Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014026
(1032 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068861.1| non-homologous end-joining factor 1 [Bos tau... 411 e-115
>ref|NP_001068861.1| non-homologous end-joining factor 1 [Bos taurus].
Length = 299
Score = 411 bits (1057), Expect = e-115
Identities = 206/260 (79%), Positives = 218/260 (83%)
Frame = +3
Query: 249 PWAWLQLSENSLLAKAYITQQGYALLVSDLQQVWHEQVDTSVVSQRAKELNKRLTAPPAA 428
PWAWLQL+ENSLLAKAYIT+QGYALLVSDLQQVWHEQVDTSV+SQRAKELNKRLTAPP A
Sbjct: 12 PWAWLQLAENSLLAKAYITRQGYALLVSDLQQVWHEQVDTSVISQRAKELNKRLTAPPEA 71
Query: 429 FXXXXXXXXXXXXKDIACPGKATFSCDRVAETLILRVRSELSGLPFYWNFHCTLATPSLV 608
F KD +CPG ATFSCDRVAE LIL+VRSELSGLPFYWNFHC LA+PSLV
Sbjct: 72 FLRHLDDLLRPLLKDASCPGTATFSCDRVAEALILQVRSELSGLPFYWNFHCILASPSLV 131
Query: 609 TQHLIRPLMGMSLALQCQVRELATLLRMKDLEIQDYQESGALLSRDRLKTEPFEEKSFLE 788
+QHLIRPLMGMSLALQCQVR+L TLL MKDLEIQDYQESGA LSRDRLKTEPFEE SFLE
Sbjct: 132 SQHLIRPLMGMSLALQCQVRDLTTLLHMKDLEIQDYQESGATLSRDRLKTEPFEESSFLE 191
Query: 789 QFMVEKLPEACSVGDGRPFVTNLQSLYMAVTRQEILVGQEHQGTGDPXXXXXXXXXDANG 968
QFMVEKLPEACSVGDGRPF+ NLQS+YMAVTRQ I VGQ+H TGDP +
Sbjct: 192 QFMVEKLPEACSVGDGRPFIANLQSMYMAVTRQAIQVGQKHHDTGDPHTSSSAFSQGTDN 251
Query: 969 QLLNQPEEPVSSAPSLPVPE 1028
Q LNQ EEPVSS PSLP PE
Sbjct: 252 QRLNQLEEPVSSTPSLPGPE 271
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,504,850
Number of extensions: 1140247
Number of successful extensions: 4881
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4864
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 241
Effective length of database: 14,273,310
Effective search space: 3439867710
Effective search space used: 3439867710
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-014026
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014026
(1032 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_853192.1| PREDICTED: hypothetical protein XP_848099 [Cani... 404 e-113
>ref|XP_853192.1| PREDICTED: hypothetical protein XP_848099 [Canis familiaris].
Length = 346
Score = 404 bits (1038), Expect = e-113
Identities = 205/261 (78%), Positives = 219/261 (83%)
Frame = +3
Query: 249 PWAWLQLSENSLLAKAYITQQGYALLVSDLQQVWHEQVDTSVVSQRAKELNKRLTAPPAA 428
PWAWLQL+ENSL+ KAYIT+QGYALLVSDLQQVWHE+VD SVVSQRAKELNKRLTAPPAA
Sbjct: 59 PWAWLQLAENSLMVKAYITKQGYALLVSDLQQVWHEEVDASVVSQRAKELNKRLTAPPAA 118
Query: 429 FXXXXXXXXXXXXKDIACPGKATFSCDRVAETLILRVRSELSGLPFYWNFHCTLATPSLV 608
F KD P +A F+CD VAE LILRVRSELSGLPFYWNFHC A+PSLV
Sbjct: 119 FLCHLDDLLRPLLKDTTFPSEAMFTCDHVAEALILRVRSELSGLPFYWNFHCIPASPSLV 178
Query: 609 TQHLIRPLMGMSLALQCQVRELATLLRMKDLEIQDYQESGALLSRDRLKTEPFEEKSFLE 788
+QHL+RPLMGMSLALQCQVRELATLLRMKDLEIQDYQESGA+LSRDRLKTEPFEE SFLE
Sbjct: 179 SQHLVRPLMGMSLALQCQVRELATLLRMKDLEIQDYQESGAVLSRDRLKTEPFEENSFLE 238
Query: 789 QFMVEKLPEACSVGDGRPFVTNLQSLYMAVTRQEILVGQEHQGTGDPXXXXXXXXXDANG 968
QFMVEKLPEACSVG+GRPFVTNLQSLYMAVTRQEI V QEH GT D A
Sbjct: 239 QFMVEKLPEACSVGNGRPFVTNLQSLYMAVTRQEIQVRQEHLGTEDLQPSSSASPPGAEN 298
Query: 969 QLLNQPEEPVSSAPSLPVPEK 1031
QL+NQP+E +SSAPSLPVPEK
Sbjct: 299 QLVNQPKELISSAPSLPVPEK 319
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,244,018
Number of extensions: 1175968
Number of successful extensions: 4799
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4767
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 240
Effective length of database: 15,407,560
Effective search space: 3697814400
Effective search space used: 3697814400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014026
(1032 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001925547.2| PREDICTED: non-homologous end-joining factor... 474 e-134
Alignment gi|XP_001925561.2| PREDICTED: solute carrier family 23 member 3... 54 2e-07
>ref|XP_001925547.2| PREDICTED: non-homologous end-joining factor 1 [Sus scrofa].
Length = 305
Score = 474 bits (1220), Expect = e-134
Identities = 243/278 (87%), Positives = 243/278 (87%)
Frame = +3
Query: 198 MKTXXXXXXXXXXXXXXPWAWLQLSENSLLAKAYITQQGYALLVSDLQQVWHEQVDTSVV 377
MKT PWAWLQLSENSLLAKAYITQQGYALLVSDLQQVWHEQVDTSVV
Sbjct: 1 MKTLLQMEELEQGLLMQPWAWLQLSENSLLAKAYITQQGYALLVSDLQQVWHEQVDTSVV 60
Query: 378 SQRAKELNKRLTAPPAAFXXXXXXXXXXXXKDIACPGKATFSCDRVAETLILRVRSELSG 557
SQRAKELNKRLTAPPAAF KDIACPGKATFSCDRVAETLILRVRSELSG
Sbjct: 61 SQRAKELNKRLTAPPAAFLCRLDELLRPLLKDIACPGKATFSCDRVAETLILRVRSELSG 120
Query: 558 LPFYWNFHCTLATPSLVTQHLIRPLMGMSLALQCQVRELATLLRMKDLEIQDYQESGALL 737
LPFYWNFHCTLATPSLVTQHLIRPLMGMSLALQCQVRELATLLRMKDLEIQDYQESGALL
Sbjct: 121 LPFYWNFHCTLATPSLVTQHLIRPLMGMSLALQCQVRELATLLRMKDLEIQDYQESGALL 180
Query: 738 SRDRLKTEPFEEKSFLEQFMVEKLPEACSVGDGRPFVTNLQSLYMAVTRQEILVGQEHQG 917
SRDRLKTEPFEEKSFLEQFMVEKLPEACSVGDGRPFVTNLQSLYMAVTRQEILVGQEHQG
Sbjct: 181 SRDRLKTEPFEEKSFLEQFMVEKLPEACSVGDGRPFVTNLQSLYMAVTRQEILVGQEHQG 240
Query: 918 TGDPXXXXXXXXXDANGQLLNQPEEPVSSAPSLPVPEK 1031
TGDP DANGQLLNQPEEPVSSAPSLPVPEK
Sbjct: 241 TGDPQTSSSTSSQDANGQLLNQPEEPVSSAPSLPVPEK 278
>ref|XP_001925561.2| PREDICTED: solute carrier family 23 member 3 [Sus scrofa].
Length = 556
Score = 53.5 bits (127), Expect = 2e-07
Identities = 23/24 (95%), Positives = 23/24 (95%)
Frame = +1
Query: 1 DPASPWTRGKAFTLGLSVCAGGPA 72
DPASPW RGKAFTLGLSVCAGGPA
Sbjct: 485 DPASPWMRGKAFTLGLSVCAGGPA 508
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,136,396
Number of extensions: 734327
Number of successful extensions: 3122
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3098
Number of HSP's successfully gapped: 2
Length of query: 344
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 244
Effective length of database: 8,854,232
Effective search space: 2160432608
Effective search space used: 2160432608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014026
(1032 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_083618.3| non-homologous end-joining factor 1 [Mus muscul... 340 1e-93
>ref|NP_083618.3| non-homologous end-joining factor 1 [Mus musculus].
Length = 295
Score = 340 bits (871), Expect = 1e-93
Identities = 178/260 (68%), Positives = 199/260 (76%)
Frame = +3
Query: 249 PWAWLQLSENSLLAKAYITQQGYALLVSDLQQVWHEQVDTSVVSQRAKELNKRLTAPPAA 428
PWAWLQL+ENSLLAK IT+ GYALL+SDLQQVWHEQVDTSVVSQRAKELNKRLTAPPAA
Sbjct: 12 PWAWLQLAENSLLAKVSITKHGYALLISDLQQVWHEQVDTSVVSQRAKELNKRLTAPPAA 71
Query: 429 FXXXXXXXXXXXXKDIACPGKATFSCDRVAETLILRVRSELSGLPFYWNFHCTLATPSLV 608
KD A P KATFSCDR E LILRV+SELSGLPF W+FHC A+ SLV
Sbjct: 72 LLCHLDEALRPLFKDSAHPSKATFSCDRGEEGLILRVQSELSGLPFSWHFHCIPASSSLV 131
Query: 609 TQHLIRPLMGMSLALQCQVRELATLLRMKDLEIQDYQESGALLSRDRLKTEPFEEKSFLE 788
+QHLI PLMG+SLALQ VRELA LLRMKDLEIQ YQESGA+LSR RLKTEPFEE SFLE
Sbjct: 132 SQHLIHPLMGVSLALQSHVRELAALLRMKDLEIQAYQESGAVLSRSRLKTEPFEENSFLE 191
Query: 789 QFMVEKLPEACSVGDGRPFVTNLQSLYMAVTRQEILVGQEHQGTGDPXXXXXXXXXDANG 968
QFM EKLPEAC+VGDG+PF +LQSLY+AVT+Q+I Q H+ +G+ +
Sbjct: 192 QFMAEKLPEACAVGDGKPFAMSLQSLYVAVTKQQIQARQAHKDSGETQASSSTSPRGTD- 250
Query: 969 QLLNQPEEPVSSAPSLPVPE 1028
NQPEEPVS + +L PE
Sbjct: 251 ---NQPEEPVSLSSTLSEPE 267
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,048,290
Number of extensions: 959224
Number of successful extensions: 3750
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3732
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 242
Effective length of database: 12,553,887
Effective search space: 3038040654
Effective search space used: 3038040654
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014026
(1032 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079058.1| non-homologous end-joining factor 1 [Homo sapie... 401 e-112
>ref|NP_079058.1| non-homologous end-joining factor 1 [Homo sapiens].
Length = 299
Score = 401 bits (1030), Expect = e-112
Identities = 201/261 (77%), Positives = 217/261 (83%)
Frame = +3
Query: 249 PWAWLQLSENSLLAKAYITQQGYALLVSDLQQVWHEQVDTSVVSQRAKELNKRLTAPPAA 428
PWAWLQL+ENSLLAK +IT+QGYALLVSDLQQVWHEQVDTSVVSQRAKELNKRLTAPPAA
Sbjct: 12 PWAWLQLAENSLLAKVFITKQGYALLVSDLQQVWHEQVDTSVVSQRAKELNKRLTAPPAA 71
Query: 429 FXXXXXXXXXXXXKDIACPGKATFSCDRVAETLILRVRSELSGLPFYWNFHCTLATPSLV 608
F KD A P +ATFSCD VA+ LILRVRSELSGLPFYWNFHC LA+PSLV
Sbjct: 72 FLCHLDNLLRPLLKDAAHPSEATFSCDCVADALILRVRSELSGLPFYWNFHCMLASPSLV 131
Query: 609 TQHLIRPLMGMSLALQCQVRELATLLRMKDLEIQDYQESGALLSRDRLKTEPFEEKSFLE 788
+QHLIRPLMGMSLALQCQVRELATLL MKDLEIQDYQESGA L RDRLKTEPFEE SFLE
Sbjct: 132 SQHLIRPLMGMSLALQCQVRELATLLHMKDLEIQDYQESGATLIRDRLKTEPFEENSFLE 191
Query: 789 QFMVEKLPEACSVGDGRPFVTNLQSLYMAVTRQEILVGQEHQGTGDPXXXXXXXXXDANG 968
QFM+EKLPEACS+GDG+PFV NLQ LYMAVT QE+ VGQ+HQG GDP +
Sbjct: 192 QFMIEKLPEACSIGDGKPFVMNLQDLYMAVTTQEVQVGQKHQGAGDPHTSNSASLQGIDS 251
Query: 969 QLLNQPEEPVSSAPSLPVPEK 1031
Q +NQPE+ VSSAP+L PEK
Sbjct: 252 QCVNQPEQLVSSAPTLSAPEK 272
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,506,626
Number of extensions: 1155363
Number of successful extensions: 4813
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4785
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 241
Effective length of database: 14,901,872
Effective search space: 3591351152
Effective search space used: 3591351152
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014026
(1032 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 563 e-158
>Sscrofa_Chr15
|| Length = 157681621
Score = 563 bits (284), Expect = e-158
Identities = 284/284 (100%)
Strand = Plus / Minus
Query: 110 gggaggaattttcacaagatgtatttgacatagaactgtctgagtggtgtccccccaggc 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134228592 gggaggaattttcacaagatgtatttgacatagaactgtctgagtggtgtccccccaggc 134228533
Query: 170 ctacagtaccctggggggctcttgttgaatgaagactctcctgcagatggaggaactgga 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134228532 ctacagtaccctggggggctcttgttgaatgaagactctcctgcagatggaggaactgga 134228473
Query: 230 gcaaggcctgctgatgcagccgtgggcatggctacagctttctgagaactccctcttggc 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134228472 gcaaggcctgctgatgcagccgtgggcatggctacagctttctgagaactccctcttggc 134228413
Query: 290 taaggcttatatcacccagcagggctatgccttgctggtttcagatcttcagcaggtatg 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134228412 taaggcttatatcacccagcagggctatgccttgctggtttcagatcttcagcaggtatg 134228353
Query: 350 gcatgaacaggtggacactagcgtggtcagccagagagcaaagg 393
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134228352 gcatgaacaggtggacactagcgtggtcagccagagagcaaagg 134228309
Score = 430 bits (217), Expect = e-118
Identities = 217/217 (100%)
Strand = Plus / Minus
Query: 391 aggagctgaacaagcgcctgactgctcctcctgcagcttttctctgtcgcctggatgagc 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134227589 aggagctgaacaagcgcctgactgctcctcctgcagcttttctctgtcgcctggatgagc 134227530
Query: 451 tgcttcgcccgttgttgaaggacattgcttgccctggcaaagctacattctcctgtgacc 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134227529 tgcttcgcccgttgttgaaggacattgcttgccctggcaaagctacattctcctgtgacc 134227470
Query: 511 gtgtggcagaaacactgatactgcgggtgcggagtgagctctccggtctcccattctatt 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134227469 gtgtggcagaaacactgatactgcgggtgcggagtgagctctccggtctcccattctatt 134227410
Query: 571 ggaatttccactgcaccctagctaccccatcactggt 607
|||||||||||||||||||||||||||||||||||||
Sbjct: 134227409 ggaatttccactgcaccctagctaccccatcactggt 134227373
Score = 278 bits (140), Expect = 6e-72
Identities = 140/140 (100%)
Strand = Plus / Minus
Query: 605 ggtcacccaacatttgattcgtcctctgatgggcatgagtctggcgttgcagtgccaagt 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134219040 ggtcacccaacatttgattcgtcctctgatgggcatgagtctggcgttgcagtgccaagt 134218981
Query: 665 gagggagctagcaacattgcttcgtatgaaagacctagagatccaggactaccaggagag 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134218980 gagggagctagcaacattgcttcgtatgaaagacctagagatccaggactaccaggagag 134218921
Query: 725 tggggccctgctgagccgag 744
||||||||||||||||||||
Sbjct: 134218920 tggggccctgctgagccgag 134218901
Score = 240 bits (121), Expect = 1e-60
Identities = 121/121 (100%)
Strand = Plus / Minus
Query: 802 agaaactaccagaggcatgcagtgttggtgatggaagaccttttgtcacaaatctacaga 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134146526 agaaactaccagaggcatgcagtgttggtgatggaagaccttttgtcacaaatctacaga 134146467
Query: 862 gtctgtatatggcagtcaccagacaagagatcctagtgggacaggagcatcaaggcacag 921
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134146466 gtctgtatatggcagtcaccagacaagagatcctagtgggacaggagcatcaaggcacag 134146407
Query: 922 g 922
|
Sbjct: 134146406 g 134146406
Score = 226 bits (114), Expect = 2e-56
Identities = 114/114 (100%)
Strand = Plus / Minus
Query: 919 caggagatccccagacctcaagcagtacctcctcccaggatgccaatggccagcttctga 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134145858 caggagatccccagacctcaagcagtacctcctcccaggatgccaatggccagcttctga 134145799
Query: 979 accagccagaggagccagtctcctcagcaccatccctcccagtgcctgagaagg 1032
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134145798 accagccagaggagccagtctcctcagcaccatccctcccagtgcctgagaagg 134145745
Score = 212 bits (107), Expect = 3e-52
Identities = 110/111 (99%)
Strand = Plus / Minus
Query: 1 gaccccgcctccccgtggacgcggggaaaggcttttactctaggcctctcggtttgcgcg 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 134232477 gaccccgcctccccgtggatgcggggaaaggcttttactctaggcctctcggtttgcgcg 134232418
Query: 61 ggcgggccagcctgccgcggggagggtgagagttcttgcggccgctcacgg 111
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Sbjct: 134232417 ggcgggccagcctgccgcggggagggtgagagttcttgcggccgctcacgg 134232367
Score = 121 bits (61), Expect = 8e-25
Identities = 61/61 (100%)
Strand = Plus / Minus
Query: 743 agatcggttgaagacagagccatttgaagagaagtccttcttggaacagtttatggtaga 802
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Sbjct: 134218321 agatcggttgaagacagagccatttgaagagaagtccttcttggaacagtttatggtaga 134218262
Query: 803 g 803
|
Sbjct: 134218261 g 134218261
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,681,175
Number of extensions: 140
Number of successful extensions: 140
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 7
Length of query: 1032
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1011
Effective length of database: 2,808,413,156
Effective search space: 2839305700716
Effective search space used: 2839305700716
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)