Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014032
(1221 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_538383.2| PREDICTED: similar to 2-amino-3-ketobutyrate co... 642 0.0
Alignment gi|XP_548619.2| PREDICTED: similar to 5-aminolevulinate synthas... 203 2e-52
Alignment gi|XP_533804.2| PREDICTED: similar to 5-aminolevulinate synthas... 188 1e-47
Alignment gi|XP_859921.1| PREDICTED: similar to 5-aminolevulinate synthas... 188 1e-47
Alignment gi|XP_859886.1| PREDICTED: similar to 5-aminolevulinate synthas... 188 1e-47
Alignment gi|XP_859846.1| PREDICTED: similar to 5-aminolevulinate synthas... 188 1e-47
Alignment gi|XP_859816.1| PREDICTED: similar to 5-aminolevulinate synthas... 188 1e-47
Alignment gi|XP_859784.1| PREDICTED: similar to 5-aminolevulinate synthas... 188 1e-47
Alignment gi|XP_542889.2| PREDICTED: similar to serine palmitoyltransfera... 139 6e-33
Alignment gi|XP_537524.2| PREDICTED: similar to serine palmitoyltransfera... 137 2e-32
>ref|XP_538383.2| PREDICTED: similar to 2-amino-3-ketobutyrate coenzyme A ligase,
mitochondrial precursor (AKB ligase) (Glycine
acetyltransferase) [Canis familiaris].
Length = 419
Score = 642 bits (1655), Expect = 0.0
Identities = 326/383 (85%), Positives = 339/383 (88%)
Frame = +1
Query: 70 MWAGRILCAALSRAPRGCRPQSALAQXXXXXXXXXXXXXXAGTWKSERVITSRQGPRIHV 249
MWAGR+L AA S APRG R SAL Q AGTWKSERVITSRQGPRIHV
Sbjct: 1 MWAGRVLRAAPSAAPRGRRALSALTQLRGVLEEELDAIRGAGTWKSERVITSRQGPRIHV 60
Query: 250 DGVSGGIINFCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKDLEAKIA 429
DGVSGGI+NFCANNYLGLSSHPEVIQAGLQALEEFGAGLSS RFICGTQSIHKDLEAKIA
Sbjct: 61 DGVSGGILNFCANNYLGLSSHPEVIQAGLQALEEFGAGLSSTRFICGTQSIHKDLEAKIA 120
Query: 430 RFHQREDAILYPSCFDANAGLFEALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLD 609
RFHQREDAILYPSCFDANAGLFEALL+P+DAVLSDELNHASIIDGIRLCKAHKYRYRHLD
Sbjct: 121 RFHQREDAILYPSCFDANAGLFEALLSPQDAVLSDELNHASIIDGIRLCKAHKYRYRHLD 180
Query: 610 VADLEAKLQEAQKHRLRLVATDGTFSMDGDIAPLQDICRLASQYGALVFVDDCHATGFLG 789
+ADLEAKLQEAQ HRLRLVATDG FSMDGDIAPLQ+IC LAS+YGALVFVD+CHATGFLG
Sbjct: 181 MADLEAKLQEAQNHRLRLVATDGAFSMDGDIAPLQEICHLASRYGALVFVDECHATGFLG 240
Query: 790 ATGRGTDELLGVMDQVAIINSTLGKALXXXXXXXXXXXXXLVSLLRQRARPYLFSNSLPP 969
ATGRGTDELLGVMDQV IINSTLGKAL LVSLLRQRARPYLFSNSLPP
Sbjct: 241 ATGRGTDELLGVMDQVTIINSTLGKALGGASGGYTTGPGPLVSLLRQRARPYLFSNSLPP 300
Query: 970 AVVGCASKALDLLMENNAIVQSMAAKTQRFRRKMEAAGFTISGGHHPICPVMLGDARLAS 1149
AVVGCASKALDLLME+NAIVQSMAAKT+RFR KMEAAGFT+ G HPICPVMLGDARLAS
Sbjct: 301 AVVGCASKALDLLMESNAIVQSMAAKTKRFRSKMEAAGFTVLGASHPICPVMLGDARLAS 360
Query: 1150 CMANDMAKRGIFVIGFSYPVVPR 1218
CMA+DM KRGIFVIGFSYPVVP+
Sbjct: 361 CMADDMLKRGIFVIGFSYPVVPK 383
>ref|XP_548619.2| PREDICTED: similar to 5-aminolevulinate synthase, erythroid-specific,
mitochondrial precursor (5-aminolevulinic acid synthase)
(Delta-aminolevulinate synthase) (Delta-ALA synthetase)
(ALAS-E) [Canis familiaris].
Length = 587
Score = 203 bits (517), Expect = 2e-52
Identities = 122/319 (38%), Positives = 181/319 (56%), Gaps = 5/319 (1%)
Frame = +1
Query: 277 FCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKDLEAKIARFHQREDAI 456
+C+N+YLG+S HP V+QA + L+ GAG R I GT H +LE ++A HQ++ A+
Sbjct: 194 WCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVELEQELAELHQKDAAL 253
Query: 457 LYPSCFDAN-AGLFE-ALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDVADLEAK 630
L+ SCF AN + LF A + P + SD NHAS+I GIR A K+ +RH D L+
Sbjct: 254 LFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAAKFVFRHNDPDHLKKL 313
Query: 631 LQEAQKHRLRLVATDGTFSMDGDIAPLQDICRLASQYGALVFVDDCHATGFLGATGRGTD 810
L+E+ ++VA + SMDG I PL+++C +A QYGAL FVD+ HA G G G G
Sbjct: 314 LKESNTRTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVHAVGLYGPQGAGIG 373
Query: 811 ELLGVMDQVAIINSTLGKALXXXXXXXXXXXXXLVSLLRQRARPYLFSNSLPPAVVGCAS 990
E GVM ++ I++ TLGKA LV ++R A ++F+ SLPP V+ A
Sbjct: 374 ERDGVMHKIDIVSGTLGKAF-GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGAL 432
Query: 991 KALDLLM--ENNAIVQSMAAKTQRFRRKMEAAGFTISGGHHPICPVMLGDARLASCMAN- 1161
+++ LL E A+ ++ + R+ + G + I P+ +GDA L S + +
Sbjct: 433 ESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRVGDAALNSKICDL 492
Query: 1162 DMAKRGIFVIGFSYPVVPR 1218
++K GI+V +YP VPR
Sbjct: 493 LLSKHGIYVQAINYPTVPR 511
>ref|XP_533804.2| PREDICTED: similar to 5-aminolevulinate synthase, nonspecific,
mitochondrial precursor (5-aminolevulinic acid synthase)
(Delta-aminolevulinate synthase) (Delta-ALA synthetase)
(ALAS-H) isoform 1 [Canis familiaris].
Length = 640
Score = 188 bits (477), Expect = 1e-47
Identities = 113/319 (35%), Positives = 177/319 (55%), Gaps = 5/319 (1%)
Frame = +1
Query: 277 FCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKDLEAKIARFHQREDAI 456
+C+N+YLG+S HP V A + L++ GAG R I GT H DLE ++A H ++ A+
Sbjct: 248 WCSNDYLGMSRHPRVCGAVMDTLKQHGAGAGGTRNISGTSKFHVDLEQELADLHGKDAAL 307
Query: 457 LYPSCFDAN-AGLFE-ALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDVADLEAK 630
L+ SCF AN + LF A + P + SD NHAS+I GIR + KY +RH DV+ L
Sbjct: 308 LFSSCFVANDSTLFTLARMMPGCEIYSDSGNHASMIQGIRNSRVPKYIFRHNDVSHLREL 367
Query: 631 LQEAQKHRLRLVATDGTFSMDGDIAPLQDICRLASQYGALVFVDDCHATGFLGATGRGTD 810
LQ + ++VA + SMDG + PL+++C +A ++GA+ FVD+ HA G GA G G
Sbjct: 368 LQRSDPSVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGLYGARGGGIG 427
Query: 811 ELLGVMDQVAIINSTLGKALXXXXXXXXXXXXXLVSLLRQRARPYLFSNSLPPAVVGCAS 990
+ GVM ++ II+ TLGKA L+ +R A ++F+ SLPP ++ A
Sbjct: 428 DRDGVMPKMDIISGTLGKAF-GCVGGYIASTSSLIDTVRSYAAGFIFTTSLPPMLLAGAL 486
Query: 991 KALDLL--MENNAIVQSMAAKTQRFRRKMEAAGFTISGGHHPICPVMLGDARLASCMAND 1164
+++ +L E A+ + + R+ + AG + I PV + +A + + ++
Sbjct: 487 ESVRILKSAEGRALRRQHQRNVKLMRQMLMDAGLPVVHCPSHIIPVRVANAAKNTEVCDE 546
Query: 1165 -MAKRGIFVIGFSYPVVPR 1218
M++ I+V +YP VPR
Sbjct: 547 LMSRHNIYVQAINYPTVPR 565
>ref|XP_859921.1| PREDICTED: similar to 5-aminolevulinate synthase, nonspecific,
mitochondrial precursor (5-aminolevulinic acid synthase)
(Delta-aminolevulinate synthase) (Delta-ALA synthetase)
(ALAS-H) isoform 6 [Canis familiaris].
Length = 623
Score = 188 bits (477), Expect = 1e-47
Identities = 113/319 (35%), Positives = 177/319 (55%), Gaps = 5/319 (1%)
Frame = +1
Query: 277 FCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKDLEAKIARFHQREDAI 456
+C+N+YLG+S HP V A + L++ GAG R I GT H DLE ++A H ++ A+
Sbjct: 231 WCSNDYLGMSRHPRVCGAVMDTLKQHGAGAGGTRNISGTSKFHVDLEQELADLHGKDAAL 290
Query: 457 LYPSCFDAN-AGLFE-ALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDVADLEAK 630
L+ SCF AN + LF A + P + SD NHAS+I GIR + KY +RH DV+ L
Sbjct: 291 LFSSCFVANDSTLFTLARMMPGCEIYSDSGNHASMIQGIRNSRVPKYIFRHNDVSHLREL 350
Query: 631 LQEAQKHRLRLVATDGTFSMDGDIAPLQDICRLASQYGALVFVDDCHATGFLGATGRGTD 810
LQ + ++VA + SMDG + PL+++C +A ++GA+ FVD+ HA G GA G G
Sbjct: 351 LQRSDPSVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGLYGARGGGIG 410
Query: 811 ELLGVMDQVAIINSTLGKALXXXXXXXXXXXXXLVSLLRQRARPYLFSNSLPPAVVGCAS 990
+ GVM ++ II+ TLGKA L+ +R A ++F+ SLPP ++ A
Sbjct: 411 DRDGVMPKMDIISGTLGKAF-GCVGGYIASTSSLIDTVRSYAAGFIFTTSLPPMLLAGAL 469
Query: 991 KALDLL--MENNAIVQSMAAKTQRFRRKMEAAGFTISGGHHPICPVMLGDARLASCMAND 1164
+++ +L E A+ + + R+ + AG + I PV + +A + + ++
Sbjct: 470 ESVRILKSAEGRALRRQHQRNVKLMRQMLMDAGLPVVHCPSHIIPVRVANAAKNTEVCDE 529
Query: 1165 -MAKRGIFVIGFSYPVVPR 1218
M++ I+V +YP VPR
Sbjct: 530 LMSRHNIYVQAINYPTVPR 548
>ref|XP_859886.1| PREDICTED: similar to 5-aminolevulinate synthase, nonspecific,
mitochondrial precursor (5-aminolevulinic acid synthase)
(Delta-aminolevulinate synthase) (Delta-ALA synthetase)
(ALAS-H) isoform 5 [Canis familiaris].
Length = 625
Score = 188 bits (477), Expect = 1e-47
Identities = 113/319 (35%), Positives = 177/319 (55%), Gaps = 5/319 (1%)
Frame = +1
Query: 277 FCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKDLEAKIARFHQREDAI 456
+C+N+YLG+S HP V A + L++ GAG R I GT H DLE ++A H ++ A+
Sbjct: 233 WCSNDYLGMSRHPRVCGAVMDTLKQHGAGAGGTRNISGTSKFHVDLEQELADLHGKDAAL 292
Query: 457 LYPSCFDAN-AGLFE-ALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDVADLEAK 630
L+ SCF AN + LF A + P + SD NHAS+I GIR + KY +RH DV+ L
Sbjct: 293 LFSSCFVANDSTLFTLARMMPGCEIYSDSGNHASMIQGIRNSRVPKYIFRHNDVSHLREL 352
Query: 631 LQEAQKHRLRLVATDGTFSMDGDIAPLQDICRLASQYGALVFVDDCHATGFLGATGRGTD 810
LQ + ++VA + SMDG + PL+++C +A ++GA+ FVD+ HA G GA G G
Sbjct: 353 LQRSDPSVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGLYGARGGGIG 412
Query: 811 ELLGVMDQVAIINSTLGKALXXXXXXXXXXXXXLVSLLRQRARPYLFSNSLPPAVVGCAS 990
+ GVM ++ II+ TLGKA L+ +R A ++F+ SLPP ++ A
Sbjct: 413 DRDGVMPKMDIISGTLGKAF-GCVGGYIASTSSLIDTVRSYAAGFIFTTSLPPMLLAGAL 471
Query: 991 KALDLL--MENNAIVQSMAAKTQRFRRKMEAAGFTISGGHHPICPVMLGDARLASCMAND 1164
+++ +L E A+ + + R+ + AG + I PV + +A + + ++
Sbjct: 472 ESVRILKSAEGRALRRQHQRNVKLMRQMLMDAGLPVVHCPSHIIPVRVANAAKNTEVCDE 531
Query: 1165 -MAKRGIFVIGFSYPVVPR 1218
M++ I+V +YP VPR
Sbjct: 532 LMSRHNIYVQAINYPTVPR 550
>ref|XP_859846.1| PREDICTED: similar to 5-aminolevulinate synthase, nonspecific,
mitochondrial precursor (5-aminolevulinic acid synthase)
(Delta-aminolevulinate synthase) (Delta-ALA synthetase)
(ALAS-H) isoform 4 [Canis familiaris].
Length = 642
Score = 188 bits (477), Expect = 1e-47
Identities = 113/319 (35%), Positives = 177/319 (55%), Gaps = 5/319 (1%)
Frame = +1
Query: 277 FCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKDLEAKIARFHQREDAI 456
+C+N+YLG+S HP V A + L++ GAG R I GT H DLE ++A H ++ A+
Sbjct: 250 WCSNDYLGMSRHPRVCGAVMDTLKQHGAGAGGTRNISGTSKFHVDLEQELADLHGKDAAL 309
Query: 457 LYPSCFDAN-AGLFE-ALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDVADLEAK 630
L+ SCF AN + LF A + P + SD NHAS+I GIR + KY +RH DV+ L
Sbjct: 310 LFSSCFVANDSTLFTLARMMPGCEIYSDSGNHASMIQGIRNSRVPKYIFRHNDVSHLREL 369
Query: 631 LQEAQKHRLRLVATDGTFSMDGDIAPLQDICRLASQYGALVFVDDCHATGFLGATGRGTD 810
LQ + ++VA + SMDG + PL+++C +A ++GA+ FVD+ HA G GA G G
Sbjct: 370 LQRSDPSVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGLYGARGGGIG 429
Query: 811 ELLGVMDQVAIINSTLGKALXXXXXXXXXXXXXLVSLLRQRARPYLFSNSLPPAVVGCAS 990
+ GVM ++ II+ TLGKA L+ +R A ++F+ SLPP ++ A
Sbjct: 430 DRDGVMPKMDIISGTLGKAF-GCVGGYIASTSSLIDTVRSYAAGFIFTTSLPPMLLAGAL 488
Query: 991 KALDLL--MENNAIVQSMAAKTQRFRRKMEAAGFTISGGHHPICPVMLGDARLASCMAND 1164
+++ +L E A+ + + R+ + AG + I PV + +A + + ++
Sbjct: 489 ESVRILKSAEGRALRRQHQRNVKLMRQMLMDAGLPVVHCPSHIIPVRVANAAKNTEVCDE 548
Query: 1165 -MAKRGIFVIGFSYPVVPR 1218
M++ I+V +YP VPR
Sbjct: 549 LMSRHNIYVQAINYPTVPR 567
>ref|XP_859816.1| PREDICTED: similar to 5-aminolevulinate synthase, nonspecific,
mitochondrial precursor (5-aminolevulinic acid synthase)
(Delta-aminolevulinate synthase) (Delta-ALA synthetase)
(ALAS-H) isoform 3 [Canis familiaris].
Length = 628
Score = 188 bits (477), Expect = 1e-47
Identities = 113/319 (35%), Positives = 177/319 (55%), Gaps = 5/319 (1%)
Frame = +1
Query: 277 FCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKDLEAKIARFHQREDAI 456
+C+N+YLG+S HP V A + L++ GAG R I GT H DLE ++A H ++ A+
Sbjct: 236 WCSNDYLGMSRHPRVCGAVMDTLKQHGAGAGGTRNISGTSKFHVDLEQELADLHGKDAAL 295
Query: 457 LYPSCFDAN-AGLFE-ALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDVADLEAK 630
L+ SCF AN + LF A + P + SD NHAS+I GIR + KY +RH DV+ L
Sbjct: 296 LFSSCFVANDSTLFTLARMMPGCEIYSDSGNHASMIQGIRNSRVPKYIFRHNDVSHLREL 355
Query: 631 LQEAQKHRLRLVATDGTFSMDGDIAPLQDICRLASQYGALVFVDDCHATGFLGATGRGTD 810
LQ + ++VA + SMDG + PL+++C +A ++GA+ FVD+ HA G GA G G
Sbjct: 356 LQRSDPSVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGLYGARGGGIG 415
Query: 811 ELLGVMDQVAIINSTLGKALXXXXXXXXXXXXXLVSLLRQRARPYLFSNSLPPAVVGCAS 990
+ GVM ++ II+ TLGKA L+ +R A ++F+ SLPP ++ A
Sbjct: 416 DRDGVMPKMDIISGTLGKAF-GCVGGYIASTSSLIDTVRSYAAGFIFTTSLPPMLLAGAL 474
Query: 991 KALDLL--MENNAIVQSMAAKTQRFRRKMEAAGFTISGGHHPICPVMLGDARLASCMAND 1164
+++ +L E A+ + + R+ + AG + I PV + +A + + ++
Sbjct: 475 ESVRILKSAEGRALRRQHQRNVKLMRQMLMDAGLPVVHCPSHIIPVRVANAAKNTEVCDE 534
Query: 1165 -MAKRGIFVIGFSYPVVPR 1218
M++ I+V +YP VPR
Sbjct: 535 LMSRHNIYVQAINYPTVPR 553
>ref|XP_859784.1| PREDICTED: similar to 5-aminolevulinate synthase, nonspecific,
mitochondrial precursor (5-aminolevulinic acid synthase)
(Delta-aminolevulinate synthase) (Delta-ALA synthetase)
(ALAS-H) isoform 2 [Canis familiaris].
Length = 629
Score = 188 bits (477), Expect = 1e-47
Identities = 113/319 (35%), Positives = 177/319 (55%), Gaps = 5/319 (1%)
Frame = +1
Query: 277 FCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKDLEAKIARFHQREDAI 456
+C+N+YLG+S HP V A + L++ GAG R I GT H DLE ++A H ++ A+
Sbjct: 237 WCSNDYLGMSRHPRVCGAVMDTLKQHGAGAGGTRNISGTSKFHVDLEQELADLHGKDAAL 296
Query: 457 LYPSCFDAN-AGLFE-ALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDVADLEAK 630
L+ SCF AN + LF A + P + SD NHAS+I GIR + KY +RH DV+ L
Sbjct: 297 LFSSCFVANDSTLFTLARMMPGCEIYSDSGNHASMIQGIRNSRVPKYIFRHNDVSHLREL 356
Query: 631 LQEAQKHRLRLVATDGTFSMDGDIAPLQDICRLASQYGALVFVDDCHATGFLGATGRGTD 810
LQ + ++VA + SMDG + PL+++C +A ++GA+ FVD+ HA G GA G G
Sbjct: 357 LQRSDPSVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGLYGARGGGIG 416
Query: 811 ELLGVMDQVAIINSTLGKALXXXXXXXXXXXXXLVSLLRQRARPYLFSNSLPPAVVGCAS 990
+ GVM ++ II+ TLGKA L+ +R A ++F+ SLPP ++ A
Sbjct: 417 DRDGVMPKMDIISGTLGKAF-GCVGGYIASTSSLIDTVRSYAAGFIFTTSLPPMLLAGAL 475
Query: 991 KALDLL--MENNAIVQSMAAKTQRFRRKMEAAGFTISGGHHPICPVMLGDARLASCMAND 1164
+++ +L E A+ + + R+ + AG + I PV + +A + + ++
Sbjct: 476 ESVRILKSAEGRALRRQHQRNVKLMRQMLMDAGLPVVHCPSHIIPVRVANAAKNTEVCDE 535
Query: 1165 -MAKRGIFVIGFSYPVVPR 1218
M++ I+V +YP VPR
Sbjct: 536 LMSRHNIYVQAINYPTVPR 554
>ref|XP_542889.2| PREDICTED: similar to serine palmitoyltransferase, long chain base
subunit 2 [Canis familiaris].
Length = 552
Score = 139 bits (350), Expect = 6e-33
Identities = 101/336 (30%), Positives = 169/336 (50%), Gaps = 18/336 (5%)
Frame = +1
Query: 268 IINFCANNYLGLS-SHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKDLEAKIARFHQR 444
+IN + N+LGL+ S+ E ++ LEE+G G++S R GT H++LE +A+F
Sbjct: 162 VINMGSYNFLGLAASYDESMRTVKDVLEEYGLGVASTRHEMGTLDKHEELENLVAKFLNV 221
Query: 445 EDAILYPSCFDANAGLFEALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDVADLE 624
E A+++ F N+ AL+ +LSDELNHAS++ G RL A ++H ++ LE
Sbjct: 222 EAAMVFGMGFATNSMNIPALVGKGCLILSDELNHASLVLGARLSGATIRIFKHNNMQSLE 281
Query: 625 AKLQEA---QKHRLR------LVATDGTFSMDGDIAPLQDICRLASQYGALVFVDDCHAT 777
L++A + R+R L+ +G +SM+G I L I L +Y A +++D+ H+
Sbjct: 282 KLLRDAVIYGQPRVRRAWKKILILVEGIYSMEGSIVHLPQIVALKKKYKAYLYIDEAHSI 341
Query: 778 GFLGATGRGTDELLGVMDQ-VAIINSTLGKALXXXXXXXXXXXXXLVSLLRQRARPYLFS 954
G +G TGRG E G+ + V ++ T K+ LV LR + +++
Sbjct: 342 GSVGPTGRGVVEFFGLDPRDVDVLMGTFTKSF-GAAGGYIAGRKELVDYLRVHSHSAVYA 400
Query: 955 NSLPPAVVGCASKALDLLM------ENNAIVQSMAAKTQRFRRKMEAAGFTISGGHH-PI 1113
S+ P V +++ L+M E V+ +A T+ FR+++ GF I G P+
Sbjct: 401 TSMSPPVAEQIIRSMKLIMGLDGTTEGLQRVRQLAKNTRYFRQRLNEMGFIIYGNEESPV 460
Query: 1114 CPVMLGDARLASCMANDMAKRGIFVIGFSYPVVPRA 1221
P++L + A + R I V+ +P P A
Sbjct: 461 IPLLLYMPAKVAAFARHLLNRKIGVVVVGFPATPLA 496
>ref|XP_537524.2| PREDICTED: similar to serine palmitoyltransferase, long chain base
subunit 2 [Canis familiaris].
Length = 691
Score = 137 bits (346), Expect = 2e-32
Identities = 99/342 (28%), Positives = 163/342 (47%), Gaps = 18/342 (5%)
Frame = +1
Query: 244 HVDGVSGGIINFCANNYLGLSSHPEVIQ-AGLQALEEFGAGLSSVRFICGTQSIHKDLEA 420
+ V G+IN + NYLG + + Q A + LEE+G G+ S R G H++LE
Sbjct: 291 YTGNVIKGVINMGSYNYLGFARNTGACQEAAAKVLEEYGVGVCSTRQEIGNLDKHEELEK 350
Query: 421 KIARFHQREDAILYPSCFDANAGLFEALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYR 600
+A F E A+ Y F N+ AL+ +LSDELNHAS++ G RL A ++
Sbjct: 351 LVASFLGVEAAMAYGMGFATNSMNIPALVGKGCLILSDELNHASLVLGARLSGATIRIFK 410
Query: 601 HLDVADLEAKLQEA---------QKHRLRLVATDGTFSMDGDIAPLQDICRLASQYGALV 753
H ++ LE L++A + + L+ +G +SM+G I L ++ L +Y A +
Sbjct: 411 HNNMQSLEKLLKDAIVYGQPRTRRPWKKILILVEGIYSMEGSIVRLPEVIALKKKYKAYL 470
Query: 754 FVDDCHATGFLGATGRGTDELLGV-MDQVAIINSTLGKALXXXXXXXXXXXXXLVSLLRQ 930
++D+ H+ G LG +GRG + G+ + V ++ T K+ L+ LR
Sbjct: 471 YLDEAHSIGALGPSGRGVVDYFGLDPEDVDVMMGTFTKSF-GASGGYIGGKKELIDYLRT 529
Query: 931 RARPYLFSNSLPPAVVGCASKALDLLMENNA------IVQSMAAKTQRFRRKMEAAGFTI 1092
+ +++ SL VV ++ +M + +Q +A T+ FRR+++ GF I
Sbjct: 530 HSHSAVYATSLSAPVVEQIVTSMKCIMGQDGTTLGKQCIQQLAENTRYFRRRLKEMGFII 589
Query: 1093 SGGH-HPICPVMLGDARLASCMANDMAKRGIFVIGFSYPVVP 1215
G P+ P+ML +M KR I V+ +P P
Sbjct: 590 YGNEDSPVVPLMLYMPAKIGAFGREMLKRNIGVVVVGFPATP 631
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 53,029,926
Number of extensions: 1692906
Number of successful extensions: 8078
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 7985
Number of HSP's successfully gapped: 12
Length of query: 407
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 302
Effective length of database: 15,374,224
Effective search space: 4643015648
Effective search space used: 4643015648
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-014032
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014032
(1221 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068602.1| 2-amino-3-ketobutyrate coenzyme A ligase, mi... 631 0.0
Alignment gi|NP_001030275.1| 5-aminolevulinate synthase, erythroid-specif... 201 1e-51
Alignment gi|NP_001094624.1| 5-aminolevulinate synthase, nonspecific, mit... 183 3e-46
Alignment gi|NP_001092551.1| serine palmitoyltransferase 2 [Bos taurus]. 138 9e-33
Alignment gi|XP_002692086.1| PREDICTED: serine palmitoyltransferase, long... 137 1e-32
Alignment gi|XP_602826.3| PREDICTED: serine palmitoyltransferase, long ch... 129 4e-30
Alignment gi|NP_001029921.1| serine palmitoyltransferase 1 [Bos taurus]. 121 1e-27
>ref|NP_001068602.1| 2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial precursor
[Bos taurus].
Length = 419
Score = 631 bits (1628), Expect = 0.0
Identities = 324/383 (84%), Positives = 336/383 (87%)
Frame = +1
Query: 70 MWAGRILCAALSRAPRGCRPQSALAQXXXXXXXXXXXXXXAGTWKSERVITSRQGPRIHV 249
MWAGR+L AALSRAPR R QSALAQ AGTWKSERVITSRQGP IHV
Sbjct: 1 MWAGRVLHAALSRAPRESRAQSALAQLRGILEEELESIRGAGTWKSERVITSRQGPHIHV 60
Query: 250 DGVSGGIINFCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKDLEAKIA 429
DG GGIINFCANNYLGLSSHPEVIQAGL+ L+EFGAGLSSVRFICGTQSIHKDLEAKIA
Sbjct: 61 DGAPGGIINFCANNYLGLSSHPEVIQAGLRTLKEFGAGLSSVRFICGTQSIHKDLEAKIA 120
Query: 430 RFHQREDAILYPSCFDANAGLFEALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLD 609
RFHQREDAILYPSCFDAN GLFEALLT EDAVLSDELNHASIIDGIRLCKAHKYRYRHLD
Sbjct: 121 RFHQREDAILYPSCFDANTGLFEALLTSEDAVLSDELNHASIIDGIRLCKAHKYRYRHLD 180
Query: 610 VADLEAKLQEAQKHRLRLVATDGTFSMDGDIAPLQDICRLASQYGALVFVDDCHATGFLG 789
+ADLEAKLQEAQKHRLRLVATDG FSMDGDIAPLQ+ICRLASQYGALVFVD+ HATGFLG
Sbjct: 181 MADLEAKLQEAQKHRLRLVATDGAFSMDGDIAPLQEICRLASQYGALVFVDESHATGFLG 240
Query: 790 ATGRGTDELLGVMDQVAIINSTLGKALXXXXXXXXXXXXXLVSLLRQRARPYLFSNSLPP 969
ATGRGTDELLGVMDQV IINSTLGKAL LVSLLRQRARPYLFSNSLPP
Sbjct: 241 ATGRGTDELLGVMDQVTIINSTLGKALGGASGGYTTGPGALVSLLRQRARPYLFSNSLPP 300
Query: 970 AVVGCASKALDLLMENNAIVQSMAAKTQRFRRKMEAAGFTISGGHHPICPVMLGDARLAS 1149
A VGCASKALDLLME+NAIVQSMAAKT RFR +MEAAGFTISG +HPICPVMLGDARLA
Sbjct: 301 AAVGCASKALDLLMESNAIVQSMAAKTLRFRSQMEAAGFTISGANHPICPVMLGDARLAL 360
Query: 1150 CMANDMAKRGIFVIGFSYPVVPR 1218
+A+DM KRGIFVIGFSYPVVP+
Sbjct: 361 NIADDMLKRGIFVIGFSYPVVPK 383
>ref|NP_001030275.1| 5-aminolevulinate synthase, erythroid-specific, mitochondrial
precursor [Bos taurus].
Length = 587
Score = 201 bits (511), Expect = 1e-51
Identities = 120/319 (37%), Positives = 182/319 (57%), Gaps = 5/319 (1%)
Frame = +1
Query: 277 FCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKDLEAKIARFHQREDAI 456
+C+N+YLG+S HP V+QA + L+ GAG R I GT H +LE ++A HQ++ A+
Sbjct: 194 WCSNDYLGMSRHPRVLQATQEILQRHGAGAGGTRNISGTSKFHVELEQELAELHQKDSAL 253
Query: 457 LYPSCFDAN-AGLFE-ALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDVADLEAK 630
L+ SCF AN + LF A + P + SD NHAS+I GIR A K+ +RH D L+
Sbjct: 254 LFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAAKFVFRHNDPDHLKKL 313
Query: 631 LQEAQKHRLRLVATDGTFSMDGDIAPLQDICRLASQYGALVFVDDCHATGFLGATGRGTD 810
L+++ ++VA + SMDG I PL+++C +A QYGAL FVD+ HA G G+ G G
Sbjct: 314 LKKSNPETPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIG 373
Query: 811 ELLGVMDQVAIINSTLGKALXXXXXXXXXXXXXLVSLLRQRARPYLFSNSLPPAVVGCAS 990
E G+M ++ II+ TLGKA LV ++R A ++F+ SLPP V+ A
Sbjct: 374 ERDGIMHKIDIISGTLGKAF-GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGAL 432
Query: 991 KALDLLM--ENNAIVQSMAAKTQRFRRKMEAAGFTISGGHHPICPVMLGDARLASCMAN- 1161
+++ LL E A+ ++ + R+ + G + I P+ +GDA L + + +
Sbjct: 433 ESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRVGDAMLNTRICDL 492
Query: 1162 DMAKRGIFVIGFSYPVVPR 1218
++K GI+V +YP VPR
Sbjct: 493 LLSKYGIYVQAINYPTVPR 511
>ref|NP_001094624.1| 5-aminolevulinate synthase, nonspecific, mitochondrial precursor [Bos
taurus].
Length = 647
Score = 183 bits (464), Expect = 3e-46
Identities = 111/319 (34%), Positives = 173/319 (54%), Gaps = 5/319 (1%)
Frame = +1
Query: 277 FCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKDLEAKIARFHQREDAI 456
+C+N+YLG+S HP V A + L++ G G R I GT H DLE ++A H ++ A+
Sbjct: 255 WCSNDYLGMSRHPRVCGAVIDTLKQHGTGAGGTRNISGTSKFHVDLEQELADLHGKDAAL 314
Query: 457 LYPSCFDAN-AGLFE-ALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDVADLEAK 630
L+ SCF AN + LF A + P + SD NHAS+I GIR KY +RH DV+ L
Sbjct: 315 LFSSCFVANDSTLFTLAKMMPGCEIYSDAGNHASMIQGIRNSGVPKYIFRHNDVSHLREL 374
Query: 631 LQEAQKHRLRLVATDGTFSMDGDIAPLQDICRLASQYGALVFVDDCHATGFLGATGRGTD 810
LQ + ++VA + SMDG + PL+++C +A ++GA+ FVD+ HA G G G G
Sbjct: 375 LQRSDPAVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGLYGLQGGGIG 434
Query: 811 ELLGVMDQVAIINSTLGKALXXXXXXXXXXXXXLVSLLRQRARPYLFSNSLPPAVVGCAS 990
+ GVM ++ II+ TLGKA+ L+ +R A ++F+ SLPP ++ A
Sbjct: 435 DRDGVMPKMDIISGTLGKAI-GCVGGYIASTSSLIDTVRSYAAGFIFTTSLPPMLLAGAL 493
Query: 991 KALDLL--MENNAIVQSMAAKTQRFRRKMEAAGFTISGGHHPICPVMLGDARLASCMAND 1164
+++ +L E + + + R+ + AG + I PV + DA + + ++
Sbjct: 494 ESVRILRSTEGRTLRRQHQRNVKLMRQMLMDAGLPVVHCPSHIIPVRVADAAKNTEVCDE 553
Query: 1165 -MAKRGIFVIGFSYPVVPR 1218
M + I+V +YP VPR
Sbjct: 554 LMTRHNIYVQAINYPTVPR 572
>ref|NP_001092551.1| serine palmitoyltransferase 2 [Bos taurus].
Length = 562
Score = 138 bits (348), Expect = 9e-33
Identities = 99/334 (29%), Positives = 161/334 (48%), Gaps = 18/334 (5%)
Frame = +1
Query: 268 IINFCANNYLGLSSHPEVIQ-AGLQALEEFGAGLSSVRFICGTQSIHKDLEAKIARFHQR 444
+IN + NYLG + + Q A + LEE+G G+ S R G H++LE +A F
Sbjct: 170 VINMGSYNYLGFARNTGPCQEAAAKVLEEYGVGVCSTRQEIGNLDKHEELEKLVANFLGV 229
Query: 445 EDAILYPSCFDANAGLFEALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDVADLE 624
E A+ Y F N+ AL++ +LSDELNHAS++ G RL A ++H ++ LE
Sbjct: 230 EAAMAYGMGFATNSMNIPALVSKGCLILSDELNHASLVLGARLSGATIRVFKHNNMQSLE 289
Query: 625 AKLQEA---------QKHRLRLVATDGTFSMDGDIAPLQDICRLASQYGALVFVDDCHAT 777
L++A + + L+ +G +SM+G I L ++ L +Y A +++D+ H+
Sbjct: 290 KLLKDAIVYGQPRTRRPWKKILILVEGIYSMEGSIVRLPEVIALKKKYKAYLYLDEAHSI 349
Query: 778 GFLGATGRGTDELLGV-MDQVAIINSTLGKALXXXXXXXXXXXXXLVSLLRQRARPYLFS 954
G LG TGRG + G+ + V I+ T K+ L+ LR + +++
Sbjct: 350 GALGPTGRGVVDYFGLDPEDVDIMMGTFTKSF-GASGGYIGGKKALIDYLRTHSHSAVYA 408
Query: 955 NSLPPAVVGCASKALDLLMENNA------IVQSMAAKTQRFRRKMEAAGFTISGGH-HPI 1113
SL P V A+ +M + +Q +A + FRR++++ GF I G P+
Sbjct: 409 ASLSPPVAEQIITAMKCIMGQDGTTLGKECIQQLAENVRYFRRRLKSMGFIIYGNEDSPV 468
Query: 1114 CPVMLGDARLASCMANDMAKRGIFVIGFSYPVVP 1215
P+ML +M KR I V+ +P P
Sbjct: 469 VPLMLYMPAKIGAFGREMLKRNIGVVVVGFPATP 502
>ref|XP_002692086.1| PREDICTED: serine palmitoyltransferase, long chain base subunit
2-like [Bos taurus].
Length = 549
Score = 137 bits (346), Expect = 1e-32
Identities = 99/336 (29%), Positives = 163/336 (48%), Gaps = 18/336 (5%)
Frame = +1
Query: 268 IINFCANNYLGLSS-HPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKDLEAKIARFHQR 444
+IN + N+LGL++ + E ++ + +E +G G+ S R GT HK+LE +A+F
Sbjct: 159 VINMGSYNFLGLAAKYDESMRTVKEVIETYGLGVGSTRQEMGTLDKHKELEDLVAKFLNV 218
Query: 445 EDAILYPSCFDANAGLFEALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDVADLE 624
E A+++ F N+ AL+ +LSDELNHAS++ G RL A ++H +V LE
Sbjct: 219 EAAMVFGMGFATNSMNIPALVGKGCLILSDELNHASLVLGARLSGATIRIFKHNNVQSLE 278
Query: 625 AKLQEA---------QKHRLRLVATDGTFSMDGDIAPLQDICRLASQYGALVFVDDCHAT 777
L++A + R L+ +G +SM+G I L DI L +Y A +++D+ H+
Sbjct: 279 KLLRDAVIYGQPRTRRAWRKILILVEGIYSMEGSIVHLPDIVALKKKYKAYLYMDEAHSI 338
Query: 778 GFLGATGRGTDELLGVMDQ-VAIINSTLGKALXXXXXXXXXXXXXLVSLLRQRARPYLFS 954
G +G TGRG E G+ + + + T K+ LV LR + +
Sbjct: 339 GSVGPTGRGVVEFFGLDPRDIDVYMGTFTKSF-GAAGGYIAGRKDLVDYLRTHSHSAAYG 397
Query: 955 NSLPPAVVGCASKALDLLM------ENNAIVQSMAAKTQRFRRKMEAAGFTISGGHH-PI 1113
S+ P V + + L+M E VQ +A T+ FR+++ GF + G P+
Sbjct: 398 TSMSPPVAEQIIRVMKLIMGLDGTTEGLQRVQQLAKNTRYFRQRLSKMGFIVYGNEESPV 457
Query: 1114 CPVMLGDARLASCMANDMAKRGIFVIGFSYPVVPRA 1221
P++L + A + R I V+ +P P A
Sbjct: 458 VPLLLYMPAKVAAFARHLLNRKIGVVVVGFPATPLA 493
>ref|XP_602826.3| PREDICTED: serine palmitoyltransferase, long chain base subunit 2
[Bos taurus].
Length = 469
Score = 129 bits (325), Expect = 4e-30
Identities = 92/305 (30%), Positives = 152/305 (49%), Gaps = 18/305 (5%)
Frame = +1
Query: 268 IINFCANNYLGLSS-HPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKDLEAKIARFHQR 444
+IN + N+LGL++ + E ++ + +E +G G+ S R GT HK+LE +A+F
Sbjct: 159 VINMGSYNFLGLAAKYDESMRTVKEVIETYGLGVGSTRQEMGTLDKHKELEDLVAKFLNV 218
Query: 445 EDAILYPSCFDANAGLFEALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDVADLE 624
E A+++ F N+ AL+ +LSDELNHAS++ G RL A ++H +V LE
Sbjct: 219 EAAMVFGMGFATNSMNIPALVGKGCLILSDELNHASLVLGARLSGATIRIFKHNNVQSLE 278
Query: 625 AKLQEA---------QKHRLRLVATDGTFSMDGDIAPLQDICRLASQYGALVFVDDCHAT 777
L++A + R L+ +G +SM+G I L DI L +Y A +++D+ H+
Sbjct: 279 KLLRDAVIYGQPRTRRAWRKILILVEGIYSMEGSIVHLPDIVALKKKYKAYLYMDEAHSI 338
Query: 778 GFLGATGRGTDELLGVMDQ-VAIINSTLGKALXXXXXXXXXXXXXLVSLLRQRARPYLFS 954
G +G TGRG E G+ + + + T K+ LV LR + +
Sbjct: 339 GSVGPTGRGVVEFFGLDPRDIDVYMGTFTKSF-GAAGGYIAGRKDLVDYLRTHSHSAAYG 397
Query: 955 NSLPPAVVGCASKALDLLM------ENNAIVQSMAAKTQRFRRKMEAAGFTISGGHH-PI 1113
S+ P V + + L+M E VQ +A T+ FR+++ GF + G P+
Sbjct: 398 TSMSPPVAEQIIRVMKLIMGLDGTTEGLQRVQQLAKNTRYFRQRLSKMGFIVYGNEESPV 457
Query: 1114 CPVML 1128
P++L
Sbjct: 458 VPLLL 462
>ref|NP_001029921.1| serine palmitoyltransferase 1 [Bos taurus].
Length = 473
Score = 121 bits (303), Expect = 1e-27
Identities = 84/293 (28%), Positives = 145/293 (49%), Gaps = 12/293 (4%)
Frame = +1
Query: 232 GPRIHVDGVSGG-IINFCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHK 408
GP H V+G INF + N+LGL +P + A L +L+++G G R GT +H
Sbjct: 87 GPPSHNIVVNGKECINFASFNFLGLLDNPRLKAAALASLKKYGVGTCGPRGFYGTFDVHL 146
Query: 409 DLEAKIARFHQREDAILYPSCFDANAGLFEALLTPEDAVLSDELNHASIIDGIRLCKAHK 588
DLE ++A+F + E+AI+Y F A A D V D+ +I G++ ++
Sbjct: 147 DLEDRLAKFMKTEEAIIYSYGFATIASAIPAYSKRGDIVFVDKAACFAIQKGLQASRSDI 206
Query: 589 YRYRHLDVADLEAKLQEAQ--------KHRL--RLVATDGTFSMDGDIAPLQDICRLASQ 738
+ H D+ DLE L+E + K R+ R + +G + G + PL ++ +L +
Sbjct: 207 KVFNHNDMDDLERLLKEQEIEDQKNPRKARVTRRFIIVEGLYMNTGTVCPLPELVKLKYK 266
Query: 739 YGALVFVDDCHATGFLGATGRGTDELLGV-MDQVAIINSTLGKALXXXXXXXXXXXXXLV 915
Y A +F+++ + G LG GRG E G+ +D + +I++ + +L ++
Sbjct: 267 YKARIFLEESLSFGVLGEHGRGVTEHFGISIDDIDLISANMENSL-ASIGGFCCGRSFVI 325
Query: 916 SLLRQRARPYLFSNSLPPAVVGCASKALDLLMENNAIVQSMAAKTQRFRRKME 1074
R + Y FS SLPP + A +AL+++ EN I + K +R + ++
Sbjct: 326 DHQRLSGQGYCFSASLPPLLAAAAIEALNIMEENPGIFAVLKEKCKRIHKALQ 378
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 50,906,452
Number of extensions: 1647601
Number of successful extensions: 7685
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 7630
Number of HSP's successfully gapped: 7
Length of query: 407
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 302
Effective length of database: 14,207,134
Effective search space: 4290554468
Effective search space used: 4290554468
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014032
(1221 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126086.1| PREDICTED: 2-amino-3-ketobutyrate coenzyme A... 691 0.0
Alignment gi|XP_003126081.1| PREDICTED: 2-amino-3-ketobutyrate coenzyme A... 691 0.0
Alignment gi|XP_003360387.1| PREDICTED: 5-aminolevulinate synthase, eryth... 199 2e-51
Alignment gi|XP_003360386.1| PREDICTED: 5-aminolevulinate synthase, eryth... 199 2e-51
Alignment gi|XP_003360385.1| PREDICTED: 5-aminolevulinate synthase, eryth... 199 2e-51
Alignment gi|XP_003132298.1| PREDICTED: 5-aminolevulinate synthase, nonsp... 188 6e-48
Alignment gi|XP_001926625.3| PREDICTED: serine palmitoyltransferase 2, pa... 140 1e-33
Alignment gi|XP_003134305.1| PREDICTED: serine palmitoyltransferase 3 [Su... 134 1e-31
>ref|XP_003126086.1| PREDICTED: 2-amino-3-ketobutyrate coenzyme A ligase,
mitochondrial-like isoform 1 [Sus scrofa].
Length = 419
Score = 691 bits (1783), Expect = 0.0
Identities = 351/383 (91%), Positives = 354/383 (92%)
Frame = +1
Query: 70 MWAGRILCAALSRAPRGCRPQSALAQXXXXXXXXXXXXXXAGTWKSERVITSRQGPRIHV 249
MWAGRILCAALSRAPRGCRPQSALAQ AGTWKSERVITSRQGPRIHV
Sbjct: 1 MWAGRILCAALSRAPRGCRPQSALAQLRGILEEELEGIREAGTWKSERVITSRQGPRIHV 60
Query: 250 DGVSGGIINFCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKDLEAKIA 429
DGVSGGIINFCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKDLEAKIA
Sbjct: 61 DGVSGGIINFCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKDLEAKIA 120
Query: 430 RFHQREDAILYPSCFDANAGLFEALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLD 609
RFHQREDAILYPSCFDANAGLFEALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLD
Sbjct: 121 RFHQREDAILYPSCFDANAGLFEALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLD 180
Query: 610 VADLEAKLQEAQKHRLRLVATDGTFSMDGDIAPLQDICRLASQYGALVFVDDCHATGFLG 789
VADLEAKLQEAQKHRLRLVATDGTFSMDGDIAPLQDICRLASQYGALVFVDDCHATGFLG
Sbjct: 181 VADLEAKLQEAQKHRLRLVATDGTFSMDGDIAPLQDICRLASQYGALVFVDDCHATGFLG 240
Query: 790 ATGRGTDELLGVMDQVAIINSTLGKALXXXXXXXXXXXXXLVSLLRQRARPYLFSNSLPP 969
ATGRGTDELLGVMDQVAIINSTLGKAL LVSLLRQRARPYLFSNSLPP
Sbjct: 241 ATGRGTDELLGVMDQVAIINSTLGKALGGASGGYTTGPGSLVSLLRQRARPYLFSNSLPP 300
Query: 970 AVVGCASKALDLLMENNAIVQSMAAKTQRFRRKMEAAGFTISGGHHPICPVMLGDARLAS 1149
AVVGCASKALDLLMENNAIVQSMAAKTQRFRRKMEAAGFTISG +HPICPVMLGDARLAS
Sbjct: 301 AVVGCASKALDLLMENNAIVQSMAAKTQRFRRKMEAAGFTISGANHPICPVMLGDARLAS 360
Query: 1150 CMANDMAKRGIFVIGFSYPVVPR 1218
CMA+DM KRGIFVIGFSYPVVP+
Sbjct: 361 CMADDMQKRGIFVIGFSYPVVPK 383
>ref|XP_003126081.1| PREDICTED: 2-amino-3-ketobutyrate coenzyme A ligase,
mitochondrial-like isoform 1 [Sus scrofa].
Length = 419
Score = 691 bits (1783), Expect = 0.0
Identities = 351/383 (91%), Positives = 354/383 (92%)
Frame = +1
Query: 70 MWAGRILCAALSRAPRGCRPQSALAQXXXXXXXXXXXXXXAGTWKSERVITSRQGPRIHV 249
MWAGRILCAALSRAPRGCRPQSALAQ AGTWKSERVITSRQGPRIHV
Sbjct: 1 MWAGRILCAALSRAPRGCRPQSALAQLRGILEEELEGIREAGTWKSERVITSRQGPRIHV 60
Query: 250 DGVSGGIINFCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKDLEAKIA 429
DGVSGGIINFCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKDLEAKIA
Sbjct: 61 DGVSGGIINFCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKDLEAKIA 120
Query: 430 RFHQREDAILYPSCFDANAGLFEALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLD 609
RFHQREDAILYPSCFDANAGLFEALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLD
Sbjct: 121 RFHQREDAILYPSCFDANAGLFEALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLD 180
Query: 610 VADLEAKLQEAQKHRLRLVATDGTFSMDGDIAPLQDICRLASQYGALVFVDDCHATGFLG 789
VADLEAKLQEAQKHRLRLVATDGTFSMDGDIAPLQDICRLASQYGALVFVDDCHATGFLG
Sbjct: 181 VADLEAKLQEAQKHRLRLVATDGTFSMDGDIAPLQDICRLASQYGALVFVDDCHATGFLG 240
Query: 790 ATGRGTDELLGVMDQVAIINSTLGKALXXXXXXXXXXXXXLVSLLRQRARPYLFSNSLPP 969
ATGRGTDELLGVMDQVAIINSTLGKAL LVSLLRQRARPYLFSNSLPP
Sbjct: 241 ATGRGTDELLGVMDQVAIINSTLGKALGGASGGYTTGPGSLVSLLRQRARPYLFSNSLPP 300
Query: 970 AVVGCASKALDLLMENNAIVQSMAAKTQRFRRKMEAAGFTISGGHHPICPVMLGDARLAS 1149
AVVGCASKALDLLMENNAIVQSMAAKTQRFRRKMEAAGFTISG +HPICPVMLGDARLAS
Sbjct: 301 AVVGCASKALDLLMENNAIVQSMAAKTQRFRRKMEAAGFTISGANHPICPVMLGDARLAS 360
Query: 1150 CMANDMAKRGIFVIGFSYPVVPR 1218
CMA+DM KRGIFVIGFSYPVVP+
Sbjct: 361 CMADDMQKRGIFVIGFSYPVVPK 383
>ref|XP_003360387.1| PREDICTED: 5-aminolevulinate synthase, erythroid-specific,
mitochondrial-like isoform 3 [Sus scrofa].
Length = 550
Score = 199 bits (507), Expect = 2e-51
Identities = 119/319 (37%), Positives = 182/319 (57%), Gaps = 5/319 (1%)
Frame = +1
Query: 277 FCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKDLEAKIARFHQREDAI 456
+C+N+YLG+S HP V+QA + L+ GAG R I GT H ++E ++A HQ++ A+
Sbjct: 157 WCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSAL 216
Query: 457 LYPSCFDAN-AGLFE-ALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDVADLEAK 630
L+ SCF AN + LF A + P + SD NHAS+I GIR A K+ +RH D L+
Sbjct: 217 LFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKL 276
Query: 631 LQEAQKHRLRLVATDGTFSMDGDIAPLQDICRLASQYGALVFVDDCHATGFLGATGRGTD 810
L+++ ++VA + SMDG I PL+++C +A QYGAL FVD+ HA G G+ G G
Sbjct: 277 LEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIG 336
Query: 811 ELLGVMDQVAIINSTLGKALXXXXXXXXXXXXXLVSLLRQRARPYLFSNSLPPAVVGCAS 990
E G+M ++ II+ TLGKA LV ++R A ++F+ SLPP V+ A
Sbjct: 337 ERDGIMHKIDIISGTLGKAF-GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGAL 395
Query: 991 KALDLLM--ENNAIVQSMAAKTQRFRRKMEAAGFTISGGHHPICPVMLGDARLASCMAN- 1161
+++ LL E A+ ++ + R+ + G + I P+ +G+A L S + +
Sbjct: 396 ESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSRICDL 455
Query: 1162 DMAKRGIFVIGFSYPVVPR 1218
++K GI+V +YP VPR
Sbjct: 456 LLSKHGIYVQAINYPTVPR 474
>ref|XP_003360386.1| PREDICTED: 5-aminolevulinate synthase, erythroid-specific,
mitochondrial-like isoform 2 [Sus scrofa].
Length = 550
Score = 199 bits (507), Expect = 2e-51
Identities = 119/319 (37%), Positives = 182/319 (57%), Gaps = 5/319 (1%)
Frame = +1
Query: 277 FCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKDLEAKIARFHQREDAI 456
+C+N+YLG+S HP V+QA + L+ GAG R I GT H ++E ++A HQ++ A+
Sbjct: 157 WCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSAL 216
Query: 457 LYPSCFDAN-AGLFE-ALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDVADLEAK 630
L+ SCF AN + LF A + P + SD NHAS+I GIR A K+ +RH D L+
Sbjct: 217 LFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKL 276
Query: 631 LQEAQKHRLRLVATDGTFSMDGDIAPLQDICRLASQYGALVFVDDCHATGFLGATGRGTD 810
L+++ ++VA + SMDG I PL+++C +A QYGAL FVD+ HA G G+ G G
Sbjct: 277 LEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIG 336
Query: 811 ELLGVMDQVAIINSTLGKALXXXXXXXXXXXXXLVSLLRQRARPYLFSNSLPPAVVGCAS 990
E G+M ++ II+ TLGKA LV ++R A ++F+ SLPP V+ A
Sbjct: 337 ERDGIMHKIDIISGTLGKAF-GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGAL 395
Query: 991 KALDLLM--ENNAIVQSMAAKTQRFRRKMEAAGFTISGGHHPICPVMLGDARLASCMAN- 1161
+++ LL E A+ ++ + R+ + G + I P+ +G+A L S + +
Sbjct: 396 ESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSRICDL 455
Query: 1162 DMAKRGIFVIGFSYPVVPR 1218
++K GI+V +YP VPR
Sbjct: 456 LLSKHGIYVQAINYPTVPR 474
>ref|XP_003360385.1| PREDICTED: 5-aminolevulinate synthase, erythroid-specific,
mitochondrial-like isoform 1 [Sus scrofa].
Length = 587
Score = 199 bits (507), Expect = 2e-51
Identities = 119/319 (37%), Positives = 182/319 (57%), Gaps = 5/319 (1%)
Frame = +1
Query: 277 FCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKDLEAKIARFHQREDAI 456
+C+N+YLG+S HP V+QA + L+ GAG R I GT H ++E ++A HQ++ A+
Sbjct: 194 WCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSAL 253
Query: 457 LYPSCFDAN-AGLFE-ALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDVADLEAK 630
L+ SCF AN + LF A + P + SD NHAS+I GIR A K+ +RH D L+
Sbjct: 254 LFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKL 313
Query: 631 LQEAQKHRLRLVATDGTFSMDGDIAPLQDICRLASQYGALVFVDDCHATGFLGATGRGTD 810
L+++ ++VA + SMDG I PL+++C +A QYGAL FVD+ HA G G+ G G
Sbjct: 314 LEKSNPVTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIG 373
Query: 811 ELLGVMDQVAIINSTLGKALXXXXXXXXXXXXXLVSLLRQRARPYLFSNSLPPAVVGCAS 990
E G+M ++ II+ TLGKA LV ++R A ++F+ SLPP V+ A
Sbjct: 374 ERDGIMHKIDIISGTLGKAF-GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGAL 432
Query: 991 KALDLLM--ENNAIVQSMAAKTQRFRRKMEAAGFTISGGHHPICPVMLGDARLASCMAN- 1161
+++ LL E A+ ++ + R+ + G + I P+ +G+A L S + +
Sbjct: 433 ESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSRICDL 492
Query: 1162 DMAKRGIFVIGFSYPVVPR 1218
++K GI+V +YP VPR
Sbjct: 493 LLSKHGIYVQAINYPTVPR 511
>ref|XP_003132298.1| PREDICTED: 5-aminolevulinate synthase, nonspecific,
mitochondrial-like isoform 1 [Sus scrofa].
Length = 526
Score = 188 bits (477), Expect = 6e-48
Identities = 115/319 (36%), Positives = 175/319 (54%), Gaps = 5/319 (1%)
Frame = +1
Query: 277 FCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKDLEAKIARFHQREDAI 456
+C+N+YLG+S HP V A + L+++G G R I GT H DLE ++A H ++ A+
Sbjct: 134 WCSNDYLGMSRHPRVCGAVIDTLKQYGTGAGGTRNISGTSKFHVDLEQELADLHGKDAAL 193
Query: 457 LYPSCFDAN-AGLFE-ALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDVADLEAK 630
L+ SCF AN + LF A + P + SD NHAS+I GIR KY +RH DV L
Sbjct: 194 LFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNSGVPKYIFRHNDVHHLREL 253
Query: 631 LQEAQKHRLRLVATDGTFSMDGDIAPLQDICRLASQYGALVFVDDCHATGFLGATGRGTD 810
LQ + ++VA + SMDG + PL+++C +A ++GA+ FVD+ HA G GA G G
Sbjct: 254 LQRSDPAVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGLYGAQGGGIG 313
Query: 811 ELLGVMDQVAIINSTLGKALXXXXXXXXXXXXXLVSLLRQRARPYLFSNSLPPAVVGCAS 990
+ GVM ++ II+ TLGKA LV +R A ++F+ SLPP V+ A
Sbjct: 314 DRDGVMPKMDIISGTLGKAF-GCVGGYIASTNSLVDTIRSYAAGFIFTTSLPPMVLAGAL 372
Query: 991 KALDLL--MENNAIVQSMAAKTQRFRRKMEAAGFTISGGHHPICPVMLGDARLASCMAND 1164
+++ +L E A+ + + R+ + AG + I PV + DA + + ++
Sbjct: 373 ESVRILKSAEGRALRRQHQRNVKLMRQMLMDAGLPVIHCPSHIIPVRVSDAAKNTEICDE 432
Query: 1165 -MAKRGIFVIGFSYPVVPR 1218
M++ I+V +YP VPR
Sbjct: 433 LMSRYNIYVQAINYPTVPR 451
>ref|XP_001926625.3| PREDICTED: serine palmitoyltransferase 2, partial [Sus scrofa].
Length = 463
Score = 140 bits (354), Expect = 1e-33
Identities = 99/334 (29%), Positives = 162/334 (48%), Gaps = 18/334 (5%)
Frame = +1
Query: 268 IINFCANNYLGLSSHPEVIQ-AGLQALEEFGAGLSSVRFICGTQSIHKDLEAKIARFHQR 444
+IN + NYLG + + Q A + LEE+G G+ S R G H++LE +A F
Sbjct: 71 VINMGSYNYLGFARNTGACQEAAAKVLEEYGVGVCSTRQEIGNLDKHEELEKLVASFLGV 130
Query: 445 EDAILYPSCFDANAGLFEALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDVADLE 624
E A+ Y F N+ AL++ +LSDELNHAS++ G RL A ++H ++ LE
Sbjct: 131 EAAMAYGMGFATNSMNIPALVSKGCLILSDELNHASLVLGARLSGATIRIFKHNNMQSLE 190
Query: 625 AKLQEA---------QKHRLRLVATDGTFSMDGDIAPLQDICRLASQYGALVFVDDCHAT 777
L++A + + L+ +G +SM+G I L ++ L +Y A +++D+ H+
Sbjct: 191 KLLKDAIVYGQPRTRRPWKKILILVEGIYSMEGSIVRLPEVIALKKKYKAYLYLDEAHSI 250
Query: 778 GFLGATGRGTDELLGV-MDQVAIINSTLGKALXXXXXXXXXXXXXLVSLLRQRARPYLFS 954
G LG TGRG + G+ + V I+ T K+ L+ LR + +++
Sbjct: 251 GALGPTGRGVVDYFGLDPEDVDIMMGTFTKSF-GASGGYIGGKKELIDYLRTHSHSAVYA 309
Query: 955 NSLPPAVVGCASKALDLLMENNA------IVQSMAAKTQRFRRKMEAAGFTISGGH-HPI 1113
SL P VV ++ +M + +Q +A T+ FRR+++ GF I G P+
Sbjct: 310 TSLSPPVVEQIITSMKCIMGQDGTTLGKECIQQLAENTRYFRRRLKEMGFIIYGNEDSPV 369
Query: 1114 CPVMLGDARLASCMANDMAKRGIFVIGFSYPVVP 1215
P+ML +M KR + V+ +P P
Sbjct: 370 VPLMLYMPAKIGAFGREMLKRNVGVVVVGFPATP 403
>ref|XP_003134305.1| PREDICTED: serine palmitoyltransferase 3 [Sus scrofa].
Length = 548
Score = 134 bits (336), Expect = 1e-31
Identities = 104/340 (30%), Positives = 165/340 (48%), Gaps = 22/340 (6%)
Frame = +1
Query: 268 IINFCANNYLGLSS-HPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKDLEAKIARFHQR 444
+IN + N+LGL++ + E ++ LE +G G+ S R GT HK+LE +A+F
Sbjct: 157 VINMGSYNFLGLAAKYDESMRTVKDVLETYGIGVGSTRQEMGTLDKHKELEDLVAKFLNV 216
Query: 445 EDAILYPSCFDANAGLFEALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDVADLE 624
E A+++ F N+ AL+ +LSDELNHAS++ G RL A ++H +V LE
Sbjct: 217 EAAMVFGMGFATNSMNIPALVGKGCLILSDELNHASLVLGARLSGATIRIFKHNNVQSLE 276
Query: 625 AKLQEA---------QKHRLRLVATDGTFSMDGDIAPLQDICRLASQYGALVFVDDCHAT 777
L++A + + L+ +G +SM+G I L I L +Y A +++D+ H+
Sbjct: 277 KLLRDAIIYGQPRTRRAWKKILILVEGIYSMEGSIVYLPQIVALKKKYKAYLYIDEAHSI 336
Query: 778 GFLGATGRGTDELLGVMD--QVAIINSTLGKALXXXXXXXXXXXXXLVSLLRQRARPYLF 951
G LG TGRG E G MD V + T K+ LV LR + +
Sbjct: 337 GSLGPTGRGVVEFFG-MDPRDVDVCMGTFTKSF-GASGGYLAGRKDLVDYLRAHSHSAAY 394
Query: 952 SNSLPPAVVGCASKALDLLM------ENNAIVQSMAAKTQRFRRKMEAAGFTISGGH-HP 1110
+ S+ P V +++ L+M + VQ +A T+ FR+++ GF I G P
Sbjct: 395 ATSMSPPVAEQIIRSMKLIMGLDGTTQGLQRVQQLAKNTRYFRQRLSQLGFIIYGNEASP 454
Query: 1111 ICPVMLGDARLASCMANDMAKR---GIFVIGFSYPVVPRA 1221
+ P++L + A + R G+ V+GF P P A
Sbjct: 455 VVPLLLYMPAKVAAFARHLLNRYKIGVVVVGF--PATPLA 492
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,950,239
Number of extensions: 1070981
Number of successful extensions: 5248
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 5158
Number of HSP's successfully gapped: 8
Length of query: 407
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 306
Effective length of database: 8,829,335
Effective search space: 2701776510
Effective search space used: 2701776510
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014032
(1221 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038875.3| 2-amino-3-ketobutyrate coenzyme A ligase, mitoc... 610 e-175
Alignment gi|NP_001155184.1| 2-amino-3-ketobutyrate coenzyme A ligase, mi... 585 e-167
Alignment gi|NP_001095916.1| 5-aminolevulinate synthase, erythroid-specif... 202 6e-52
Alignment gi|NP_033783.1| 5-aminolevulinate synthase, erythroid-specific,... 202 6e-52
Alignment gi|NP_065584.2| 5-aminolevulinate synthase, nonspecific, mitoch... 186 4e-47
Alignment gi|NP_035609.1| serine palmitoyltransferase 2 [Mus musculus]. 140 2e-33
Alignment gi|NP_780676.1| serine palmitoyltransferase 3 [Mus musculus]. 130 2e-30
Alignment gi|NP_033295.2| serine palmitoyltransferase 1 [Mus musculus]. 126 3e-29
>ref|NP_038875.3| 2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial isoform a
[Mus musculus].
Length = 416
Score = 610 bits (1573), Expect = e-175
Identities = 313/383 (81%), Positives = 330/383 (86%)
Frame = +1
Query: 70 MWAGRILCAALSRAPRGCRPQSALAQXXXXXXXXXXXXXXAGTWKSERVITSRQGPRIHV 249
MWA + ALS G R SALAQ AGTWKSERVITSRQGP I V
Sbjct: 1 MWASFMWHGALSP---GRRAHSALAQLRCILDSELEGIRGAGTWKSERVITSRQGPSIRV 57
Query: 250 DGVSGGIINFCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKDLEAKIA 429
DG+SGGI+NFCANNYLGLSSHP VIQAGLQ LEEFGAGLSS RFICGTQSIHK+LEAKIA
Sbjct: 58 DGISGGILNFCANNYLGLSSHPAVIQAGLQTLEEFGAGLSSTRFICGTQSIHKNLEAKIA 117
Query: 430 RFHQREDAILYPSCFDANAGLFEALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLD 609
FHQREDAILYPSCFDANAGLFEALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLD
Sbjct: 118 HFHQREDAILYPSCFDANAGLFEALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLD 177
Query: 610 VADLEAKLQEAQKHRLRLVATDGTFSMDGDIAPLQDICRLASQYGALVFVDDCHATGFLG 789
+ADLEAKL+EAQKHRLRLVATDG FSMDGDIAPLQDICRLA+QYGALVFVD+CHATGFLG
Sbjct: 178 MADLEAKLKEAQKHRLRLVATDGAFSMDGDIAPLQDICRLAAQYGALVFVDECHATGFLG 237
Query: 790 ATGRGTDELLGVMDQVAIINSTLGKALXXXXXXXXXXXXXLVSLLRQRARPYLFSNSLPP 969
TGRGTDELLGVMDQV IINSTLGKAL LVSLLRQR+RPYLFSNSLPP
Sbjct: 238 PTGRGTDELLGVMDQVTIINSTLGKALGGASGGYTTGPEPLVSLLRQRSRPYLFSNSLPP 297
Query: 970 AVVGCASKALDLLMENNAIVQSMAAKTQRFRRKMEAAGFTISGGHHPICPVMLGDARLAS 1149
AVVGCASKALDLLME+NAI+QSMAAKT+RFR KMEAAGFT+SG HPICPVMLGDARL+S
Sbjct: 298 AVVGCASKALDLLMESNAIIQSMAAKTRRFRSKMEAAGFTVSGADHPICPVMLGDARLSS 357
Query: 1150 CMANDMAKRGIFVIGFSYPVVPR 1218
MA+DM K+GIFVIGFSYPVVP+
Sbjct: 358 QMADDMLKKGIFVIGFSYPVVPK 380
>ref|NP_001155184.1| 2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial isoform b
[Mus musculus].
Length = 382
Score = 585 bits (1508), Expect = e-167
Identities = 301/370 (81%), Positives = 317/370 (85%)
Frame = +1
Query: 70 MWAGRILCAALSRAPRGCRPQSALAQXXXXXXXXXXXXXXAGTWKSERVITSRQGPRIHV 249
MWA + ALS G R SALAQ AGTWKSERVITSRQGP I V
Sbjct: 1 MWASFMWHGALSP---GRRAHSALAQLRCILDSELEGIRGAGTWKSERVITSRQGPSIRV 57
Query: 250 DGVSGGIINFCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKDLEAKIA 429
DG+SGGI+NFCANNYLGLSSHP VIQAGLQ LEEFGAGLSS RFICGTQSIHK+LEAKIA
Sbjct: 58 DGISGGILNFCANNYLGLSSHPAVIQAGLQTLEEFGAGLSSTRFICGTQSIHKNLEAKIA 117
Query: 430 RFHQREDAILYPSCFDANAGLFEALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLD 609
FHQREDAILYPSCFDANAGLFEALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLD
Sbjct: 118 HFHQREDAILYPSCFDANAGLFEALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLD 177
Query: 610 VADLEAKLQEAQKHRLRLVATDGTFSMDGDIAPLQDICRLASQYGALVFVDDCHATGFLG 789
+ADLEAKL+EAQKHRLRLVATDG FSMDGDIAPLQDICRLA+QYGALVFVD+CHATGFLG
Sbjct: 178 MADLEAKLKEAQKHRLRLVATDGAFSMDGDIAPLQDICRLAAQYGALVFVDECHATGFLG 237
Query: 790 ATGRGTDELLGVMDQVAIINSTLGKALXXXXXXXXXXXXXLVSLLRQRARPYLFSNSLPP 969
TGRGTDELLGVMDQV IINSTLGKAL LVSLLRQR+RPYLFSNSLPP
Sbjct: 238 PTGRGTDELLGVMDQVTIINSTLGKALGGASGGYTTGPEPLVSLLRQRSRPYLFSNSLPP 297
Query: 970 AVVGCASKALDLLMENNAIVQSMAAKTQRFRRKMEAAGFTISGGHHPICPVMLGDARLAS 1149
AVVGCASKALDLLME+NAI+QSMAAKT+RFR KMEAAGFT+SG HPICPVMLGDARL+S
Sbjct: 298 AVVGCASKALDLLMESNAIIQSMAAKTRRFRSKMEAAGFTVSGADHPICPVMLGDARLSS 357
Query: 1150 CMANDMAKRG 1179
MA+DM K+G
Sbjct: 358 QMADDMLKKG 367
>ref|NP_001095916.1| 5-aminolevulinate synthase, erythroid-specific, mitochondrial isoform
b [Mus musculus].
Length = 572
Score = 202 bits (513), Expect = 6e-52
Identities = 122/319 (38%), Positives = 182/319 (57%), Gaps = 5/319 (1%)
Frame = +1
Query: 277 FCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKDLEAKIARFHQREDAI 456
+C+N+YLG+S HP V+QA + L+ GAG R I GT H +LE ++A HQ++ A+
Sbjct: 179 WCSNDYLGISRHPRVLQAIEETLKNHGAGAGGTRNISGTSKFHVELEQELAELHQKDSAL 238
Query: 457 LYPSCFDAN-AGLFE-ALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDVADLEAK 630
L+ SCF AN + LF A L P + SD NHAS+I GIR A K+ +RH D L+
Sbjct: 239 LFSSCFVANDSTLFTLAKLLPGCEIYSDAGNHASMIQGIRNSGAAKFVFRHNDPGHLKKL 298
Query: 631 LQEAQKHRLRLVATDGTFSMDGDIAPLQDICRLASQYGALVFVDDCHATGFLGATGRGTD 810
L+++ ++VA + SMDG I PL+++C +A QYGAL FVD+ HA G GA G G
Sbjct: 299 LEKSDPKTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVHAVGLYGARGAGIG 358
Query: 811 ELLGVMDQVAIINSTLGKALXXXXXXXXXXXXXLVSLLRQRARPYLFSNSLPPAVVGCAS 990
E G+M ++ II+ TLGKA LV ++R A ++F+ SLPP V+ A
Sbjct: 359 ERDGIMHKLDIISGTLGKAF-GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGAL 417
Query: 991 KALDLLM--ENNAIVQSMAAKTQRFRRKMEAAGFTISGGHHPICPVMLGDARLASCMAN- 1161
+++ LL E A+ ++ + R+ + GF + I P+ +G+A L S + +
Sbjct: 418 ESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGFPVIPCPSHIIPIRVGNAALNSKICDL 477
Query: 1162 DMAKRGIFVIGFSYPVVPR 1218
++K I+V +YP VPR
Sbjct: 478 LLSKHSIYVQAINYPTVPR 496
>ref|NP_033783.1| 5-aminolevulinate synthase, erythroid-specific, mitochondrial isoform
a [Mus musculus].
Length = 587
Score = 202 bits (513), Expect = 6e-52
Identities = 122/319 (38%), Positives = 182/319 (57%), Gaps = 5/319 (1%)
Frame = +1
Query: 277 FCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKDLEAKIARFHQREDAI 456
+C+N+YLG+S HP V+QA + L+ GAG R I GT H +LE ++A HQ++ A+
Sbjct: 194 WCSNDYLGISRHPRVLQAIEETLKNHGAGAGGTRNISGTSKFHVELEQELAELHQKDSAL 253
Query: 457 LYPSCFDAN-AGLFE-ALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDVADLEAK 630
L+ SCF AN + LF A L P + SD NHAS+I GIR A K+ +RH D L+
Sbjct: 254 LFSSCFVANDSTLFTLAKLLPGCEIYSDAGNHASMIQGIRNSGAAKFVFRHNDPGHLKKL 313
Query: 631 LQEAQKHRLRLVATDGTFSMDGDIAPLQDICRLASQYGALVFVDDCHATGFLGATGRGTD 810
L+++ ++VA + SMDG I PL+++C +A QYGAL FVD+ HA G GA G G
Sbjct: 314 LEKSDPKTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVHAVGLYGARGAGIG 373
Query: 811 ELLGVMDQVAIINSTLGKALXXXXXXXXXXXXXLVSLLRQRARPYLFSNSLPPAVVGCAS 990
E G+M ++ II+ TLGKA LV ++R A ++F+ SLPP V+ A
Sbjct: 374 ERDGIMHKLDIISGTLGKAF-GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGAL 432
Query: 991 KALDLLM--ENNAIVQSMAAKTQRFRRKMEAAGFTISGGHHPICPVMLGDARLASCMAN- 1161
+++ LL E A+ ++ + R+ + GF + I P+ +G+A L S + +
Sbjct: 433 ESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGFPVIPCPSHIIPIRVGNAALNSKICDL 492
Query: 1162 DMAKRGIFVIGFSYPVVPR 1218
++K I+V +YP VPR
Sbjct: 493 LLSKHSIYVQAINYPTVPR 511
>ref|NP_065584.2| 5-aminolevulinate synthase, nonspecific, mitochondrial precursor [Mus
musculus].
Length = 642
Score = 186 bits (471), Expect = 4e-47
Identities = 112/319 (35%), Positives = 175/319 (54%), Gaps = 5/319 (1%)
Frame = +1
Query: 277 FCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKDLEAKIARFHQREDAI 456
+C+N+YLG+S HP V A ++ +++ GAG R I GT H +LE +A H ++ A+
Sbjct: 250 WCSNDYLGMSRHPRVCGAVMETVKQHGAGAGGTRNISGTSKFHVELEQALADLHGKDAAL 309
Query: 457 LYPSCFDAN-AGLFE-ALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDVADLEAK 630
L+ SCF AN + LF A + P + SD NHAS+I GIR + KY +RH DV L
Sbjct: 310 LFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNSRVPKYIFRHNDVNHLREL 369
Query: 631 LQEAQKHRLRLVATDGTFSMDGDIAPLQDICRLASQYGALVFVDDCHATGFLGATGRGTD 810
LQ + ++VA + SMDG + PL+++C +A ++GA+ FVD+ HA G GA G G
Sbjct: 370 LQRSDPSVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGLYGARGGGIG 429
Query: 811 ELLGVMDQVAIINSTLGKALXXXXXXXXXXXXXLVSLLRQRARPYLFSNSLPPAVVGCAS 990
+ GVM ++ II+ TLGKA L+ +R A ++F+ SLPP ++ A
Sbjct: 430 DRDGVMPKMDIISGTLGKAF-GCVGGYIASTSLLIDTVRSYAAGFIFTTSLPPMLLAGAL 488
Query: 991 KALDLL--MENNAIVQSMAAKTQRFRRKMEAAGFTISGGHHPICPVMLGDARLASCMAND 1164
+++ +L E A+ + + R+ + AG + I PV + DA + + ++
Sbjct: 489 ESVRILKSSEGRALRRQHQRNVKLLRQMLMDAGLPVIHCPSHIIPVRVADAAKNTEICDE 548
Query: 1165 -MAKRGIFVIGFSYPVVPR 1218
M + I+V +YP VPR
Sbjct: 549 LMTRHNIYVQAINYPTVPR 567
>ref|NP_035609.1| serine palmitoyltransferase 2 [Mus musculus].
Length = 560
Score = 140 bits (353), Expect = 2e-33
Identities = 98/335 (29%), Positives = 164/335 (48%), Gaps = 18/335 (5%)
Frame = +1
Query: 265 GIINFCANNYLGLSSHPEVIQ-AGLQALEEFGAGLSSVRFICGTQSIHKDLEAKIARFHQ 441
G+IN + NYLG + + Q A + L+E+GAG+ S R G H++LE +ARF
Sbjct: 167 GVINMGSYNYLGFARNTGSCQEAAAEVLKEYGAGVCSTRQEIGNLDKHEELEKLVARFLG 226
Query: 442 REDAILYPSCFDANAGLFEALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDVADL 621
E A+ Y F N+ AL+ +LSDELNHAS++ G RL A ++H ++ L
Sbjct: 227 VEAAMTYGMGFATNSMNIPALVGKGCLILSDELNHASLVLGARLSGATIRIFKHNNMQSL 286
Query: 622 EAKLQEA---------QKHRLRLVATDGTFSMDGDIAPLQDICRLASQYGALVFVDDCHA 774
E L++A + + L+ +G +SM+G I L ++ L +Y A +++D+ H+
Sbjct: 287 EKLLKDAIVYGQPRTRRPWKKILILVEGIYSMEGSIVRLPEVIALKKKYKAYLYLDEAHS 346
Query: 775 TGFLGATGRGTDELLGV-MDQVAIINSTLGKALXXXXXXXXXXXXXLVSLLRQRARPYLF 951
G LG +GRG + G+ + V ++ T K+ L+ LR + ++
Sbjct: 347 IGALGPSGRGVVDYFGLDPEDVDVMMGTFTKSF-GASGGYIGGKKELIDYLRTHSHSAVY 405
Query: 952 SNSLPPAVVGCASKALDLLMENNA------IVQSMAAKTQRFRRKMEAAGFTISGGH-HP 1110
+ S+ P V+ ++ +M + +Q +A T+ FRR+++ GF I G P
Sbjct: 406 ATSMSPPVMEQIITSMKCIMGQDGTSLGKECIQQLAENTRYFRRRLKEMGFIIYGNEDSP 465
Query: 1111 ICPVMLGDARLASCMANDMAKRGIFVIGFSYPVVP 1215
+ P+ML +M KR I V+ +P P
Sbjct: 466 VVPLMLYMPAKIGAFGREMLKRNIGVVVVGFPATP 500
>ref|NP_780676.1| serine palmitoyltransferase 3 [Mus musculus].
Length = 563
Score = 130 bits (327), Expect = 2e-30
Identities = 98/339 (28%), Positives = 158/339 (46%), Gaps = 18/339 (5%)
Frame = +1
Query: 244 HVDGVSGGIINFCANNYLGLSS-HPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKDLEA 420
H V IIN + NYLGL+ + + + LE++G G++S R GT IHK+LE
Sbjct: 154 HTGKVIENIINMASYNYLGLAGKYDDSMVRVKDTLEKYGVGVASTRNEMGTLDIHKELED 213
Query: 421 KIARFHQREDAILYPSCFDANAGLFEALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYR 600
+A F E + + F NA + +LSDE NH S+I G RL A ++
Sbjct: 214 LMAEFLNVEAVMSFGMGFATNAMNIPVFVGKGCLILSDEFNHTSVILGSRLSGAVIRPFK 273
Query: 601 HLDVADLEAKLQEA---------QKHRLRLVATDGTFSMDGDIAPLQDICRLASQYGALV 753
H + +LE L+EA + + L+ +G +SM+G I L I L +Y A +
Sbjct: 274 HNNAENLEKLLREAIIRGQPGTGRAWKKILIVVEGVYSMEGSIVNLAQIVALKKKYKAYL 333
Query: 754 FVDDCHATGFLGATGRGTDELLGV-MDQVAIINSTLGKALXXXXXXXXXXXXXLVSLLRQ 930
++D+ H+ G G TGRG EL G+ + + + T K+ +V LR
Sbjct: 334 YIDEAHSIGCTGPTGRGVRELFGLDPEDIDVYMGTFTKSF-SGSGGYIGGKKEIVDYLRM 392
Query: 931 RARPYLFSNSLPPAVVGCASKALDLLM--ENN----AIVQSMAAKTQRFRRKMEAAGFTI 1092
++ ++ S+ P V ++L + M E N +Q + + FRR+++ GF I
Sbjct: 393 QSHSTTYATSMSPVVAAQLIRSLKITMGYEGNIGGMERIQQLKENIKYFRRRLKEMGFII 452
Query: 1093 SGG-HHPICPVMLGDARLASCMANDMAKRGIFVIGFSYP 1206
G P+ PV+L S + + K+ I V+ +P
Sbjct: 453 YGNDFSPVIPVLLYMPAKVSAFSRFLLKKKISVVVVGFP 491
>ref|NP_033295.2| serine palmitoyltransferase 1 [Mus musculus].
Length = 473
Score = 126 bits (317), Expect = 3e-29
Identities = 88/302 (29%), Positives = 148/302 (49%), Gaps = 13/302 (4%)
Frame = +1
Query: 232 GPRIHVDGVSGG-IINFCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHK 408
GP H V+G +NF + N+LGL ++P V +L+++G G R GT +H
Sbjct: 87 GPPTHNIVVNGKECVNFASFNFLGLLANPRVKATAFSSLKKYGVGTCGPRGFYGTFDVHL 146
Query: 409 DLEAKIARFHQREDAILYPSCFDANAGLFEALLTPEDAVLSDELNHASIIDGIRLCKAHK 588
DLE ++A+F + E+AI+Y F A A D + D +I G++ ++
Sbjct: 147 DLEERLAKFMKTEEAIIYSYGFSTIASAIPAYSKRGDIIFVDSAACFAIQKGLQASRSDI 206
Query: 589 YRYRHLDVADLEAKLQEAQ--------KHRL--RLVATDGTFSMDGDIAPLQDICRLASQ 738
++H DVADLE L+E + K R+ R + +G + G I PL ++ +L +
Sbjct: 207 KLFKHNDVADLERLLKEQEIEDQKNPRKARVTRRFIVVEGLYMNTGTICPLPELVKLKYK 266
Query: 739 YGALVFVDDCHATGFLGATGRGTDELLGV-MDQVAIINSTLGKALXXXXXXXXXXXXXLV 915
Y A +F+++ + G LG GRG E G+ +D + +I++ + AL +V
Sbjct: 267 YKARIFLEESLSFGVLGEHGRGVTEHYGISIDDIDLISANMENAL-ASVGGFCCGRSFVV 325
Query: 916 SLLRQRARPYLFSNSLPPAVVGCASKALDLLMENNAIVQSMAAKTQRFRRKME-AAGFTI 1092
R + Y FS SLPP + A +AL+++ EN I + K Q + ++ +G +
Sbjct: 326 DHQRLSGQGYCFSASLPPLLAAAAIEALNIMEENPDIFAVLKKKCQNIHKSLQGVSGLKV 385
Query: 1093 SG 1098
G
Sbjct: 386 VG 387
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 43,452,469
Number of extensions: 1341784
Number of successful extensions: 5501
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 5453
Number of HSP's successfully gapped: 8
Length of query: 407
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 303
Effective length of database: 12,493,815
Effective search space: 3785625945
Effective search space used: 3785625945
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014032
(1221 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055106.1| 2-amino-3-ketobutyrate coenzyme A ligase, mitoc... 625 e-179
Alignment gi|NP_001165161.1| 2-amino-3-ketobutyrate coenzyme A ligase, mi... 611 e-175
Alignment gi|NP_001033057.1| 5-aminolevulinate synthase, erythroid-specif... 201 1e-51
Alignment gi|NP_001033056.1| 5-aminolevulinate synthase, erythroid-specif... 201 1e-51
Alignment gi|NP_000023.2| 5-aminolevulinate synthase, erythroid-specific,... 201 1e-51
Alignment gi|NP_954635.1| 5-aminolevulinate synthase, nonspecific, mitoch... 188 8e-48
Alignment gi|NP_000679.1| 5-aminolevulinate synthase, nonspecific, mitoch... 188 8e-48
Alignment gi|NP_004854.1| serine palmitoyltransferase 2 [Homo sapiens]. 146 3e-35
Alignment gi|NP_060797.2| serine palmitoyltransferase 3 [Homo sapiens]. 135 8e-32
Alignment gi|NP_006406.1| serine palmitoyltransferase 1 isoform a [Homo s... 125 6e-29
>ref|NP_055106.1| 2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial isoform 2
precursor [Homo sapiens].
Length = 419
Score = 625 bits (1613), Expect = e-179
Identities = 322/383 (84%), Positives = 333/383 (86%)
Frame = +1
Query: 70 MWAGRILCAALSRAPRGCRPQSALAQXXXXXXXXXXXXXXAGTWKSERVITSRQGPRIHV 249
MW G AAL PRG R QSALAQ AGTWKSERVITSRQGP I V
Sbjct: 1 MWPGNAWRAALFWVPRGRRAQSALAQLRGILEGELEGIRGAGTWKSERVITSRQGPHIRV 60
Query: 250 DGVSGGIINFCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKDLEAKIA 429
DGVSGGI+NFCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHK+LEAKIA
Sbjct: 61 DGVSGGILNFCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKNLEAKIA 120
Query: 430 RFHQREDAILYPSCFDANAGLFEALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLD 609
RFHQREDAILYPSC+DANAGLFEALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLD
Sbjct: 121 RFHQREDAILYPSCYDANAGLFEALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLD 180
Query: 610 VADLEAKLQEAQKHRLRLVATDGTFSMDGDIAPLQDICRLASQYGALVFVDDCHATGFLG 789
+ADLEAKLQEAQKHRLRLVATDG FSMDGDIAPLQ+IC LAS+YGALVF+D+CHATGFLG
Sbjct: 181 MADLEAKLQEAQKHRLRLVATDGAFSMDGDIAPLQEICCLASRYGALVFMDECHATGFLG 240
Query: 790 ATGRGTDELLGVMDQVAIINSTLGKALXXXXXXXXXXXXXLVSLLRQRARPYLFSNSLPP 969
TGRGTDELLGVMDQV IINSTLGKAL LVSLLRQRARPYLFSNSLPP
Sbjct: 241 PTGRGTDELLGVMDQVTIINSTLGKALGGASGGYTTGPGPLVSLLRQRARPYLFSNSLPP 300
Query: 970 AVVGCASKALDLLMENNAIVQSMAAKTQRFRRKMEAAGFTISGGHHPICPVMLGDARLAS 1149
AVVGCASKALDLLM +N IVQSMAAKTQRFR KMEAAGFTISG HPICPVMLGDARLAS
Sbjct: 301 AVVGCASKALDLLMGSNTIVQSMAAKTQRFRSKMEAAGFTISGASHPICPVMLGDARLAS 360
Query: 1150 CMANDMAKRGIFVIGFSYPVVPR 1218
MA+DM KRGIFVIGFSYPVVP+
Sbjct: 361 RMADDMLKRGIFVIGFSYPVVPK 383
>ref|NP_001165161.1| 2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial isoform 1
precursor [Homo sapiens].
Length = 445
Score = 611 bits (1576), Expect = e-175
Identities = 322/409 (78%), Positives = 333/409 (81%), Gaps = 26/409 (6%)
Frame = +1
Query: 70 MWAGRILCAALSRAPRGCRPQSALAQXXXXXXXXXXXXXXAGTWKSERVITSRQGPRIHV 249
MW G AAL PRG R QSALAQ AGTWKSERVITSRQGP I V
Sbjct: 1 MWPGNAWRAALFWVPRGRRAQSALAQLRGILEGELEGIRGAGTWKSERVITSRQGPHIRV 60
Query: 250 DGVSGG--------------------------IINFCANNYLGLSSHPEVIQAGLQALEE 351
DGVSGG I+NFCANNYLGLSSHPEVIQAGLQALEE
Sbjct: 61 DGVSGGPGTVIFPGLPLPHLSCCIHLLSFTSGILNFCANNYLGLSSHPEVIQAGLQALEE 120
Query: 352 FGAGLSSVRFICGTQSIHKDLEAKIARFHQREDAILYPSCFDANAGLFEALLTPEDAVLS 531
FGAGLSSVRFICGTQSIHK+LEAKIARFHQREDAILYPSC+DANAGLFEALLTPEDAVLS
Sbjct: 121 FGAGLSSVRFICGTQSIHKNLEAKIARFHQREDAILYPSCYDANAGLFEALLTPEDAVLS 180
Query: 532 DELNHASIIDGIRLCKAHKYRYRHLDVADLEAKLQEAQKHRLRLVATDGTFSMDGDIAPL 711
DELNHASIIDGIRLCKAHKYRYRHLD+ADLEAKLQEAQKHRLRLVATDG FSMDGDIAPL
Sbjct: 181 DELNHASIIDGIRLCKAHKYRYRHLDMADLEAKLQEAQKHRLRLVATDGAFSMDGDIAPL 240
Query: 712 QDICRLASQYGALVFVDDCHATGFLGATGRGTDELLGVMDQVAIINSTLGKALXXXXXXX 891
Q+IC LAS+YGALVF+D+CHATGFLG TGRGTDELLGVMDQV IINSTLGKAL
Sbjct: 241 QEICCLASRYGALVFMDECHATGFLGPTGRGTDELLGVMDQVTIINSTLGKALGGASGGY 300
Query: 892 XXXXXXLVSLLRQRARPYLFSNSLPPAVVGCASKALDLLMENNAIVQSMAAKTQRFRRKM 1071
LVSLLRQRARPYLFSNSLPPAVVGCASKALDLLM +N IVQSMAAKTQRFR KM
Sbjct: 301 TTGPGPLVSLLRQRARPYLFSNSLPPAVVGCASKALDLLMGSNTIVQSMAAKTQRFRSKM 360
Query: 1072 EAAGFTISGGHHPICPVMLGDARLASCMANDMAKRGIFVIGFSYPVVPR 1218
EAAGFTISG HPICPVMLGDARLAS MA+DM KRGIFVIGFSYPVVP+
Sbjct: 361 EAAGFTISGASHPICPVMLGDARLASRMADDMLKRGIFVIGFSYPVVPK 409
>ref|NP_001033057.1| 5-aminolevulinate synthase, erythroid-specific, mitochondrial isoform
c precursor [Homo sapiens].
Length = 574
Score = 201 bits (510), Expect = 1e-51
Identities = 119/319 (37%), Positives = 183/319 (57%), Gaps = 5/319 (1%)
Frame = +1
Query: 277 FCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKDLEAKIARFHQREDAI 456
+C+N+YLG+S HP+V+QA + L+ GAG R I GT H +LE ++A HQ++ A+
Sbjct: 181 WCSNDYLGMSRHPQVLQATQETLQRHGAGAGGTRNISGTSKFHVELEQELAELHQKDSAL 240
Query: 457 LYPSCFDAN-AGLFE-ALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDVADLEAK 630
L+ SCF AN + LF A + P + SD NHAS+I GIR A K+ +RH D L+
Sbjct: 241 LFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAAKFVFRHNDPDHLKKL 300
Query: 631 LQEAQKHRLRLVATDGTFSMDGDIAPLQDICRLASQYGALVFVDDCHATGFLGATGRGTD 810
L+++ ++VA + SMDG I PL+++C ++ QYGAL FVD+ HA G G+ G G
Sbjct: 301 LEKSNPKIPKIVAFETVHSMDGAICPLEELCDVSHQYGALTFVDEVHAVGLYGSRGAGIG 360
Query: 811 ELLGVMDQVAIINSTLGKALXXXXXXXXXXXXXLVSLLRQRARPYLFSNSLPPAVVGCAS 990
E G+M ++ II+ TLGKA LV ++R A ++F+ SLPP V+ A
Sbjct: 361 ERDGIMHKIDIISGTLGKAF-GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGAL 419
Query: 991 KALDLLM--ENNAIVQSMAAKTQRFRRKMEAAGFTISGGHHPICPVMLGDARLASCMAN- 1161
+++ LL E A+ ++ + R+ + G + I P+ +G+A L S + +
Sbjct: 420 ESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSKLCDL 479
Query: 1162 DMAKRGIFVIGFSYPVVPR 1218
++K GI+V +YP VPR
Sbjct: 480 LLSKHGIYVQAINYPTVPR 498
>ref|NP_001033056.1| 5-aminolevulinate synthase, erythroid-specific, mitochondrial isoform
b precursor [Homo sapiens].
Length = 550
Score = 201 bits (510), Expect = 1e-51
Identities = 119/319 (37%), Positives = 183/319 (57%), Gaps = 5/319 (1%)
Frame = +1
Query: 277 FCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKDLEAKIARFHQREDAI 456
+C+N+YLG+S HP+V+QA + L+ GAG R I GT H +LE ++A HQ++ A+
Sbjct: 157 WCSNDYLGMSRHPQVLQATQETLQRHGAGAGGTRNISGTSKFHVELEQELAELHQKDSAL 216
Query: 457 LYPSCFDAN-AGLFE-ALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDVADLEAK 630
L+ SCF AN + LF A + P + SD NHAS+I GIR A K+ +RH D L+
Sbjct: 217 LFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAAKFVFRHNDPDHLKKL 276
Query: 631 LQEAQKHRLRLVATDGTFSMDGDIAPLQDICRLASQYGALVFVDDCHATGFLGATGRGTD 810
L+++ ++VA + SMDG I PL+++C ++ QYGAL FVD+ HA G G+ G G
Sbjct: 277 LEKSNPKIPKIVAFETVHSMDGAICPLEELCDVSHQYGALTFVDEVHAVGLYGSRGAGIG 336
Query: 811 ELLGVMDQVAIINSTLGKALXXXXXXXXXXXXXLVSLLRQRARPYLFSNSLPPAVVGCAS 990
E G+M ++ II+ TLGKA LV ++R A ++F+ SLPP V+ A
Sbjct: 337 ERDGIMHKIDIISGTLGKAF-GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGAL 395
Query: 991 KALDLLM--ENNAIVQSMAAKTQRFRRKMEAAGFTISGGHHPICPVMLGDARLASCMAN- 1161
+++ LL E A+ ++ + R+ + G + I P+ +G+A L S + +
Sbjct: 396 ESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSKLCDL 455
Query: 1162 DMAKRGIFVIGFSYPVVPR 1218
++K GI+V +YP VPR
Sbjct: 456 LLSKHGIYVQAINYPTVPR 474
>ref|NP_000023.2| 5-aminolevulinate synthase, erythroid-specific, mitochondrial isoform
a precursor [Homo sapiens].
Length = 587
Score = 201 bits (510), Expect = 1e-51
Identities = 119/319 (37%), Positives = 183/319 (57%), Gaps = 5/319 (1%)
Frame = +1
Query: 277 FCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKDLEAKIARFHQREDAI 456
+C+N+YLG+S HP+V+QA + L+ GAG R I GT H +LE ++A HQ++ A+
Sbjct: 194 WCSNDYLGMSRHPQVLQATQETLQRHGAGAGGTRNISGTSKFHVELEQELAELHQKDSAL 253
Query: 457 LYPSCFDAN-AGLFE-ALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDVADLEAK 630
L+ SCF AN + LF A + P + SD NHAS+I GIR A K+ +RH D L+
Sbjct: 254 LFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAAKFVFRHNDPDHLKKL 313
Query: 631 LQEAQKHRLRLVATDGTFSMDGDIAPLQDICRLASQYGALVFVDDCHATGFLGATGRGTD 810
L+++ ++VA + SMDG I PL+++C ++ QYGAL FVD+ HA G G+ G G
Sbjct: 314 LEKSNPKIPKIVAFETVHSMDGAICPLEELCDVSHQYGALTFVDEVHAVGLYGSRGAGIG 373
Query: 811 ELLGVMDQVAIINSTLGKALXXXXXXXXXXXXXLVSLLRQRARPYLFSNSLPPAVVGCAS 990
E G+M ++ II+ TLGKA LV ++R A ++F+ SLPP V+ A
Sbjct: 374 ERDGIMHKIDIISGTLGKAF-GCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGAL 432
Query: 991 KALDLLM--ENNAIVQSMAAKTQRFRRKMEAAGFTISGGHHPICPVMLGDARLASCMAN- 1161
+++ LL E A+ ++ + R+ + G + I P+ +G+A L S + +
Sbjct: 433 ESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSKLCDL 492
Query: 1162 DMAKRGIFVIGFSYPVVPR 1218
++K GI+V +YP VPR
Sbjct: 493 LLSKHGIYVQAINYPTVPR 511
>ref|NP_954635.1| 5-aminolevulinate synthase, nonspecific, mitochondrial precursor
[Homo sapiens].
Length = 640
Score = 188 bits (478), Expect = 8e-48
Identities = 113/319 (35%), Positives = 176/319 (55%), Gaps = 5/319 (1%)
Frame = +1
Query: 277 FCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKDLEAKIARFHQREDAI 456
+C+N+YLG+S HP V A + L++ GAG R I GT H DLE ++A H ++ A+
Sbjct: 248 WCSNDYLGMSRHPRVCGAVMDTLKQHGAGAGGTRNISGTSKFHVDLERELADLHGKDAAL 307
Query: 457 LYPSCFDAN-AGLFE-ALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDVADLEAK 630
L+ SCF AN + LF A + P + SD NHAS+I GIR + KY +RH DV+ L
Sbjct: 308 LFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNSRVPKYIFRHNDVSHLREL 367
Query: 631 LQEAQKHRLRLVATDGTFSMDGDIAPLQDICRLASQYGALVFVDDCHATGFLGATGRGTD 810
LQ + ++VA + SMDG + PL+++C +A ++GA+ FVD+ HA G GA G G
Sbjct: 368 LQRSDPSVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGLYGARGGGIG 427
Query: 811 ELLGVMDQVAIINSTLGKALXXXXXXXXXXXXXLVSLLRQRARPYLFSNSLPPAVVGCAS 990
+ GVM ++ II+ TLGKA L+ +R A ++F+ SLPP ++ A
Sbjct: 428 DRDGVMPKMDIISGTLGKAF-GCVGGYIASTSSLIDTVRSYAAGFIFTTSLPPMLLAGAL 486
Query: 991 KALDLL--MENNAIVQSMAAKTQRFRRKMEAAGFTISGGHHPICPVMLGDARLASCMAND 1164
+++ +L E + + + R+ + AG + I PV + DA + + ++
Sbjct: 487 ESVRILKSAEGRVLRRQHQRNVKLMRQMLMDAGLPVVHCPSHIIPVRVADAAKNTEVCDE 546
Query: 1165 -MAKRGIFVIGFSYPVVPR 1218
M++ I+V +YP VPR
Sbjct: 547 LMSRHNIYVQAINYPTVPR 565
>ref|NP_000679.1| 5-aminolevulinate synthase, nonspecific, mitochondrial precursor
[Homo sapiens].
Length = 640
Score = 188 bits (478), Expect = 8e-48
Identities = 113/319 (35%), Positives = 176/319 (55%), Gaps = 5/319 (1%)
Frame = +1
Query: 277 FCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKDLEAKIARFHQREDAI 456
+C+N+YLG+S HP V A + L++ GAG R I GT H DLE ++A H ++ A+
Sbjct: 248 WCSNDYLGMSRHPRVCGAVMDTLKQHGAGAGGTRNISGTSKFHVDLERELADLHGKDAAL 307
Query: 457 LYPSCFDAN-AGLFE-ALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDVADLEAK 630
L+ SCF AN + LF A + P + SD NHAS+I GIR + KY +RH DV+ L
Sbjct: 308 LFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNSRVPKYIFRHNDVSHLREL 367
Query: 631 LQEAQKHRLRLVATDGTFSMDGDIAPLQDICRLASQYGALVFVDDCHATGFLGATGRGTD 810
LQ + ++VA + SMDG + PL+++C +A ++GA+ FVD+ HA G GA G G
Sbjct: 368 LQRSDPSVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGLYGARGGGIG 427
Query: 811 ELLGVMDQVAIINSTLGKALXXXXXXXXXXXXXLVSLLRQRARPYLFSNSLPPAVVGCAS 990
+ GVM ++ II+ TLGKA L+ +R A ++F+ SLPP ++ A
Sbjct: 428 DRDGVMPKMDIISGTLGKAF-GCVGGYIASTSSLIDTVRSYAAGFIFTTSLPPMLLAGAL 486
Query: 991 KALDLL--MENNAIVQSMAAKTQRFRRKMEAAGFTISGGHHPICPVMLGDARLASCMAND 1164
+++ +L E + + + R+ + AG + I PV + DA + + ++
Sbjct: 487 ESVRILKSAEGRVLRRQHQRNVKLMRQMLMDAGLPVVHCPSHIIPVRVADAAKNTEVCDE 546
Query: 1165 -MAKRGIFVIGFSYPVVPR 1218
M++ I+V +YP VPR
Sbjct: 547 LMSRHNIYVQAINYPTVPR 565
>ref|NP_004854.1| serine palmitoyltransferase 2 [Homo sapiens].
Length = 562
Score = 146 bits (369), Expect = 3e-35
Identities = 104/335 (31%), Positives = 164/335 (48%), Gaps = 18/335 (5%)
Frame = +1
Query: 265 GIINFCANNYLGLSSHPEVIQ-AGLQALEEFGAGLSSVRFICGTQSIHKDLEAKIARFHQ 441
G+IN + NYLG + + Q A + LEE+GAG+ S R G H++LE +ARF
Sbjct: 169 GVINMGSYNYLGFARNTGSCQEAAAKVLEEYGAGVCSTRQEIGNLDKHEELEELVARFLG 228
Query: 442 REDAILYPSCFDANAGLFEALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDVADL 621
E A+ Y F N+ AL+ +LSDELNHAS++ G RL A ++H ++ L
Sbjct: 229 VEAAMAYGMGFATNSMNIPALVGKGCLILSDELNHASLVLGARLSGATIRIFKHNNMQSL 288
Query: 622 EAKLQEA---------QKHRLRLVATDGTFSMDGDIAPLQDICRLASQYGALVFVDDCHA 774
E L++A + + L+ +G +SM+G I L ++ L +Y A +++D+ H+
Sbjct: 289 EKLLKDAIVYGQPRTRRPWKKILILVEGIYSMEGSIVRLPEVIALKKKYKAYLYLDEAHS 348
Query: 775 TGFLGATGRGTDELLGV-MDQVAIINSTLGKALXXXXXXXXXXXXXLVSLLRQRARPYLF 951
G LG TGRG E G+ + V ++ T K+ L+ LR + ++
Sbjct: 349 IGALGPTGRGVVEYFGLDPEDVDVMMGTFTKSF-GASGGYIGGKKELIDYLRTHSHSAVY 407
Query: 952 SNSLPPAVVGCASKALDLLMENNA------IVQSMAAKTQRFRRKMEAAGFTISGGH-HP 1110
+ SL P VV ++ +M + VQ +A T+ FRR+++ GF I G P
Sbjct: 408 ATSLSPPVVEQIITSMKCIMGQDGTSLGKECVQQLAENTRYFRRRLKEMGFIIYGNEDSP 467
Query: 1111 ICPVMLGDARLASCMANDMAKRGIFVIGFSYPVVP 1215
+ P+ML +M KR I V+ +P P
Sbjct: 468 VVPLMLYMPAKIGAFGREMLKRNIGVVVVGFPATP 502
>ref|NP_060797.2| serine palmitoyltransferase 3 [Homo sapiens].
Length = 552
Score = 135 bits (340), Expect = 8e-32
Identities = 96/336 (28%), Positives = 167/336 (49%), Gaps = 18/336 (5%)
Frame = +1
Query: 268 IINFCANNYLGLSS-HPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKDLEAKIARFHQR 444
+IN + N+LGL++ + E ++ LE +G G++S R GT HK+LE +A+F
Sbjct: 162 VINMGSYNFLGLAAKYDESMRTIKDVLEVYGTGVASTRHEMGTLDKHKELEDLVAKFLNV 221
Query: 445 EDAILYPSCFDANAGLFEALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDVADLE 624
E A+++ F N+ AL+ +LSDELNH S++ G RL A ++H + LE
Sbjct: 222 EAAMVFGMGFATNSMNIPALVGKGCLILSDELNHTSLVLGARLSGATIRIFKHNNTQSLE 281
Query: 625 AKLQEA---------QKHRLRLVATDGTFSMDGDIAPLQDICRLASQYGALVFVDDCHAT 777
L++A + + L+ +G +SM+G I L I L +Y A +++D+ H+
Sbjct: 282 KLLRDAVIYGQPRTRRAWKKILILVEGVYSMEGSIVHLPQIIALKKKYKAYLYIDEAHSI 341
Query: 778 GFLGATGRGTDELLGV-MDQVAIINSTLGKALXXXXXXXXXXXXXLVSLLRQRARPYLFS 954
G +G TGRG E G+ +V ++ T K+ LV LR + +++
Sbjct: 342 GAVGPTGRGVTEFFGLDPHEVDVLMGTFTKSF-GASGGYIAGRKDLVDYLRVHSHSAVYA 400
Query: 955 NSLPPAVVGCASKALDLLM------ENNAIVQSMAAKTQRFRRKMEAAGFTISGGHH-PI 1113
+S+ P + ++L L+M + VQ +A T+ FR++++ GF I G + +
Sbjct: 401 SSMSPPIAEQIIRSLKLIMGLDGTTQGLQRVQQLAKNTRYFRQRLQEMGFIIYGNENASV 460
Query: 1114 CPVMLGDARLASCMANDMAKRGIFVIGFSYPVVPRA 1221
P++L + A M ++ I V+ +P P A
Sbjct: 461 VPLLLYMPGKVAAFARHMLEKKIGVVVVGFPATPLA 496
>ref|NP_006406.1| serine palmitoyltransferase 1 isoform a [Homo sapiens].
Length = 473
Score = 125 bits (315), Expect = 6e-29
Identities = 89/302 (29%), Positives = 149/302 (49%), Gaps = 13/302 (4%)
Frame = +1
Query: 232 GPRIHVDGVSGG-IINFCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHK 408
GP H V+G INF + N+LGL +P V A L +L+++G G R GT +H
Sbjct: 87 GPPSHKTVVNGKECINFASFNFLGLLDNPRVKAAALASLKKYGVGTCGPRGFYGTFDVHL 146
Query: 409 DLEAKIARFHQREDAILYPSCFDANAGLFEALLTPEDAVLSDELNHASIIDGIRLCKAHK 588
DLE ++A+F + E+AI+Y F A A D V D +I G++ ++
Sbjct: 147 DLEDRLAKFMKTEEAIIYSYGFATIASAIPAYSKRGDIVFVDRAACFAIQKGLQASRSDI 206
Query: 589 YRYRHLDVADLEAKLQEAQ--------KHRL--RLVATDGTFSMDGDIAPLQDICRLASQ 738
++H D+ADLE L+E + K R+ R + +G + G I PL ++ +L +
Sbjct: 207 KLFKHNDMADLERLLKEQEIEDQKNPRKARVTRRFIVVEGLYMNTGTICPLPELVKLKYK 266
Query: 739 YGALVFVDDCHATGFLGATGRGTDELLGV-MDQVAIINSTLGKALXXXXXXXXXXXXXLV 915
Y A +F+++ + G LG GRG E G+ +D + +I++ + AL ++
Sbjct: 267 YKARIFLEESLSFGVLGEHGRGVTEHYGINIDDIDLISANMENAL-ASIGGFCCGRSFVI 325
Query: 916 SLLRQRARPYLFSNSLPPAVVGCASKALDLLMENNAIVQSMAAKTQRFRRKMEA-AGFTI 1092
R + Y FS SLPP + A +AL+++ EN I + K + + ++ +G +
Sbjct: 326 DHQRLSGQGYCFSASLPPLLAAAAIEALNIMEENPGIFAVLKEKCGQIHKALQGISGLKV 385
Query: 1093 SG 1098
G
Sbjct: 386 VG 387
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 51,791,156
Number of extensions: 1640151
Number of successful extensions: 7469
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 7378
Number of HSP's successfully gapped: 10
Length of query: 407
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 302
Effective length of database: 14,835,944
Effective search space: 4480455088
Effective search space used: 4480455088
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014032
(1221 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 527 e-147
>Sscrofa_Chr05
|| Length = 111506441
Score = 527 bits (266), Expect = e-147
Identities = 266/266 (100%)
Strand = Plus / Minus
Query: 1 cgtgatcaggcggtggtctccgtgcgtacagcccgcagcgggcaggcgcgctccggcgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7437940 cgtgatcaggcggtggtctccgtgcgtacagcccgcagcgggcaggcgcgctccggcgag 7437881
Query: 61 gtggacgcgatgtgggccggccgcatcctctgcgctgccctctcccgggccccccgcggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7437880 gtggacgcgatgtgggccggccgcatcctctgcgctgccctctcccgggccccccgcggc 7437821
Query: 121 tgtcgcccgcagtcagcgctggctcagctgcgtggcattctggaggaggagctggaaggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7437820 tgtcgcccgcagtcagcgctggctcagctgcgtggcattctggaggaggagctggaaggc 7437761
Query: 181 atccgcgaggctggcacctggaaaagcgagcgggtcatcacgtcccgtcaggggccgcgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7437760 atccgcgaggctggcacctggaaaagcgagcgggtcatcacgtcccgtcaggggccgcgc 7437701
Query: 241 atacacgtggacggcgtctcgggagg 266
||||||||||||||||||||||||||
Sbjct: 7437700 atacacgtggacggcgtctcgggagg 7437675
Score = 527 bits (266), Expect = e-147
Identities = 266/266 (100%)
Strand = Plus / Minus
Query: 1 cgtgatcaggcggtggtctccgtgcgtacagcccgcagcgggcaggcgcgctccggcgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7534214 cgtgatcaggcggtggtctccgtgcgtacagcccgcagcgggcaggcgcgctccggcgag 7534155
Query: 61 gtggacgcgatgtgggccggccgcatcctctgcgctgccctctcccgggccccccgcggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7534154 gtggacgcgatgtgggccggccgcatcctctgcgctgccctctcccgggccccccgcggc 7534095
Query: 121 tgtcgcccgcagtcagcgctggctcagctgcgtggcattctggaggaggagctggaaggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7534094 tgtcgcccgcagtcagcgctggctcagctgcgtggcattctggaggaggagctggaaggc 7534035
Query: 181 atccgcgaggctggcacctggaaaagcgagcgggtcatcacgtcccgtcaggggccgcgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7534034 atccgcgaggctggcacctggaaaagcgagcgggtcatcacgtcccgtcaggggccgcgc 7533975
Query: 241 atacacgtggacggcgtctcgggagg 266
||||||||||||||||||||||||||
Sbjct: 7533974 atacacgtggacggcgtctcgggagg 7533949
Score = 347 bits (175), Expect = 9e-93
Identities = 175/175 (100%)
Strand = Plus / Minus
Query: 881 cagggggctacacgacggggcctggatccctggtgtccctgctgcggcagcgtgcccggc 940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7432268 cagggggctacacgacggggcctggatccctggtgtccctgctgcggcagcgtgcccggc 7432209
Query: 941 cctacctcttctccaacagcctgccacctgctgttgtcggctgtgcctccaaggccctgg 1000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7432208 cctacctcttctccaacagcctgccacctgctgttgtcggctgtgcctccaaggccctgg 7432149
Query: 1001 acctgctcatggagaacaacgccatcgtccagtctatggcagccaagacccagcg 1055
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7432148 acctgctcatggagaacaacgccatcgtccagtctatggcagccaagacccagcg 7432094
Score = 347 bits (175), Expect = 9e-93
Identities = 175/175 (100%)
Strand = Plus / Minus
Query: 881 cagggggctacacgacggggcctggatccctggtgtccctgctgcggcagcgtgcccggc 940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7528542 cagggggctacacgacggggcctggatccctggtgtccctgctgcggcagcgtgcccggc 7528483
Query: 941 cctacctcttctccaacagcctgccacctgctgttgtcggctgtgcctccaaggccctgg 1000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7528482 cctacctcttctccaacagcctgccacctgctgttgtcggctgtgcctccaaggccctgg 7528423
Query: 1001 acctgctcatggagaacaacgccatcgtccagtctatggcagccaagacccagcg 1055
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7528422 acctgctcatggagaacaacgccatcgtccagtctatggcagccaagacccagcg 7528368
Score = 315 bits (159), Expect = 3e-83
Identities = 159/159 (100%)
Strand = Plus / Minus
Query: 643 cagaagcatcgactgcgcctagtggccactgatgggaccttttccatggacggtgacatc 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7432850 cagaagcatcgactgcgcctagtggccactgatgggaccttttccatggacggtgacatc 7432791
Query: 703 gcgcccctgcaggacatctgccgccttgcctctcaatatggtgccttggtctttgtggac 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7432790 gcgcccctgcaggacatctgccgccttgcctctcaatatggtgccttggtctttgtggac 7432731
Query: 763 gattgccatgccaccggcttcctgggggccactggacgg 801
|||||||||||||||||||||||||||||||||||||||
Sbjct: 7432730 gattgccatgccaccggcttcctgggggccactggacgg 7432692
Score = 315 bits (159), Expect = 3e-83
Identities = 159/159 (100%)
Strand = Plus / Minus
Query: 643 cagaagcatcgactgcgcctagtggccactgatgggaccttttccatggacggtgacatc 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7529124 cagaagcatcgactgcgcctagtggccactgatgggaccttttccatggacggtgacatc 7529065
Query: 703 gcgcccctgcaggacatctgccgccttgcctctcaatatggtgccttggtctttgtggac 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7529064 gcgcccctgcaggacatctgccgccttgcctctcaatatggtgccttggtctttgtggac 7529005
Query: 763 gattgccatgccaccggcttcctgggggccactggacgg 801
|||||||||||||||||||||||||||||||||||||||
Sbjct: 7529004 gattgccatgccaccggcttcctgggggccactggacgg 7528966
Score = 295 bits (149), Expect = 3e-77
Identities = 149/149 (100%)
Strand = Plus / Minus
Query: 497 aggccctgctgaccccagaggacgcggtcctgtcggacgagctgaaccatgcctccatca 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7433713 aggccctgctgaccccagaggacgcggtcctgtcggacgagctgaaccatgcctccatca 7433654
Query: 557 tcgacggcatccgtctgtgcaaggcccacaagtaccgctaccgccacttggacgtggccg 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7433653 tcgacggcatccgtctgtgcaaggcccacaagtaccgctaccgccacttggacgtggccg 7433594
Query: 617 atctggaggccaagctgcaggaggcccag 645
|||||||||||||||||||||||||||||
Sbjct: 7433593 atctggaggccaagctgcaggaggcccag 7433565
Score = 295 bits (149), Expect = 3e-77
Identities = 149/149 (100%)
Strand = Plus / Minus
Query: 497 aggccctgctgaccccagaggacgcggtcctgtcggacgagctgaaccatgcctccatca 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7529986 aggccctgctgaccccagaggacgcggtcctgtcggacgagctgaaccatgcctccatca 7529927
Query: 557 tcgacggcatccgtctgtgcaaggcccacaagtaccgctaccgccacttggacgtggccg 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7529926 tcgacggcatccgtctgtgcaaggcccacaagtaccgctaccgccacttggacgtggccg 7529867
Query: 617 atctggaggccaagctgcaggaggcccag 645
|||||||||||||||||||||||||||||
Sbjct: 7529866 atctggaggccaagctgcaggaggcccag 7529838
Score = 264 bits (133), Expect = 1e-67
Identities = 133/133 (100%)
Strand = Plus / Minus
Query: 264 aggaatcattaacttctgtgccaacaactacctgggcctgagcagccaccccgaggtgat 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7436163 aggaatcattaacttctgtgccaacaactacctgggcctgagcagccaccccgaggtgat 7436104
Query: 324 ccaggcaggtctgcaggccctggaggagtttggagccggccttagctctgtccgattcat 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7436103 ccaggcaggtctgcaggccctggaggagtttggagccggccttagctctgtccgattcat 7436044
Query: 384 ctgtgggacccag 396
|||||||||||||
Sbjct: 7436043 ctgtgggacccag 7436031
Score = 264 bits (133), Expect = 1e-67
Identities = 133/133 (100%)
Strand = Plus / Minus
Query: 264 aggaatcattaacttctgtgccaacaactacctgggcctgagcagccaccccgaggtgat 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7532437 aggaatcattaacttctgtgccaacaactacctgggcctgagcagccaccccgaggtgat 7532378
Query: 324 ccaggcaggtctgcaggccctggaggagtttggagccggccttagctctgtccgattcat 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7532377 ccaggcaggtctgcaggccctggaggagtttggagccggccttagctctgtccgattcat 7532318
Query: 384 ctgtgggacccag 396
|||||||||||||
Sbjct: 7532317 ctgtgggacccag 7532305
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Minus
Query: 394 cagagcatccacaaggatctggaggcgaagatcgcccgcttccaccagcgggaggacgcc 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7434660 cagagcatccacaaggatctggaggcgaagatcgcccgcttccaccagcgggaggacgcc 7434601
Query: 454 atcctctaccccagctgttttgatgccaatgccggcctctttgagg 499
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7434600 atcctctaccccagctgttttgatgccaatgccggcctctttgagg 7434555
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Minus
Query: 394 cagagcatccacaaggatctggaggcgaagatcgcccgcttccaccagcgggaggacgcc 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7530934 cagagcatccacaaggatctggaggcgaagatcgcccgcttccaccagcgggaggacgcc 7530875
Query: 454 atcctctaccccagctgttttgatgccaatgccggcctctttgagg 499
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7530874 atcctctaccccagctgttttgatgccaatgccggcctctttgagg 7530829
Score = 206 bits (104), Expect = 2e-50
Identities = 119/124 (95%)
Strand = Plus / Minus
Query: 1055 gattccgcaggaagatggaggctgccggcttcaccatctcaggaggccatcaccccatct 1114
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 7431373 gattccgcaggaagatggaggctgccggcttcaccatctcaggagccaatcaccccatct 7431314
Query: 1115 gccctgtgatgctgggtgatgctcggctggcctcttgcatggcaaatgacatggcaaaga 1174
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 7431313 gccctgtgatgctgggtgatgctcggctggcctcttgcatggcagatgacatgcaaaaga 7431254
Query: 1175 gagg 1178
||||
Sbjct: 7431253 gagg 7431250
Score = 206 bits (104), Expect = 2e-50
Identities = 119/124 (95%)
Strand = Plus / Minus
Query: 1055 gattccgcaggaagatggaggctgccggcttcaccatctcaggaggccatcaccccatct 1114
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 7527647 gattccgcaggaagatggaggctgccggcttcaccatctcaggagccaatcaccccatct 7527588
Query: 1115 gccctgtgatgctgggtgatgctcggctggcctcttgcatggcaaatgacatggcaaaga 1174
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 7527587 gccctgtgatgctgggtgatgctcggctggcctcttgcatggcagatgacatgcaaaaga 7527528
Query: 1175 gagg 1178
||||
Sbjct: 7527527 gagg 7527524
Score = 161 bits (81), Expect = 1e-36
Identities = 84/85 (98%)
Strand = Plus / Minus
Query: 800 ggggcaccgatgagctgctgggcgtgatggaccaggtcgccatcatcaactccactctgg 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7432556 ggggcaccgatgagctgctgggcgtgatggaccaggtcgccatcatcaactccactctgg 7432497
Query: 860 ggaaggcgctgggcggagtctcagg 884
|||||||||||||||||| ||||||
Sbjct: 7432496 ggaaggcgctgggcggagcctcagg 7432472
Score = 161 bits (81), Expect = 1e-36
Identities = 84/85 (98%)
Strand = Plus / Minus
Query: 800 ggggcaccgatgagctgctgggcgtgatggaccaggtcgccatcatcaactccactctgg 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7528830 ggggcaccgatgagctgctgggcgtgatggaccaggtcgccatcatcaactccactctgg 7528771
Query: 860 ggaaggcgctgggcggagtctcagg 884
|||||||||||||||||| ||||||
Sbjct: 7528770 ggaaggcgctgggcggagcctcagg 7528746
Score = 77.8 bits (39), Expect = 1e-11
Identities = 39/39 (100%)
Strand = Plus / Minus
Query: 1176 aggcatctttgtcatcgggttcagctaccccgtggtccc 1214
|||||||||||||||||||||||||||||||||||||||
Sbjct: 7430978 aggcatctttgtcatcgggttcagctaccccgtggtccc 7430940
Score = 77.8 bits (39), Expect = 1e-11
Identities = 39/39 (100%)
Strand = Plus / Minus
Query: 1176 aggcatctttgtcatcgggttcagctaccccgtggtccc 1214
|||||||||||||||||||||||||||||||||||||||
Sbjct: 7527252 aggcatctttgtcatcgggttcagctaccccgtggtccc 7527214
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,642,645
Number of extensions: 165
Number of successful extensions: 165
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 18
Length of query: 1221
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1200
Effective length of database: 2,808,413,156
Effective search space: 3370095787200
Effective search space used: 3370095787200
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)