Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014053
(1025 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001020101.2| C-C chemokine receptor type 7 precursor [Bos... 581 e-166
Alignment gi|NP_001181890.1| C-C chemokine receptor type 6 [Bos taurus]. 223 2e-58
Alignment gi|NP_001091537.1| C-C chemokine receptor type 9 [Bos taurus]. 213 2e-55
Alignment gi|NP_001093763.1| C-C chemokine receptor type 4 [Bos taurus]. 201 7e-52
Alignment gi|NP_001014859.1| C-X-C chemokine receptor type 6 [Bos taurus]. 192 5e-49
Alignment gi|NP_776690.1| C-C chemokine receptor type 11 [Bos taurus]. 188 6e-48
Alignment gi|NP_776726.1| C-X-C chemokine receptor type 4 [Bos taurus]. 177 1e-44
Alignment gi|NP_001011672.2| C-C chemokine receptor type 5 [Bos taurus]. 174 1e-43
Alignment gi|NP_001011673.1| C-X-C chemokine receptor type 3 [Bos taurus]. 171 1e-42
Alignment gi|NP_001071307.1| C-C chemokine receptor type 1 [Bos taurus]. 169 5e-42
>ref|NP_001020101.2| C-C chemokine receptor type 7 precursor [Bos taurus].
Length = 379
Score = 581 bits (1498), Expect = e-166
Identities = 293/323 (90%), Positives = 304/323 (94%)
Frame = +2
Query: 56 MDLGKPMKKSLLVVALLVIFQVCLCQDEVTDDYIGDNTTVDYTLYESVCFKKDVRTFKAW 235
MDLGKPMK ++LVVALLVIFQVCLCQDEVTDDYIGDNTTVDYTLYESVCFKKDVR FKAW
Sbjct: 1 MDLGKPMK-NVLVVALLVIFQVCLCQDEVTDDYIGDNTTVDYTLYESVCFKKDVRNFKAW 59
Query: 236 FLPVMYSIICFVGLLGNGLVMLTYIYFKRLKTMTDTYLLNLAVADILFLLTLPFWAYSAA 415
FLP+MYSIICFVGLLGNGLVMLTYIYFKRLKTMTDTYLLNLA+ADILFLLTLPFWAYSAA
Sbjct: 60 FLPIMYSIICFVGLLGNGLVMLTYIYFKRLKTMTDTYLLNLALADILFLLTLPFWAYSAA 119
Query: 416 KSWVFGVHVCKLIFGIYKISFFSGMLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSC 595
KSWVFGVHVCKLIFGIYKISFFSGMLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSC
Sbjct: 120 KSWVFGVHVCKLIFGIYKISFFSGMLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSC 179
Query: 596 VGIWMLAMVLSTPELLYSGTQKSSSEQALRCSLITEHVEALITIQVAQMVVGFLIPLVAM 775
+GIWMLA+VLSTPE++YSG QKSSSEQALRCSL+TEHVEALITIQVAQMVVGFLIPL+AM
Sbjct: 180 LGIWMLAIVLSTPEVMYSGIQKSSSEQALRCSLVTEHVEALITIQVAQMVVGFLIPLMAM 239
Query: 776 SFCYLVIIRTLLQARNFERNXXXXXXXXXXXXXXXXQLPYNGVVLAQTVANFNITSGTSC 955
SFCYLVIIRTLLQARNFERN QLPYNGVVLAQTVANFNITSGTSC
Sbjct: 240 SFCYLVIIRTLLQARNFERNKAIKVIIAVVVVFVAFQLPYNGVVLAQTVANFNITSGTSC 299
Query: 956 ELNKQLNIAYDVTYSLACVRCCV 1024
EL+KQLNIAYDVTYSLACVRCCV
Sbjct: 300 ELSKQLNIAYDVTYSLACVRCCV 322
>ref|NP_001181890.1| C-C chemokine receptor type 6 [Bos taurus].
Length = 370
Score = 223 bits (569), Expect = 2e-58
Identities = 125/298 (41%), Positives = 180/298 (60%), Gaps = 5/298 (1%)
Frame = +2
Query: 146 DDYIGDNTTVDYTLYES--VCFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLTYIYFK 319
+DY G + DY L + +C ++VR+F F+PV YS+IC GLLGN LV++T+ ++K
Sbjct: 11 EDYFGLANSSDYLLDDDSFLCSLQEVRSFSGLFVPVAYSLICVCGLLGNILVVVTFAFYK 70
Query: 320 RLKTMTDTYLLNLAVADILFLLTLPFWAYS-AAKSWVFGVHVCKLIFGIYKISFFSGMLL 496
+ K+MTD YLLN+AVADILF+LTLPFWA + A W+F +CKL GIY I+F GMLL
Sbjct: 71 KAKSMTDVYLLNMAVADILFVLTLPFWAVNHATGEWIFSNAMCKLTRGIYAINFNCGMLL 130
Query: 497 LLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSGTQKSSSEQ 676
L CIS+DRY+AIVQA + R R+R L KL C+ +W +++++S+ ++ K
Sbjct: 131 LTCISLDRYIAIVQATKSFRLRSRTLAHHKLICLAVWAVSILISSSTFTFNQKYKLQGGN 190
Query: 677 AL--RCSLITEHVEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARNFERNXXXXX 850
R ++E + + + Q++ GF IPLV M FCY I++TL+QA+N +R+
Sbjct: 191 VCEPRYHAVSEPIRWKLLMLGLQLLFGFFIPLVFMIFCYAFIVKTLVQAQNSKRHRAIRV 250
Query: 851 XXXXXXXXXXXQLPYNGVVLAQTVANFNITSGTSCELNKQLNIAYDVTYSLACVRCCV 1024
Q+P+N +VL T N T G SC K L A +VT LA + CC+
Sbjct: 251 IIAVVLVFLACQIPHN-MVLLVTAVNLGRT-GRSCGSEKLLGYAKNVTEVLAFLHCCL 306
>ref|NP_001091537.1| C-C chemokine receptor type 9 [Bos taurus].
Length = 367
Score = 213 bits (543), Expect = 2e-55
Identities = 119/304 (39%), Positives = 179/304 (58%), Gaps = 9/304 (2%)
Frame = +2
Query: 140 VTDDYIGDNTT---VDYTLYESVCFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLTYI 310
++DDY D T D + C K VR F FLP +Y ++ VG +GN LV+L Y
Sbjct: 13 LSDDYGYDGTLPMEYDGNFTDYFCEKSHVRQFAGHFLPPLYWLVFIVGGVGNSLVILVYW 72
Query: 311 YFKRLKTMTDTYLLNLAVADILFLLTLPFWAYSAAKSWVFGVHVCKLIFGIYKISFFSGM 490
Y R+KTMTD +LLNLA+AD+LFL TLPFWA +AA W F +CK++ +YK++F+S +
Sbjct: 73 YCTRVKTMTDMFLLNLAIADLLFLATLPFWAIAAADQWKFQTFMCKVVNSMYKMNFYSCV 132
Query: 491 LLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSGTQKSSS 670
LL++CIS+DRY+AI QA+ A R + LL SK+ C IW+ A L PELLYS Q
Sbjct: 133 LLIMCISVDRYIAIAQAMRAQMWRQKRLLYSKMVCFTIWVTAAALCLPELLYS--QVKEE 190
Query: 671 EQALRCSLI------TEHVEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARNFER 832
C+++ T+ A++T++V ++GF +P V M+ CY +II TL+QA+ +
Sbjct: 191 HGIAICTMVYSSDDSTKLKSAVLTLKV---ILGFFLPFVVMACCYTIIIHTLIQAKKSSK 247
Query: 833 NXXXXXXXXXXXXXXXXQLPYNGVVLAQTVANFNITSGTSCELNKQLNIAYDVTYSLACV 1012
+ Q P+N V+L QT+ + + +SC L+ +++I + VT ++A
Sbjct: 248 HKALKVTITVLTVFVLSQFPHNCVLLVQTIDAYAMFI-SSCALSIKIDICFQVTQTVAFF 306
Query: 1013 RCCV 1024
C+
Sbjct: 307 HSCL 310
>ref|NP_001093763.1| C-C chemokine receptor type 4 [Bos taurus].
Length = 359
Score = 201 bits (512), Expect = 7e-52
Identities = 111/301 (36%), Positives = 174/301 (57%), Gaps = 5/301 (1%)
Frame = +2
Query: 137 EVTDDYIGDNTTVDYTLYESV---CFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLTY 307
++ D + ++ Y LYE++ C K +R F FLP +YS++ GLLGN +V+L
Sbjct: 5 DIADTTVDESIYNSYYLYENLPKPCNKDGIRAFGGLFLPPLYSLVFLFGLLGNSVVVLVL 64
Query: 308 IYFKRLKTMTDTYLLNLAVADILFLLTLPFWAYSAAKSWVFGVHVCKLIFGIYKISFFSG 487
+KRLK+MTD YLLNLA++D+LF+L+LPFW Y AA WVFG+ +CKLI IY + F+SG
Sbjct: 65 FKYKRLKSMTDVYLLNLAISDLLFVLSLPFWGYYAADQWVFGLGLCKLISWIYLVGFYSG 124
Query: 488 MLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSG--TQK 661
+ + +SIDRY+AIV A+ + RAR L ++ V W +A+++S P LL+S T++
Sbjct: 125 IFFITLMSIDRYLAIVHAIFS--LRARTLTYGVITSVATWSVAVLVSLPGLLFSTCYTER 182
Query: 662 SSSEQALRCSLITEHVEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARNFERNXX 841
+ + + S + + L ++++ ++G +IPL M FCY +IIRTL +N ++N
Sbjct: 183 NHTYCKTKYSFNSTRWKVLSSLEI--NILGLVIPLGIMLFCYSMIIRTLQHCKNEKKNKA 240
Query: 842 XXXXXXXXXXXXXXQLPYNGVVLAQTVANFNITSGTSCELNKQLNIAYDVTYSLACVRCC 1021
PYN V+ +T+ + C + L+ A T +LA V CC
Sbjct: 241 VKMIFAVVVLFLGFWTPYNVVLFLETLVELEVLQ--DCTFERHLDYAIQTTETLAFVHCC 298
Query: 1022 V 1024
+
Sbjct: 299 L 299
>ref|NP_001014859.1| C-X-C chemokine receptor type 6 [Bos taurus].
Length = 340
Score = 192 bits (487), Expect = 5e-49
Identities = 99/275 (36%), Positives = 164/275 (59%), Gaps = 3/275 (1%)
Frame = +2
Query: 209 KDVRTFKAWFLPVMYSIICFVGLLGNGLVMLTYIYFKRLKTMTDTYLLNLAVADILFLLT 388
+D F +FLP MY ++ GL+GN LV++ Y+++++LK++TD +L+NL +AD++F+ T
Sbjct: 23 QDFLRFSKFFLPCMYVVVFTCGLVGNSLVLVIYVFYQKLKSLTDVFLMNLPLADLVFVCT 82
Query: 389 LPFWAYSAAKSWVFGVHVCKLIFGIYKISFFSGMLLLLCISIDRYVAIVQAVSAHRHRAR 568
LPFWAY+ WVFG +CK + GIY ++F++ ML+L CI++DR+VA+V+A A+ +A+
Sbjct: 83 LPFWAYAGIHEWVFGNVMCKALLGIYTLNFYTSMLVLTCITVDRFVAVVRATKAYNQQAK 142
Query: 569 VLLISKLSCVGIWMLAMVLSTPELLYSGTQKSSSEQALRCSLITEHVEALITIQVA-QMV 745
+ K C IW++++++S P+++Y + EA+ T+ +A QM
Sbjct: 143 RMAWGKAICSSIWVVSLLVSLPQIIYGNVLYHDKP-------FCGYHEAISTMVLAIQMT 195
Query: 746 VGFLIPLVAMSFCYLVIIRTLLQARNFERNXXXXXXXXXXXXXXXXQLPYNGVVLAQTVA 925
+GF +PL+AM CY VII+TLLQAR F ++ Q P+N V L ++
Sbjct: 196 LGFFLPLLAMILCYSVIIKTLLQARGFRKHKSLKIIFLVVAVFLLTQTPFNLVKLIRS-- 253
Query: 926 NFNITSGTSCELNKQLNIAY--DVTYSLACVRCCV 1024
TS E + + Y VT ++A +R C+
Sbjct: 254 -------TSWEYHTMTSFDYAITVTEAIAYLRACL 281
>ref|NP_776690.1| C-C chemokine receptor type 11 [Bos taurus].
Length = 350
Score = 188 bits (478), Expect = 6e-48
Identities = 103/303 (33%), Positives = 167/303 (55%), Gaps = 6/303 (1%)
Frame = +2
Query: 134 DEVTDDYIGDNT---TVDYTLYESVCFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLT 304
++ TD Y +N T DY+ YE +C K++VR F FLP ++I +GL GN V+
Sbjct: 6 NQSTDYYYEENEMNDTHDYSQYEVICIKEEVRKFAKVFLPAFFTIAFIIGLAGNSTVVAI 65
Query: 305 YIYFKRLKTMTDTYLLNLAVADILFLLTLPFWAYSAAKSWVFGVHVCKLIFGIYKISFFS 484
Y Y+K+ +T TD Y+LNLAVAD+ L TLPFWA +A WV G +CK+ +Y ++F S
Sbjct: 66 YAYYKKRRTKTDVYILNLAVADLFLLFTLPFWAVNAVHGWVLGKIMCKVTSALYTVNFVS 125
Query: 485 GMLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSGTQKS 664
GM L CIS DRY A+ +A S ++ V + C +W+ A++LS P+L++
Sbjct: 126 GMQFLACISTDRYWAVTKAPS----QSGVGKPCWVICFCVWVAAILLSIPQLVFYTVNHK 181
Query: 665 SSEQALRCSLITEH---VEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARNFERN 835
+ RC I + +IQ+ ++ +GF+IP + M+ CY + +TL++ N +++
Sbjct: 182 A-----RCVPIFPYHLGTSMKASIQILEICIGFIIPFLIMAVCYFITAKTLIKMPNIKKS 236
Query: 836 XXXXXXXXXXXXXXXXQLPYNGVVLAQTVANFNITSGTSCELNKQLNIAYDVTYSLACVR 1015
QLPYN V Q + + + T C+++K++++A +T S+A
Sbjct: 237 QPLKVLFTVVIVFIVTQLPYNIVKFCQAI-DIIYSLITDCDMSKRMDVAIQITESIALFH 295
Query: 1016 CCV 1024
C+
Sbjct: 296 SCL 298
>ref|NP_776726.1| C-X-C chemokine receptor type 4 [Bos taurus].
Length = 353
Score = 177 bits (449), Expect = 1e-44
Identities = 101/298 (33%), Positives = 164/298 (55%), Gaps = 1/298 (0%)
Frame = +2
Query: 134 DEVTDDYIGDNTTVDYTLYESVCFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLTYIY 313
D T+D +G DY + CF+++ F FLP +YSII G++GNGLV+L Y
Sbjct: 10 DNYTEDDLGSG---DYDSMKEPCFREENAHFNRIFLPTVYSIIFLTGIVGNGLVILVMGY 66
Query: 314 FKRLKTMTDTYLLNLAVADILFLLTLPFWAYSAAKSWVFGVHVCKLIFGIYKISFFSGML 493
K+L++MTD Y L+L+VAD+LF+LTLPFWA A +W FG +CK + IY ++ +S +L
Sbjct: 67 QKKLRSMTDKYRLHLSVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVNLYSSVL 126
Query: 494 LLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSGTQKSSSE 673
+L IS+DRY+AIV A ++ + R LL K+ VG+W+ A++L+ P+L+++ ++ +
Sbjct: 127 ILAFISLDRYLAIVHATNS--QKPRKLLAEKVVYVGVWLPAVLLTIPDLIFADIKE--VD 182
Query: 674 QALRCSLITEHVEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARNFERNXXXXXX 853
+ C L+ Q +VVG L+P + + CY +II L ++ +++
Sbjct: 183 ERYICDRFYPSDLWLVVFQFQHIVVGLLLPGIVILSCYCIIISKLSHSKGYQKRKALKTT 242
Query: 854 XXXXXXXXXXQLPYN-GVVLAQTVANFNITSGTSCELNKQLNIAYDVTYSLACVRCCV 1024
LPY G+ + + I G CE ++ +T +LA CC+
Sbjct: 243 VILILTFFACWLPYYIGISIDSFILLEIIQQG--CEFESTVHKWISITEALAFFHCCL 298
>ref|NP_001011672.2| C-C chemokine receptor type 5 [Bos taurus].
Length = 352
Score = 174 bits (441), Expect = 1e-43
Identities = 102/286 (35%), Positives = 158/286 (55%), Gaps = 2/286 (0%)
Frame = +2
Query: 173 VDYTLYESVCFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLTYIYFKRLKTMTDTYLL 352
+DY + E C K +VR A LP +YS++ G +GN LV+L I K+LK+MTD YLL
Sbjct: 12 IDYGMSEP-CQKLNVRQIAARLLPPLYSLVFIFGFVGNMLVVLILINCKKLKSMTDIYLL 70
Query: 353 NLAVADILFLLTLPFWAYSAAKSWVFGVHVCKLIFGIYKISFFSGMLLLLCISIDRYVAI 532
NLA++D+LF++T+PFWA+ AA WVFG +C+L G Y I +F G+ ++ ++IDRY+AI
Sbjct: 71 NLAISDLLFIITIPFWAHYAADQWVFGNTMCQLFTGFYFIGYFGGIFFIILLTIDRYLAI 130
Query: 533 VQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSGTQKSSSEQALRCSLITEHVE 712
V AV A +AR + + V W++A+ S P ++++ +QK S +
Sbjct: 131 VHAVFA--LKARTVTFGAATSVVTWVVAVFASLPGIIFTKSQKEGSRHTCSPHFPSSQYH 188
Query: 713 ALITIQVAQMVV-GFLIPLVAMSFCYLVIIRTLLQARN-FERNXXXXXXXXXXXXXXXXQ 886
Q ++V+ G ++PL+ M CY II+TLL+ RN +++
Sbjct: 189 FWKNFQTLKIVILGLVLPLLVMIVCYSGIIKTLLRCRNEKKKHKAVRLIFVIMIVYFLFW 248
Query: 887 LPYNGVVLAQTVANFNITSGTSCELNKQLNIAYDVTYSLACVRCCV 1024
PYN V+L T F +C + +L+ A VT +L CC+
Sbjct: 249 APYNIVLLLSTFQEF--FGLNNCSGSNRLDQAMQVTETLGMTHCCI 292
>ref|NP_001011673.1| C-X-C chemokine receptor type 3 [Bos taurus].
Length = 366
Score = 171 bits (433), Expect = 1e-42
Identities = 98/298 (32%), Positives = 157/298 (52%), Gaps = 7/298 (2%)
Frame = +2
Query: 152 YIGDNTTVDYTLYESV-------CFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLTYI 310
Y+ +N++ DY E+ C + F FLPV+YS++ +GLLGNG+V + +
Sbjct: 18 YLLENSSYDYGENETYFCCTSPPCPQDFSLNFDRTFLPVLYSLLFVLGLLGNGIVAVVLL 77
Query: 311 YFKRLKTMTDTYLLNLAVADILFLLTLPFWAYSAAKSWVFGVHVCKLIFGIYKISFFSGM 490
+ + TDT+LL+LAVAD L +LTLP WA AA WVFG +CK+ ++ I+F++G
Sbjct: 78 SQRAALSSTDTFLLHLAVADALLVLTLPLWAVDAAIQWVFGSGLCKVAGALFNINFYAGA 137
Query: 491 LLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSGTQKSSS 670
LLL CIS DRY++IV A +R + L+CV +W L ++ + P+ ++ + +
Sbjct: 138 LLLACISFDRYLSIVHATQLYRRGPPTRV--ALTCVAVWGLCLLFALPDFIFLSSHHDNR 195
Query: 671 EQALRCSLITEHVEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARNFERNXXXXX 850
A C E +++ Q+V GFL+PL+ M++CY I+ LL +R R
Sbjct: 196 LNATHCQYNFPQ-EGHTALRILQLVAGFLLPLLVMAYCYARILAVLLVSRGQRRLRAMRL 254
Query: 851 XXXXXXXXXXXQLPYNGVVLAQTVANFNITSGTSCELNKQLNIAYDVTYSLACVRCCV 1024
PY+ VVL T+ + + +C ++IA VT + + CC+
Sbjct: 255 VVVVVVAFALCWTPYHLVVLVDTLMDLGALA-RNCGRESSVDIAKSVTSGMGYMHCCL 311
>ref|NP_001071307.1| C-C chemokine receptor type 1 [Bos taurus].
Length = 355
Score = 169 bits (427), Expect = 5e-42
Identities = 99/278 (35%), Positives = 152/278 (54%), Gaps = 3/278 (1%)
Frame = +2
Query: 200 CFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLTYIYFKRLKTMTDTYLLNLAVADILF 379
C K R F A LP +YS++ +GL+GN LV+L + +KRLK+MT YLLNLA++D++F
Sbjct: 24 CQKAQERAFGAQLLPPLYSVVFVIGLVGNILVVLVLMQYKRLKSMTSIYLLNLAISDLIF 83
Query: 380 LLTLPFWA-YSAAKSWVFGVHVCKLIFGIYKISFFSGMLLLLCISIDRYVAIVQAVSAHR 556
L TLPFW Y W+FG +CKL+ G Y + +S + ++ ++IDRY+AIV AV A
Sbjct: 84 LFTLPFWIDYKVKDDWIFGDAMCKLLSGFYFMGLYSEIFFIILLTIDRYLAIVHAVFA-- 141
Query: 557 HRARVLLISKLSCVGIWMLAMVLSTPELLYSGTQKSSSEQALRCSLITEHVEALITIQVA 736
RAR + ++ + +W+LA++ S P L +S TQ + E Q
Sbjct: 142 LRARTITFGIITSIVVWVLAVLASVPGLYFSKTQWEFTHHTCSIHFPPESFTKWKQFQAL 201
Query: 737 QM-VVGFLIPLVAMSFCYLVIIRTLLQARNFERNXXXXXXXXXXXXXXXXQLPYNGVVLA 913
++ ++G ++PL+ M CY II+ LL+ N ++ PYN L+
Sbjct: 202 KLNIMGLVLPLLVMIVCYTGIIKILLRRPNEKKAKAVRLIFVIMIIFFLFWTPYN---LS 258
Query: 914 QTVANFNITSGT-SCELNKQLNIAYDVTYSLACVRCCV 1024
VA F + T CE ++QL++A VT +A CC+
Sbjct: 259 VFVAAFQDSLFTRKCEQSRQLDLAIQVTEVIAYTHCCI 296
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 24,308,869
Number of extensions: 497024
Number of successful extensions: 3594
Number of sequences better than 1.0e-05: 303
Number of HSP's gapped: 3052
Number of HSP's successfully gapped: 304
Length of query: 341
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 238
Effective length of database: 14,273,310
Effective search space: 3397047780
Effective search space used: 3397047780
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014053
(1025 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_548131.2| PREDICTED: similar to C-C chemokine receptor ty... 564 e-161
Alignment gi|XP_541909.2| PREDICTED: similar to chemokine (C-C motif) rec... 217 1e-56
Alignment gi|XP_541197.2| PREDICTED: similar to C-C chemokine receptor ty... 206 2e-53
Alignment gi|XP_851110.1| PREDICTED: similar to C-C chemokine receptor ty... 206 2e-53
Alignment gi|NP_001003020.1| C-C chemokine receptor type 4 [Canis lupus f... 196 3e-50
Alignment gi|XP_851567.1| PREDICTED: similar to C-C chemokine receptor ty... 194 1e-49
Alignment gi|XP_851891.1| PREDICTED: similar to C-X-C chemokine receptor ... 192 4e-49
Alignment gi|NP_001033695.1| C-C chemokine receptor type 1 [Canis lupus f... 181 1e-45
Alignment gi|NP_001041491.1| C-X-C chemokine receptor type 4 [Canis lupus... 178 6e-45
Alignment gi|NP_001012342.2| C-C chemokine receptor type 5 [Canis lupus f... 172 6e-43
>ref|XP_548131.2| PREDICTED: similar to C-C chemokine receptor type 7 precursor (C-C
CKR-7) (CC-CKR-7) (CCR-7) (MIP-3 beta receptor)
(EBV-induced G-protein coupled receptor 1) (EBI1) (BLR2)
[Canis familiaris].
Length = 379
Score = 564 bits (1453), Expect = e-161
Identities = 286/323 (88%), Positives = 295/323 (91%)
Frame = +2
Query: 56 MDLGKPMKKSLLVVALLVIFQVCLCQDEVTDDYIGDNTTVDYTLYESVCFKKDVRTFKAW 235
MDLGKPMK SLLVVALLVIFQVCLCQDEVTDDYIG+NTTVDYTLYESVCFKKDVR FKAW
Sbjct: 1 MDLGKPMK-SLLVVALLVIFQVCLCQDEVTDDYIGENTTVDYTLYESVCFKKDVRNFKAW 59
Query: 236 FLPVMYSIICFVGLLGNGLVMLTYIYFKRLKTMTDTYLLNLAVADILFLLTLPFWAYSAA 415
FLP+MYSIICF+GLLGNGLV+LTYIYFKRLKTMTDTYLLNLA+ADILFLLTLPFWAYSAA
Sbjct: 60 FLPIMYSIICFMGLLGNGLVVLTYIYFKRLKTMTDTYLLNLAMADILFLLTLPFWAYSAA 119
Query: 416 KSWVFGVHVCKLIFGIYKISFFSGMLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSC 595
KSW FGVHVCK+IFGIYKISFFSGMLLLLCISIDRYVAIVQAVSAHRHRARVL ISKLSC
Sbjct: 120 KSWTFGVHVCKIIFGIYKISFFSGMLLLLCISIDRYVAIVQAVSAHRHRARVLFISKLSC 179
Query: 596 VGIWMLAMVLSTPELLYSGTQKSSSEQALRCSLITEHVEALITIQVAQMVVGFLIPLVAM 775
VGIWMLAMVLSTPELLYSG QKSSSEQALRCSL T VEALITIQVAQMVVGFLIPL AM
Sbjct: 180 VGIWMLAMVLSTPELLYSGLQKSSSEQALRCSLNTNQVEALITIQVAQMVVGFLIPLGAM 239
Query: 776 SFCYLVIIRTLLQARNFERNXXXXXXXXXXXXXXXXQLPYNGVVLAQTVANFNITSGTSC 955
SFCYLVIIRTLLQARNFERN QLPYNGV+LAQTVANFNIT SC
Sbjct: 240 SFCYLVIIRTLLQARNFERNKAIKVIIAVVVVFIAFQLPYNGVILAQTVANFNITGSGSC 299
Query: 956 ELNKQLNIAYDVTYSLACVRCCV 1024
EL+KQLNIAYD+TYSLACVRCCV
Sbjct: 300 ELSKQLNIAYDITYSLACVRCCV 322
>ref|XP_541909.2| PREDICTED: similar to chemokine (C-C motif) receptor 9 isoform A
[Canis familiaris].
Length = 367
Score = 217 bits (553), Expect = 1e-56
Identities = 114/301 (37%), Positives = 179/301 (59%), Gaps = 6/301 (1%)
Frame = +2
Query: 140 VTDDYIGDNTTV--DYTLYESV-CFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLTYI 310
++DDY +T+ DY + + C K VR F + FLP +Y ++ VG LGN LV+L Y
Sbjct: 13 ISDDYSYHSTSPVDDYMNFPDLFCQKGHVRQFASHFLPPLYWLVFIVGTLGNSLVILVYC 72
Query: 311 YFKRLKTMTDTYLLNLAVADILFLLTLPFWAYSAAKSWVFGVHVCKLIFGIYKISFFSGM 490
Y R+KTMTD +LLNLA+AD+LFL TLPFWA +AA W F +CK++ +YK++F+S +
Sbjct: 73 YCTRVKTMTDMFLLNLAIADLLFLFTLPFWAIAAADQWKFQTPLCKVVNSMYKMNFYSCV 132
Query: 491 LLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSGTQKSSS 670
LL++CIS+DRY+AI QA A R + L+ SK+ C +W++A L PELLYS Q
Sbjct: 133 LLIMCISVDRYIAIAQATKAQTWRQKRLVYSKMVCFTVWVVAATLCIPELLYS--QLKEE 190
Query: 671 EQALRCSLI---TEHVEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARNFERNXX 841
C+++ ++ + + ++++GF +P V M+ CY +II TLLQAR ++
Sbjct: 191 SDITICTMVYPSDQNSKVKSVVLTLKVILGFFLPFVVMACCYTIIIYTLLQARKSSKHKA 250
Query: 842 XXXXXXXXXXXXXXQLPYNGVVLAQTVANFNITSGTSCELNKQLNIAYDVTYSLACVRCC 1021
Q PYN ++L QT+ + + ++C ++ ++I + VT ++A C
Sbjct: 251 LKVTITVLTVFVLSQFPYNCILLVQTIDAYTVFL-SNCAISTNVDICFQVTQTIAFFHSC 309
Query: 1022 V 1024
+
Sbjct: 310 L 310
>ref|XP_541197.2| PREDICTED: similar to C-C chemokine receptor type 6 (C-C CKR-6)
(CC-CKR-6) (CCR-6) (LARC receptor) (GPR-CY4) (GPRCY4)
(Chemokine receptor-like 3) (CKR-L3) (DRY6) isoform 1
[Canis familiaris].
Length = 376
Score = 206 bits (525), Expect = 2e-53
Identities = 118/301 (39%), Positives = 181/301 (60%), Gaps = 6/301 (1%)
Frame = +2
Query: 140 VTDDYIGD-NTTVDYTLYES--VCFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLTYI 310
+ DD +G N+++DY L + +C ++VR F F+P+ YS+IC GLLGN LV++T+
Sbjct: 14 INDDDLGSGNSSLDYLLDDDSLLCSLQEVREFSELFVPIAYSLICVFGLLGNILVVVTFA 73
Query: 311 YFKRLKTMTDTYLLNLAVADILFLLTLPFWAYS-AAKSWVFGVHVCKLIFGIYKISFFSG 487
++K+ K+MTD YLLN+A+ADILF+LTLPFWA S A W+F CKL+ GIY I+F G
Sbjct: 74 FYKKAKSMTDVYLLNMAIADILFVLTLPFWAVSHATGEWIFSNATCKLMKGIYAINFNCG 133
Query: 488 MLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSGTQ--K 661
MLLL CIS+DRY+AIVQA + R R+R L + C+ +W++++++S +++ +
Sbjct: 134 MLLLTCISMDRYIAIVQATKSFRLRSRTLAHRGIICLVVWVVSVLISGWTFMFNQKYHVQ 193
Query: 662 SSSEQALRCSLITEHVEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARNFERNXX 841
S R + ++ + + Q++ GF IPLV M FCY+ I++TL+QA+N +R+
Sbjct: 194 GSDVCEPRYHEGSNPIKWKLLMLGLQLLFGFFIPLVFMIFCYMFIVKTLVQAQNSKRHKA 253
Query: 842 XXXXXXXXXXXXXXQLPYNGVVLAQTVANFNITSGTSCELNKQLNIAYDVTYSLACVRCC 1021
Q+P+N V+L V + C K L A +VT LA + CC
Sbjct: 254 IRVIIAVVLVFLACQIPHNMVLLVTAVQLGRM--NRLCHNQKLLAYATNVTEVLAFLHCC 311
Query: 1022 V 1024
+
Sbjct: 312 L 312
>ref|XP_851110.1| PREDICTED: similar to C-C chemokine receptor type 6 (C-C CKR-6)
(CC-CKR-6) (CCR-6) (LARC receptor) (GPR-CY4) (GPRCY4)
(Chemokine receptor-like 3) (CKR-L3) (DRY6) isoform 2
[Canis familiaris].
Length = 376
Score = 206 bits (525), Expect = 2e-53
Identities = 118/301 (39%), Positives = 181/301 (60%), Gaps = 6/301 (1%)
Frame = +2
Query: 140 VTDDYIGD-NTTVDYTLYES--VCFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLTYI 310
+ DD +G N+++DY L + +C ++VR F F+P+ YS+IC GLLGN LV++T+
Sbjct: 14 INDDDLGSGNSSLDYLLDDDSLLCSLQEVREFSELFVPIAYSLICVFGLLGNILVVVTFA 73
Query: 311 YFKRLKTMTDTYLLNLAVADILFLLTLPFWAYS-AAKSWVFGVHVCKLIFGIYKISFFSG 487
++K+ K+MTD YLLN+A+ADILF+LTLPFWA S A W+F CKL+ GIY I+F G
Sbjct: 74 FYKKAKSMTDVYLLNMAIADILFVLTLPFWAVSHATGEWIFSNATCKLMKGIYAINFNCG 133
Query: 488 MLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSGTQ--K 661
MLLL CIS+DRY+AIVQA + R R+R L + C+ +W++++++S +++ +
Sbjct: 134 MLLLTCISMDRYIAIVQATKSFRLRSRTLAHRGIICLVVWVVSVLISGWTFMFNQKYHVQ 193
Query: 662 SSSEQALRCSLITEHVEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARNFERNXX 841
S R + ++ + + Q++ GF IPLV M FCY+ I++TL+QA+N +R+
Sbjct: 194 GSDVCEPRYHEGSNPIKWKLLMLGLQLLFGFFIPLVFMIFCYMFIVKTLVQAQNSKRHKA 253
Query: 842 XXXXXXXXXXXXXXQLPYNGVVLAQTVANFNITSGTSCELNKQLNIAYDVTYSLACVRCC 1021
Q+P+N V+L V + C K L A +VT LA + CC
Sbjct: 254 IRVIIAVVLVFLACQIPHNMVLLVTAVQLGRM--NRLCHNQKLLAYATNVTEVLAFLHCC 311
Query: 1022 V 1024
+
Sbjct: 312 L 312
>ref|NP_001003020.1| C-C chemokine receptor type 4 [Canis lupus familiaris].
Length = 360
Score = 196 bits (498), Expect = 3e-50
Identities = 106/301 (35%), Positives = 176/301 (58%), Gaps = 5/301 (1%)
Frame = +2
Query: 137 EVTDDYIGDNTTVDYTLYESV---CFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLTY 307
++ D + ++ +Y LYE++ C K+ ++ F FLP +YS++ GLLGN +V++
Sbjct: 5 DIADTTLDESIYNNYYLYENIPKPCTKEGIKAFGELFLPPLYSLVFLFGLLGNSVVVVVL 64
Query: 308 IYFKRLKTMTDTYLLNLAVADILFLLTLPFWAYSAAKSWVFGVHVCKLIFGIYKISFFSG 487
+KRLK+MTD YLLNLA++D+LF+L+LPFW Y AA WVFG+ +CK+I +Y + F+SG
Sbjct: 65 FKYKRLKSMTDVYLLNLAISDLLFVLSLPFWGYYAADQWVFGLGLCKIISWMYLVGFYSG 124
Query: 488 MLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSG--TQK 661
+ ++ +SIDRY+AIV AV + RAR L ++ + W +A++ S P LL+S T++
Sbjct: 125 IFFIMLMSIDRYLAIVHAVFS--LRARTLTYGVITSLATWSVAVLASLPGLLFSTCYTER 182
Query: 662 SSSEQALRCSLITEHVEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARNFERNXX 841
+ + + S + + L ++++ ++G +IPL M FCY +IIRTL +N +++
Sbjct: 183 NHTYCKTKYSRNSTRWKVLSSLEI--NILGLVIPLGTMLFCYSMIIRTLQHCKNEKKSKA 240
Query: 842 XXXXXXXXXXXXXXQLPYNGVVLAQTVANFNITSGTSCELNKQLNIAYDVTYSLACVRCC 1021
PYN V+ +T+ + C + L+ A T +LA V CC
Sbjct: 241 VRMVFAVVALFLGFWAPYNVVLFLETLVELEVLQ--DCTFERHLDYAIQATETLAFVHCC 298
Query: 1022 V 1024
+
Sbjct: 299 L 299
>ref|XP_851567.1| PREDICTED: similar to C-C chemokine receptor type 11 (C-C CKR-11)
(CC-CKR-11) (CCR-11) (Chemokine receptor-like 1) (CCRL1)
(CCX CKR) [Canis familiaris].
Length = 350
Score = 194 bits (493), Expect = 1e-49
Identities = 110/308 (35%), Positives = 171/308 (55%), Gaps = 6/308 (1%)
Frame = +2
Query: 119 VCLCQDEVTDDYIGDNT---TVDYTLYESVCFKKDVRTFKAWFLPVMYSIICFVGLLGNG 289
+ L ++ TD Y +N T DY+ YE +C K++VR F FLP ++I G+ GN
Sbjct: 1 MALEHNQSTDYYYEENEVNGTHDYSQYEVICIKEEVRKFAKVFLPAFFTIAFITGIAGNS 60
Query: 290 LVMLTYIYFKRLKTMTDTYLLNLAVADILFLLTLPFWAYSAAKSWVFGVHVCKLIFGIYK 469
+V+ Y Y+K+ +T TD Y+LNLAVAD+L L TLPFWA +A WV G +CK+ +Y
Sbjct: 61 IVVAIYAYYKKQRTKTDVYILNLAVADLLLLFTLPFWAVNAVHGWVLGRIMCKVTSALYT 120
Query: 470 ISFFSGMLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYS 649
++F SGM L CISIDRY A+ +A S ++ V L C +WM A++LS P+L++
Sbjct: 121 VNFVSGMQFLACISIDRYWAVTKAPS----QSGVGRTCWLVCFCVWMTAILLSIPQLVFY 176
Query: 650 GTQKSSSEQALRCSLITEH---VEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQAR 820
+ RC I + +IQ+ ++ +GF+IP + M CY V RTL++
Sbjct: 177 TVNHKA-----RCLPIFPYYLGTSVKASIQMLEICIGFVIPFLIMGVCYFVTARTLIRMP 231
Query: 821 NFERNXXXXXXXXXXXXXXXXQLPYNGVVLAQTVANFNITSGTSCELNKQLNIAYDVTYS 1000
+ +++ QLPYN V L Q V + + T C+++K++++A +T S
Sbjct: 232 DIKKSQPLKVLLTVVIVFMVTQLPYNIVRLCQ-VIDIIYSLITDCDMSKRMDVAIQITES 290
Query: 1001 LACVRCCV 1024
+A C+
Sbjct: 291 IALFHSCL 298
>ref|XP_851891.1| PREDICTED: similar to C-X-C chemokine receptor type 6 (CXC-R6)
(CXCR-6) (G-protein coupled receptor bonzo) (G-protein
coupled receptor STRL33) [Canis familiaris].
Length = 341
Score = 192 bits (488), Expect = 4e-49
Identities = 104/298 (34%), Positives = 174/298 (58%), Gaps = 5/298 (1%)
Frame = +2
Query: 146 DDYIGD---NTTVDYTLYESVCFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLTYIYF 316
DDYI NT+ D S K F +FLP +Y ++ GLLGN LV++ Y+++
Sbjct: 4 DDYIDSEFFNTSSD-----SSEGHKHFLEFHKFFLPCVYVVVFICGLLGNSLVLVIYLFY 58
Query: 317 KRLKTMTDTYLLNLAVADILFLLTLPFWAYSAAKSWVFGVHVCKLIFGIYKISFFSGMLL 496
++LK++TD +L+NL +AD++F+ TLPFWAY++ WVFG +CK + GIY ++F++ ML+
Sbjct: 59 QKLKSLTDVFLMNLPLADLVFVCTLPFWAYASIHEWVFGKVMCKTLLGIYTLNFYTSMLI 118
Query: 497 LLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSGTQKSSSEQ 676
L CI++DR++A+VQA A+ +A+ + K C+ IW++++++S P+++Y K
Sbjct: 119 LTCITMDRFIAVVQATKAYNQQAKRMAWGKAICLLIWVISLLVSLPQIIYG---KVCYLD 175
Query: 677 ALRCSLITEHVEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARNFERNXXXXXXX 856
L C E + ++ QM +GF +PL+AM CY VII+TLL AR F+++
Sbjct: 176 KLICGYHDEDISTVVL--ATQMTLGFFLPLLAMIVCYSVIIKTLLHARGFQKHKSLKIIF 233
Query: 857 XXXXXXXXXQLPYNGVVLAQTV--ANFNITSGTSCELNKQLNIAYDVTYSLACVRCCV 1024
Q P+N V L ++ ++ +TS + A +T ++A +R C+
Sbjct: 234 LVVAVFLLTQTPFNLVKLIRSTRWEHYTMTS---------FHYAIIITEAIAYLRACL 282
>ref|NP_001033695.1| C-C chemokine receptor type 1 [Canis lupus familiaris].
Length = 354
Score = 181 bits (459), Expect = 1e-45
Identities = 103/283 (36%), Positives = 156/283 (55%), Gaps = 4/283 (1%)
Frame = +2
Query: 188 YESV--CFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLTYIYFKRLKTMTDTYLLNLA 361
YE + C K +VRTF A LP +YS++ +GL+GN LV+L + ++RLK+MT YLLNLA
Sbjct: 17 YEGITPCQKGEVRTFGAQLLPPLYSLVFIIGLVGNILVLLVLMQYRRLKSMTSIYLLNLA 76
Query: 362 VADILFLLTLPFWA-YSAAKSWVFGVHVCKLIFGIYKISFFSGMLLLLCISIDRYVAIVQ 538
++D+LFL TLPFW Y W+FG CKL+ G+Y +S +L ++ +++DRY+AIV
Sbjct: 77 ISDLLFLFTLPFWIDYKLKDDWIFGDGTCKLLSGLYYTGLYSEILFIILLTVDRYLAIVH 136
Query: 539 AVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSGTQKSSSEQALRCSLITEHVEAL 718
AV A R R ++ +S +G W+LA++ S P +S TQ+ S E ++A
Sbjct: 137 AVFA--LRVRTVIFGIISSIGAWVLALLASIPGFYFSKTQRELSHTTCSLHFPYEDLKAW 194
Query: 719 ITIQVAQM-VVGFLIPLVAMSFCYLVIIRTLLQARNFERNXXXXXXXXXXXXXXXXQLPY 895
Q ++ ++G ++PL M CY I++ LL+ N ++ PY
Sbjct: 195 KQFQALKLYLLGLVLPLSVMIICYTAIMQILLKRPNEKKAKAVRLIFVIMIVFFLFWTPY 254
Query: 896 NGVVLAQTVANFNITSGTSCELNKQLNIAYDVTYSLACVRCCV 1024
N VL + T C +KQL++A VT +A CCV
Sbjct: 255 NLTVLVSAFQDSLFTD--ECRQSKQLDLAMQVTEVIAYTHCCV 295
>ref|NP_001041491.1| C-X-C chemokine receptor type 4 [Canis lupus familiaris].
Length = 353
Score = 178 bits (452), Expect = 6e-45
Identities = 99/298 (33%), Positives = 164/298 (55%), Gaps = 1/298 (0%)
Frame = +2
Query: 134 DEVTDDYIGDNTTVDYTLYESVCFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLTYIY 313
D T++ +G DY + CF+++ F FLP +YSII G++GNGLV+L Y
Sbjct: 10 DNYTEEDLGSG---DYDSMKEPCFREENAHFNRIFLPTVYSIIFLTGIVGNGLVILVMGY 66
Query: 314 FKRLKTMTDTYLLNLAVADILFLLTLPFWAYSAAKSWVFGVHVCKLIFGIYKISFFSGML 493
K+L++MTD Y L+L+VAD+LF+LTLPFWA A +W FG +CK + IY ++ +S +L
Sbjct: 67 QKKLRSMTDKYRLHLSVADLLFVLTLPFWAVEAVANWYFGNFLCKAVHVIYTVNLYSSVL 126
Query: 494 LLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSGTQKSSSE 673
+L IS+DRY+AIV A ++ R R LL K+ VG+W+ A++L+ P+ +++ +++
Sbjct: 127 ILAFISLDRYLAIVHATNS--QRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVREADDR 184
Query: 674 QALRCSLITEHVEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARNFERNXXXXXX 853
C + L+ Q ++VG ++P + + CY +II L ++ +++
Sbjct: 185 YI--CDRFYPNDSWLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKALKTT 242
Query: 854 XXXXXXXXXXQLPYN-GVVLAQTVANFNITSGTSCELNKQLNIAYDVTYSLACVRCCV 1024
LPY G+ + + I G CE K ++ +T +LA CC+
Sbjct: 243 VILILAFFACWLPYYIGISIDSFILLEIIKQG--CEFEKTVHKWISITEALAFFHCCL 298
>ref|NP_001012342.2| C-C chemokine receptor type 5 [Canis lupus familiaris].
Length = 352
Score = 172 bits (435), Expect = 6e-43
Identities = 102/286 (35%), Positives = 158/286 (55%), Gaps = 2/286 (0%)
Frame = +2
Query: 173 VDYTLYESVCFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLTYIYFKRLKTMTDTYLL 352
+DY E C K +VR A LP +YS++ G +GN LV+L I K+LK+MTD YLL
Sbjct: 12 IDYGTSEP-CQKVNVRQIAARLLPPLYSLVFIFGFVGNVLVVLILIDCKKLKSMTDIYLL 70
Query: 353 NLAVADILFLLTLPFWAYSAAKSWVFGVHVCKLIFGIYKISFFSGMLLLLCISIDRYVAI 532
NLA++D+LFLLT+PFWA+ AA W FG +C+L+ G+Y I FF+G ++ +++DRY+AI
Sbjct: 71 NLAISDLLFLLTIPFWAHYAADQWTFGNKMCQLLTGLYYIGFFTGNFFIILLTMDRYLAI 130
Query: 533 VQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSGTQKSSSEQALRCSLITEHVE 712
V AVSA +AR + ++ W++A++ S P ++++ +QK S
Sbjct: 131 VHAVSA--SKARTVTFGVVTSGIAWVVAVLASFPRIIFTRSQKEGSRFTCSPHFPPSQHH 188
Query: 713 ALITIQVAQM-VVGFLIPLVAMSFCYLVIIRTLLQARN-FERNXXXXXXXXXXXXXXXXQ 886
Q +M V+G ++PL+ M Y I++TLL+ RN +R+
Sbjct: 189 FWKNFQALKMSVLGLILPLLVMIIGYSAILKTLLRCRNEKKRHKAERLIFVIMIVYFLFW 248
Query: 887 LPYNGVVLAQTVANFNITSGTSCELNKQLNIAYDVTYSLACVRCCV 1024
PYN V+L T F +C + +L+ A +T +L CC+
Sbjct: 249 APYNIVLLLSTFQEF--FGLNNCNSSNRLDQAMQITETLGMTHCCI 292
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 25,262,893
Number of extensions: 505425
Number of successful extensions: 2556
Number of sequences better than 1.0e-05: 174
Number of HSP's gapped: 2256
Number of HSP's successfully gapped: 174
Length of query: 341
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 238
Effective length of database: 15,440,896
Effective search space: 3674933248
Effective search space used: 3674933248
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014053
(1025 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001001532.1| C-C chemokine receptor type 7 [Sus scrofa]. 602 e-172
Alignment gi|NP_001001624.1| C-C chemokine receptor type 9 [Sus scrofa]. 219 1e-57
Alignment gi|XP_003362262.1| PREDICTED: c-C chemokine receptor type 6-lik... 211 4e-55
Alignment gi|XP_003361840.1| PREDICTED: c-C chemokine receptor type 4 iso... 198 5e-51
Alignment gi|XP_003361839.1| PREDICTED: c-C chemokine receptor type 4 iso... 198 5e-51
Alignment gi|NP_001090899.1| C-C chemokine receptor type 11 [Sus scrofa]. 198 5e-51
Alignment gi|NP_001001623.1| C-X-C chemokine receptor type 6 [Sus scrofa]. 197 6e-51
Alignment gi|NP_998938.1| C-X-C chemokine receptor type 4 [Sus scrofa]. 177 1e-44
Alignment gi|XP_003358455.1| PREDICTED: c-C chemokine receptor type 5-lik... 174 7e-44
Alignment gi|NP_001001618.1| C-C chemokine receptor type 5 [Sus scrofa]. 174 7e-44
>ref|NP_001001532.1| C-C chemokine receptor type 7 [Sus scrofa].
Length = 380
Score = 602 bits (1552), Expect = e-172
Identities = 306/323 (94%), Positives = 307/323 (95%)
Frame = +2
Query: 56 MDLGKPMKKSLLVVALLVIFQVCLCQDEVTDDYIGDNTTVDYTLYESVCFKKDVRTFKAW 235
MDLGKPMKKSLLVVALLVIFQVCLCQDEVTDDYIGDNTTVDYTLYESVCFKKDVRTFKAW
Sbjct: 1 MDLGKPMKKSLLVVALLVIFQVCLCQDEVTDDYIGDNTTVDYTLYESVCFKKDVRTFKAW 60
Query: 236 FLPVMYSIICFVGLLGNGLVMLTYIYFKRLKTMTDTYLLNLAVADILFLLTLPFWAYSAA 415
FLPVMYSIICFVGLLGNGLVMLTYIYFKRLKTMTDTYLLNLAVADILFLLTLPFWAYSAA
Sbjct: 61 FLPVMYSIICFVGLLGNGLVMLTYIYFKRLKTMTDTYLLNLAVADILFLLTLPFWAYSAA 120
Query: 416 KSWVFGVHVCKLIFGIYKISFFSGMLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSC 595
KSWVFGVHVCKLIFGIYKISFFSGMLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSC
Sbjct: 121 KSWVFGVHVCKLIFGIYKISFFSGMLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSC 180
Query: 596 VGIWMLAMVLSTPELLYSGTQKSSSEQALRCSLITEHVEALITIQVAQMVVGFLIPLVAM 775
VGIWMLAMVLSTPELLYSGTQKSSSEQALRCSLITEHVEALITIQVAQMVVGFLIPLVAM
Sbjct: 181 VGIWMLAMVLSTPELLYSGTQKSSSEQALRCSLITEHVEALITIQVAQMVVGFLIPLVAM 240
Query: 776 SFCYLVIIRTLLQARNFERNXXXXXXXXXXXXXXXXQLPYNGVVLAQTVANFNITSGTSC 955
SFCYLVIIRTLLQARNFERN QLPYNGVVLAQTVANFNITSGTSC
Sbjct: 241 SFCYLVIIRTLLQARNFERNKAIKVIIAVVVVFVAFQLPYNGVVLAQTVANFNITSGTSC 300
Query: 956 ELNKQLNIAYDVTYSLACVRCCV 1024
EL+KQLNIAYDVTYSLACVRCCV
Sbjct: 301 ELSKQLNIAYDVTYSLACVRCCV 323
>ref|NP_001001624.1| C-C chemokine receptor type 9 [Sus scrofa].
Length = 369
Score = 219 bits (559), Expect = 1e-57
Identities = 119/304 (39%), Positives = 180/304 (59%), Gaps = 11/304 (3%)
Frame = +2
Query: 146 DDYIGDNTTV-----DYTLYESVCFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLTYI 310
DDY D T ++T + C K VR F + FLP +Y ++ VG +GN LV+L Y
Sbjct: 15 DDYGYDATPSIEDYGNFTFTDLFCKKNHVRQFASHFLPPLYWLVFIVGAVGNSLVILVYW 74
Query: 311 YFKRLKTMTDTYLLNLAVADILFLLTLPFWAYSAAKSWVFGVHVCKLIFGIYKISFFSGM 490
Y R+KTMTD +LLNLA+AD+LFL+TLPFWA +AA W F +CK++ +YK++F+S +
Sbjct: 75 YCTRVKTMTDMFLLNLAIADLLFLVTLPFWAIAAADQWKFQTFMCKVVNSMYKMNFYSCV 134
Query: 491 LLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSGTQKSSS 670
LL++CIS+DRY+AI QA+ A R + LL SKL C +W++A L PELLYS Q
Sbjct: 135 LLIMCISVDRYIAIAQAMRAQTWRQKRLLYSKLVCFTVWVMAAALCIPELLYS--QVKEE 192
Query: 671 EQALRCSLI------TEHVEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARNFER 832
C+++ T A++T++V ++GF +P V M+ CY +II TL+QA+ +
Sbjct: 193 HDIAICTMVYPSDESTNLKSAVLTLKV---ILGFFLPFVVMACCYTIIIHTLIQAKKSSK 249
Query: 833 NXXXXXXXXXXXXXXXXQLPYNGVVLAQTVANFNITSGTSCELNKQLNIAYDVTYSLACV 1012
+ Q PYN V+L QT+ + + +SC ++ ++I + VT ++A
Sbjct: 250 HKALKVTITVLTVFVLSQFPYNCVLLVQTIDAYTMFI-SSCAVSTNIDICFQVTQTIAFF 308
Query: 1013 RCCV 1024
C+
Sbjct: 309 HSCL 312
>ref|XP_003362262.1| PREDICTED: c-C chemokine receptor type 6-like, partial [Sus scrofa].
Length = 371
Score = 211 bits (538), Expect = 4e-55
Identities = 116/301 (38%), Positives = 175/301 (58%), Gaps = 5/301 (1%)
Frame = +2
Query: 137 EVTDDYIGDNTTVDYTLYES--VCFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLTYI 310
+ ++DY + DY L + +C ++VR F F+P+ YS+IC GLLGN LV++T+
Sbjct: 3 DASEDYFASVNSSDYLLDDESFLCSLQEVRKFSVLFVPLAYSLICVSGLLGNVLVVVTFA 62
Query: 311 YFKRLKTMTDTYLLNLAVADILFLLTLPFWA-YSAAKSWVFGVHVCKLIFGIYKISFFSG 487
++K+ K+MTD YLLN+AVADILF+LTLPFWA + A W+F +CKL GIY ++F G
Sbjct: 63 FYKKAKSMTDVYLLNMAVADILFVLTLPFWAVHHATGEWIFSNAMCKLARGIYAVNFNCG 122
Query: 488 MLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSGTQKSS 667
MLLL CIS+DRY+AIVQA + R R+R L K C+ +W +++++S+ ++ K
Sbjct: 123 MLLLTCISLDRYIAIVQATKSFRLRSRTLAHHKAICLAVWTVSILISSSTFTFNQKYKLQ 182
Query: 668 SEQAL--RCSLITEHVEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARNFERNXX 841
R + E + + + Q++ GF IPLV M FCY+ I++TL+QA+N +R+
Sbjct: 183 GSDVCEPRYHSVAEPLRWKLLVLGLQLLFGFFIPLVFMIFCYMFIVKTLVQAQNSKRHKA 242
Query: 842 XXXXXXXXXXXXXXQLPYNGVVLAQTVANFNITSGTSCELNKQLNIAYDVTYSLACVRCC 1021
Q+P+N +VL T N T SC ++T LA + CC
Sbjct: 243 IRVILAVVLVFLACQIPHN-MVLLVTAVNLGRTD-RSCGSXXXXXXXRNITEVLAFLHCC 300
Query: 1022 V 1024
+
Sbjct: 301 L 301
>ref|XP_003361840.1| PREDICTED: c-C chemokine receptor type 4 isoform 2 [Sus scrofa].
Length = 360
Score = 198 bits (503), Expect = 5e-51
Identities = 107/301 (35%), Positives = 174/301 (57%), Gaps = 5/301 (1%)
Frame = +2
Query: 137 EVTDDYIGDNTTVDYTLYESV---CFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLTY 307
++ D + ++ +Y L+ES+ C K+ ++ F FLP +YS++ GL GN +V+L
Sbjct: 5 DIADTTLDESIYSNYYLFESIPKPCTKEGIKAFGGLFLPPLYSLVFLFGLFGNSVVVLVL 64
Query: 308 IYFKRLKTMTDTYLLNLAVADILFLLTLPFWAYSAAKSWVFGVHVCKLIFGIYKISFFSG 487
+KRLK+MTD YLLNLA++D+LF+L+LPFW Y AA WVFG+ +CKL+ +Y + F+SG
Sbjct: 65 FKYKRLKSMTDVYLLNLAISDLLFVLSLPFWGYYAADQWVFGLGLCKLVSWMYLVGFYSG 124
Query: 488 MLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSG--TQK 661
+ ++ +SIDRY+AIV AV + RAR L ++ + W +A+ S P LL+S T++
Sbjct: 125 IFFIMLMSIDRYLAIVHAVFS--LRARTLTYGVITSLATWSVAVFASLPGLLFSTCYTER 182
Query: 662 SSSEQALRCSLITEHVEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARNFERNXX 841
+ + + S + + L ++++ ++G +IPL M FCY +IIRTL +N ++N
Sbjct: 183 NHTYCKTKYSFNSTRWKVLSSLEI--NILGLVIPLGIMLFCYSMIIRTLQHCKNEKKNKA 240
Query: 842 XXXXXXXXXXXXXXQLPYNGVVLAQTVANFNITSGTSCELNKQLNIAYDVTYSLACVRCC 1021
PYN V+ +T+ + C + L+ A T +LA V CC
Sbjct: 241 VKMIFAVVVLFLGFWTPYNVVLFLETLVELEVLQ--DCTFERHLDYAIQATETLAFVHCC 298
Query: 1022 V 1024
+
Sbjct: 299 L 299
>ref|XP_003361839.1| PREDICTED: c-C chemokine receptor type 4 isoform 1 [Sus scrofa].
Length = 387
Score = 198 bits (503), Expect = 5e-51
Identities = 107/301 (35%), Positives = 174/301 (57%), Gaps = 5/301 (1%)
Frame = +2
Query: 137 EVTDDYIGDNTTVDYTLYESV---CFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLTY 307
++ D + ++ +Y L+ES+ C K+ ++ F FLP +YS++ GL GN +V+L
Sbjct: 32 DIADTTLDESIYSNYYLFESIPKPCTKEGIKAFGGLFLPPLYSLVFLFGLFGNSVVVLVL 91
Query: 308 IYFKRLKTMTDTYLLNLAVADILFLLTLPFWAYSAAKSWVFGVHVCKLIFGIYKISFFSG 487
+KRLK+MTD YLLNLA++D+LF+L+LPFW Y AA WVFG+ +CKL+ +Y + F+SG
Sbjct: 92 FKYKRLKSMTDVYLLNLAISDLLFVLSLPFWGYYAADQWVFGLGLCKLVSWMYLVGFYSG 151
Query: 488 MLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSG--TQK 661
+ ++ +SIDRY+AIV AV + RAR L ++ + W +A+ S P LL+S T++
Sbjct: 152 IFFIMLMSIDRYLAIVHAVFS--LRARTLTYGVITSLATWSVAVFASLPGLLFSTCYTER 209
Query: 662 SSSEQALRCSLITEHVEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARNFERNXX 841
+ + + S + + L ++++ ++G +IPL M FCY +IIRTL +N ++N
Sbjct: 210 NHTYCKTKYSFNSTRWKVLSSLEI--NILGLVIPLGIMLFCYSMIIRTLQHCKNEKKNKA 267
Query: 842 XXXXXXXXXXXXXXQLPYNGVVLAQTVANFNITSGTSCELNKQLNIAYDVTYSLACVRCC 1021
PYN V+ +T+ + C + L+ A T +LA V CC
Sbjct: 268 VKMIFAVVVLFLGFWTPYNVVLFLETLVELEVLQ--DCTFERHLDYAIQATETLAFVHCC 325
Query: 1022 V 1024
+
Sbjct: 326 L 326
>ref|NP_001090899.1| C-C chemokine receptor type 11 [Sus scrofa].
Length = 350
Score = 198 bits (503), Expect = 5e-51
Identities = 112/306 (36%), Positives = 173/306 (56%), Gaps = 4/306 (1%)
Frame = +2
Query: 119 VCLCQDEVTDDYIGDNT---TVDYTLYESVCFKKDVRTFKAWFLPVMYSIICFVGLLGNG 289
+ L ++ TD Y +N T DY+ YE +C K++VR F FLP +++ +GL GN
Sbjct: 1 MALEHNQSTDYYYEENEMNDTHDYSQYEVICIKEEVRKFAKVFLPAFFTVAFIIGLAGNS 60
Query: 290 LVMLTYIYFKRLKTMTDTYLLNLAVADILFLLTLPFWAYSAAKSWVFGVHVCKLIFGIYK 469
+V+ Y Y+K+ +T TD Y+LNLAVAD+L L TLPFWA +A WV G +CK+ +Y
Sbjct: 61 IVVAIYAYYKKQRTKTDVYILNLAVADLLLLFTLPFWAVNAVHGWVLGKIMCKVTSALYT 120
Query: 470 ISFFSGMLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELL-Y 646
++F SGM L CISIDRY A+ + S LLI C +WM A++LS P+L+ Y
Sbjct: 121 VNFVSGMQFLACISIDRYWAVTKGPSQPGVGKLCLLI----CFCVWMAAILLSIPQLVFY 176
Query: 647 SGTQKSSSEQALRCSLITEHVEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARNF 826
+ K+ L T ++AL IQ+ ++ +GF+IP + M CY + RTL++ N
Sbjct: 177 TVNHKARCVPIFPYQLGTS-MKAL--IQMLEICIGFIIPFLIMGVCYFITARTLIKMPNI 233
Query: 827 ERNXXXXXXXXXXXXXXXXQLPYNGVVLAQTVANFNITSGTSCELNKQLNIAYDVTYSLA 1006
+++ QLPYN V L Q + + + T C+++K++++A +T S+A
Sbjct: 234 KKSRPLKVLLTVVLVFIVTQLPYNIVKLCQAI-DIIYSLITDCDMSKRMDVAIQITESIA 292
Query: 1007 CVRCCV 1024
C+
Sbjct: 293 LFHSCL 298
>ref|NP_001001623.1| C-X-C chemokine receptor type 6 [Sus scrofa].
Length = 341
Score = 197 bits (502), Expect = 6e-51
Identities = 103/273 (37%), Positives = 166/273 (60%), Gaps = 1/273 (0%)
Frame = +2
Query: 209 KDVRTFKAWFLPVMYSIICFVGLLGNGLVMLTYIYFKRLKTMTDTYLLNLAVADILFLLT 388
+D R F FLP MY ++ GL+GN LV++ YI++++LK++TD +L+NL +AD++F+ T
Sbjct: 23 QDFRQFSKLFLPCMYVVVFVCGLVGNSLVLVIYIFYQKLKSLTDVFLMNLPLADLVFVCT 82
Query: 389 LPFWAYSAAKSWVFGVHVCKLIFGIYKISFFSGMLLLLCISIDRYVAIVQAVSAHRHRAR 568
LPFWAY+ WVFG +CK++ GIY ++F++ ML+L CI++DR++A+V+A A+ +A+
Sbjct: 83 LPFWAYAGIHEWVFGSIMCKVLLGIYTLNFYTSMLILTCITMDRFIAVVRATKAYNQQAK 142
Query: 569 VLLISKLSCVGIWMLAMVLSTPELLYSGTQKSSSEQALRCSLITEHVEALITIQVA-QMV 745
+ K C+ IWM+ +++S P+++Y L C H A + + +A QM
Sbjct: 143 RMAWGKAICLSIWMVCLLVSLPQIIYGNV---LYHNRLVCGY---HNNATLPMVLATQMT 196
Query: 746 VGFLIPLVAMSFCYLVIIRTLLQARNFERNXXXXXXXXXXXXXXXXQLPYNGVVLAQTVA 925
+GF +PL+AM CY VII+TLLQAR F+++ Q P+N V L ++
Sbjct: 197 LGFFLPLLAMIVCYSVIIKTLLQARGFQKHKSLKIIFLVVAVFLLTQTPFNLVKLIRS-T 255
Query: 926 NFNITSGTSCELNKQLNIAYDVTYSLACVRCCV 1024
N+ S TS A VT ++A +R C+
Sbjct: 256 NWEYHSMTS------FYYAITVTEAIAYLRACL 282
>ref|NP_998938.1| C-X-C chemokine receptor type 4 [Sus scrofa].
Length = 353
Score = 177 bits (448), Expect = 1e-44
Identities = 99/298 (33%), Positives = 162/298 (54%), Gaps = 1/298 (0%)
Frame = +2
Query: 134 DEVTDDYIGDNTTVDYTLYESVCFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLTYIY 313
D T+D +G DY + CF+++ F FLP +YSII G++GNGLV+L Y
Sbjct: 10 DNYTEDDLGSG---DYDSIKEPCFREENAHFNRIFLPTVYSIIFLTGIVGNGLVILVMGY 66
Query: 314 FKRLKTMTDTYLLNLAVADILFLLTLPFWAYSAAKSWVFGVHVCKLIFGIYKISFFSGML 493
K+L++MTD Y L+L+VAD+LF+LTLPFWA A +W FG +CK + IY ++ +S +L
Sbjct: 67 QKKLRSMTDKYRLHLSVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVNLYSSVL 126
Query: 494 LLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSGTQKSSSE 673
+L IS+DRY+AIV A ++ R R LL K+ VG+W+ A++L+ P+ +++ ++
Sbjct: 127 ILAFISLDRYLAIVHATNS--QRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVREGDGR 184
Query: 674 QALRCSLITEHVEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARNFERNXXXXXX 853
C + L+ Q ++VG ++P + + CY +II L ++ +++
Sbjct: 185 YI--CDRFYPNDLWLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKALKTT 242
Query: 854 XXXXXXXXXXQLPYN-GVVLAQTVANFNITSGTSCELNKQLNIAYDVTYSLACVRCCV 1024
LPY G+ + + I G CE ++ +T +LA CC+
Sbjct: 243 VILILAFFACWLPYYIGISIDSFILLEIIQQG--CEFESTVHKWISITEALAFFHCCL 298
>ref|XP_003358455.1| PREDICTED: c-C chemokine receptor type 5-like [Sus scrofa].
Length = 352
Score = 174 bits (441), Expect = 7e-44
Identities = 103/286 (36%), Positives = 158/286 (55%), Gaps = 2/286 (0%)
Frame = +2
Query: 173 VDYTLYESVCFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLTYIYFKRLKTMTDTYLL 352
+DY + E C K +VR A LP +YS++ G +GN LV+L I K+LK+MTD YLL
Sbjct: 12 IDYGMSEP-CQKTNVRQIAARLLPPLYSLVFIFGFVGNLLVVLILINCKKLKSMTDIYLL 70
Query: 353 NLAVADILFLLTLPFWAYSAAKSWVFGVHVCKLIFGIYKISFFSGMLLLLCISIDRYVAI 532
NLA++D+LFL T+PFWA+ AA WVFG +C+ + G Y I FFSG+ ++ ++IDRY+AI
Sbjct: 71 NLAISDLLFLFTIPFWAHYAADQWVFGNTMCQFLTGFYFIGFFSGIFFIILLTIDRYLAI 130
Query: 533 VQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSGTQKSSSEQALRCSLITEHVE 712
V AV A +AR + ++ W++A+ S P ++++ +QK S +
Sbjct: 131 VHAVFA--LKARTVTFGVVTSGVTWVVAIFASLPGIIFTKSQKEGSRYTCSPHFPSSQYH 188
Query: 713 ALITIQVAQMVV-GFLIPLVAMSFCYLVIIRTLLQARN-FERNXXXXXXXXXXXXXXXXQ 886
Q +MV+ G ++PL+ M CY I++TLL+ RN +++
Sbjct: 189 FWKNFQTLKMVILGLVLPLLVMVVCYSGILKTLLRCRNEKKKHKAVRLIFAIMIVYFLFW 248
Query: 887 LPYNGVVLAQTVANFNITSGTSCELNKQLNIAYDVTYSLACVRCCV 1024
PYN V+L T F +C + +L+ A VT +L CC+
Sbjct: 249 APYNIVLLLSTFQEF--FGLNNCSGSNRLDQAMQVTETLGMTHCCI 292
>ref|NP_001001618.1| C-C chemokine receptor type 5 [Sus scrofa].
Length = 352
Score = 174 bits (441), Expect = 7e-44
Identities = 103/286 (36%), Positives = 158/286 (55%), Gaps = 2/286 (0%)
Frame = +2
Query: 173 VDYTLYESVCFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLTYIYFKRLKTMTDTYLL 352
+DY + E C K +VR A LP +YS++ G +GN LV+L I K+LK+MTD YLL
Sbjct: 12 IDYGMSEP-CQKTNVRQIAARLLPPLYSLVFIFGFVGNLLVVLILINCKKLKSMTDIYLL 70
Query: 353 NLAVADILFLLTLPFWAYSAAKSWVFGVHVCKLIFGIYKISFFSGMLLLLCISIDRYVAI 532
NLA++D+LFL T+PFWA+ AA WVFG +C+ + G Y I FFSG+ ++ ++IDRY+AI
Sbjct: 71 NLAISDLLFLFTIPFWAHYAADQWVFGNTMCQFLTGFYFIGFFSGIFFIILLTIDRYLAI 130
Query: 533 VQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSGTQKSSSEQALRCSLITEHVE 712
V AV A +AR + ++ W++A+ S P ++++ +QK S +
Sbjct: 131 VHAVFA--LKARTVTFGVVTSGVTWVVAIFASLPGIIFTKSQKEGSRYTCSPHFPSSQYH 188
Query: 713 ALITIQVAQMVV-GFLIPLVAMSFCYLVIIRTLLQARN-FERNXXXXXXXXXXXXXXXXQ 886
Q +MV+ G ++PL+ M CY I++TLL+ RN +++
Sbjct: 189 FWKNFQTLKMVILGLVLPLLVMVVCYSGILKTLLRCRNEKKKHKAVRLIFAIMIVYFLFW 248
Query: 887 LPYNGVVLAQTVANFNITSGTSCELNKQLNIAYDVTYSLACVRCCV 1024
PYN V+L T F +C + +L+ A VT +L CC+
Sbjct: 249 APYNIVLLLSTFQEF--FGLNNCSGSNRLDQAMQVTETLGMTHCCI 292
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 15,634,949
Number of extensions: 316801
Number of successful extensions: 2435
Number of sequences better than 1.0e-05: 190
Number of HSP's gapped: 2028
Number of HSP's successfully gapped: 190
Length of query: 341
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 241
Effective length of database: 8,854,232
Effective search space: 2133869912
Effective search space used: 2133869912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014053
(1025 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031745.2| C-C chemokine receptor type 7 precursor [Mus mu... 528 e-150
Alignment gi|NP_001160097.1| C-C chemokine receptor type 9 [Mus musculus]. 225 5e-59
Alignment gi|NP_034043.1| C-C chemokine receptor type 9 [Mus musculus]. 225 5e-59
Alignment gi|NP_001177267.1| C-C chemokine receptor type 6 isoform B [Mus... 213 3e-55
Alignment gi|NP_001177266.1| C-C chemokine receptor type 6 isoform A [Mus... 213 3e-55
Alignment gi|NP_001177265.1| C-C chemokine receptor type 6 isoform A [Mus... 213 3e-55
Alignment gi|NP_001177264.1| C-C chemokine receptor type 6 isoform A [Mus... 213 3e-55
Alignment gi|NP_001177263.1| C-C chemokine receptor type 6 isoform A [Mus... 213 3e-55
Alignment gi|NP_001177262.1| C-C chemokine receptor type 6 isoform A [Mus... 213 3e-55
Alignment gi|NP_033965.1| C-C chemokine receptor type 6 isoform A [Mus mu... 213 3e-55
>ref|NP_031745.2| C-C chemokine receptor type 7 precursor [Mus musculus].
Length = 378
Score = 528 bits (1360), Expect = e-150
Identities = 266/323 (82%), Positives = 288/323 (89%)
Frame = +2
Query: 56 MDLGKPMKKSLLVVALLVIFQVCLCQDEVTDDYIGDNTTVDYTLYESVCFKKDVRTFKAW 235
MD GKP +K++LVVALLVIFQVC CQDEVTDDYIG+NTTVDYTLYESVCFKKDVR FKAW
Sbjct: 1 MDPGKP-RKNVLVVALLVIFQVCFCQDEVTDDYIGENTTVDYTLYESVCFKKDVRNFKAW 59
Query: 236 FLPVMYSIICFVGLLGNGLVMLTYIYFKRLKTMTDTYLLNLAVADILFLLTLPFWAYSAA 415
FLP+MYS+ICFVGLLGNGLV+LTYIYFKRLKTMTDTYLLNLAVADILFLL LPFWAYS A
Sbjct: 60 FLPLMYSVICFVGLLGNGLVILTYIYFKRLKTMTDTYLLNLAVADILFLLILPFWAYSEA 119
Query: 416 KSWVFGVHVCKLIFGIYKISFFSGMLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSC 595
KSW+FGV++CK IFGIYK+SFFSGMLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSC
Sbjct: 120 KSWIFGVYLCKGIFGIYKLSFFSGMLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSC 179
Query: 596 VGIWMLAMVLSTPELLYSGTQKSSSEQALRCSLITEHVEALITIQVAQMVVGFLIPLVAM 775
VGIWMLA+ LS PELLYSG QK+S E LRCSL++ VEALITIQVAQMV GFL+P++AM
Sbjct: 180 VGIWMLALFLSIPELLYSGLQKNSGEDTLRCSLVSAQVEALITIQVAQMVFGFLVPMLAM 239
Query: 776 SFCYLVIIRTLLQARNFERNXXXXXXXXXXXXXXXXQLPYNGVVLAQTVANFNITSGTSC 955
SFCYL+IIRTLLQARNFERN QLPYNGVVLAQTVANFNIT+ +SC
Sbjct: 240 SFCYLIIIRTLLQARNFERNKAIKVIIAVVVVFIVFQLPYNGVVLAQTVANFNITN-SSC 298
Query: 956 ELNKQLNIAYDVTYSLACVRCCV 1024
E +KQLNIAYDVTYSLA VRCCV
Sbjct: 299 ETSKQLNIAYDVTYSLASVRCCV 321
>ref|NP_001160097.1| C-C chemokine receptor type 9 [Mus musculus].
Length = 369
Score = 225 bits (573), Expect = 5e-59
Identities = 115/297 (38%), Positives = 183/297 (61%), Gaps = 3/297 (1%)
Frame = +2
Query: 143 TDDYIGDNTTVDYTLYESVCFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLTYIYFKR 322
TDDY+ N + + C K +VR F + FLP +Y ++ VG LGN LV+L Y Y R
Sbjct: 25 TDDYMNLNFSSFF------CKKNNVRQFASHFLPPLYWLVFIVGTLGNSLVILVYWYCTR 78
Query: 323 LKTMTDTYLLNLAVADILFLLTLPFWAYSAAKSWVFGVHVCKLIFGIYKISFFSGMLLLL 502
+KTMTD +LLNLA+AD+LFL TLPFWA +AA W+F +CK++ +YK++F+S +LL++
Sbjct: 79 VKTMTDMFLLNLAIADLLFLATLPFWAIAAAGQWMFQTFMCKVVNSMYKMNFYSCVLLIM 138
Query: 503 CISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSGTQKSSSEQAL 682
CIS+DRY+AIVQA+ A R + LL SK+ C+ IW++A VL TPE+LYS Q S
Sbjct: 139 CISVDRYIAIVQAMKAQVWRQKRLLYSKMVCITIWVMAAVLCTPEILYS--QVSGESGIA 196
Query: 683 RCSLI---TEHVEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARNFERNXXXXXX 853
C+++ ++ + + + ++ +GF +P + M+FCY +II TL+QA+ ++
Sbjct: 197 TCTMVYPKDKNAKLKSAVLILKVTLGFFLPFMVMAFCYTIIIHTLVQAKKSSKHKALKVT 256
Query: 854 XXXXXXXXXXQLPYNGVVLAQTVANFNITSGTSCELNKQLNIAYDVTYSLACVRCCV 1024
Q PYN +++ Q V + + ++C ++ ++I + VT ++A C+
Sbjct: 257 ITVLTVFIMSQFPYNSILVVQAVDAYAMFI-SNCTISTNIDICFQVTQTIAFFHSCL 312
>ref|NP_034043.1| C-C chemokine receptor type 9 [Mus musculus].
Length = 369
Score = 225 bits (573), Expect = 5e-59
Identities = 115/297 (38%), Positives = 183/297 (61%), Gaps = 3/297 (1%)
Frame = +2
Query: 143 TDDYIGDNTTVDYTLYESVCFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLTYIYFKR 322
TDDY+ N + + C K +VR F + FLP +Y ++ VG LGN LV+L Y Y R
Sbjct: 25 TDDYMNLNFSSFF------CKKNNVRQFASHFLPPLYWLVFIVGTLGNSLVILVYWYCTR 78
Query: 323 LKTMTDTYLLNLAVADILFLLTLPFWAYSAAKSWVFGVHVCKLIFGIYKISFFSGMLLLL 502
+KTMTD +LLNLA+AD+LFL TLPFWA +AA W+F +CK++ +YK++F+S +LL++
Sbjct: 79 VKTMTDMFLLNLAIADLLFLATLPFWAIAAAGQWMFQTFMCKVVNSMYKMNFYSCVLLIM 138
Query: 503 CISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSGTQKSSSEQAL 682
CIS+DRY+AIVQA+ A R + LL SK+ C+ IW++A VL TPE+LYS Q S
Sbjct: 139 CISVDRYIAIVQAMKAQVWRQKRLLYSKMVCITIWVMAAVLCTPEILYS--QVSGESGIA 196
Query: 683 RCSLI---TEHVEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARNFERNXXXXXX 853
C+++ ++ + + + ++ +GF +P + M+FCY +II TL+QA+ ++
Sbjct: 197 TCTMVYPKDKNAKLKSAVLILKVTLGFFLPFMVMAFCYTIIIHTLVQAKKSSKHKALKVT 256
Query: 854 XXXXXXXXXXQLPYNGVVLAQTVANFNITSGTSCELNKQLNIAYDVTYSLACVRCCV 1024
Q PYN +++ Q V + + ++C ++ ++I + VT ++A C+
Sbjct: 257 ITVLTVFIMSQFPYNSILVVQAVDAYAMFI-SNCTISTNIDICFQVTQTIAFFHSCL 312
>ref|NP_001177267.1| C-C chemokine receptor type 6 isoform B [Mus musculus].
Length = 408
Score = 213 bits (541), Expect = 3e-55
Identities = 117/303 (38%), Positives = 176/303 (58%), Gaps = 9/303 (2%)
Frame = +2
Query: 143 TDDYIGDNTTVDYTLYESV------CFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLT 304
TDDY D T Y S+ C ++VR F F+P+ YS+IC GLLGN +V++T
Sbjct: 51 TDDY-------DNTEYYSIPPDHGPCSLEEVRNFTKVFVPIAYSLICVFGLLGNIMVVMT 103
Query: 305 YIYFKRLKTMTDTYLLNLAVADILFLLTLPFWAYS-AAKSWVFGVHVCKLIFGIYKISFF 481
+ ++K+ ++MTD YLLN+A+ DILF+LTLPFWA + A +WVF +CKL+ G Y ++F
Sbjct: 104 FAFYKKARSMTDVYLLNMAITDILFVLTLPFWAVTHATNTWVFSDALCKLMKGTYAVNFN 163
Query: 482 SGMLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSGTQK 661
GMLLL CIS+DRY+AIVQA + R R+R L SK+ CV +W +++++S+P +++ +
Sbjct: 164 CGMLLLACISMDRYIAIVQATKSFRVRSRTLTHSKVICVAVWFISIIISSPTFIFNKKYE 223
Query: 662 SSSEQAL--RCSLITEHVEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARNFERN 835
R ++E + + ++ GF PL+ M FCYL II+TL+QA+N +R+
Sbjct: 224 LQDRDVCEPRYRSVSEPITWKLLGMGLELFFGFFTPLLFMVFCYLFIIKTLVQAQNSKRH 283
Query: 836 XXXXXXXXXXXXXXXXQLPYNGVVLAQTVANFNITSGTSCELNKQLNIAYDVTYSLACVR 1015
Q+P+N V+L V + G SC K L +V LA +
Sbjct: 284 RAIRVVIAVVLVFLACQIPHNMVLLVTAVNTGKV--GRSCSTEKVLAYTRNVAEVLAFLH 341
Query: 1016 CCV 1024
CC+
Sbjct: 342 CCL 344
>ref|NP_001177266.1| C-C chemokine receptor type 6 isoform A [Mus musculus].
Length = 367
Score = 213 bits (541), Expect = 3e-55
Identities = 117/303 (38%), Positives = 176/303 (58%), Gaps = 9/303 (2%)
Frame = +2
Query: 143 TDDYIGDNTTVDYTLYESV------CFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLT 304
TDDY D T Y S+ C ++VR F F+P+ YS+IC GLLGN +V++T
Sbjct: 10 TDDY-------DNTEYYSIPPDHGPCSLEEVRNFTKVFVPIAYSLICVFGLLGNIMVVMT 62
Query: 305 YIYFKRLKTMTDTYLLNLAVADILFLLTLPFWAYS-AAKSWVFGVHVCKLIFGIYKISFF 481
+ ++K+ ++MTD YLLN+A+ DILF+LTLPFWA + A +WVF +CKL+ G Y ++F
Sbjct: 63 FAFYKKARSMTDVYLLNMAITDILFVLTLPFWAVTHATNTWVFSDALCKLMKGTYAVNFN 122
Query: 482 SGMLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSGTQK 661
GMLLL CIS+DRY+AIVQA + R R+R L SK+ CV +W +++++S+P +++ +
Sbjct: 123 CGMLLLACISMDRYIAIVQATKSFRVRSRTLTHSKVICVAVWFISIIISSPTFIFNKKYE 182
Query: 662 SSSEQAL--RCSLITEHVEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARNFERN 835
R ++E + + ++ GF PL+ M FCYL II+TL+QA+N +R+
Sbjct: 183 LQDRDVCEPRYRSVSEPITWKLLGMGLELFFGFFTPLLFMVFCYLFIIKTLVQAQNSKRH 242
Query: 836 XXXXXXXXXXXXXXXXQLPYNGVVLAQTVANFNITSGTSCELNKQLNIAYDVTYSLACVR 1015
Q+P+N V+L V + G SC K L +V LA +
Sbjct: 243 RAIRVVIAVVLVFLACQIPHNMVLLVTAVNTGKV--GRSCSTEKVLAYTRNVAEVLAFLH 300
Query: 1016 CCV 1024
CC+
Sbjct: 301 CCL 303
>ref|NP_001177265.1| C-C chemokine receptor type 6 isoform A [Mus musculus].
Length = 367
Score = 213 bits (541), Expect = 3e-55
Identities = 117/303 (38%), Positives = 176/303 (58%), Gaps = 9/303 (2%)
Frame = +2
Query: 143 TDDYIGDNTTVDYTLYESV------CFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLT 304
TDDY D T Y S+ C ++VR F F+P+ YS+IC GLLGN +V++T
Sbjct: 10 TDDY-------DNTEYYSIPPDHGPCSLEEVRNFTKVFVPIAYSLICVFGLLGNIMVVMT 62
Query: 305 YIYFKRLKTMTDTYLLNLAVADILFLLTLPFWAYS-AAKSWVFGVHVCKLIFGIYKISFF 481
+ ++K+ ++MTD YLLN+A+ DILF+LTLPFWA + A +WVF +CKL+ G Y ++F
Sbjct: 63 FAFYKKARSMTDVYLLNMAITDILFVLTLPFWAVTHATNTWVFSDALCKLMKGTYAVNFN 122
Query: 482 SGMLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSGTQK 661
GMLLL CIS+DRY+AIVQA + R R+R L SK+ CV +W +++++S+P +++ +
Sbjct: 123 CGMLLLACISMDRYIAIVQATKSFRVRSRTLTHSKVICVAVWFISIIISSPTFIFNKKYE 182
Query: 662 SSSEQAL--RCSLITEHVEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARNFERN 835
R ++E + + ++ GF PL+ M FCYL II+TL+QA+N +R+
Sbjct: 183 LQDRDVCEPRYRSVSEPITWKLLGMGLELFFGFFTPLLFMVFCYLFIIKTLVQAQNSKRH 242
Query: 836 XXXXXXXXXXXXXXXXQLPYNGVVLAQTVANFNITSGTSCELNKQLNIAYDVTYSLACVR 1015
Q+P+N V+L V + G SC K L +V LA +
Sbjct: 243 RAIRVVIAVVLVFLACQIPHNMVLLVTAVNTGKV--GRSCSTEKVLAYTRNVAEVLAFLH 300
Query: 1016 CCV 1024
CC+
Sbjct: 301 CCL 303
>ref|NP_001177264.1| C-C chemokine receptor type 6 isoform A [Mus musculus].
Length = 367
Score = 213 bits (541), Expect = 3e-55
Identities = 117/303 (38%), Positives = 176/303 (58%), Gaps = 9/303 (2%)
Frame = +2
Query: 143 TDDYIGDNTTVDYTLYESV------CFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLT 304
TDDY D T Y S+ C ++VR F F+P+ YS+IC GLLGN +V++T
Sbjct: 10 TDDY-------DNTEYYSIPPDHGPCSLEEVRNFTKVFVPIAYSLICVFGLLGNIMVVMT 62
Query: 305 YIYFKRLKTMTDTYLLNLAVADILFLLTLPFWAYS-AAKSWVFGVHVCKLIFGIYKISFF 481
+ ++K+ ++MTD YLLN+A+ DILF+LTLPFWA + A +WVF +CKL+ G Y ++F
Sbjct: 63 FAFYKKARSMTDVYLLNMAITDILFVLTLPFWAVTHATNTWVFSDALCKLMKGTYAVNFN 122
Query: 482 SGMLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSGTQK 661
GMLLL CIS+DRY+AIVQA + R R+R L SK+ CV +W +++++S+P +++ +
Sbjct: 123 CGMLLLACISMDRYIAIVQATKSFRVRSRTLTHSKVICVAVWFISIIISSPTFIFNKKYE 182
Query: 662 SSSEQAL--RCSLITEHVEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARNFERN 835
R ++E + + ++ GF PL+ M FCYL II+TL+QA+N +R+
Sbjct: 183 LQDRDVCEPRYRSVSEPITWKLLGMGLELFFGFFTPLLFMVFCYLFIIKTLVQAQNSKRH 242
Query: 836 XXXXXXXXXXXXXXXXQLPYNGVVLAQTVANFNITSGTSCELNKQLNIAYDVTYSLACVR 1015
Q+P+N V+L V + G SC K L +V LA +
Sbjct: 243 RAIRVVIAVVLVFLACQIPHNMVLLVTAVNTGKV--GRSCSTEKVLAYTRNVAEVLAFLH 300
Query: 1016 CCV 1024
CC+
Sbjct: 301 CCL 303
>ref|NP_001177263.1| C-C chemokine receptor type 6 isoform A [Mus musculus].
Length = 367
Score = 213 bits (541), Expect = 3e-55
Identities = 117/303 (38%), Positives = 176/303 (58%), Gaps = 9/303 (2%)
Frame = +2
Query: 143 TDDYIGDNTTVDYTLYESV------CFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLT 304
TDDY D T Y S+ C ++VR F F+P+ YS+IC GLLGN +V++T
Sbjct: 10 TDDY-------DNTEYYSIPPDHGPCSLEEVRNFTKVFVPIAYSLICVFGLLGNIMVVMT 62
Query: 305 YIYFKRLKTMTDTYLLNLAVADILFLLTLPFWAYS-AAKSWVFGVHVCKLIFGIYKISFF 481
+ ++K+ ++MTD YLLN+A+ DILF+LTLPFWA + A +WVF +CKL+ G Y ++F
Sbjct: 63 FAFYKKARSMTDVYLLNMAITDILFVLTLPFWAVTHATNTWVFSDALCKLMKGTYAVNFN 122
Query: 482 SGMLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSGTQK 661
GMLLL CIS+DRY+AIVQA + R R+R L SK+ CV +W +++++S+P +++ +
Sbjct: 123 CGMLLLACISMDRYIAIVQATKSFRVRSRTLTHSKVICVAVWFISIIISSPTFIFNKKYE 182
Query: 662 SSSEQAL--RCSLITEHVEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARNFERN 835
R ++E + + ++ GF PL+ M FCYL II+TL+QA+N +R+
Sbjct: 183 LQDRDVCEPRYRSVSEPITWKLLGMGLELFFGFFTPLLFMVFCYLFIIKTLVQAQNSKRH 242
Query: 836 XXXXXXXXXXXXXXXXQLPYNGVVLAQTVANFNITSGTSCELNKQLNIAYDVTYSLACVR 1015
Q+P+N V+L V + G SC K L +V LA +
Sbjct: 243 RAIRVVIAVVLVFLACQIPHNMVLLVTAVNTGKV--GRSCSTEKVLAYTRNVAEVLAFLH 300
Query: 1016 CCV 1024
CC+
Sbjct: 301 CCL 303
>ref|NP_001177262.1| C-C chemokine receptor type 6 isoform A [Mus musculus].
Length = 367
Score = 213 bits (541), Expect = 3e-55
Identities = 117/303 (38%), Positives = 176/303 (58%), Gaps = 9/303 (2%)
Frame = +2
Query: 143 TDDYIGDNTTVDYTLYESV------CFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLT 304
TDDY D T Y S+ C ++VR F F+P+ YS+IC GLLGN +V++T
Sbjct: 10 TDDY-------DNTEYYSIPPDHGPCSLEEVRNFTKVFVPIAYSLICVFGLLGNIMVVMT 62
Query: 305 YIYFKRLKTMTDTYLLNLAVADILFLLTLPFWAYS-AAKSWVFGVHVCKLIFGIYKISFF 481
+ ++K+ ++MTD YLLN+A+ DILF+LTLPFWA + A +WVF +CKL+ G Y ++F
Sbjct: 63 FAFYKKARSMTDVYLLNMAITDILFVLTLPFWAVTHATNTWVFSDALCKLMKGTYAVNFN 122
Query: 482 SGMLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSGTQK 661
GMLLL CIS+DRY+AIVQA + R R+R L SK+ CV +W +++++S+P +++ +
Sbjct: 123 CGMLLLACISMDRYIAIVQATKSFRVRSRTLTHSKVICVAVWFISIIISSPTFIFNKKYE 182
Query: 662 SSSEQAL--RCSLITEHVEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARNFERN 835
R ++E + + ++ GF PL+ M FCYL II+TL+QA+N +R+
Sbjct: 183 LQDRDVCEPRYRSVSEPITWKLLGMGLELFFGFFTPLLFMVFCYLFIIKTLVQAQNSKRH 242
Query: 836 XXXXXXXXXXXXXXXXQLPYNGVVLAQTVANFNITSGTSCELNKQLNIAYDVTYSLACVR 1015
Q+P+N V+L V + G SC K L +V LA +
Sbjct: 243 RAIRVVIAVVLVFLACQIPHNMVLLVTAVNTGKV--GRSCSTEKVLAYTRNVAEVLAFLH 300
Query: 1016 CCV 1024
CC+
Sbjct: 301 CCL 303
>ref|NP_033965.1| C-C chemokine receptor type 6 isoform A [Mus musculus].
Length = 367
Score = 213 bits (541), Expect = 3e-55
Identities = 117/303 (38%), Positives = 176/303 (58%), Gaps = 9/303 (2%)
Frame = +2
Query: 143 TDDYIGDNTTVDYTLYESV------CFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLT 304
TDDY D T Y S+ C ++VR F F+P+ YS+IC GLLGN +V++T
Sbjct: 10 TDDY-------DNTEYYSIPPDHGPCSLEEVRNFTKVFVPIAYSLICVFGLLGNIMVVMT 62
Query: 305 YIYFKRLKTMTDTYLLNLAVADILFLLTLPFWAYS-AAKSWVFGVHVCKLIFGIYKISFF 481
+ ++K+ ++MTD YLLN+A+ DILF+LTLPFWA + A +WVF +CKL+ G Y ++F
Sbjct: 63 FAFYKKARSMTDVYLLNMAITDILFVLTLPFWAVTHATNTWVFSDALCKLMKGTYAVNFN 122
Query: 482 SGMLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSGTQK 661
GMLLL CIS+DRY+AIVQA + R R+R L SK+ CV +W +++++S+P +++ +
Sbjct: 123 CGMLLLACISMDRYIAIVQATKSFRVRSRTLTHSKVICVAVWFISIIISSPTFIFNKKYE 182
Query: 662 SSSEQAL--RCSLITEHVEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARNFERN 835
R ++E + + ++ GF PL+ M FCYL II+TL+QA+N +R+
Sbjct: 183 LQDRDVCEPRYRSVSEPITWKLLGMGLELFFGFFTPLLFMVFCYLFIIKTLVQAQNSKRH 242
Query: 836 XXXXXXXXXXXXXXXXQLPYNGVVLAQTVANFNITSGTSCELNKQLNIAYDVTYSLACVR 1015
Q+P+N V+L V + G SC K L +V LA +
Sbjct: 243 RAIRVVIAVVLVFLACQIPHNMVLLVTAVNTGKV--GRSCSTEKVLAYTRNVAEVLAFLH 300
Query: 1016 CCV 1024
CC+
Sbjct: 301 CCL 303
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 21,146,888
Number of extensions: 426398
Number of successful extensions: 2894
Number of sequences better than 1.0e-05: 245
Number of HSP's gapped: 2421
Number of HSP's successfully gapped: 245
Length of query: 341
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 239
Effective length of database: 12,553,887
Effective search space: 3000378993
Effective search space used: 3000378993
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014053
(1025 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001829.1| C-C chemokine receptor type 7 precursor [Homo s... 554 e-158
Alignment gi|NP_006632.2| C-C chemokine receptor type 9 isoform B [Homo s... 224 8e-59
Alignment gi|NP_112477.1| C-C chemokine receptor type 9 isoform A [Homo s... 224 8e-59
Alignment gi|NP_004358.2| C-C chemokine receptor type 6 [Homo sapiens]. 213 2e-55
Alignment gi|NP_113597.2| C-C chemokine receptor type 6 [Homo sapiens]. 213 2e-55
Alignment gi|NP_057641.1| C-C chemokine receptor type 11 [Homo sapiens]. 200 2e-51
Alignment gi|NP_848540.1| C-C chemokine receptor type 11 [Homo sapiens]. 200 2e-51
Alignment gi|NP_005499.1| C-C chemokine receptor type 4 [Homo sapiens]. 195 5e-50
Alignment gi|NP_001116868.1| C-C chemokine receptor type 2 isoform B [Hom... 177 1e-44
Alignment gi|NP_001116513.2| C-C chemokine receptor type 2 isoform A [Hom... 177 1e-44
>ref|NP_001829.1| C-C chemokine receptor type 7 precursor [Homo sapiens].
Length = 378
Score = 554 bits (1428), Expect = e-158
Identities = 282/323 (87%), Positives = 295/323 (91%)
Frame = +2
Query: 56 MDLGKPMKKSLLVVALLVIFQVCLCQDEVTDDYIGDNTTVDYTLYESVCFKKDVRTFKAW 235
MDLGKPMK S+LVVALLVIFQVCLCQDEVTDDYIGDNTTVDYTL+ES+C KKDVR FKAW
Sbjct: 1 MDLGKPMK-SVLVVALLVIFQVCLCQDEVTDDYIGDNTTVDYTLFESLCSKKDVRNFKAW 59
Query: 236 FLPVMYSIICFVGLLGNGLVMLTYIYFKRLKTMTDTYLLNLAVADILFLLTLPFWAYSAA 415
FLP+MYSIICFVGLLGNGLV+LTYIYFKRLKTMTDTYLLNLAVADILFLLTLPFWAYSAA
Sbjct: 60 FLPIMYSIICFVGLLGNGLVVLTYIYFKRLKTMTDTYLLNLAVADILFLLTLPFWAYSAA 119
Query: 416 KSWVFGVHVCKLIFGIYKISFFSGMLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSC 595
KSWVFGVH CKLIF IYK+SFFSGMLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSC
Sbjct: 120 KSWVFGVHFCKLIFAIYKMSFFSGMLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSC 179
Query: 596 VGIWMLAMVLSTPELLYSGTQKSSSEQALRCSLITEHVEALITIQVAQMVVGFLIPLVAM 775
VGIW+LA VLS PELLYS Q+SSSEQA+RCSLITEHVEA ITIQVAQMV+GFL+PL+AM
Sbjct: 180 VGIWILATVLSIPELLYSDLQRSSSEQAMRCSLITEHVEAFITIQVAQMVIGFLVPLLAM 239
Query: 776 SFCYLVIIRTLLQARNFERNXXXXXXXXXXXXXXXXQLPYNGVVLAQTVANFNITSGTSC 955
SFCYLVIIRTLLQARNFERN QLPYNGVVLAQTVANFNITS T C
Sbjct: 240 SFCYLVIIRTLLQARNFERNKAIKVIIAVVVVFIVFQLPYNGVVLAQTVANFNITSST-C 298
Query: 956 ELNKQLNIAYDVTYSLACVRCCV 1024
EL+KQLNIAYDVTYSLACVRCCV
Sbjct: 299 ELSKQLNIAYDVTYSLACVRCCV 321
>ref|NP_006632.2| C-C chemokine receptor type 9 isoform B [Homo sapiens].
Length = 357
Score = 224 bits (572), Expect = 8e-59
Identities = 118/306 (38%), Positives = 188/306 (61%), Gaps = 11/306 (3%)
Frame = +2
Query: 140 VTDDYIGDNTT-----VDYTLYESVCFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLT 304
+ DDY ++T+ V++ + C K +VR F + FLP +Y ++ VG LGN LV+L
Sbjct: 1 MADDYGSESTSSMEDYVNFNFTDFYCEKNNVRQFASHFLPPLYWLVFIVGALGNSLVILV 60
Query: 305 YIYFKRLKTMTDTYLLNLAVADILFLLTLPFWAYSAAKSWVFGVHVCKLIFGIYKISFFS 484
Y Y R+KTMTD +LLNLA+AD+LFL+TLPFWA +AA W F +CK++ +YK++F+S
Sbjct: 61 YWYCTRVKTMTDMFLLNLAIADLLFLVTLPFWAIAAADQWKFQTFMCKVVNSMYKMNFYS 120
Query: 485 GMLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSGTQKS 664
+LL++CIS+DRY+AI QA+ AH R + LL SK+ C IW+LA L PE+LYS ++
Sbjct: 121 CVLLIMCISVDRYIAIAQAMRAHTWREKRLLYSKMVCFTIWVLAAALCIPEILYSQIKEE 180
Query: 665 SSEQALRCSLI------TEHVEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARNF 826
S C+++ T+ A++T++V ++GF +P V M+ CY +II TL+QA+
Sbjct: 181 SG--IAICTMVYPSDESTKLKSAVLTLKV---ILGFFLPFVVMACCYTIIIHTLIQAKKS 235
Query: 827 ERNXXXXXXXXXXXXXXXXQLPYNGVVLAQTVANFNITSGTSCELNKQLNIAYDVTYSLA 1006
++ Q PYN ++L QT+ + + ++C ++ ++I + VT ++A
Sbjct: 236 SKHKALKVTITVLTVFVLSQFPYNCILLVQTIDAYAMFI-SNCAVSTNIDICFQVTQTIA 294
Query: 1007 CVRCCV 1024
C+
Sbjct: 295 FFHSCL 300
>ref|NP_112477.1| C-C chemokine receptor type 9 isoform A [Homo sapiens].
Length = 369
Score = 224 bits (572), Expect = 8e-59
Identities = 118/306 (38%), Positives = 188/306 (61%), Gaps = 11/306 (3%)
Frame = +2
Query: 140 VTDDYIGDNTT-----VDYTLYESVCFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLT 304
+ DDY ++T+ V++ + C K +VR F + FLP +Y ++ VG LGN LV+L
Sbjct: 13 MADDYGSESTSSMEDYVNFNFTDFYCEKNNVRQFASHFLPPLYWLVFIVGALGNSLVILV 72
Query: 305 YIYFKRLKTMTDTYLLNLAVADILFLLTLPFWAYSAAKSWVFGVHVCKLIFGIYKISFFS 484
Y Y R+KTMTD +LLNLA+AD+LFL+TLPFWA +AA W F +CK++ +YK++F+S
Sbjct: 73 YWYCTRVKTMTDMFLLNLAIADLLFLVTLPFWAIAAADQWKFQTFMCKVVNSMYKMNFYS 132
Query: 485 GMLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSGTQKS 664
+LL++CIS+DRY+AI QA+ AH R + LL SK+ C IW+LA L PE+LYS ++
Sbjct: 133 CVLLIMCISVDRYIAIAQAMRAHTWREKRLLYSKMVCFTIWVLAAALCIPEILYSQIKEE 192
Query: 665 SSEQALRCSLI------TEHVEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARNF 826
S C+++ T+ A++T++V ++GF +P V M+ CY +II TL+QA+
Sbjct: 193 SG--IAICTMVYPSDESTKLKSAVLTLKV---ILGFFLPFVVMACCYTIIIHTLIQAKKS 247
Query: 827 ERNXXXXXXXXXXXXXXXXQLPYNGVVLAQTVANFNITSGTSCELNKQLNIAYDVTYSLA 1006
++ Q PYN ++L QT+ + + ++C ++ ++I + VT ++A
Sbjct: 248 SKHKALKVTITVLTVFVLSQFPYNCILLVQTIDAYAMFI-SNCAVSTNIDICFQVTQTIA 306
Query: 1007 CVRCCV 1024
C+
Sbjct: 307 FFHSCL 312
>ref|NP_004358.2| C-C chemokine receptor type 6 [Homo sapiens].
Length = 374
Score = 213 bits (542), Expect = 2e-55
Identities = 119/301 (39%), Positives = 184/301 (61%), Gaps = 7/301 (2%)
Frame = +2
Query: 143 TDDYIGDNTTVDYTLYESV--CFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLTYIYF 316
++DY T Y++ + C ++VR F F+P+ YS+IC GLLGN LV++T+ ++
Sbjct: 15 SEDYFVSVNTSYYSVDSEMLLCSLQEVRQFSRLFVPIAYSLICVFGLLGNILVVITFAFY 74
Query: 317 KRLKTMTDTYLLNLAVADILFLLTLPFWAYS-AAKSWVFGVHVCKLIFGIYKISFFSGML 493
K+ ++MTD YLLN+A+ADILF+LTLPFWA S A +WVF CKL+ GIY I+F GML
Sbjct: 75 KKARSMTDVYLLNMAIADILFVLTLPFWAVSHATGAWVFSNATCKLLKGIYAINFNCGML 134
Query: 494 LLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSGTQKSSSE 673
LL CIS+DRY+AIVQA + R R+R L SK+ C+ +W L++++S+ +++ QK +++
Sbjct: 135 LLTCISMDRYIAIVQATKSFRLRSRTLPRSKIICLVVWGLSVIISSSTFVFN--QKYNTQ 192
Query: 674 QALRC----SLITEHVEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARNFERNXX 841
+ C ++E + + + +++ GF IPL+ M FCY I++TL+QA+N +R+
Sbjct: 193 GSDVCEPKYQTVSEPIRWKLLMLGLELLFGFFIPLMFMIFCYTFIVKTLVQAQNSKRHKA 252
Query: 842 XXXXXXXXXXXXXXQLPYNGVVLAQTVANFNITSGTSCELNKQLNIAYDVTYSLACVRCC 1021
Q+P+N +VL T AN SC+ K + VT LA + CC
Sbjct: 253 IRVIIAVVLVFLACQIPHN-MVLLVTAANLG-KMNRSCQSEKLIGYTKTVTEVLAFLHCC 310
Query: 1022 V 1024
+
Sbjct: 311 L 311
>ref|NP_113597.2| C-C chemokine receptor type 6 [Homo sapiens].
Length = 374
Score = 213 bits (542), Expect = 2e-55
Identities = 119/301 (39%), Positives = 184/301 (61%), Gaps = 7/301 (2%)
Frame = +2
Query: 143 TDDYIGDNTTVDYTLYESV--CFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLTYIYF 316
++DY T Y++ + C ++VR F F+P+ YS+IC GLLGN LV++T+ ++
Sbjct: 15 SEDYFVSVNTSYYSVDSEMLLCSLQEVRQFSRLFVPIAYSLICVFGLLGNILVVITFAFY 74
Query: 317 KRLKTMTDTYLLNLAVADILFLLTLPFWAYS-AAKSWVFGVHVCKLIFGIYKISFFSGML 493
K+ ++MTD YLLN+A+ADILF+LTLPFWA S A +WVF CKL+ GIY I+F GML
Sbjct: 75 KKARSMTDVYLLNMAIADILFVLTLPFWAVSHATGAWVFSNATCKLLKGIYAINFNCGML 134
Query: 494 LLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSGTQKSSSE 673
LL CIS+DRY+AIVQA + R R+R L SK+ C+ +W L++++S+ +++ QK +++
Sbjct: 135 LLTCISMDRYIAIVQATKSFRLRSRTLPRSKIICLVVWGLSVIISSSTFVFN--QKYNTQ 192
Query: 674 QALRC----SLITEHVEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARNFERNXX 841
+ C ++E + + + +++ GF IPL+ M FCY I++TL+QA+N +R+
Sbjct: 193 GSDVCEPKYQTVSEPIRWKLLMLGLELLFGFFIPLMFMIFCYTFIVKTLVQAQNSKRHKA 252
Query: 842 XXXXXXXXXXXXXXQLPYNGVVLAQTVANFNITSGTSCELNKQLNIAYDVTYSLACVRCC 1021
Q+P+N +VL T AN SC+ K + VT LA + CC
Sbjct: 253 IRVIIAVVLVFLACQIPHN-MVLLVTAANLG-KMNRSCQSEKLIGYTKTVTEVLAFLHCC 310
Query: 1022 V 1024
+
Sbjct: 311 L 311
>ref|NP_057641.1| C-C chemokine receptor type 11 [Homo sapiens].
Length = 350
Score = 200 bits (508), Expect = 2e-51
Identities = 111/305 (36%), Positives = 174/305 (57%), Gaps = 3/305 (0%)
Frame = +2
Query: 119 VCLCQDEVTDDYIGDNT---TVDYTLYESVCFKKDVRTFKAWFLPVMYSIICFVGLLGNG 289
+ L Q++ TD Y +N T DY+ YE +C K+DVR F FLPV +I+ +GL GN
Sbjct: 1 MALEQNQSTDYYYEENEMNGTYDYSQYELICIKEDVREFAKVFLPVFLTIVFVIGLAGNS 60
Query: 290 LVMLTYIYFKRLKTMTDTYLLNLAVADILFLLTLPFWAYSAAKSWVFGVHVCKLIFGIYK 469
+V+ Y Y+K+ +T TD Y+LNLAVAD+L L TLPFWA +A WV G +CK+ +Y
Sbjct: 61 MVVAIYAYYKKQRTKTDVYILNLAVADLLLLFTLPFWAVNAVHGWVLGKIMCKITSALYT 120
Query: 470 ISFFSGMLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYS 649
++F SGM L CISIDRYVA+ + S ++ V + C +WM A++LS P+L++
Sbjct: 121 LNFVSGMQFLACISIDRYVAVTKVPS----QSGVGKPCWIICFCVWMAAILLSIPQLVFY 176
Query: 650 GTQKSSSEQALRCSLITEHVEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARNFE 829
++ + + ++AL IQ+ ++ +GF++P + M CY + RTL++ N +
Sbjct: 177 TVNDNARCIPIFPRYLGTSMKAL--IQMLEICIGFVVPFLIMGVCYFITARTLMKMPNIK 234
Query: 830 RNXXXXXXXXXXXXXXXXQLPYNGVVLAQTVANFNITSGTSCELNKQLNIAYDVTYSLAC 1009
+ QLPYN V + + + + TSC ++K+++IA VT S+A
Sbjct: 235 ISRPLKVLLTVVIVFIVTQLPYNIVKFCRAI-DIIYSLITSCNMSKRMDIAIQVTESIAL 293
Query: 1010 VRCCV 1024
C+
Sbjct: 294 FHSCL 298
>ref|NP_848540.1| C-C chemokine receptor type 11 [Homo sapiens].
Length = 350
Score = 200 bits (508), Expect = 2e-51
Identities = 111/305 (36%), Positives = 174/305 (57%), Gaps = 3/305 (0%)
Frame = +2
Query: 119 VCLCQDEVTDDYIGDNT---TVDYTLYESVCFKKDVRTFKAWFLPVMYSIICFVGLLGNG 289
+ L Q++ TD Y +N T DY+ YE +C K+DVR F FLPV +I+ +GL GN
Sbjct: 1 MALEQNQSTDYYYEENEMNGTYDYSQYELICIKEDVREFAKVFLPVFLTIVFVIGLAGNS 60
Query: 290 LVMLTYIYFKRLKTMTDTYLLNLAVADILFLLTLPFWAYSAAKSWVFGVHVCKLIFGIYK 469
+V+ Y Y+K+ +T TD Y+LNLAVAD+L L TLPFWA +A WV G +CK+ +Y
Sbjct: 61 MVVAIYAYYKKQRTKTDVYILNLAVADLLLLFTLPFWAVNAVHGWVLGKIMCKITSALYT 120
Query: 470 ISFFSGMLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYS 649
++F SGM L CISIDRYVA+ + S ++ V + C +WM A++LS P+L++
Sbjct: 121 LNFVSGMQFLACISIDRYVAVTKVPS----QSGVGKPCWIICFCVWMAAILLSIPQLVFY 176
Query: 650 GTQKSSSEQALRCSLITEHVEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARNFE 829
++ + + ++AL IQ+ ++ +GF++P + M CY + RTL++ N +
Sbjct: 177 TVNDNARCIPIFPRYLGTSMKAL--IQMLEICIGFVVPFLIMGVCYFITARTLMKMPNIK 234
Query: 830 RNXXXXXXXXXXXXXXXXQLPYNGVVLAQTVANFNITSGTSCELNKQLNIAYDVTYSLAC 1009
+ QLPYN V + + + + TSC ++K+++IA VT S+A
Sbjct: 235 ISRPLKVLLTVVIVFIVTQLPYNIVKFCRAI-DIIYSLITSCNMSKRMDIAIQVTESIAL 293
Query: 1010 VRCCV 1024
C+
Sbjct: 294 FHSCL 298
>ref|NP_005499.1| C-C chemokine receptor type 4 [Homo sapiens].
Length = 360
Score = 195 bits (496), Expect = 5e-50
Identities = 107/301 (35%), Positives = 174/301 (57%), Gaps = 5/301 (1%)
Frame = +2
Query: 137 EVTDDYIGDNTTVDYTLYESV---CFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLTY 307
++ D + ++ +Y LYES+ C K+ ++ F FLP +YS++ GLLGN +V+L
Sbjct: 5 DIADTTLDESIYSNYYLYESIPKPCTKEGIKAFGELFLPPLYSLVFVFGLLGNSVVVLVL 64
Query: 308 IYFKRLKTMTDTYLLNLAVADILFLLTLPFWAYSAAKSWVFGVHVCKLIFGIYKISFFSG 487
+KRL++MTD YLLNLA++D+LF+ +LPFW Y AA WVFG+ +CK+I +Y + F+SG
Sbjct: 65 FKYKRLRSMTDVYLLNLAISDLLFVFSLPFWGYYAADQWVFGLGLCKMISWMYLVGFYSG 124
Query: 488 MLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSG--TQK 661
+ ++ +SIDRY+AIV AV + RAR L ++ + W +A+ S P L+S T++
Sbjct: 125 IFFVMLMSIDRYLAIVHAVFS--LRARTLTYGVITSLATWSVAVFASLPGFLFSTCYTER 182
Query: 662 SSSEQALRCSLITEHVEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARNFERNXX 841
+ + + SL + + L ++++ ++G +IPL M FCY +IIRTL +N ++N
Sbjct: 183 NHTYCKTKYSLNSTTWKVLSSLEI--NILGLVIPLGIMLFCYSMIIRTLQHCKNEKKNKA 240
Query: 842 XXXXXXXXXXXXXXQLPYNGVVLAQTVANFNITSGTSCELNKQLNIAYDVTYSLACVRCC 1021
PYN V+ +T+ + C + L+ A T +LA V CC
Sbjct: 241 VKMIFAVVVLFLGFWTPYNIVLFLETLVELEVLQ--DCTFERYLDYAIQATETLAFVHCC 298
Query: 1022 V 1024
+
Sbjct: 299 L 299
>ref|NP_001116868.1| C-C chemokine receptor type 2 isoform B [Homo sapiens].
Length = 360
Score = 177 bits (449), Expect = 1e-44
Identities = 108/287 (37%), Positives = 158/287 (55%), Gaps = 1/287 (0%)
Frame = +2
Query: 167 TTVDYTLYESVCFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLTYIYFKRLKTMTDTY 346
T DY Y + C K DV+ A LP +YS++ G +GN LV+L I K+LK +TD Y
Sbjct: 22 TFFDYD-YGAPCHKFDVKQIGAQLLPPLYSLVFIFGFVGNMLVVLILINCKKLKCLTDIY 80
Query: 347 LLNLAVADILFLLTLPFWAYSAAKSWVFGVHVCKLIFGIYKISFFSGMLLLLCISIDRYV 526
LLNLA++D+LFL+TLP WA+SAA WVFG +CKL G+Y I +F G+ ++ ++IDRY+
Sbjct: 81 LLNLAISDLLFLITLPLWAHSAANEWVFGNAMCKLFTGLYHIGYFGGIFFIILLTIDRYL 140
Query: 527 AIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSGTQKSSSEQALRCSLITEH 706
AIV AV A +AR + ++ V W++A+ S P ++++ QK S
Sbjct: 141 AIVHAVFA--LKARTVTFGVVTSVITWLVAVFASVPGIIFTKCQKEDSVYVCG-PYFPRG 197
Query: 707 VEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARN-FERNXXXXXXXXXXXXXXXX 883
TI + ++G ++PL+ M CY I++TLL+ RN +R+
Sbjct: 198 WNNFHTIM--RNILGLVLPLLIMVICYSGILKTLLRCRNEKKRHRAVRVIFTIMIVYFLF 255
Query: 884 QLPYNGVVLAQTVANFNITSGTSCELNKQLNIAYDVTYSLACVRCCV 1024
PYN V+L T F S +CE QL+ A VT +L CC+
Sbjct: 256 WTPYNIVILLNTFQEFFGLS--NCESTSQLDQATQVTETLGMTHCCI 300
>ref|NP_001116513.2| C-C chemokine receptor type 2 isoform A [Homo sapiens].
Length = 374
Score = 177 bits (449), Expect = 1e-44
Identities = 108/287 (37%), Positives = 158/287 (55%), Gaps = 1/287 (0%)
Frame = +2
Query: 167 TTVDYTLYESVCFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLTYIYFKRLKTMTDTY 346
T DY Y + C K DV+ A LP +YS++ G +GN LV+L I K+LK +TD Y
Sbjct: 22 TFFDYD-YGAPCHKFDVKQIGAQLLPPLYSLVFIFGFVGNMLVVLILINCKKLKCLTDIY 80
Query: 347 LLNLAVADILFLLTLPFWAYSAAKSWVFGVHVCKLIFGIYKISFFSGMLLLLCISIDRYV 526
LLNLA++D+LFL+TLP WA+SAA WVFG +CKL G+Y I +F G+ ++ ++IDRY+
Sbjct: 81 LLNLAISDLLFLITLPLWAHSAANEWVFGNAMCKLFTGLYHIGYFGGIFFIILLTIDRYL 140
Query: 527 AIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSGTQKSSSEQALRCSLITEH 706
AIV AV A +AR + ++ V W++A+ S P ++++ QK S
Sbjct: 141 AIVHAVFA--LKARTVTFGVVTSVITWLVAVFASVPGIIFTKCQKEDSVYVCG-PYFPRG 197
Query: 707 VEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARN-FERNXXXXXXXXXXXXXXXX 883
TI + ++G ++PL+ M CY I++TLL+ RN +R+
Sbjct: 198 WNNFHTIM--RNILGLVLPLLIMVICYSGILKTLLRCRNEKKRHRAVRVIFTIMIVYFLF 255
Query: 884 QLPYNGVVLAQTVANFNITSGTSCELNKQLNIAYDVTYSLACVRCCV 1024
PYN V+L T F S +CE QL+ A VT +L CC+
Sbjct: 256 WTPYNIVILLNTFQEFFGLS--NCESTSQLDQATQVTETLGMTHCCI 300
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 24,811,357
Number of extensions: 499357
Number of successful extensions: 2845
Number of sequences better than 1.0e-05: 299
Number of HSP's gapped: 2303
Number of HSP's successfully gapped: 299
Length of query: 341
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 238
Effective length of database: 14,901,872
Effective search space: 3546645536
Effective search space used: 3546645536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014053
(1025 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 1788 0.0
>Sscrofa_Chr12
|| Length = 63588571
Score = 1788 bits (902), Expect = 0.0
Identities = 908/910 (99%)
Strand = Plus / Plus
Query: 116 caggtgtgcctgtgccaggatgaggtcacggacgactacatcggcgacaacaccacggtg 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22150103 caggtgtgcctgtgccaggatgaggtcacggacgactacatcggcgacaacaccacggtg 22150162
Query: 176 gactacacgctgtacgagtccgtgtgcttcaagaaggacgtgcggacctttaaggcctgg 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22150163 gactacacgctgtacgagtccgtgtgcttcaagaaggacgtgcggacctttaaggcctgg 22150222
Query: 236 ttcctcccggtcatgtactccatcatctgcttcgtgggcctgctgggcaacgggctggtc 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22150223 ttcctcccggtcatgtactccatcatctgcttcgtgggcctgctgggcaacgggctggtc 22150282
Query: 296 atgctgacctacatctatttcaagaggctcaagaccatgaccgacacgtacctgctcaac 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22150283 atgctgacctacatctatttcaagaggctcaagaccatgaccgacacgtacctgctcaac 22150342
Query: 356 ttggccgtggccgacatcctcttcctcctgacccttcccttctgggcatacagcgcggcc 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22150343 ttggccgtggccgacatcctcttcctcctgacccttcccttctgggcatacagcgcggcc 22150402
Query: 416 aagtcctgggtcttcggagtccacgtctgcaaactcatcttcggcatctacaagatcagc 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22150403 aagtcctgggtcttcggagtccacgtctgcaaactcatcttcggcatctacaagatcagc 22150462
Query: 476 ttcttcagcggcatgcttctgcttctctgcatcagcatcgaccgctacgtggccatcgtg 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22150463 ttcttcagcggcatgcttctgcttctctgcatcagcatcgaccgctacgtggccatcgtg 22150522
Query: 536 caggccgtgtcggcgcaccgccaccgcgcccgcgtgcttctcatcagcaagctctcctgc 595
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 22150523 caggccgtgtcggcgcaccgccaccgtgcccgcgtgcttctcatcagcaagctctcctgc 22150582
Query: 596 gtgggcatctggatgctggccatggtgctgtccacgccggagctgctgtacagcggcacc 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22150583 gtgggcatctggatgctggccatggtgctgtccacgccggagctgctgtacagcggcacc 22150642
Query: 656 cagaagagcagcagcgagcaggcgctccggtgctccctcatcaccgagcacgtggaggcc 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22150643 cagaagagcagcagcgagcaggcgctccggtgctccctcatcaccgagcacgtggaggcc 22150702
Query: 716 ctgatcaccatccaggtggcccagatggtggtgggctttctgatccccctggtggccatg 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22150703 ctgatcaccatccaggtggcccagatggtggtgggctttctgatccccctggtggccatg 22150762
Query: 776 agcttctgctacctcgtcatcatccgcaccctgctccaggcgcgcaacttcgagcgcaac 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22150763 agcttctgctacctcgtcatcatccgcaccctgctccaggcgcgcaacttcgagcgcaac 22150822
Query: 836 aaggccatcaaggtgatcatcgccgtggtcgtggtcttcgtggccttccagctgccctac 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22150823 aaggccatcaaggtgatcatcgccgtggtcgtggtcttcgtggccttccagctgccctac 22150882
Query: 896 aacggcgtggtcctggcccagacggtggccaatttcaacatcaccagcggcaccagctgc 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22150883 aacggcgtggtcctggcccagacggtggccaatttcaacatcaccagcggcaccagctgc 22150942
Query: 956 gagctcaacaagcagctcaacatcgcctacgacgtcacctacagcctggcgtgcgtccgc 1015
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22150943 gagctcagcaagcagctcaacatcgcctacgacgtcacctacagcctggcgtgcgtccgc 22151002
Query: 1016 tgctgcgtca 1025
||||||||||
Sbjct: 22151003 tgctgcgtca 22151012
Score = 125 bits (63), Expect = 5e-26
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 4 agacagaggcccggcacaaccttcctgtgtggtttcagcagccaagagtgacatggacct 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22140214 agacagaggcccggcacaaccttcctgtgtggtttcagcagccaagagtgacatggacct 22140273
Query: 64 ggg 66
|||
Sbjct: 22140274 ggg 22140276
Score = 113 bits (57), Expect = 2e-22
Identities = 57/57 (100%)
Strand = Plus / Plus
Query: 65 gggaagcctatgaagaagagcctgctggtggtggctctccttgtcattttccaggtg 121
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22146952 gggaagcctatgaagaagagcctgctggtggtggctctccttgtcattttccaggtg 22147008
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,571,209
Number of extensions: 242
Number of successful extensions: 242
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 3
Length of query: 1025
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1004
Effective length of database: 2,808,413,156
Effective search space: 2819646808624
Effective search space used: 2819646808624
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)