKR--------PSSL*TGV 1186
            FE ++Q+VKCDPR GKYMACC+LYRGDVVP + + AIAA +++         P+    G+
Sbjct: 303  FESSNQLVKCDPRLGKYMACCLLYRGDVVPKEVNAAIAATKSRHSVQFVDWCPTGFKVGI 362

Query: 1187 HRXSGGHXLQPPDGVPGG 1240
            +        +PP  +PGG
Sbjct: 363  NN-------RPPTVMPGG 373


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 50,136,534
Number of extensions: 1530074
Number of successful extensions: 6520
Number of sequences better than 1.0e-05: 29
Number of HSP's gapped: 6442
Number of HSP's successfully gapped: 30
Length of query: 413
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 308
Effective length of database: 14,835,944
Effective search space: 4569470752
Effective search space used: 4569470752
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-014012
         (1240 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr05                                                        1211   0.0  
gb|GL895007.2| Sus scrofa unplaced genomic scaffold ChrUScaf2891     1203   0.0  
Sscrofa_Chr15                                                         672   0.0  
Sscrofa_Chr14                                                         628   e-177
Sscrofa_Chr03                                                         212   3e-52
Sscrofa_Chr13                                                         129   4e-27
Sscrofa_Chr10                                                          78   1e-11
gb|GL895352.1| Sus scrofa unplaced genomic scaffold chrU_scaffol...    74   2e-10

>Sscrofa_Chr05 
||          Length = 111506441

 Score = 1211 bits (611), Expect = 0.0
 Identities = 656/670 (97%), Gaps = 3/670 (0%)
 Strand = Plus / Plus

                                                                            
Query: 520      gacagatgcctgctctggcctgcagggcttcctgatcttccacagttttnnnnnnnncac 579
                |||||||||||||||||||||||||||||||||||||||||||||||||        |||
Sbjct: 72522854 gacagatgcctgctctggcctgcagggcttcctgatcttccacagttttggggggggcac 72522913

                                                                            
Query: 580      cggctctggcttcacttctctgctgatggaacgcctctccctggattacggcaagaagtc 639
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72522914 cggctctggcttcacttctctgctgatggaacgcctctccctggattacggcaagaagtc 72522973

                                                                            
Query: 640      caagctagagtttgccatctacccggcaccccaggtctccacggccgtggtggaacccta 699
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72522974 caagctagagtttgccatctacccggcaccccaggtctccacggccgtggtggaacccta 72523033

                                                                            
Query: 700      caactccatcctgaccacccacaccaccctggaacattcagactgtgccttcatggtgga 759
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72523034 caactccatcctgaccacccacaccaccctggaacattcagactgtgccttcatggtgga 72523093

                                                                            
Query: 760      caacgaggccatctacgacatctgccgcaggaacctggacatcgagcgccccacctacac 819
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72523094 caacgaggccatctacgacatctgccgcaggaacctggacatcgagcgccccacctacac 72523153

                                                                            
Query: 820      caacctcaaccgcctcatcagccagatcgtgtcctccatcaccgcctccctgcgctttga 879
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72523154 caacctcaaccgcctcatcagccagatcgtgtcctccatcaccgcctccctgcgctttga 72523213

                                                                            
Query: 880      tggggccctcaacgtggacctgaccgagttccagaccaacctggtgccctacccccgcat 939
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72523214 tggggccctcaacgtggacctgaccgagttccagaccaacctggtgccctacccccgcat 72523273

                                                                            
Query: 940      ccacttccccctggtcacctacgcacccatcatctctgctgagaaggcctaccacgagca 999
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72523274 ccacttccccctggtcacctacgcacccatcatctctgctgagaaggcctaccacgagca 72523333

                                                                            
Query: 1000     gctctctgtggctgagatcaccagctcctgctttgagcccaacagccagatggtgaagtg 1059
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72523334 gctctctgtggctgagatcaccagctcctgctttgagcccaacagccagatggtgaagtg 72523393

                                                                            
Query: 1060     tgatccccgtcatggcaagtacatggcctgctgcatgctctaccggggggacgtggtgcc 1119
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72523394 tgatccccgtcatggcaagtacatggcctgctgcatgctctaccggggggacgtggtgcc 72523453

                                                                            
Query: 1120     cnaggaccgtc-acgtcgccattgctgccatccagaccaaga-gaccatccagtttgtag 1177
                | |||| |||| ||||||||||||| |||||| ||||||||| |||||||||||||||||
Sbjct: 72523454 caagga-cgtcaacgtcgccattgccgccatcaagaccaagaggaccatccagtttgtag 72523512

                          
Query: 1178     actggtgtcc 1187
                ||||||||||
Sbjct: 72523513 actggtgtcc 72523522



 Score =  446 bits (225), Expect = e-122
 Identities = 228/229 (99%)
 Strand = Plus / Plus

                                                                            
Query: 148      gcgggaatgcatatccgtccacgtgggccaagccggggttcagatcggcaatgcctgctg 207
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72519099 gcgggaatgcatatccgtccacgtgggccaagccggggttcagatcggcaatgcctgctg 72519158

                                                                            
Query: 208      ggagctcttctgcctggagcacggcatccaggctgacggtacctttggcgcgcaggccag 267
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72519159 ggagctcttctgcctggagcacggcatccaggctgacggtacctttggcgcgcaggccag 72519218

                                                                            
Query: 268      caagctccacgacgatgactccttcaccaccttcttcagcgagaccggcaacgggaagca 327
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72519219 caagctccacgacgatgactccttcaccaccttcttcagcgagaccggcaacgggaagca 72519278

                                                                 
Query: 328      tgtgcctcgggccgtcatggttgatctggagcccaccgtggtggatgag 376
                |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 72519279 tgtgcctcgggccgtcatggttgatctggagcccaccgtggtgggtgag 72519327



 Score =  391 bits (197), Expect = e-106
 Identities = 449/533 (84%)
 Strand = Plus / Plus

                                                                            
Query: 584      tctggcttcacttctctgctgatggaacgcctctccctggattacggcaagaagtccaag 643
                ||||| ||||| || |||||||||||||| |||||  | ||||| |||||||||||||||
Sbjct: 15675205 tctgggttcacctccctgctgatggaacgtctctctgtcgattatggcaagaagtccaag 15675264

                                                                            
Query: 644      ctagagtttgccatctacccggcaccccaggtctccacggccgtggtggaaccctacaac 703
                || |||||  |||| ||||| || |||||||| ||||| || || || || |||||||||
Sbjct: 15675265 ctggagttctccatttacccagccccccaggtttccacagctgtagttgagccctacaac 15675324

                                                                            
Query: 704      tccatcctgaccacccacaccaccctggaacattcagactgtgccttcatggtggacaac 763
                |||||||| |||||||||||||||||||| || || || |||||||||||||| ||||| 
Sbjct: 15675325 tccatcctcaccacccacaccaccctggagcactctgattgtgccttcatggtagacaat 15675384

                                                                            
Query: 764      gaggccatctacgacatctgccgcaggaacctggacatcgagcgccccacctacaccaac 823
                |||||||||||||||||||| || || ||||| || || || ||||| |||||||| || 
Sbjct: 15675385 gaggccatctacgacatctgtcgtagaaaccttgatattgaacgcccaacctacactaat 15675444

                                                                            
Query: 824      ctcaaccgcctcatcagccagatcgtgtcctccatcaccgcctccctgcgctttgatggg 883
                || ||||||||||| ||||| || |||||||||||||| || |||||| | |||||||||
Sbjct: 15675445 ctgaaccgcctcatgagccaaattgtgtcctccatcactgcttccctgaggtttgatggg 15675504

                                                                            
Query: 884      gccctcaacgtggacctgaccgagttccagaccaacctggtgccctacccccgcatccac 943
                ||||| || || || ||||| || ||||||||||||||||||||||||||||||||||| 
Sbjct: 15675505 gccctgaatgttgatctgacagaattccagaccaacctggtgccctacccccgcatccat 15675564

                                                                            
Query: 944      ttccccctggtcacctacgcacccatcatctctgctgagaaggcctaccacgagcagctc 1003
                ||||| |||| ||| ||||| ||| |||||||||||||||| |||||||| || ||||| 
Sbjct: 15675565 ttccctctggccacatacgcccccgtcatctctgctgagaaagcctaccatgaacagctt 15675624

                                                                            
Query: 1004     tctgtggctgagatcaccagctcctgctttgagcccaacagccagatggtgaagtgtgat 1063
                 |||| || |||||||| |   | |||||||||||   || |||||||||||| ||||| 
Sbjct: 15675625 actgtagcagagatcactaatgcttgctttgagccagccaaccagatggtgaaatgtgac 15675684

                                                                     
Query: 1064     ccccgtcatggcaagtacatggcctgctgcatgctctaccggggggacgtggt 1116
                || || ||||| || ||||||||||||||| || | ||||| || ||||||||
Sbjct: 15675685 cctcgccatggtaaatacatggcctgctgcctgttgtaccgtggtgacgtggt 15675737



 Score =  383 bits (193), Expect = e-103
 Identities = 448/533 (84%)
 Strand = Plus / Minus

                                                                            
Query: 584      tctggcttcacttctctgctgatggaacgcctctccctggattacggcaagaagtccaag 643
                ||||| ||||| || |||||||||||||| |||||  | ||||| |||||||||||||||
Sbjct: 15557713 tctgggttcacctccctgctgatggaacgtctctctgtcgattatggcaagaagtccaag 15557654

                                                                            
Query: 644      ctagagtttgccatctacccggcaccccaggtctccacggccgtggtggaaccctacaac 703
                || |||||  |||| ||||| || |||||||| ||||| || || || || |||||||||
Sbjct: 15557653 ctggagttctccatttacccagccccccaggtttccacagctgtagttgagccctacaac 15557594

                                                                            
Query: 704      tccatcctgaccacccacaccaccctggaacattcagactgtgccttcatggtggacaac 763
                |||||||| |||||||||||||||||||| || || || |||||||||||||| ||||| 
Sbjct: 15557593 tccatcctcaccacccacaccaccctggagcactctgattgtgccttcatggtagacaat 15557534

                                                                            
Query: 764      gaggccatctacgacatctgccgcaggaacctggacatcgagcgccccacctacaccaac 823
                ||||||||||| |||||||| || || ||||| || || || ||||| |||||||| || 
Sbjct: 15557533 gaggccatctatgacatctgtcgtagaaacctcgatattgaacgcccaacctacactaat 15557474

                                                                            
Query: 824      ctcaaccgcctcatcagccagatcgtgtcctccatcaccgcctccctgcgctttgatggg 883
                || |||||||| || ||||| || |||||||||||||| || |||||| | |||||||||
Sbjct: 15557473 ctgaaccgccttattagccaaattgtgtcctccatcactgcttccctgaggtttgatggg 15557414

                                                                            
Query: 884      gccctcaacgtggacctgaccgagttccagaccaacctggtgccctacccccgcatccac 943
                ||||| ||||| || ||||| || ||||||||||||||||||||||||||||||||||| 
Sbjct: 15557413 gccctgaacgttgatctgacagaattccagaccaacctggtgccctacccccgcatccat 15557354

                                                                            
Query: 944      ttccccctggtcacctacgcacccatcatctctgctgagaaggcctaccacgagcagctc 1003
                ||||| |||| ||| ||||| ||  |||||||||||||||| |||||||| || ||||| 
Sbjct: 15557353 ttccctctggccacatacgcccctgtcatctctgctgagaaagcctaccatgaacagctt 15557294

                                                                            
Query: 1004     tctgtggctgagatcaccagctcctgctttgagcccaacagccagatggtgaagtgtgat 1063
                ||||| || |||||||| |   | |||||||||||   || |||||||||||| ||||| 
Sbjct: 15557293 tctgtagcagagatcactaatgcttgctttgagccagccaaccagatggtgaaatgtgac 15557234

                                                                     
Query: 1064     ccccgtcatggcaagtacatggcctgctgcatgctctaccggggggacgtggt 1116
                || || ||||| || ||||||||||||||| || | ||||| || ||||||||
Sbjct: 15557233 cctcgccatggtaaatacatggcctgctgcctgttgtaccgtggtgacgtggt 15557181



 Score =  341 bits (172), Expect = 6e-91
 Identities = 498/603 (82%), Gaps = 3/603 (0%)
 Strand = Plus / Minus

                                                                            
Query: 584      tctggcttcacttctctgctgatggaacgcctctccctggattacggcaagaagtccaag 643
                ||||| ||||| || |||||||||||||| |||||  | ||||| |||||||||||||||
Sbjct: 15593572 tctgggttcacctccctgctgatggaacgtctctctgtcgattatggcaagaagtccaag 15593513

                                                                            
Query: 644      ctagagtttgccatctacccggcaccccaggtctccacggccgtggtggaaccctacaac 703
                || |||||  |||| ||||| || |||||||| ||||| || || || || |||||||||
Sbjct: 15593512 ctggagttctccatttacccagccccccaggtttccacagctgtagttgagccctacaac 15593453

                                                                            
Query: 704      tccatcctgaccacccacaccaccctggaacattcagactgtgccttcatggtggacaac 763
                |||||||| |||||||||||||||||||| || || || |||||||||||||| ||||| 
Sbjct: 15593452 tccatcctcaccacccacaccaccctggagcactctgattgtgccttcatggtagacaat 15593393

                                                                            
Query: 764      gaggccatctacgacatctgccgcaggaacctggacatcgagcgccccacctacaccaac 823
                ||||||||||| |||||||| || || ||||| || || || ||||| |||||||| |||
Sbjct: 15593392 gaggccatctatgacatctgtcgtagaaacctcgatattgaacgcccaacctacactaac 15593333

                                                                            
Query: 824      ctcaaccgcctcatcagccagatcgtgtcctccatcaccgcctccctgcgctttgatggg 883
                || ||  |  | ||  | ||||| |||||||||||||| || |||||| | |||||||||
Sbjct: 15593332 ctgaataggttgataggtcagattgtgtcctccatcactgcttccctgaggtttgatggg 15593273

                                                                            
Query: 884      gccctcaacgtggacctgaccgagttccagaccaacctggtgccctacccccgcatccac 943
                ||||| || || || ||||| || ||||||||||||||||||||||| ||||||||||| 
Sbjct: 15593272 gccctgaatgttgatctgacagaattccagaccaacctggtgccctatccccgcatccat 15593213

                                                                            
Query: 944      ttccccctggtcacctacgcacccatcatctctgctgagaaggcctaccacgagcagctc 1003
                ||||| |||| ||| || || ||  |||||||||||||||| |||||||| || ||||| 
Sbjct: 15593212 ttccctctggccacatatgcccctgtcatctctgctgagaaagcctaccatgaacagctt 15593153

                                                                            
Query: 1004     tctgtggctgagatcaccagctcctgctttgagcccaacagccagatggtgaagtgtgat 1063
                ||||| || ||||||||||   | |||||||||||   || |||||||||||| ||||| 
Sbjct: 15593152 tctgtagcagagatcaccaatgcttgctttgagccagccaaccagatggtgaaatgtgac 15593093

                                                                            
Query: 1064     ccccgtcatggcaagtacatggcctgctgcatgctctaccggggggacgtggtgcccnag 1123
                || || ||||| || ||||||||||||||| || | ||||| || |||||||| ||| | 
Sbjct: 15593092 cctcgccatggtaaatacatggcctgctgcctgttgtaccgtggtgacgtggttcccaaa 15593033

                                                                            
Query: 1124     gaccgtc-acgtcgccattgctgccatccagaccaagag-accatccagtttgtagactg 1181
                || |||| | | |||||| ||  ||||| |||||||| | |||||||||||||| |||||
Sbjct: 15593032 ga-cgtcaatgccgccatcgccaccatcaagaccaagcgtaccatccagtttgtggactg 15592974

                   
Query: 1182     gtg 1184
                |||
Sbjct: 15592973 gtg 15592971



 Score =  297 bits (150), Expect = 7e-78
 Identities = 150/150 (100%)
 Strand = Plus / Plus

                                                                            
Query: 371      gatgaggttcgggcaggaacctaccgccagctcttccatccagagcagctgatcacagga 430
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72520747 gatgaggttcgggcaggaacctaccgccagctcttccatccagagcagctgatcacagga 72520806

                                                                            
Query: 431      aaagaggatgcagccaacaactatgcccggggccactacacagtgggcaaggagagcatc 490
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72520807 aaagaggatgcagccaacaactatgcccggggccactacacagtgggcaaggagagcatc 72520866

                                              
Query: 491      gacttggtgctggaccgcattcgcaagctg 520
                ||||||||||||||||||||||||||||||
Sbjct: 72520867 gacttggtgctggaccgcattcgcaagctg 72520896



 Score =  293 bits (148), Expect = 1e-76
 Identities = 148/148 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1        tgatgctgcagggcagctgctgtcccagcatgtctgtcccgggcccccctcccgcccggt 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72507680 tgatgctgcagggcagctgctgtcccagcatgtctgtcccgggcccccctcccgcccggt 72507739

                                                                            
Query: 61       gtcacaacagcggaggcggctgtatctggagcagttggggtgcgcaggcccagccgggag 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72507740 gtcacaacagcggaggcggctgtatctggagcagttggggtgcgcaggcccagccgggag 72507799

                                            
Query: 121      cgagcgggctaggagagcggccgcgatg 148
                ||||||||||||||||||||||||||||
Sbjct: 72507800 cgagcgggctaggagagcggccgcgatg 72507827



 Score =  103 bits (52), Expect = 2e-19
 Identities = 76/84 (90%)
 Strand = Plus / Minus

                                                                            
Query: 155      tgcatatccgtccacgtgggccaagccggggttcagatcggcaatgcctgctgggagctc 214
                ||||| ||| ||||||| |||||||| || || |||||||||||||||||||||||||||
Sbjct: 15558552 tgcatctccatccacgttggccaagctggtgtccagatcggcaatgcctgctgggagctc 15558493

                                        
Query: 215      ttctgcctggagcacggcatccag 238
                | ||||||||| ||||||||||||
Sbjct: 15558492 tactgcctggaacacggcatccag 15558469



 Score =  103 bits (52), Expect = 2e-19
 Identities = 76/84 (90%)
 Strand = Plus / Minus

                                                                            
Query: 155      tgcatatccgtccacgtgggccaagccggggttcagatcggcaatgcctgctgggagctc 214
                ||||| ||| ||||||| |||||||| || || |||||||||||||||||||||||||||
Sbjct: 15594408 tgcatctccatccacgttggccaagctggtgtccagatcggcaatgcctgctgggagctc 15594349

                                        
Query: 215      ttctgcctggagcacggcatccag 238
                | ||||||||| ||||||||||||
Sbjct: 15594348 tactgcctggaacacggcatccag 15594325



 Score =  103 bits (52), Expect = 2e-19
 Identities = 76/84 (90%)
 Strand = Plus / Plus

                                                                            
Query: 155      tgcatatccgtccacgtgggccaagccggggttcagatcggcaatgcctgctgggagctc 214
                ||||| ||| ||||||| |||||||| || || |||||||||||||||||||||||||||
Sbjct: 15672313 tgcatctccatccacgttggccaagctggtgtccagatcggcaatgcctgctgggagctc 15672372

                                        
Query: 215      ttctgcctggagcacggcatccag 238
                | ||||||||| ||||||||||||
Sbjct: 15672373 tactgcctggaacacggcatccag 15672396



 Score = 89.7 bits (45), Expect = 3e-15
 Identities = 84/97 (86%)
 Strand = Plus / Minus

                                                                            
Query: 389      acctaccgccagctcttccatccagagcagctgatcacaggaaaagaggatgcagccaac 448
                |||||||||||||||||||| || |||||||| |||||||| || || ||||| ||||| 
Sbjct: 15558169 acctaccgccagctcttccaccctgagcagctcatcacaggcaaggaagatgctgccaat 15558110

                                                     
Query: 449      aactatgcccggggccactacacagtgggcaaggaga 485
                ||||||||||| || ||||||||  | ||||||||||
Sbjct: 15558109 aactatgcccgaggtcactacaccattggcaaggaga 15558073



 Score = 89.7 bits (45), Expect = 3e-15
 Identities = 84/97 (86%)
 Strand = Plus / Minus

                                                                            
Query: 389      acctaccgccagctcttccatccagagcagctgatcacaggaaaagaggatgcagccaac 448
                |||||||||||||||||||| || |||||||| |||||||| || || ||||| ||||| 
Sbjct: 15594025 acctaccgccagctcttccaccctgagcagctcatcacaggcaaggaagatgctgccaat 15593966

                                                     
Query: 449      aactatgcccggggccactacacagtgggcaaggaga 485
                ||||||||||| || ||||||||  | ||||||||||
Sbjct: 15593965 aactatgcccgaggtcactacaccattggcaaggaga 15593929



 Score = 89.7 bits (45), Expect = 3e-15
 Identities = 84/97 (86%)
 Strand = Plus / Plus

                                                                            
Query: 389      acctaccgccagctcttccatccagagcagctgatcacaggaaaagaggatgcagccaac 448
                |||||||||||||||||||| || |||||||| |||||||| || || ||||| ||||| 
Sbjct: 15672696 acctaccgccagctcttccaccctgagcagctcatcacaggcaaggaagatgctgccaat 15672755

                                                     
Query: 449      aactatgcccggggccactacacagtgggcaaggaga 485
                ||||||||||| || ||||||||  | ||||||||||
Sbjct: 15672756 aactatgcccgaggtcactacaccattggcaaggaga 15672792



 Score = 71.9 bits (36), Expect = 8e-10
 Identities = 72/84 (85%)
 Strand = Plus / Minus

                                                                            
Query: 880      tggggccctcaacgtggacctgaccgagttccagaccaacctggtgccctacccccgcat 939
                ||||||||| || || || ||||| || ||||||||||| ||||||||||||||||||||
Sbjct: 23375374 tggggccctgaatgttgatctgacagaattccagaccaatctggtgccctacccccgcat 23375315

                                        
Query: 940      ccacttccccctggtcacctacgc 963
                ||| ||| | |||| ||| |||||
Sbjct: 23375314 ccatttctctctggccacatacgc 23375291



 Score = 71.9 bits (36), Expect = 8e-10
 Identities = 72/84 (85%)
 Strand = Plus / Minus

                                                                            
Query: 880      tggggccctcaacgtggacctgaccgagttccagaccaacctggtgccctacccccgcat 939
                ||||||||| || || || ||||| || ||||||||||| ||||||||||||||||||||
Sbjct: 23553189 tggggccctgaatgttgatctgacagaattccagaccaatctggtgccctacccccgcat 23553130

                                        
Query: 940      ccacttccccctggtcacctacgc 963
                ||| ||| | |||| ||| |||||
Sbjct: 23553129 ccatttctctctggccacatacgc 23553106


>gb|GL895007.2| Sus scrofa unplaced genomic scaffold ChrUScaf2891
          Length = 58772

 Score = 1203 bits (607), Expect = 0.0
 Identities = 655/670 (97%), Gaps = 3/670 (0%)
 Strand = Plus / Minus

                                                                         
Query: 520   gacagatgcctgctctggcctgcagggcttcctgatcttccacagttttnnnnnnnncac 579
             |||||||||||||||||||||||||||||||||||||||||||||||||        |||
Sbjct: 17363 gacagatgcctgctctggcctgcagggcttcctgatcttccacagttttggggggggcac 17304

                                                                         
Query: 580   cggctctggcttcacttctctgctgatggaacgcctctccctggattacggcaagaagtc 639
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17303 cggctctggcttcacttctctgctgatggaacgcctctccctggattacggcaagaagtc 17244

                                                                         
Query: 640   caagctagagtttgccatctacccggcaccccaggtctccacggccgtggtggaacccta 699
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17243 caagctagagtttgccatctacccggcaccccaggtctccacggccgtggtggaacccta 17184

                                                                         
Query: 700   caactccatcctgaccacccacaccaccctggaacattcagactgtgccttcatggtgga 759
             ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 17183 caactccatcctgaccacccacaccaccctggaacattcagaaagtgccttcatggtgga 17124

                                                                         
Query: 760   caacgaggccatctacgacatctgccgcaggaacctggacatcgagcgccccacctacac 819
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17123 caacgaggccatctacgacatctgccgcaggaacctggacatcgagcgccccacctacac 17064

                                                                         
Query: 820   caacctcaaccgcctcatcagccagatcgtgtcctccatcaccgcctccctgcgctttga 879
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17063 caacctcaaccgcctcatcagccagatcgtgtcctccatcaccgcctccctgcgctttga 17004

                                                                         
Query: 880   tggggccctcaacgtggacctgaccgagttccagaccaacctggtgccctacccccgcat 939
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17003 tggggccctcaacgtggacctgaccgagttccagaccaacctggtgccctacccccgcat 16944

                                                                         
Query: 940   ccacttccccctggtcacctacgcacccatcatctctgctgagaaggcctaccacgagca 999
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16943 ccacttccccctggtcacctacgcacccatcatctctgctgagaaggcctaccacgagca 16884

                                                                         
Query: 1000  gctctctgtggctgagatcaccagctcctgctttgagcccaacagccagatggtgaagtg 1059
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16883 gctctctgtggctgagatcaccagctcctgctttgagcccaacagccagatggtgaagtg 16824

                                                                         
Query: 1060  tgatccccgtcatggcaagtacatggcctgctgcatgctctaccggggggacgtggtgcc 1119
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16823 tgatccccgtcatggcaagtacatggcctgctgcatgctctaccggggggacgtggtgcc 16764

                                                                         
Query: 1120  cnaggaccgtc-acgtcgccattgctgccatccagaccaaga-gaccatccagtttgtag 1177
             | |||| |||| |||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 16763 caagga-cgtcaacgtcgccattgctgccatcaagaccaagaggaccatccagtttgtag 16705

                       
Query: 1178  actggtgtcc 1187
             ||||||||||
Sbjct: 16704 actggtgtcc 16695



 Score =  297 bits (150), Expect = 7e-78
 Identities = 150/150 (100%)
 Strand = Plus / Minus

                                                                         
Query: 371   gatgaggttcgggcaggaacctaccgccagctcttccatccagagcagctgatcacagga 430
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19398 gatgaggttcgggcaggaacctaccgccagctcttccatccagagcagctgatcacagga 19339

                                                                         
Query: 431   aaagaggatgcagccaacaactatgcccggggccactacacagtgggcaaggagagcatc 490
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19338 aaagaggatgcagccaacaactatgcccggggccactacacagtgggcaaggagagcatc 19279

                                           
Query: 491   gacttggtgctggaccgcattcgcaagctg 520
             ||||||||||||||||||||||||||||||
Sbjct: 19278 gacttggtgctggaccgcattcgcaagctg 19249



 Score =  218 bits (110), Expect = 6e-54
 Identities = 116/118 (98%)
 Strand = Plus / Minus

                                                                         
Query: 254   ggcgcgcaggccagcaagctccacgacgatgactccttcaccaccttcttcagcgagacc 313
             |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 21057 ggcgcgcaggccagcaagcttcacgatgatgactccttcaccaccttcttcagcgagacc 20998

                                                                       
Query: 314   ggcaacgggaagcatgtgcctcgggccgtcatggttgatctggagcccaccgtggtgg 371
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20997 ggcaacgggaagcatgtgcctcgggccgtcatggttgatctggagcccaccgtggtgg 20940



 Score =  111 bits (56), Expect = 9e-22
 Identities = 56/56 (100%)
 Strand = Plus / Minus

                                                                     
Query: 1     tgatgctgcagggcagctgctgtcccagcatgtctgtcccgggcccccctcccgcc 56
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32073 tgatgctgcagggcagctgctgtcccagcatgtctgtcccgggcccccctcccgcc 32018



 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 34/34 (100%)
 Strand = Plus / Minus

                                               
Query: 148   gcgggaatgcatatccgtccacgtgggccaagcc 181
             ||||||||||||||||||||||||||||||||||
Sbjct: 21191 gcgggaatgcatatccgtccacgtgggccaagcc 21158


>Sscrofa_Chr15 
||          Length = 157681621

 Score =  672 bits (339), Expect = 0.0
 Identities = 545/610 (89%), Gaps = 3/610 (0%)
 Strand = Plus / Plus

                                                                             
Query: 577       caccggctctggcttcacttctctgctgatggaacgcctctccctggattacggcaagaa 636
                 |||||||||||||||||| || || |||||||| || |||||  | || |||||||||||
Sbjct: 134346435 caccggctctggcttcacctcgctcctgatggagcggctctctgttgactacggcaagaa 134346494

                                                                             
Query: 637       gtccaagctagagtttgccatctacccggcaccccaggtctccacggccgtggtggaacc 696
                  |||||||| |||||  |||||||||| || || ||||| ||||| |||||||| || ||
Sbjct: 134346495 atccaagctcgagttctccatctaccctgccccgcaggtgtccacagccgtggtcgagcc 134346554

                                                                             
Query: 697       ctacaactccatcctgaccacccacaccaccctggaacattcagactgtgccttcatggt 756
                 |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 134346555 ctacaactccatcctgaccacccacaccaccctggagcactcagactgtgccttcatggt 134346614

                                                                             
Query: 757       ggacaacgaggccatctacgacatctgccgcaggaacctggacatcgagcgccccaccta 816
                 ||||||||| ||||||||||||||||||||| | ||||||||||||||||| ||||||||
Sbjct: 134346615 ggacaacgaagccatctacgacatctgccgccgcaacctggacatcgagcgtcccaccta 134346674

                                                                             
Query: 817       caccaacctcaaccgcctcatcagccagatcgtgtcctccatcaccgcctccctgcgctt 876
                 |||||||||||||||||||||| |||| ||||| ||||||||||| || |||||||||||
Sbjct: 134346675 caccaacctcaaccgcctcatcggccaaatcgtctcctccatcacagcgtccctgcgctt 134346734

                                                                             
Query: 877       tgatggggccctcaacgtggacctgaccgagttccagaccaacctggtgccctacccccg 936
                 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 134346735 tgatggggccctcaacgtggacctgacggagttccagaccaacctggtgccctaccctcg 134346794

                                                                             
Query: 937       catccacttccccctggtcacctacgcacccatcatctctgctgagaaggcctaccacga 996
                 ||||||||||||||||| |||||| |||||  |||||||||| |||||||||||||||||
Sbjct: 134346795 catccacttccccctggccacctatgcaccagtcatctctgcagagaaggcctaccacga 134346854

                                                                             
Query: 997       gcagctctctgtggctgagatcaccagctcctgctttgagcccaacagccagatggtgaa 1056
                 |||||| || ||||| |||||||||| | ||||||| |||||   || ||||||||||||
Sbjct: 134346855 gcagctgtcggtggcagagatcaccaacgcctgcttcgagcctgccaaccagatggtgaa 134346914

                                                                             
Query: 1057      gtgtgatccccgtcatggcaagtacatggcctgctgcatgctctaccggggggacgtggt 1116
                 ||||||||||||||||||||||||||||||||||||| |||| ||||| || ||||||||
Sbjct: 134346915 gtgtgatccccgtcatggcaagtacatggcctgctgcctgctgtaccgaggagacgtggt 134346974

                                                                             
Query: 1117      gcccnaggaccgtc-acgtcgccattgctgccatccagaccaagag-accatccagtttg 1174
                 |||| ||||  ||| | | |||||| ||||||||| |||||||| | |  ||||||||||
Sbjct: 134346975 gcccaagga-tgtcaatgccgccatcgctgccatcaagaccaagcgcagtatccagtttg 134347033

                           
Query: 1175      tagactggtg 1184
                 | ||||||||
Sbjct: 134347034 tggactggtg 134347043



 Score =  648 bits (327), Expect = 0.0
 Identities = 542/610 (88%), Gaps = 3/610 (0%)
 Strand = Plus / Minus

                                                                             
Query: 577       caccggctctggcttcacttctctgctgatggaacgcctctccctggattacggcaagaa 636
                 |||||||||||||||||| || || ||||||||  | |||||  | || |||||||||||
Sbjct: 134326116 caccggctctggcttcacctcgctcctgatggagaggctctctgttgactacggcaagaa 134326057

                                                                             
Query: 637       gtccaagctagagtttgccatctacccggcaccccaggtctccacggccgtggtggaacc 696
                  |||||||| |||||  |||||||||| || || ||||| ||||| |||||||| || ||
Sbjct: 134326056 atccaagctcgagttctccatctaccccgccccgcaggtgtccacagccgtggtcgagcc 134325997

                                                                             
Query: 697       ctacaactccatcctgaccacccacaccaccctggaacattcagactgtgccttcatggt 756
                 |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 134325996 ctacaactccatcctgaccacccacaccaccctggagcactcagactgtgccttcatggt 134325937

                                                                             
Query: 757       ggacaacgaggccatctacgacatctgccgcaggaacctggacatcgagcgccccaccta 816
                 ||||||||| ||||| ||||||||||||||| | ||||||||||||||||| ||||||||
Sbjct: 134325936 ggacaacgaagccatttacgacatctgccgccgcaacctggacatcgagcgtcccaccta 134325877

                                                                             
Query: 817       caccaacctcaaccgcctcatcagccagatcgtgtcctccatcaccgcctccctgcgctt 876
                 ||||||||||||||||||||||||||| ||||| ||||||||||| || |||||||||||
Sbjct: 134325876 caccaacctcaaccgcctcatcagccaaatcgtctcctccatcacagcgtccctgcgctt 134325817

                                                                             
Query: 877       tgatggggccctcaacgtggacctgaccgagttccagaccaacctggtgccctacccccg 936
                 ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 134325816 tgacggggccctcaacgtggacctgacggagttccagaccaacctggtgccctaccctcg 134325757

                                                                             
Query: 937       catccacttccccctggtcacctacgcacccatcatctctgctgagaaggcctaccacga 996
                 |||||||||||| |||| |||||| |||||  |||||||||| |||||||||||||||||
Sbjct: 134325756 catccacttcccgctggccacctatgcaccagtcatctctgcagagaaggcctaccacga 134325697

                                                                             
Query: 997       gcagctctctgtggctgagatcaccagctcctgctttgagcccaacagccagatggtgaa 1056
                 |||||| || ||||| |||||||||| | ||||||| |||||   || ||||||||||||
Sbjct: 134325696 gcagctgtcggtggcagagatcaccaacgcctgcttcgagcctgccaaccagatggtgaa 134325637

                                                                             
Query: 1057      gtgtgatccccgtcatggcaagtacatggcctgctgcatgctctaccggggggacgtggt 1116
                 ||||||||||||||||||||||||||||||||||||| |||| ||||| || ||||||||
Sbjct: 134325636 gtgtgatccccgtcatggcaagtacatggcctgctgcctgctgtaccgaggagacgtggt 134325577

                                                                             
Query: 1117      gcccnaggaccgtc-acgtcgccattgctgccatccagaccaagag-accatccagtttg 1174
                 |||| ||||  ||| | | |||||| ||||||||| |||||||| | |  ||||||||||
Sbjct: 134325576 gcccaagga-tgtcaatgccgccatcgctgccatcaagaccaagcgcagtatccagtttg 134325518

                           
Query: 1175      tagactggtg 1184
                 | ||||||||
Sbjct: 134325517 tggactggtg 134325508



 Score =  115 bits (58), Expect = 6e-23
 Identities = 127/150 (84%)
 Strand = Plus / Plus

                                                                             
Query: 371       gatgaggttcgggcaggaacctaccgccagctcttccatccagagcagctgatcacagga 430
                 |||||||||||| | || || |||||||||||||||||||| |||||||| ||||| || 
Sbjct: 134345531 gatgaggttcggacgggcacgtaccgccagctcttccatccggagcagctcatcactggg 134345590

                                                                             
Query: 431       aaagaggatgcagccaacaactatgcccggggccactacacagtgggcaaggagagcatc 490
                 || || ||||| ||||| ||||||||||| |||||||||||  | || ||||||  ||| 
Sbjct: 134345591 aaggaagatgcggccaataactatgcccgaggccactacaccattggaaaggagctcatt 134345650

                                               
Query: 491       gacttggtgctggaccgcattcgcaagctg 520
                 ||| ||||||||||||| ||||| ||||||
Sbjct: 134345651 gacctggtgctggaccgaattcggaagctg 134345680



 Score = 93.7 bits (47), Expect = 2e-16
 Identities = 110/131 (83%)
 Strand = Plus / Minus

                                                                             
Query: 390       cctaccgccagctcttccatccagagcagctgatcacaggaaaagaggatgcagccaaca 449
                 ||||||| ||||||||||| ||||||||||| ||||| || ||||||||||| || ||||
Sbjct: 134326552 cctaccggcagctcttccacccagagcagctcatcactgggaaagaggatgcggctaaca 134326493

                                                                             
Query: 450       actatgcccggggccactacacagtgggcaaggagagcatcgacttggtgctggaccgca 509
                 |||||||||| || ||||||||  | |||||||| |  || |||  ||| |||||||| |
Sbjct: 134326492 actatgcccgtggtcactacaccatcggcaaggaaattattgacccggtactggaccgga 134326433

                            
Query: 510       ttcgcaagctg 520
                 | |||||||||
Sbjct: 134326432 tccgcaagctg 134326422



 Score = 79.8 bits (40), Expect = 3e-12
 Identities = 73/84 (86%)
 Strand = Plus / Plus

                                                                             
Query: 155       tgcatatccgtccacgtgggccaagccggggttcagatcggcaatgcctgctgggagctc 214
                 ||||| || |||||||||||||| ||||| || ||||| |||||||||||||||||||||
Sbjct: 134345000 tgcatctcagtccacgtgggccaggccggtgtgcagattggcaatgcctgctgggagctc 134345059

                                         
Query: 215       ttctgcctggagcacggcatccag 238
                 | |||| |||| || || ||||||
Sbjct: 134345060 tactgcttggaacatgggatccag 134345083


>Sscrofa_Chr14 
||          Length = 153851969

 Score =  628 bits (317), Expect = e-177
 Identities = 566/648 (87%), Gaps = 3/648 (0%)
 Strand = Plus / Minus

                                                                            
Query: 539      ctgcagggcttcctgatcttccacagttttnnnnnnnncaccggctctggcttcacttct 598
                |||||||||||||| ||||||||||| |||        ||||||||| |||||| | |||
Sbjct: 54046264 ctgcagggcttcctcatcttccacagctttgggggcggcaccggctcgggcttcgcatct 54046205

                                                                            
Query: 599      ctgctgatggaacgcctctccctggattacggcaagaagtccaagctagagtttgccatc 658
                ||||| ||||| || |||||  |||| |||||||||||||||||||| ||||| ||||| 
Sbjct: 54046204 ctgctcatggagcggctctcggtggactacggcaagaagtccaagctggagttcgccatt 54046145

                                                                            
Query: 659      tacccggcaccccaggtctccacggccgtggtggaaccctacaactccatcctgaccacc 718
                |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| 
Sbjct: 54046144 tacccggccccccaggtctccacggccgtggtggagccctacaactccatcctgaccacg 54046085

                                                                            
Query: 719      cacaccaccctggaacattcagactgtgccttcatggtggacaacgaggccatctacgac 778
                ||||| |||||||| || || ||||| |||||||||||||||||||||||||||||||||
Sbjct: 54046084 cacacgaccctggagcactcggactgcgccttcatggtggacaacgaggccatctacgac 54046025

                                                                            
Query: 779      atctgccgcaggaacctggacatcgagcgccccacctacaccaacctcaaccgcctcatc 838
                ||||| ||  | ||||||||||||||||| |||||||||||||||||||| || || |||
Sbjct: 54046024 atctgtcggcgcaacctggacatcgagcggcccacctacaccaacctcaatcgtctgatc 54045965

                                                                            
Query: 839      agccagatcgtgtcctccatcaccgcctccctgcgctttgatggggccctcaacgtggac 898
                 | |||||||||||||||||||| |||||||||||||| || ||||||||||||||||||
Sbjct: 54045964 gggcagatcgtgtcctccatcacagcctccctgcgcttcgacggggccctcaacgtggac 54045905

                                                                            
Query: 899      ctgaccgagttccagaccaacctggtgccctacccccgcatccacttccccctggtcacc 958
                ||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 54045904 ctgacggagttccagaccaacctggtcccctacccccgcatccacttccccctggccacc 54045845

                                                                            
Query: 959      tacgcacccatcatctctgctgagaaggcctaccacgagcagctctctgtggctgagatc 1018
                ||||| ||  ||||||| || ||||||||||||||||||||||| |||||||| ||||||
Sbjct: 54045844 tacgccccggtcatctcggccgagaaggcctaccacgagcagctgtctgtggccgagatc 54045785

                                                                            
Query: 1019     accagctcctgctttgagcccaacagccagatggtgaagtgtgatccccgtcatggcaag 1078
                |||| | ||||||| |||||   || ||||||||| |||||||| || || || ||||||
Sbjct: 54045784 accaacgcctgcttcgagccggccaaccagatggtcaagtgtgaccctcgccacggcaag 54045725

                                                                            
Query: 1079     tacatggcctgctgcatgctctaccggggggacgtggtgcccnaggaccgtc-acgtcgc 1137
                |||||||||||||||||||| ||| |||| |||||||| ||| | || |||| |||  ||
Sbjct: 54045724 tacatggcctgctgcatgctgtacaggggagacgtggtccccaaaga-cgtcaacgcggc 54045666

                                                                
Query: 1138     cattgctgccatccagaccaagag-accatccagtttgtagactggtg 1184
                ||| ||  ||||| |||||||| | |||||||||||||| ||||||||
Sbjct: 54045665 catcgccaccatcaagaccaagcgcaccatccagtttgtggactggtg 54045618



 Score =  628 bits (317), Expect = e-177
 Identities = 566/648 (87%), Gaps = 3/648 (0%)
 Strand = Plus / Plus

                                                                            
Query: 539      ctgcagggcttcctgatcttccacagttttnnnnnnnncaccggctctggcttcacttct 598
                |||||||||||||| ||||||||||| |||        ||||||||| |||||| | |||
Sbjct: 54217778 ctgcagggcttcctcatcttccacagctttgggggcggcaccggctcgggcttcgcatct 54217837

                                                                            
Query: 599      ctgctgatggaacgcctctccctggattacggcaagaagtccaagctagagtttgccatc 658
                ||||| ||||| || |||||  |||| |||||||||||||||||||| ||||| ||||| 
Sbjct: 54217838 ctgctcatggagcggctctcggtggactacggcaagaagtccaagctggagttcgccatt 54217897

                                                                            
Query: 659      tacccggcaccccaggtctccacggccgtggtggaaccctacaactccatcctgaccacc 718
                |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| 
Sbjct: 54217898 tacccggccccccaggtctccacggccgtggtggagccctacaactccatcctgaccacg 54217957

                                                                            
Query: 719      cacaccaccctggaacattcagactgtgccttcatggtggacaacgaggccatctacgac 778
                ||||| |||||||| || || ||||| |||||||||||||||||||||||||||||||||
Sbjct: 54217958 cacacgaccctggagcactcggactgcgccttcatggtggacaacgaggccatctacgac 54218017

                                                                            
Query: 779      atctgccgcaggaacctggacatcgagcgccccacctacaccaacctcaaccgcctcatc 838
                ||||| ||  | ||||||||||||||||| |||||||||||||||||||| || || |||
Sbjct: 54218018 atctgtcggcgcaacctggacatcgagcggcccacctacaccaacctcaatcgtctgatc 54218077

                                                                            
Query: 839      agccagatcgtgtcctccatcaccgcctccctgcgctttgatggggccctcaacgtggac 898
                 | |||||||||||||||||||| |||||||||||||| || ||||||||||||||||||
Sbjct: 54218078 gggcagatcgtgtcctccatcacagcctccctgcgcttcgacggggccctcaacgtggac 54218137

                                                                            
Query: 899      ctgaccgagttccagaccaacctggtgccctacccccgcatccacttccccctggtcacc 958
                ||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 54218138 ctgacggagttccagaccaacctggtcccctacccccgcatccacttccccctggccacc 54218197

                                                                            
Query: 959      tacgcacccatcatctctgctgagaaggcctaccacgagcagctctctgtggctgagatc 1018
                ||||| ||  ||||||| || ||||||||||||||||||||||| |||||||| ||||||
Sbjct: 54218198 tacgccccggtcatctcggccgagaaggcctaccacgagcagctgtctgtggccgagatc 54218257

                                                                            
Query: 1019     accagctcctgctttgagcccaacagccagatggtgaagtgtgatccccgtcatggcaag 1078
                |||| | ||||||| |||||   || ||||||||| |||||||| || || || ||||||
Sbjct: 54218258 accaacgcctgcttcgagccggccaaccagatggtcaagtgtgaccctcgccacggcaag 54218317

                                                                            
Query: 1079     tacatggcctgctgcatgctctaccggggggacgtggtgcccnaggaccgtc-acgtcgc 1137
                |||||||||||||||||||| ||| |||| |||||||| ||| | || |||| |||  ||
Sbjct: 54218318 tacatggcctgctgcatgctgtacaggggagacgtggtccccaaaga-cgtcaacgcggc 54218376

                                                                
Query: 1138     cattgctgccatccagaccaagag-accatccagtttgtagactggtg 1184
                ||| ||  ||||| |||||||| | |||||||||||||| ||||||||
Sbjct: 54218377 catcgccaccatcaagaccaagcgcaccatccagtttgtggactggtg 54218424



 Score = 75.8 bits (38), Expect = 5e-11
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                          
Query: 165      tccacgtgggccaagccggggttcagatcggcaatgcctgctgggagctcttctgcct 222
                |||||||||| || || |||||||||||||||||||||||||||||||| | ||||||
Sbjct: 54047688 tccacgtggggcaggcaggggttcagatcggcaatgcctgctgggagctgtactgcct 54047631



 Score = 75.8 bits (38), Expect = 5e-11
 Identities = 53/58 (91%)
 Strand = Plus / Plus

                                                                          
Query: 165      tccacgtgggccaagccggggttcagatcggcaatgcctgctgggagctcttctgcct 222
                |||||||||| || || |||||||||||||||||||||||||||||||| | ||||||
Sbjct: 54216354 tccacgtggggcaggcaggggttcagatcggcaatgcctgctgggagctgtactgcct 54216411



 Score = 71.9 bits (36), Expect = 8e-10
 Identities = 96/116 (82%)
 Strand = Plus / Minus

                                                                            
Query: 389      acctaccgccagctcttccatccagagcagctgatcacaggaaaagaggatgcagccaac 448
                |||||| | ||||||||||| || |||||||||||||| || || || || |||||||||
Sbjct: 54046675 acctacaggcagctcttccacccggagcagctgatcaccgggaaggaagacgcagccaac 54046616

                                                                        
Query: 449      aactatgcccggggccactacacagtgggcaaggagagcatcgacttggtgctgga 504
                || || ||| | |||||||||||  | ||||||||||   ||||| ||||||||||
Sbjct: 54046615 aattacgccagaggccactacaccatcggcaaggagattgtcgacctggtgctgga 54046560



 Score = 71.9 bits (36), Expect = 8e-10
 Identities = 96/116 (82%)
 Strand = Plus / Plus

                                                                            
Query: 389      acctaccgccagctcttccatccagagcagctgatcacaggaaaagaggatgcagccaac 448
                |||||| | ||||||||||| || |||||||||||||| || || || || |||||||||
Sbjct: 54217367 acctacaggcagctcttccacccggagcagctgatcaccgggaaggaagacgcagccaac 54217426

                                                                        
Query: 449      aactatgcccggggccactacacagtgggcaaggagagcatcgacttggtgctgga 504
                || || ||| | |||||||||||  | ||||||||||   ||||| ||||||||||
Sbjct: 54217427 aattacgccagaggccactacaccatcggcaaggagattgtcgacctggtgctgga 54217482


>Sscrofa_Chr03 
||          Length = 144787322

 Score =  212 bits (107), Expect = 3e-52
 Identities = 282/339 (83%), Gaps = 1/339 (0%)
 Strand = Plus / Plus

                                                                             
Query: 670       ccaggtctccacggccgtggtggaaccctacaactccatcctgaccacccacaccaccct 729
                 |||||| ||||| || || || || ||||||||||||||||| |||||||||||||||||
Sbjct: 132554042 ccaggtttccacagctgtagttgagccctacaactccatcctcaccacccacaccaccct 132554101

                                                                             
Query: 730       ggaacattcagactgtgccttcatggtggacaacgaggccatctacgacatctgccgcag 789
                 ||| || ||||  |||||||||||||| | |||||||||| |||  |||| ||| || ||
Sbjct: 132554102 ggagcactcaggttgtgccttcatggtaggcaacgaggccgtctctgacacctgtcgtag 132554161

                                                                             
Query: 790       gaacctggacatcgagcgccccacctacaccaacctcaaccgcctcatcagccagatcgt 849
                  ||||| || || |||||||| |||| ||| || |  ||||| || ||||||||||| ||
Sbjct: 132554162 aaacctcgatattgagcgcccaacctgcactaatccgaaccgtcttatcagccagattgt 132554221

                                                                             
Query: 850       gtcctccatcaccgcctccctgcgctttgatggggccctcaacgtggacctgaccgagtt 909
                 |||||||||| | || |||||| | |||||||||||  | || ||||| || || || ||
Sbjct: 132554222 gtcctccatcgctgcttccctgaggtttgatggggctttgaatgtggatctcacagaatt 132554281

                                                                             
Query: 910       ccagaccaacctggtgccctacccccgcatccacttccccctggtcacctacgcacccat 969
                 ||||||||||||||||||||||||||||||||||||||| |||| |||  | || ||  |
Sbjct: 132554282 ccagaccaacctggtgccctacccccgcatccacttccctctggccacacatgcccctgt 132554341

                                                        
Query: 970       catctctgctgagaaggcctaccacgagcagctctctgt 1008
                 ||||||||||||||| |||||||| || ||||| |||||
Sbjct: 132554342 catctctgctgagaa-gcctaccaggaacagctttctgt 132554379



 Score = 99.6 bits (50), Expect = 4e-18
 Identities = 313/398 (78%), Gaps = 2/398 (0%)
 Strand = Plus / Plus

                                                                            
Query: 623      gattacggcaagaagtccaagctagagtttgccatctacccggcaccccaggtctccacg 682
                ||||| ||||||||||||||||| ||| |  |||| ||||| || |||||||| | ||| 
Sbjct: 49836030 gattatggcaagaagtccaagctggaggtctccatttacccagccccccaggtttgcact 49836089

                                                                            
Query: 683      gccgtggtggaaccctacaactccatcctgaccacccacaccaccctggaacattcagac 742
                || || || || |||||||||||||||||  ||||||||||||||| ||| || || || 
Sbjct: 49836090 gctgtagttgagccctacaactccatcctctccacccacaccacccaggagcactctgat 49836149

                                                                            
Query: 743      tgtgccttcatggtggacaacgaggccatctacgacatctgccgcaggaacctggacatc 802
                |||||||||||||| | | || || ||||||| ||||||||  | || || |  || || 
Sbjct: 49836150 tgtgccttcatggtaggccacaagtccatctatgacatctgtggtagaaaacacgatatt 49836209

                                                                            
Query: 803      gagcgccccacctacaccaacctcaaccgcctcatcagccagatcgtgtcctccatcacc 862
                |||||||| ||||||||    || |||| | |||| || | ||| |||||||||||||| 
Sbjct: 49836210 gagcgcccaacctacactcctctgaacctcgtcattag-ctgattgtgtcctccatcact 49836268

                                                                            
Query: 863      gcctccctgcgctttgatggggccctcaacgtggacctgaccgagttccagaccaacctg 922
                || |||||| | || | ||| ||||| ||||| || ||||| || | |||||||| | ||
Sbjct: 49836269 gcttccctggggttgggtggagccctgaacgttgatctgacagaatgccagaccaccttg 49836328

                                                                            
Query: 923      gtgccctacccccgcatccacttccccctggtcacctacgcacccatcatctctgctgag 982
                 ||||||  | | ||||||| ||||| ||   ||| || || ||  ||||||||||||||
Sbjct: 49836329 atgccctgtcgctgcatccatttccctctttccacttaggc-cctgtcatctctgctgag 49836387

                                                      
Query: 983      aaggcctaccacgagcagctctctgtggctgagatcac 1020
                || |||||||| || ||||| ||||| || ||||||||
Sbjct: 49836388 aaagcctaccatgaacagctttctgtagcagagatcac 49836425


>Sscrofa_Chr13 
||          Length = 218635234

 Score =  129 bits (65), Expect = 4e-27
 Identities = 227/281 (80%)
 Strand = Plus / Minus

                                                                             
Query: 704       tccatcctgaccacccacaccaccctggaacattcagactgtgccttcatggtggacaac 763
                 |||||||| ||||||||||||||| ||||  | || || |||||||||||||| ||||| 
Sbjct: 105966315 tccatccttaccacccacaccaccgtggagaactctgattgtgccttcatggtagacaat 105966256

                                                                             
Query: 764       gaggccatctacgacatctgccgcaggaacctggacatcgagcgccccacctacaccaac 823
                 ||||||||||| |||||||  |  || ||||| || || |||| |||  ||||||| |  
Sbjct: 105966255 gaggccatctatgacatctttcatagaaaccttgatattgagcacccatcctacactact 105966196

                                                                             
Query: 824       ctcaaccgcctcatcagccagatcgtgtcctccatcaccgcctccctgcgctttgatggg 883
                 || |||| |||||| |||||||| |||||||||||||| || || ||| | |||||||| 
Sbjct: 105966195 ctgaaccacctcattagccagattgtgtcctccatcactgcttctctgaggtttgatgga 105966136

                                                                             
Query: 884       gccctcaacgtggacctgaccgagttccagaccaacctggtgccctacccccgcatccac 943
                 ||| | || || || ||||| || |||||||||| | || |||||||| || ||||||| 
Sbjct: 105966135 gccatgaatgttgatctgacagaattccagaccagcttgttgccctactcctgcatccat 105966076

                                                          
Query: 944       ttccccctggtcacctacgcacccatcatctctgctgagaa 984
                 ||||| |||| ||| || || ||  ||||||||||||||||
Sbjct: 105966075 ttccctctggccacatatgcccctgtcatctctgctgagaa 105966035



 Score =  129 bits (65), Expect = 4e-27
 Identities = 227/281 (80%)
 Strand = Plus / Minus

                                                                             
Query: 704       tccatcctgaccacccacaccaccctggaacattcagactgtgccttcatggtggacaac 763
                 |||||||| ||||||||||||||| ||||  | || || |||||||||||||| ||||| 
Sbjct: 106117881 tccatccttaccacccacaccaccgtggagaactctgattgtgccttcatggtagacaat 106117822

                                                                             
Query: 764       gaggccatctacgacatctgccgcaggaacctggacatcgagcgccccacctacaccaac 823
                 ||||||||||| |||||||  |  || ||||| || || |||| |||  ||||||| |  
Sbjct: 106117821 gaggccatctatgacatctttcatagaaaccttgatattgagcacccatcctacactact 106117762

                                                                             
Query: 824       ctcaaccgcctcatcagccagatcgtgtcctccatcaccgcctccctgcgctttgatggg 883
                 || |||| |||||| |||||||| |||||||||||||| || || ||| | |||||||| 
Sbjct: 106117761 ctgaaccacctcattagccagattgtgtcctccatcactgcttctctgaggtttgatgga 106117702

                                                                             
Query: 884       gccctcaacgtggacctgaccgagttccagaccaacctggtgccctacccccgcatccac 943
                 ||| | || || || ||||| || |||||||||| | || |||||||| || ||||||| 
Sbjct: 106117701 gccatgaatgttgatctgacagaattccagaccagcttgttgccctactcctgcatccat 106117642

                                                          
Query: 944       ttccccctggtcacctacgcacccatcatctctgctgagaa 984
                 ||||| |||| ||| || || ||  ||||||||||||||||
Sbjct: 106117641 ttccctctggccacatatgcccctgtcatctctgctgagaa 106117601


>Sscrofa_Chr10 
||          Length = 79102373

 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 204/259 (78%)
 Strand = Plus / Minus

                                                                            
Query: 675      tctccacggccgtggtggaaccctacaactccatcctgaccacccacaccaccctggaac 734
                ||||||| ||||||||||| || || |||||| |||| ||||| ||| ||||| | || |
Sbjct: 71596950 tctccactgccgtggtggagccttataactccgtccttaccacacaccccaccatagagc 71596891

                                                                            
Query: 735      attcagactgtgccttcatggtggacaacgaggccatctacgacatctgccgcaggaacc 794
                | ||||||||  ||||| || ||||||| |||||| |||| ||||| |||| |   || |
Sbjct: 71596890 actcagactgcaccttcctgctggacaatgaggccgtctatgacatatgccaccacaaac 71596831

                                                                            
Query: 795      tggacatcgagcgccccacctacaccaacctcaaccgcctcatcagccagatcgtgtcct 854
                | ||||| || |||||| | ||| ||| | | ||| | ||  | ||||||   || ||||
Sbjct: 71596830 ttgacattgaacgcccctcttacgccagcattaacaggctggtgagccaggcggtctcct 71596771

                                                                            
Query: 855      ccatcaccgcctccctgcgctttgatggggccctcaacgtggacctgaccgagttccaga 914
                ||||||| || ||||| || ||||| ||||||||||||||||||||    || |||||||
Sbjct: 71596770 ccatcacggcttccctccggtttgagggggccctcaacgtggacctagtggaattccaga 71596711

                                   
Query: 915      ccaacctggtgccctaccc 933
                |||||||||| || |||||
Sbjct: 71596710 ccaacctggtcccttaccc 71596692



 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 204/259 (78%)
 Strand = Plus / Plus

                                                                            
Query: 675      tctccacggccgtggtggaaccctacaactccatcctgaccacccacaccaccctggaac 734
                ||||||| ||||||||||| || || |||||| |||| ||||| ||| ||||| | || |
Sbjct: 71671951 tctccactgccgtggtggagccttataactccgtccttaccacacaccccaccatagagc 71672010

                                                                            
Query: 735      attcagactgtgccttcatggtggacaacgaggccatctacgacatctgccgcaggaacc 794
                | ||||||||  ||||| || ||||||| |||||| |||| ||||| |||| |   || |
Sbjct: 71672011 actcagactgcaccttcctgctggacaatgaggccgtctatgacatatgccaccacaaac 71672070

                                                                            
Query: 795      tggacatcgagcgccccacctacaccaacctcaaccgcctcatcagccagatcgtgtcct 854
                | ||||| || |||||| | ||| ||| | | ||| | ||  | ||||||   || ||||
Sbjct: 71672071 ttgacattgaacgcccctcttacgccagcattaacaggctggtgagccaggcggtctcct 71672130

                                                                            
Query: 855      ccatcaccgcctccctgcgctttgatggggccctcaacgtggacctgaccgagttccaga 914
                ||||||| || ||||| || ||||| ||||||||||||||||||||    || |||||||
Sbjct: 71672131 ccatcacggcttccctccggtttgagggggccctcaacgtggacctagtggaattccaga 71672190

                                   
Query: 915      ccaacctggtgccctaccc 933
                |||||||||| || |||||
Sbjct: 71672191 ccaacctggtcccttaccc 71672209


>gb|GL895352.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3926
          Length = 32274

 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 76/89 (85%)
 Strand = Plus / Plus

                                                                        
Query: 155  tgcatatccgtccacgtgggccaagccggggttcagatcggcaatgcctgctgggagctc 214
            ||||| ||| ||||||  ||||||||| | || ||| | |||| ||||||||||||||||
Sbjct: 7342 tgcatctccatccacgctggccaagcctgtgtccaggttggcagtgcctgctgggagctc 7401

                                         
Query: 215  ttctgcctggagcacggcatccaggctga 243
            | ||||||||| |||||||||||| ||||
Sbjct: 7402 tactgcctggaacacggcatccagcctga 7430


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,194,524
Number of extensions: 212
Number of successful extensions: 212
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 45
Length of query: 1240
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1219
Effective length of database: 2,808,413,156
Effective search space: 3423455637164
Effective search space used: 3423455637164
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)