Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014047
(1304 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001179579.1| cytokine receptor-like factor 3 [Bos taurus]. 172 6e-43
Alignment gi|XP_002695680.1| PREDICTED: cytokine receptor-like factor 3 [... 172 6e-43
>ref|NP_001179579.1| cytokine receptor-like factor 3 [Bos taurus].
Length = 439
Score = 172 bits (436), Expect = 6e-43
Identities = 81/82 (98%), Positives = 82/82 (100%)
Frame = +1
Query: 1 FVNGKEMTNQLPAVTSGSTVTFDIEAVTLGSTNNNEGGNFKLRVTISSNNREVVFDWLLD 180
FVNGKEMTNQLPAVTSGSTVTFD+EAVTLGSTNNNEGGNFKLRVTISSNNREVVFDWLLD
Sbjct: 358 FVNGKEMTNQLPAVTSGSTVTFDVEAVTLGSTNNNEGGNFKLRVTISSNNREVVFDWLLD 417
Query: 181 QSCGSLYFGCSFFYPGWKVLVF 246
QSCGSLYFGCSFFYPGWKVLVF
Sbjct: 418 QSCGSLYFGCSFFYPGWKVLVF 439
>ref|XP_002695680.1| PREDICTED: cytokine receptor-like factor 3 [Bos taurus].
Length = 439
Score = 172 bits (436), Expect = 6e-43
Identities = 81/82 (98%), Positives = 82/82 (100%)
Frame = +1
Query: 1 FVNGKEMTNQLPAVTSGSTVTFDIEAVTLGSTNNNEGGNFKLRVTISSNNREVVFDWLLD 180
FVNGKEMTNQLPAVTSGSTVTFD+EAVTLGSTNNNEGGNFKLRVTISSNNREVVFDWLLD
Sbjct: 358 FVNGKEMTNQLPAVTSGSTVTFDVEAVTLGSTNNNEGGNFKLRVTISSNNREVVFDWLLD 417
Query: 181 QSCGSLYFGCSFFYPGWKVLVF 246
QSCGSLYFGCSFFYPGWKVLVF
Sbjct: 418 QSCGSLYFGCSFFYPGWKVLVF 439
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,975,259
Number of extensions: 1052583
Number of successful extensions: 2544
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2542
Number of HSP's successfully gapped: 2
Length of query: 434
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 329
Effective length of database: 14,207,134
Effective search space: 4674147086
Effective search space used: 4674147086
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-014047
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014047
(1304 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_548277.2| PREDICTED: similar to cytokine receptor-like fa... 167 2e-41
>ref|XP_548277.2| PREDICTED: similar to cytokine receptor-like factor 3 [Canis
familiaris].
Length = 571
Score = 167 bits (424), Expect = 2e-41
Identities = 80/82 (97%), Positives = 81/82 (98%)
Frame = +1
Query: 1 FVNGKEMTNQLPAVTSGSTVTFDIEAVTLGSTNNNEGGNFKLRVTISSNNREVVFDWLLD 180
FVNGKEMTNQLPAVTSGSTVTFDIEAVTLGSTNNNEGGNFKLRVTISSNNREVVFDWLL+
Sbjct: 490 FVNGKEMTNQLPAVTSGSTVTFDIEAVTLGSTNNNEGGNFKLRVTISSNNREVVFDWLLE 549
Query: 181 QSCGSLYFGCSFFYPGWKVLVF 246
QSC SLYFGCSFFYPGWKVLVF
Sbjct: 550 QSCCSLYFGCSFFYPGWKVLVF 571
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,744,833
Number of extensions: 1076993
Number of successful extensions: 2497
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2497
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 328
Effective length of database: 15,340,888
Effective search space: 5031811264
Effective search space used: 5031811264
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014047
(1304 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131802.2| PREDICTED: cytokine receptor-like factor 3 [... 172 3e-43
>ref|XP_003131802.2| PREDICTED: cytokine receptor-like factor 3 [Sus scrofa].
Length = 438
Score = 172 bits (437), Expect = 3e-43
Identities = 82/82 (100%), Positives = 82/82 (100%)
Frame = +1
Query: 1 FVNGKEMTNQLPAVTSGSTVTFDIEAVTLGSTNNNEGGNFKLRVTISSNNREVVFDWLLD 180
FVNGKEMTNQLPAVTSGSTVTFDIEAVTLGSTNNNEGGNFKLRVTISSNNREVVFDWLLD
Sbjct: 357 FVNGKEMTNQLPAVTSGSTVTFDIEAVTLGSTNNNEGGNFKLRVTISSNNREVVFDWLLD 416
Query: 181 QSCGSLYFGCSFFYPGWKVLVF 246
QSCGSLYFGCSFFYPGWKVLVF
Sbjct: 417 QSCGSLYFGCSFFYPGWKVLVF 438
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,207,080
Number of extensions: 671868
Number of successful extensions: 1436
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1435
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 332
Effective length of database: 8,804,438
Effective search space: 2923073416
Effective search space used: 2923073416
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014047
(1304 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_061246.1| cytokine receptor-like factor 3 [Mus musculus]. 158 8e-39
>ref|NP_061246.1| cytokine receptor-like factor 3 [Mus musculus].
Length = 442
Score = 158 bits (400), Expect = 8e-39
Identities = 74/82 (90%), Positives = 80/82 (97%)
Frame = +1
Query: 1 FVNGKEMTNQLPAVTSGSTVTFDIEAVTLGSTNNNEGGNFKLRVTISSNNREVVFDWLLD 180
FVNGKEMTNQLPAVTSGSTVTFDIEAVTLG++N++EGGN KLRVTISSNNREVVFDWLL+
Sbjct: 361 FVNGKEMTNQLPAVTSGSTVTFDIEAVTLGTSNSHEGGNAKLRVTISSNNREVVFDWLLE 420
Query: 181 QSCGSLYFGCSFFYPGWKVLVF 246
Q+CG LYFGCSFFYPGWKVLVF
Sbjct: 421 QACGPLYFGCSFFYPGWKVLVF 442
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,709,528
Number of extensions: 920451
Number of successful extensions: 2138
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2138
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 330
Effective length of database: 12,493,815
Effective search space: 4122958950
Effective search space used: 4122958950
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014047
(1304 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057070.3| cytokine receptor-like factor 3 [Homo sapiens]. 167 2e-41
>ref|NP_057070.3| cytokine receptor-like factor 3 [Homo sapiens].
Length = 442
Score = 167 bits (424), Expect = 2e-41
Identities = 79/82 (96%), Positives = 82/82 (100%)
Frame = +1
Query: 1 FVNGKEMTNQLPAVTSGSTVTFDIEAVTLGSTNNNEGGNFKLRVTISSNNREVVFDWLLD 180
FVNGKEMTNQLPAVTSGSTVTFDIEAVTLG+T+NNEGG+FKLRVTISSNNREVVFDWLLD
Sbjct: 361 FVNGKEMTNQLPAVTSGSTVTFDIEAVTLGTTSNNEGGHFKLRVTISSNNREVVFDWLLD 420
Query: 181 QSCGSLYFGCSFFYPGWKVLVF 246
QSCGSLYFGCSFFYPGWKVLVF
Sbjct: 421 QSCGSLYFGCSFFYPGWKVLVF 442
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,118,064
Number of extensions: 1071824
Number of successful extensions: 2341
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2341
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 329
Effective length of database: 14,835,944
Effective search space: 4881025576
Effective search space used: 4881025576
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014047
(1304 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 2403 0.0
>Sscrofa_Chr12
|| Length = 63588571
Score = 2403 bits (1212), Expect = 0.0
Identities = 1218/1220 (99%)
Strand = Plus / Plus
Query: 1 tttgtaaatggaaaagaaatgactaatcagttgcccgcagttacttctgggtccactgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44763665 tttgtaaatggaaaagaaatgactaatcagttgcccgcagttacttctgggtccactgtc 44763724
Query: 61 acatttgacattgaagctgtgactctaggatccaccaataataacgaaggcggaaacttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44763725 acatttgacattgaagctgtgactctaggatccaccaataataacgaaggcggaaacttc 44763784
Query: 121 aagcttcgagtaactattagctcaaataacagagaagtggtgtttgattggttgctcgat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44763785 aagcttcgagtaactattagctcaaataacagagaagtggtgtttgattggttgctcgat 44763844
Query: 181 cagtcttgtggttctctttactttggatgctcatttttctaccccgggtggaaagtgttg 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 44763845 cagtcttgtggttctctttactttggatgctcatttttctaccctgggtggaaagtgttg 44763904
Query: 241 gtgttctagattttccgacgattggtttcggtttgcaggggttttgtaaagctggcctca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44763905 gtgttctagattttccgacgattggtttcggtttgcaggggttttgtaaagctggcctca 44763964
Query: 301 gtcccatgtagttgtcattgattttaaaaatggatagattcatctctcacttaagccatc 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44763965 gtcccatgtagttgtcattgattttaaaaatggatagattcatctctcacttaagccatt 44764024
Query: 361 ggaaacaaattatttactggatttattttagactgtcttagcagtgagaggcttgaatgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44764025 ggaaacaaattatttactggatttattttagactgtcttagcagtgagaggcttgaatgt 44764084
Query: 421 tgtggataaaacatcttatttttagcgtcgtgttcattggaatatcccattacaataaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44764085 tgtggataaaacatcttatttttagcgtcgtgttcattggaatatcccattacaataaaa 44764144
Query: 481 accaaattgccttttaaagtgtgaggagatacagagcgctctctgtgtacccttcccctg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44764145 accaaattgccttttaaagtgtgaggagatacagagcgctctctgtgtacccttcccctg 44764204
Query: 541 tatttctttttaaagttggttatgggaacaggtaacgtaacatcgttgtattaaatctcc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44764205 tatttctttttaaagttggttatgggaacaggtaacgtaacatcgttgtattaaatctcc 44764264
Query: 601 atcttttaaagatccaagactctagaaagaaaccgcaggaagagaccaggtaggaggtgg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44764265 atcttttaaagatccaagactctagaaagaaaccgcaggaagagaccaggtaggaggtgg 44764324
Query: 661 ctaccgtgtccgctgtattatacgctcacttgtgtgttctccacaggagtgttgaatttg 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44764325 ctaccgtgtccgctgtattatacgctcacttgtgtgttctccacaggagtgttgaatttg 44764384
Query: 721 ctctccatattcagggatttgtaagcagtattgaattttagctcttggtcaggaatcttg 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44764385 ctctccatattcagggatttgtaagcagtattgaattttagctcttggtcaggaatcttg 44764444
Query: 781 aagtccccaaagcatggtgatgtttgcatttttagaaatgactgagcagatgtctacagt 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44764445 aagtccccaaagcatggtgatgtttgcatttttagaaatgactgagcagatgtctacagt 44764504
Query: 841 aggcagagtcttttcttttgtgctttccttgcaatttgattcatgatgggctagagggtt 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44764505 aggcagagtcttttcttttgtgctttccttgcaatttgattcatgatgggctagagggtt 44764564
Query: 901 ttgccagggttaaactccttctggaggaggtatgcccagcggtgttagccatttcccggc 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44764565 ttgccagggttaaactccttctggaggaggtatgcccagcggtgttagccatttcccggc 44764624
Query: 961 tgtgaaaggtgcgcaggtgcgtctcccgcctcagccgggtgcgcgttgcccttggcaggg 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44764625 tgtgaaaggtgcgcaggtgcgtctcccgcctcagccgggtgcgcgttgcccttggcaggg 44764684
Query: 1021 gctgagctgcagtcctgttttacgtcagtttcgtaagtggtctttccctggaccaaacac 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44764685 gctgagctgcagtcctgttttacgtcagtttcgtaagtggtctttccctggaccaaacac 44764744
Query: 1081 acagagggtaactacttgacctattttgggggaaacttaaatttgttgaaaatatttatt 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44764745 acagagggtaactacttgacctattttgggggaaacttaaatttgttgaaaatatttatt 44764804
Query: 1141 tgaagggcttaacttcgtatgtgaaaatgattatctgaacttgctatataccagcctaag 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44764805 tgaagggcttaacttcgtatgtgaaaatgattatctgaacttgctatataccagcctaag 44764864
Query: 1201 atctttctctttaatgtgaa 1220
||||||||||||||||||||
Sbjct: 44764865 atctttctctttaatgtgaa 44764884
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 45,053,870
Number of extensions: 297
Number of successful extensions: 297
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 297
Number of HSP's successfully gapped: 1
Length of query: 1304
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1283
Effective length of database: 2,808,413,156
Effective search space: 3603194079148
Effective search space used: 3603194079148
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)