Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014038
(1360 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001193102.1| migration and invasion-inhibitory protein [B... 458 e-129
Alignment gi|XP_002694084.1| PREDICTED: invasion inhibitory protein 45-li... 458 e-129
>ref|NP_001193102.1| migration and invasion-inhibitory protein [Bos taurus].
Length = 381
Score = 458 bits (1179), Expect = e-129
Identities = 242/367 (65%), Positives = 263/367 (71%), Gaps = 2/367 (0%)
Frame = +1
Query: 265 MVETRDXXXXXXXXXXXXXXXXAGQDAVRRAVAKAAXXXXXXXXXXXXXXXXXXXXXX-V 441
MVETRD QDAV+R+VAKAA V
Sbjct: 1 MVETRDLVQLRQLNLELLRQLWVRQDAVQRSVAKAASESSLDSSSSYDSEMPSSQEMSSV 60
Query: 442 AFRVACPQDANQSDPCDRSWLGGASSRVISLPPAKRQHQESLGPQRSYSAPLLATSDSSD 621
A R +CPQDA+ DPC R W G ASS + SL PA ++ESLGP R +SAPLLA SDSSD
Sbjct: 61 ASRASCPQDAHPGDPCGRYWPGDASSGMNSLLPATCLYRESLGPPRPHSAPLLAISDSSD 120
Query: 622 PELSAELDDRRTREAQAQGSILARQSKESSVSETTFNKESPVPERSWRLRPYLGYDWIAG 801
PELSAELD T+EAQA SILA+Q K S T NKESPVPE+SWRLRPYLGYDWIAG
Sbjct: 121 PELSAELDSPGTQEAQALRSILAQQGKLSKPRVT--NKESPVPEKSWRLRPYLGYDWIAG 178
Query: 802 SLDNSSPVTSKSEAFFSKLQEFREANKEECICSDPEPQFPDLRGSGTVERDHECVYCYRV 981
SLDN+ PVTSK EAFFSKLQ+FREANKEECICS PEPQF L+ S VE DHECVYCYRV
Sbjct: 179 SLDNTFPVTSKPEAFFSKLQKFREANKEECICSGPEPQFLGLQESDAVEGDHECVYCYRV 238
Query: 982 TRRLFLAPSDPGTPCRLCRMPRDQRGPGTLAEPVQVRVSIPLSILDPPHRYRIHRRKSFD 1161
RRLFL P+DPGTPCRLCR PRDQRG GTLAEP QVRVSIPLS+LDPPHR+RIHRRKSFD
Sbjct: 239 NRRLFLVPADPGTPCRLCRKPRDQRGAGTLAEPAQVRVSIPLSVLDPPHRHRIHRRKSFD 298
Query: 1162 ASDTLALPRHCLLGWDILPPXXXXXXXXXXLDLWSCVS-KAQHRKLSAAATSHLAGPTRV 1338
ASDTLALPRHCLLGWDI+PP LDLWS VS +A H+KLSA + HLA P RV
Sbjct: 299 ASDTLALPRHCLLGWDIIPPKSEKSSAPKTLDLWSSVSPEAHHQKLSATSCPHLAVPMRV 358
Query: 1339 PPPIPIW 1359
PPP PIW
Sbjct: 359 PPPTPIW 365
>ref|XP_002694084.1| PREDICTED: invasion inhibitory protein 45-like [Bos taurus].
Length = 381
Score = 458 bits (1179), Expect = e-129
Identities = 242/367 (65%), Positives = 263/367 (71%), Gaps = 2/367 (0%)
Frame = +1
Query: 265 MVETRDXXXXXXXXXXXXXXXXAGQDAVRRAVAKAAXXXXXXXXXXXXXXXXXXXXXX-V 441
MVETRD QDAV+R+VAKAA V
Sbjct: 1 MVETRDLVQLRQLNLELLRQLWVRQDAVQRSVAKAASESSLDSSSSYDSEMPSSQEMSSV 60
Query: 442 AFRVACPQDANQSDPCDRSWLGGASSRVISLPPAKRQHQESLGPQRSYSAPLLATSDSSD 621
A R +CPQDA+ DPC R W G ASS + SL PA ++ESLGP R +SAPLLA SDSSD
Sbjct: 61 ASRASCPQDAHPGDPCGRYWPGDASSGMNSLLPATCLYRESLGPPRPHSAPLLAISDSSD 120
Query: 622 PELSAELDDRRTREAQAQGSILARQSKESSVSETTFNKESPVPERSWRLRPYLGYDWIAG 801
PELSAELD T+EAQA SILA+Q K S T NKESPVPE+SWRLRPYLGYDWIAG
Sbjct: 121 PELSAELDSPGTQEAQALRSILAQQGKLSKPRVT--NKESPVPEKSWRLRPYLGYDWIAG 178
Query: 802 SLDNSSPVTSKSEAFFSKLQEFREANKEECICSDPEPQFPDLRGSGTVERDHECVYCYRV 981
SLDN+ PVTSK EAFFSKLQ+FREANKEECICS PEPQF L+ S VE DHECVYCYRV
Sbjct: 179 SLDNTFPVTSKPEAFFSKLQKFREANKEECICSGPEPQFLGLQESDAVEGDHECVYCYRV 238
Query: 982 TRRLFLAPSDPGTPCRLCRMPRDQRGPGTLAEPVQVRVSIPLSILDPPHRYRIHRRKSFD 1161
RRLFL P+DPGTPCRLCR PRDQRG GTLAEP QVRVSIPLS+LDPPHR+RIHRRKSFD
Sbjct: 239 NRRLFLVPADPGTPCRLCRKPRDQRGAGTLAEPAQVRVSIPLSVLDPPHRHRIHRRKSFD 298
Query: 1162 ASDTLALPRHCLLGWDILPPXXXXXXXXXXLDLWSCVS-KAQHRKLSAAATSHLAGPTRV 1338
ASDTLALPRHCLLGWDI+PP LDLWS VS +A H+KLSA + HLA P RV
Sbjct: 299 ASDTLALPRHCLLGWDIIPPKSEKSSAPKTLDLWSSVSPEAHHQKLSATSCPHLAVPMRV 358
Query: 1339 PPPIPIW 1359
PPP PIW
Sbjct: 359 PPPTPIW 365
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 62,050,725
Number of extensions: 2181193
Number of successful extensions: 9423
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 9373
Number of HSP's successfully gapped: 2
Length of query: 453
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 347
Effective length of database: 14,174,046
Effective search space: 4918393962
Effective search space used: 4918393962
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014038
(1360 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850247.1| PREDICTED: similar to invasion inhibitory prote... 197 1e-50
Alignment gi|XP_850264.1| PREDICTED: similar to invasion inhibitory prote... 133 5e-31
>ref|XP_850247.1| PREDICTED: similar to invasion inhibitory protein 45 isoform 1 [Canis
familiaris].
Length = 294
Score = 197 bits (502), Expect = 1e-50
Identities = 97/148 (65%), Positives = 107/148 (72%), Gaps = 3/148 (2%)
Frame = +1
Query: 919 PDLRGSGTVERDHECVYCYRVTRRLFLAPSDPGTPCRLCRMPRDQRGPGTLAEPVQVRVS 1098
P +R S VE +H CVYCY V RRLFL PSDPG PCRLC+ PRDQRGP TL EP VRVS
Sbjct: 147 PGVRESRGVEEEHACVYCYHVNRRLFLVPSDPGVPCRLCKTPRDQRGPETLLEPAHVRVS 206
Query: 1099 IPLSILDPPHRYRIHRRKSFDASDTLALPRHCLLGWDILPPXXXXXXXXXXLDLWSCV-S 1275
IPLS+L PPH+YRIHRRKSFDASDTLALPRHCLLGWDI PP LDLWSCV S
Sbjct: 207 IPLSVLHPPHQYRIHRRKSFDASDTLALPRHCLLGWDIFPPKSEKSSAPKSLDLWSCVSS 266
Query: 1276 KAQHRKLSAAATSHLAG--PTRVPPPIP 1353
+A +L AA+ S++ G P PP P
Sbjct: 267 EAPAPELPAASPSYMCGQDPRPAPPVKP 294
Score = 49.7 bits (117), Expect = 7e-06
Identities = 39/101 (38%), Positives = 44/101 (43%), Gaps = 10/101 (9%)
Frame = +3
Query: 798 RVPGQQLSCHQQVRGLLLQAAGVPGSQQGGVYLQ*PRTPV------PRPAGERH----CG 947
RV GQQL HQQ R LLL A G PG QQGGVY Q P V R E H C
Sbjct: 106 RVAGQQLPRHQQARCLLLGAEGFPGGQQGGVYSQRPGDLVXPGVRESRGVEEEHACVYCY 165
Query: 948 EGPRMCLLLPGHPAPVSRAFRSRHPVPPVQDATGPAGTWDP 1070
R L+P P R ++ +D GP +P
Sbjct: 166 HVNRRLFLVPSDPGVPCRLCKT------PRDQRGPETLLEP 200
>ref|XP_850264.1| PREDICTED: similar to invasion inhibitory protein 45 isoform 2
[Canis familiaris].
Length = 281
Score = 133 bits (334), Expect = 5e-31
Identities = 78/158 (49%), Positives = 91/158 (57%)
Frame = +1
Query: 331 AGQDAVRRAVAKAAXXXXXXXXXXXXXXXXXXXXXXVAFRVACPQDANQSDPCDRSWLGG 510
AGQDAVRR+VA+AA VAFR + QDA Q PC SW GG
Sbjct: 26 AGQDAVRRSVARAASESALGASSWDSQTPSSQEMSPVAFRASRLQDAQQDAPCGTSWPGG 85
Query: 511 ASSRVISLPPAKRQHQESLGPQRSYSAPLLATSDSSDPELSAELDDRRTREAQAQGSILA 690
ASS V SLP A+ + SLG R SAPLL S+ D ELSA L +EA+AQ S+L
Sbjct: 86 ASSGVTSLPSARDRRPASLGSPRPCSAPLLPISEPDDSELSAGLPGSVPQEARAQSSVLD 145
Query: 691 RQSKESSVSETTFNKESPVPERSWRLRPYLGYDWIAGS 804
R S+ S TF +E VP+ WRLRPYLGYDWIAG+
Sbjct: 146 RHSQPPK-SRVTFREECAVPDGIWRLRPYLGYDWIAGT 182
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 64,568,857
Number of extensions: 2243810
Number of successful extensions: 10207
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 10177
Number of HSP's successfully gapped: 3
Length of query: 453
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 347
Effective length of database: 15,340,888
Effective search space: 5323288136
Effective search space used: 5323288136
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014038
(1360 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127639.2| PREDICTED: migration and invasion-inhibitory... 610 e-175
>ref|XP_003127639.2| PREDICTED: migration and invasion-inhibitory protein-like [Sus
scrofa].
Length = 364
Score = 610 bits (1573), Expect = e-175
Identities = 308/363 (84%), Positives = 309/363 (85%)
Frame = +1
Query: 265 MVETRDXXXXXXXXXXXXXXXXAGQDAVRRAVAKAAXXXXXXXXXXXXXXXXXXXXXXVA 444
MVETRD AGQDAVRRAVAKAA VA
Sbjct: 1 MVETRDLVQLRQLNLELLRQLRAGQDAVRRAVAKAASESSQDPCSSSDSEIPSSQETSVA 60
Query: 445 FRVACPQDANQSDPCDRSWLGGASSRVISLPPAKRQHQESLGPQRSYSAPLLATSDSSDP 624
FRVACPQDANQSDPCDRSWLGGASSRVISLPPAKRQHQESLGPQRSYSAPLLATSDSSDP
Sbjct: 61 FRVACPQDANQSDPCDRSWLGGASSRVISLPPAKRQHQESLGPQRSYSAPLLATSDSSDP 120
Query: 625 ELSAELDDRRTREAQAQGSILARQSKESSVSETTFNKESPVPERSWRLRPYLGYDWIAGS 804
ELSAELDDRRTREAQAQGSILARQSKESSVSETTFNKESPVPERSWRLRPYLGYDWIAGS
Sbjct: 121 ELSAELDDRRTREAQAQGSILARQSKESSVSETTFNKESPVPERSWRLRPYLGYDWIAGS 180
Query: 805 LDNSSPVTSKSEAFFSKLQEFREANKEECICSDPEPQFPDLRGSGTVERDHECVYCYRVT 984
LDNSSPVTSKSEAFFSKLQEFREANKEECICSDPEPQFPDLRGSGTVERDHECVYCYRVT
Sbjct: 181 LDNSSPVTSKSEAFFSKLQEFREANKEECICSDPEPQFPDLRGSGTVERDHECVYCYRVT 240
Query: 985 RRLFLAPSDPGTPCRLCRMPRDQRGPGTLAEPVQVRVSIPLSILDPPHRYRIHRRKSFDA 1164
RRLFLAPSDPGTPCRLCRMPRDQRGPGTLAEPVQVRVSIPLSILDPPHRYRIHRRKSFDA
Sbjct: 241 RRLFLAPSDPGTPCRLCRMPRDQRGPGTLAEPVQVRVSIPLSILDPPHRYRIHRRKSFDA 300
Query: 1165 SDTLALPRHCLLGWDILPPXXXXXXXXXXLDLWSCVSKAQHRKLSAAATSHLAGPTRVPP 1344
SDTLALPRHCLLGWDILPP LDLWSCVSKAQHRKLSAAATSHL GP+ P
Sbjct: 301 SDTLALPRHCLLGWDILPPKSEKSSAPKSLDLWSCVSKAQHRKLSAAATSHLEGPSLDPF 360
Query: 1345 PIP 1353
P
Sbjct: 361 TCP 363
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 40,217,202
Number of extensions: 1422326
Number of successful extensions: 6293
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6270
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 351
Effective length of database: 8,804,438
Effective search space: 3090357738
Effective search space used: 3090357738
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014038
(1360 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001020536.2| migration and invasion-inhibitory protein [M... 335 5e-92
>ref|NP_001020536.2| migration and invasion-inhibitory protein [Mus musculus].
Length = 387
Score = 335 bits (859), Expect = 5e-92
Identities = 187/375 (49%), Positives = 218/375 (58%), Gaps = 11/375 (2%)
Frame = +1
Query: 259 PRMVETRDXXXXXXXXXXXXXXXXAGQDAVRRAVAKAAXXXXXXXXXXXXXXXXXXXXXX 438
P M ET+D AG +A+ R+V +AA
Sbjct: 2 PNMAETKDPVRLRLLSLELLKQLWAGHEAMCRSVVRAASGSNLDCSSNNLEMPLSQETSS 61
Query: 439 VAF---------RVACPQDANQSDPCDRSWLGGASSRVISLPPAKRQHQESLGPQRSYSA 591
+ + P D+ + D D +W +SR+ S PA QHQE R S
Sbjct: 62 ASSVAPSSQDKRHMLDPLDSRRDDTFDVAWYVKFNSRMDSFLPATGQHQEPQEELRPPSV 121
Query: 592 PLLATSDSSDPELSAELDDRRTREAQAQGSILARQSKESSVSETTFNKESPVPERSWRLR 771
PLLAT P + Q SIL+R SK S T+ +ES VPE SW R
Sbjct: 122 PLLATQGLKGPVSLGGPKGLGPDKTQVPRSILSRLSKPSKPRVTS--QESAVPESSWHSR 179
Query: 772 PYLGYDWIAGSLDNSSPVTSKSEAFFSKLQEFREANKEECICSDPEPQFPDLRGSGTVER 951
PYLGYDWIAGSLDNSSPVTS+ EAFFS LQ FRE NKE+C+C+ PE FP L+ S VE
Sbjct: 180 PYLGYDWIAGSLDNSSPVTSEPEAFFSMLQRFRENNKEDCVCNSPEAVFPGLQESSGVEE 239
Query: 952 DHECVYCYRVTRRLFLAPSDPGTPCRLCRMPRDQRGPGTLAEPVQVRVSIPLSILDPPHR 1131
DHEC+YCYR+ RRLF P DPG PCRLC +PRD++GPGTL EPVQVRVSIPLSI+DPPH+
Sbjct: 240 DHECMYCYRINRRLFPEPVDPGAPCRLCGIPRDEKGPGTLVEPVQVRVSIPLSIMDPPHQ 299
Query: 1132 YRIHRRKSFDASDTLALPRHCLLGWDILPPXXXXXXXXXXLDLWSCVS--KAQHRKLSAA 1305
YRIHRRKSFDASDTLALPRHCLLGWDILPP LDLWS VS Q R LSA
Sbjct: 300 YRIHRRKSFDASDTLALPRHCLLGWDILPPKSEKTSVPKSLDLWSSVSYGAGQRRDLSAT 359
Query: 1306 ATSHLAGPTRVPPPI 1350
+ A P +V PP+
Sbjct: 360 SPPCQALPAQVTPPL 374
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 52,715,172
Number of extensions: 1761300
Number of successful extensions: 7333
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7287
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 348
Effective length of database: 12,463,779
Effective search space: 4337395092
Effective search space used: 4337395092
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014038
(1360 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_068752.2| migration and invasion-inhibitory protein [Homo... 392 e-109
>ref|NP_068752.2| migration and invasion-inhibitory protein [Homo sapiens].
Length = 388
Score = 392 bits (1006), Expect = e-109
Identities = 214/352 (60%), Positives = 237/352 (67%), Gaps = 10/352 (2%)
Frame = +1
Query: 334 GQDAVRRAVAKAAXXXXXXXXXXXXXXXXXXXXXX-VAFRVACPQDANQ----SDPCDRS 498
GQDAVRR+VA+AA + +CP+ + D C
Sbjct: 24 GQDAVRRSVARAASESSLESSSSYNSETPSTPETSSTSLSTSCPRGRSSVWGPPDACRGD 83
Query: 499 WLGGASSRVISLPPAKRQHQESLGPQRSYSAPLLATSDSSDPELSAELDDRRTREAQAQG 678
A S V SLPPAK QHQESLG R +SAP L TS DPE S L D +EAQ
Sbjct: 84 LRDVARSGVASLPPAKCQHQESLGRPRPHSAPSLGTSSLRDPEPSGRLGDPGPQEAQTPR 143
Query: 679 SILARQSKESSVSETTFNKESPVPERSWRLRPYLGYDWIAGSLDNSSPVTSKSEAFFSKL 858
SILA+QSK S TF++ES VP+RSWRLRPYLGYDWIAGSLD SS +TS+ EAFFSKL
Sbjct: 144 SILAQQSKLSK-PRVTFSEESAVPKRSWRLRPYLGYDWIAGSLDTSSSITSQPEAFFSKL 202
Query: 859 QEFREANKEECICSDPEPQFPDLR---GSGTVERDHECVYCYRVTRRLFLAPSDPGTPCR 1029
QEFRE NKEECICS PEPQ P LR GSG VE DHECVYCYRV RRLF P DPGTPCR
Sbjct: 203 QEFRETNKEECICSHPEPQLPGLRESSGSG-VEEDHECVYCYRVNRRLFPVPVDPGTPCR 261
Query: 1030 LCRMPRDQRGPGTLAEPVQVRVSIPLSILDPPHRYRIHRRKSFDASDTLALPRHCLLGWD 1209
LCR PRDQ+GPGTLA+P VRVSIPLSIL+PPHRY IHRRKSFDASDTLALPRHCLLGWD
Sbjct: 262 LCRTPRDQQGPGTLAQPAHVRVSIPLSILEPPHRYHIHRRKSFDASDTLALPRHCLLGWD 321
Query: 1210 ILPPXXXXXXXXXXLDLWSCVS-KAQHRKLSAAATS-HLAGPTRVPPPIPIW 1359
I PP LDLWS VS +AQH+KLS ++ H A P ++ PP P W
Sbjct: 322 IFPPKSEKSSAPRNLDLWSSVSAEAQHQKLSGTSSPFHPASPMQMLPPTPTW 373
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 63,121,915
Number of extensions: 2167279
Number of successful extensions: 9070
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9046
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 347
Effective length of database: 14,802,980
Effective search space: 5136634060
Effective search space used: 5136634060
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014038
(1360 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 648 0.0
>Sscrofa_Chr06
|| Length = 157765593
Score = 648 bits (327), Expect = 0.0
Identities = 327/327 (100%)
Strand = Plus / Plus
Query: 377 agtcaagccaggacccctgcagcagcagcgactcagagataccatcctcccaggagacgt 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66027060 agtcaagccaggacccctgcagcagcagcgactcagagataccatcctcccaggagacgt 66027119
Query: 437 cagtagccttcagggtggcctgcccacaggatgccaaccagagtgacccctgtgatagat 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66027120 cagtagccttcagggtggcctgcccacaggatgccaaccagagtgacccctgtgatagat 66027179
Query: 497 cctggcttggtggggccagttccagggtgatctctctcccacctgccaagcgccaacacc 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66027180 cctggcttggtggggccagttccagggtgatctctctcccacctgccaagcgccaacacc 66027239
Query: 557 aggagtccctgggcccacagagatcctactcagctcccttgctggccacctcagactcca 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66027240 aggagtccctgggcccacagagatcctactcagctcccttgctggccacctcagactcca 66027299
Query: 617 gtgacccagagctttcagcagagctggatgaccgaagaacccgggaggcacaggctcagg 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66027300 gtgacccagagctttcagcagagctggatgaccgaagaacccgggaggcacaggctcagg 66027359
Query: 677 ggtccatcctggctcgacaaagcaagg 703
|||||||||||||||||||||||||||
Sbjct: 66027360 ggtccatcctggctcgacaaagcaagg 66027386
Score = 392 bits (198), Expect = e-106
Identities = 198/198 (100%)
Strand = Plus / Plus
Query: 181 ggtgagagaacccagccgtgaggacgctttgtgacctgggagcctgtgacacctgccgtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66026649 ggtgagagaacccagccgtgaggacgctttgtgacctgggagcctgtgacacctgccgtg 66026708
Query: 241 ggaagccagccgataacgcccaggatggtggagaccagggacctggtgcagctgcggcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66026709 ggaagccagccgataacgcccaggatggtggagaccagggacctggtgcagctgcggcag 66026768
Query: 301 ctcaacctggagctcctgaggcagctgcgggccgggcaggatgccgtgcgacgggctgtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66026769 ctcaacctggagctcctgaggcagctgcgggccgggcaggatgccgtgcgacgggctgtg 66026828
Query: 361 gccaaggcagcctcagag 378
||||||||||||||||||
Sbjct: 66026829 gccaaggcagcctcagag 66026846
Score = 363 bits (183), Expect = 2e-97
Identities = 183/183 (100%)
Strand = Plus / Plus
Query: 1 gttgcccgcgtttcctggcggtgagtgccggggcggcagggtcagggatgcggaggaacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66024605 gttgcccgcgtttcctggcggtgagtgccggggcggcagggtcagggatgcggaggaacg 66024664
Query: 61 gctcagttggttgccctccgttcgtcctcatggaggggccggggcccgcgatgggaaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66024665 gctcagttggttgccctccgttcgtcctcatggaggggccggggcccgcgatgggaaaga 66024724
Query: 121 agagggaggctgtctccctcttcccagtgtcccgctcctgagttctccggcaccacctct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66024725 agagggaggctgtctccctcttcccagtgtcccgctcctgagttctccggcaccacctct 66024784
Query: 181 ggt 183
|||
Sbjct: 66024785 ggt 66024787
Score = 252 bits (127), Expect = 4e-64
Identities = 130/131 (99%)
Strand = Plus / Plus
Query: 962 gtgtctactgttaccgggtcacccggcgcctgtttctcgcgccttcagatcccggcaccc 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66032796 gtgtctactgttaccgggtcacccggcgcctgtttctcgcgccttcagatcccggcaccc 66032855
Query: 1022 cgtgccgcctgtgcaggatgccacgggaccagcggggacctgggaccctggcagagccag 1081
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 66032856 cgtgccgcctgtgcaggatgccacgggaccagcgggggcctgggaccctggcagagccag 66032915
Query: 1082 tgcaggtcagg 1092
|||||||||||
Sbjct: 66032916 tgcaggtcagg 66032926
Score = 250 bits (126), Expect = 2e-63
Identities = 132/134 (98%)
Strand = Plus / Plus
Query: 1188 gcactgcctgctgggctgggacattctccctccgaagtctgagaagagctcagtctccaa 1247
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 66034110 gcactgcctgctgggctgggacattctccctccgaagtctgagaagagctcagcccccaa 66034169
Query: 1248 gagcctggacctctggtcctgtgtctccaaggcccagcaccggaagctgtcggctgctgc 1307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66034170 gagcctggacctctggtcctgtgtctccaaggcccagcaccggaagctgtcggctgctgc 66034229
Query: 1308 cacgtcacacctgg 1321
||||||||||||||
Sbjct: 66034230 cacgtcacacctgg 66034243
Score = 222 bits (112), Expect = 4e-55
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 797 cagggtccctggacaacagctctcctgtcaccagcaagtccgaggccttcttctccaagc 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66031927 cagggtccctggacaacagctctcctgtcaccagcaagtccgaggccttcttctccaagc 66031986
Query: 857 tgcaggagttccgggaagccaacaaggaggagtgtatttgcagtgaccccga 908
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66031987 tgcaggagttccgggaagccaacaaggaggagtgtatttgcagtgaccccga 66032038
Score = 198 bits (100), Expect = 6e-48
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 701 aggaatcgtccgtgtctgagaccaccttcaacaaggagtctccggtgccagagaggagct 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66027872 aggaatcgtccgtgtctgagaccaccttcaacaaggagtctccggtgccagagaggagct 66027931
Query: 761 ggcgcctcagaccgtacctgggctatgattggattgcagg 800
||||||||||||||||||||||||||||||||||||||||
Sbjct: 66027932 ggcgcctcagaccgtacctgggctatgattggattgcagg 66027971
Score = 190 bits (96), Expect = 1e-45
Identities = 99/100 (99%)
Strand = Plus / Plus
Query: 1089 cagggtgagcatcccgctgtccatcctggaccccccgcatcggtaccgtatccaccggcg 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66033090 cagggtgagcatcccgctgtccatcctggaccccccgcatcggtaccgtatccaccggcg 66033149
Query: 1149 gaagagcttcgacgcctctgacacgctggccctgccccgg 1188
|||||||||||||||||| |||||||||||||||||||||
Sbjct: 66033150 gaagagcttcgacgcctccgacacgctggccctgccccgg 66033189
Score = 111 bits (56), Expect = 1e-21
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 909 accccagttcccagacctgcgggggagcggcactgtggagagggaccacgaatgtg 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66032120 accccagttcccagacctgcgggggagcggcactgtggagagggaccacgaatgtg 66032175
Score = 73.8 bits (37), Expect = 2e-10
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 1320 ggctgggccaacacgggtcccacctcccatccccatctggt 1360
||||||||||||||||||||||||||||||||| |||||||
Sbjct: 66034540 ggctgggccaacacgggtcccacctcccatcccaatctggt 66034580
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,026,761
Number of extensions: 225
Number of successful extensions: 225
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 10
Length of query: 1360
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1339
Effective length of database: 2,808,413,156
Effective search space: 3760465215884
Effective search space used: 3760465215884
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)