Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014071
(1617 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531760.2| PREDICTED: similar to DNA-directed RNA polymera... 1054 0.0
Alignment gi|XP_861044.1| PREDICTED: similar to DNA-directed RNA polymera... 416 e-116
Alignment gi|XP_861018.1| PREDICTED: similar to DNA-directed RNA polymera... 416 e-116
Alignment gi|XP_860963.1| PREDICTED: similar to DNA-directed RNA polymera... 416 e-116
Alignment gi|XP_860899.1| PREDICTED: similar to DNA-directed RNA polymera... 416 e-116
Alignment gi|XP_860838.1| PREDICTED: similar to DNA-directed RNA polymera... 416 e-116
Alignment gi|XP_860737.1| PREDICTED: similar to DNA-directed RNA polymera... 416 e-116
Alignment gi|XP_532382.2| PREDICTED: similar to DNA-directed RNA polymera... 416 e-116
Alignment gi|XP_860990.1| PREDICTED: similar to DNA-directed RNA polymera... 414 e-115
Alignment gi|XP_860930.1| PREDICTED: similar to DNA-directed RNA polymera... 414 e-115
>ref|XP_531760.2| PREDICTED: similar to DNA-directed RNA polymerase III subunit 127.6
kDa polypeptide (RNA polymerase III subunit 2) (RPC2)
[Canis familiaris].
Length = 1133
Score = 1054 bits (2726), Expect = 0.0
Identities = 510/519 (98%), Positives = 515/519 (99%)
Frame = +3
Query: 57 AQEAARVPRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL 236
+ + R+ RPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL
Sbjct: 586 SSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL 645
Query: 237 YEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRI 416
YEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRI
Sbjct: 646 YEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRI 705
Query: 417 DTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRG 596
DTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRG
Sbjct: 706 DTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRG 765
Query: 597 FGRCLVYKNAKCTLKRYTNQTFDKVMGPVLDAATRKPIWRHEILDADGICSPGEKVENKQ 776
FGRCLVYKNAKCTLKRYTNQTFDKVMGP+LDAATRKPIWRHEILDADGICSPGEKVENKQ
Sbjct: 766 FGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQ 825
Query: 777 VLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLL 956
VLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLL
Sbjct: 826 VLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLL 885
Query: 957 RQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIE 1136
RQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIE
Sbjct: 886 RQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIE 945
Query: 1137 LLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFG 1316
LLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKD+VTSGITGEPLEAYIYFG
Sbjct: 946 LLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDFVTSGITGEPLEAYIYFG 1005
Query: 1317 PVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLL 1496
PVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLL
Sbjct: 1006 PVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLL 1065
Query: 1497 ERLMISSDAFEVDVCGQCGLLGYSGWCHYCKSSCHVSSL 1613
ERLMISSDAFEVDVCGQCGLLGYSGWCHYCKSSCHVSSL
Sbjct: 1066 ERLMISSDAFEVDVCGQCGLLGYSGWCHYCKSSCHVSSL 1104
>ref|XP_861044.1| PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
17 [Canis familiaris].
Length = 1099
Score = 416 bits (1070), Expect = e-116
Identities = 227/538 (42%), Positives = 332/538 (61%), Gaps = 23/538 (4%)
Frame = +3
Query: 63 EAARVPRPYIIVKKQKPAVTNKHMEELAQG-YRNF--EDFLHESLVEYLDVNEENDCNIA 233
+A R+ RP +IV+KQK + +H+++L + Y N+ +D + +VEY+D EE +A
Sbjct: 542 DAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLA 601
Query: 234 LYEHTINKDT-------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTI 392
+ + + TH EI P +LGVCA +IP+P HNQSPRNTYQ AMGKQAMG
Sbjct: 602 MTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVY 661
Query: 393 GYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVL 572
N R+DTL ++L YPQKP+V T+++E + F +LPAG N+ VA+ SY+GY+ ED++++
Sbjct: 662 ITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIM 721
Query: 573 NKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPVLDAATRKPI--WRHEI---LDAD 737
N++++DRGF R + Y++ K ++ + + FD+ V + TR+ RH I LD D
Sbjct: 722 NRSAVDRGFFRSVFYRSYK---EQESKKGFDQ--EEVFEKPTRETCQGMRHAIYDKLDDD 776
Query: 738 GICSPGEKVENKQVLVNKSMP-TVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMI 914
G+ +PG +V V++ K++ + LEG+N ++ +D + + +++VM+
Sbjct: 777 GLIAPGVRVSGDDVIIGKTVTLPENEDELEGTN--RRYTKRDCSTFLRTSETGIVDQVMV 834
Query: 915 SSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNP 1094
+ N E K+ +R R P+IGDKF+SRHGQKG CG+ QEDMPF GI PDII+NP
Sbjct: 835 TLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINP 894
Query: 1095 HGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGS-KVKDVCEDLVRHGYNYLGKDYVT 1271
H PSRMT+G LIE L GK G T F + V+ + L +GY+ G + +
Sbjct: 895 HAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLY 954
Query: 1272 SGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEM 1451
+G TG + + I+ GP YYQ+LKHMV DK+H+RARGP +L RQP EGRSRDGGLR GEM
Sbjct: 955 NGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEM 1014
Query: 1452 ERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSGW------CHYCKSSCHVS 1607
ERDC I +GA+ L ERL +SD ++V VC CG++ + C C++ +S
Sbjct: 1015 ERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQIS 1072
>ref|XP_861018.1| PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
16 [Canis familiaris].
Length = 1173
Score = 416 bits (1070), Expect = e-116
Identities = 227/538 (42%), Positives = 332/538 (61%), Gaps = 23/538 (4%)
Frame = +3
Query: 63 EAARVPRPYIIVKKQKPAVTNKHMEELAQG-YRNF--EDFLHESLVEYLDVNEENDCNIA 233
+A R+ RP +IV+KQK + +H+++L + Y N+ +D + +VEY+D EE +A
Sbjct: 616 DAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLA 675
Query: 234 LYEHTINKDT-------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTI 392
+ + + TH EI P +LGVCA +IP+P HNQSPRNTYQ AMGKQAMG
Sbjct: 676 MTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVY 735
Query: 393 GYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVL 572
N R+DTL ++L YPQKP+V T+++E + F +LPAG N+ VA+ SY+GY+ ED++++
Sbjct: 736 ITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIM 795
Query: 573 NKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPVLDAATRKPI--WRHEI---LDAD 737
N++++DRGF R + Y++ K ++ + + FD+ V + TR+ RH I LD D
Sbjct: 796 NRSAVDRGFFRSVFYRSYK---EQESKKGFDQ--EEVFEKPTRETCQGMRHAIYDKLDDD 850
Query: 738 GICSPGEKVENKQVLVNKSMP-TVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMI 914
G+ +PG +V V++ K++ + LEG+N ++ +D + + +++VM+
Sbjct: 851 GLIAPGVRVSGDDVIIGKTVTLPENEDELEGTN--RRYTKRDCSTFLRTSETGIVDQVMV 908
Query: 915 SSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNP 1094
+ N E K+ +R R P+IGDKF+SRHGQKG CG+ QEDMPF GI PDII+NP
Sbjct: 909 TLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINP 968
Query: 1095 HGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGS-KVKDVCEDLVRHGYNYLGKDYVT 1271
H PSRMT+G LIE L GK G T F + V+ + L +GY+ G + +
Sbjct: 969 HAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLY 1028
Query: 1272 SGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEM 1451
+G TG + + I+ GP YYQ+LKHMV DK+H+RARGP +L RQP EGRSRDGGLR GEM
Sbjct: 1029 NGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEM 1088
Query: 1452 ERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSGW------CHYCKSSCHVS 1607
ERDC I +GA+ L ERL +SD ++V VC CG++ + C C++ +S
Sbjct: 1089 ERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQIS 1146
>ref|XP_860963.1| PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
14 [Canis familiaris].
Length = 1175
Score = 416 bits (1070), Expect = e-116
Identities = 227/538 (42%), Positives = 332/538 (61%), Gaps = 23/538 (4%)
Frame = +3
Query: 63 EAARVPRPYIIVKKQKPAVTNKHMEELAQG-YRNF--EDFLHESLVEYLDVNEENDCNIA 233
+A R+ RP +IV+KQK + +H+++L + Y N+ +D + +VEY+D EE +A
Sbjct: 618 DAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLA 677
Query: 234 LYEHTINKDT-------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTI 392
+ + + TH EI P +LGVCA +IP+P HNQSPRNTYQ AMGKQAMG
Sbjct: 678 MTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVY 737
Query: 393 GYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVL 572
N R+DTL ++L YPQKP+V T+++E + F +LPAG N+ VA+ SY+GY+ ED++++
Sbjct: 738 ITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIM 797
Query: 573 NKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPVLDAATRKPI--WRHEI---LDAD 737
N++++DRGF R + Y++ K ++ + + FD+ V + TR+ RH I LD D
Sbjct: 798 NRSAVDRGFFRSVFYRSYK---EQESKKGFDQ--EEVFEKPTRETCQGMRHAIYDKLDDD 852
Query: 738 GICSPGEKVENKQVLVNKSMP-TVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMI 914
G+ +PG +V V++ K++ + LEG+N ++ +D + + +++VM+
Sbjct: 853 GLIAPGVRVSGDDVIIGKTVTLPENEDELEGTN--RRYTKRDCSTFLRTSETGIVDQVMV 910
Query: 915 SSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNP 1094
+ N E K+ +R R P+IGDKF+SRHGQKG CG+ QEDMPF GI PDII+NP
Sbjct: 911 TLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINP 970
Query: 1095 HGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGS-KVKDVCEDLVRHGYNYLGKDYVT 1271
H PSRMT+G LIE L GK G T F + V+ + L +GY+ G + +
Sbjct: 971 HAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLY 1030
Query: 1272 SGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEM 1451
+G TG + + I+ GP YYQ+LKHMV DK+H+RARGP +L RQP EGRSRDGGLR GEM
Sbjct: 1031 NGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEM 1090
Query: 1452 ERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSGW------CHYCKSSCHVS 1607
ERDC I +GA+ L ERL +SD ++V VC CG++ + C C++ +S
Sbjct: 1091 ERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQIS 1148
>ref|XP_860899.1| PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
12 [Canis familiaris].
Length = 1174
Score = 416 bits (1070), Expect = e-116
Identities = 227/538 (42%), Positives = 332/538 (61%), Gaps = 23/538 (4%)
Frame = +3
Query: 63 EAARVPRPYIIVKKQKPAVTNKHMEELAQG-YRNF--EDFLHESLVEYLDVNEENDCNIA 233
+A R+ RP +IV+KQK + +H+++L + Y N+ +D + +VEY+D EE +A
Sbjct: 617 DAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLA 676
Query: 234 LYEHTINKDT-------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTI 392
+ + + TH EI P +LGVCA +IP+P HNQSPRNTYQ AMGKQAMG
Sbjct: 677 MTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVY 736
Query: 393 GYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVL 572
N R+DTL ++L YPQKP+V T+++E + F +LPAG N+ VA+ SY+GY+ ED++++
Sbjct: 737 ITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIM 796
Query: 573 NKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPVLDAATRKPI--WRHEI---LDAD 737
N++++DRGF R + Y++ K ++ + + FD+ V + TR+ RH I LD D
Sbjct: 797 NRSAVDRGFFRSVFYRSYK---EQESKKGFDQ--EEVFEKPTRETCQGMRHAIYDKLDDD 851
Query: 738 GICSPGEKVENKQVLVNKSMP-TVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMI 914
G+ +PG +V V++ K++ + LEG+N ++ +D + + +++VM+
Sbjct: 852 GLIAPGVRVSGDDVIIGKTVTLPENEDELEGTN--RRYTKRDCSTFLRTSETGIVDQVMV 909
Query: 915 SSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNP 1094
+ N E K+ +R R P+IGDKF+SRHGQKG CG+ QEDMPF GI PDII+NP
Sbjct: 910 TLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINP 969
Query: 1095 HGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGS-KVKDVCEDLVRHGYNYLGKDYVT 1271
H PSRMT+G LIE L GK G T F + V+ + L +GY+ G + +
Sbjct: 970 HAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLY 1029
Query: 1272 SGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEM 1451
+G TG + + I+ GP YYQ+LKHMV DK+H+RARGP +L RQP EGRSRDGGLR GEM
Sbjct: 1030 NGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEM 1089
Query: 1452 ERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSGW------CHYCKSSCHVS 1607
ERDC I +GA+ L ERL +SD ++V VC CG++ + C C++ +S
Sbjct: 1090 ERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQIS 1147
>ref|XP_860838.1| PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
10 [Canis familiaris].
Length = 1166
Score = 416 bits (1070), Expect = e-116
Identities = 227/538 (42%), Positives = 332/538 (61%), Gaps = 23/538 (4%)
Frame = +3
Query: 63 EAARVPRPYIIVKKQKPAVTNKHMEELAQG-YRNF--EDFLHESLVEYLDVNEENDCNIA 233
+A R+ RP +IV+KQK + +H+++L + Y N+ +D + +VEY+D EE +A
Sbjct: 609 DAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLA 668
Query: 234 LYEHTINKDT-------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTI 392
+ + + TH EI P +LGVCA +IP+P HNQSPRNTYQ AMGKQAMG
Sbjct: 669 MTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVY 728
Query: 393 GYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVL 572
N R+DTL ++L YPQKP+V T+++E + F +LPAG N+ VA+ SY+GY+ ED++++
Sbjct: 729 ITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIM 788
Query: 573 NKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPVLDAATRKPI--WRHEI---LDAD 737
N++++DRGF R + Y++ K ++ + + FD+ V + TR+ RH I LD D
Sbjct: 789 NRSAVDRGFFRSVFYRSYK---EQESKKGFDQ--EEVFEKPTRETCQGMRHAIYDKLDDD 843
Query: 738 GICSPGEKVENKQVLVNKSMP-TVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMI 914
G+ +PG +V V++ K++ + LEG+N ++ +D + + +++VM+
Sbjct: 844 GLIAPGVRVSGDDVIIGKTVTLPENEDELEGTN--RRYTKRDCSTFLRTSETGIVDQVMV 901
Query: 915 SSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNP 1094
+ N E K+ +R R P+IGDKF+SRHGQKG CG+ QEDMPF GI PDII+NP
Sbjct: 902 TLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINP 961
Query: 1095 HGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGS-KVKDVCEDLVRHGYNYLGKDYVT 1271
H PSRMT+G LIE L GK G T F + V+ + L +GY+ G + +
Sbjct: 962 HAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLY 1021
Query: 1272 SGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEM 1451
+G TG + + I+ GP YYQ+LKHMV DK+H+RARGP +L RQP EGRSRDGGLR GEM
Sbjct: 1022 NGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEM 1081
Query: 1452 ERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSGW------CHYCKSSCHVS 1607
ERDC I +GA+ L ERL +SD ++V VC CG++ + C C++ +S
Sbjct: 1082 ERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQIS 1139
>ref|XP_860737.1| PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
7 [Canis familiaris].
Length = 1113
Score = 416 bits (1070), Expect = e-116
Identities = 227/538 (42%), Positives = 332/538 (61%), Gaps = 23/538 (4%)
Frame = +3
Query: 63 EAARVPRPYIIVKKQKPAVTNKHMEELAQG-YRNF--EDFLHESLVEYLDVNEENDCNIA 233
+A R+ RP +IV+KQK + +H+++L + Y N+ +D + +VEY+D EE +A
Sbjct: 556 DAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLA 615
Query: 234 LYEHTINKDT-------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTI 392
+ + + TH EI P +LGVCA +IP+P HNQSPRNTYQ AMGKQAMG
Sbjct: 616 MTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVY 675
Query: 393 GYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVL 572
N R+DTL ++L YPQKP+V T+++E + F +LPAG N+ VA+ SY+GY+ ED++++
Sbjct: 676 ITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIM 735
Query: 573 NKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPVLDAATRKPI--WRHEI---LDAD 737
N++++DRGF R + Y++ K ++ + + FD+ V + TR+ RH I LD D
Sbjct: 736 NRSAVDRGFFRSVFYRSYK---EQESKKGFDQ--EEVFEKPTRETCQGMRHAIYDKLDDD 790
Query: 738 GICSPGEKVENKQVLVNKSMP-TVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMI 914
G+ +PG +V V++ K++ + LEG+N ++ +D + + +++VM+
Sbjct: 791 GLIAPGVRVSGDDVIIGKTVTLPENEDELEGTN--RRYTKRDCSTFLRTSETGIVDQVMV 848
Query: 915 SSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNP 1094
+ N E K+ +R R P+IGDKF+SRHGQKG CG+ QEDMPF GI PDII+NP
Sbjct: 849 TLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINP 908
Query: 1095 HGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGS-KVKDVCEDLVRHGYNYLGKDYVT 1271
H PSRMT+G LIE L GK G T F + V+ + L +GY+ G + +
Sbjct: 909 HAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLY 968
Query: 1272 SGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEM 1451
+G TG + + I+ GP YYQ+LKHMV DK+H+RARGP +L RQP EGRSRDGGLR GEM
Sbjct: 969 NGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEM 1028
Query: 1452 ERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSGW------CHYCKSSCHVS 1607
ERDC I +GA+ L ERL +SD ++V VC CG++ + C C++ +S
Sbjct: 1029 ERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQIS 1086
>ref|XP_532382.2| PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
2 [Canis familiaris].
Length = 1174
Score = 416 bits (1070), Expect = e-116
Identities = 227/538 (42%), Positives = 332/538 (61%), Gaps = 23/538 (4%)
Frame = +3
Query: 63 EAARVPRPYIIVKKQKPAVTNKHMEELAQG-YRNF--EDFLHESLVEYLDVNEENDCNIA 233
+A R+ RP +IV+KQK + +H+++L + Y N+ +D + +VEY+D EE +A
Sbjct: 617 DAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLA 676
Query: 234 LYEHTINKDT-------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTI 392
+ + + TH EI P +LGVCA +IP+P HNQSPRNTYQ AMGKQAMG
Sbjct: 677 MTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVY 736
Query: 393 GYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVL 572
N R+DTL ++L YPQKP+V T+++E + F +LPAG N+ VA+ SY+GY+ ED++++
Sbjct: 737 ITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIM 796
Query: 573 NKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPVLDAATRKPI--WRHEI---LDAD 737
N++++DRGF R + Y++ K ++ + + FD+ V + TR+ RH I LD D
Sbjct: 797 NRSAVDRGFFRSVFYRSYK---EQESKKGFDQ--EEVFEKPTRETCQGMRHAIYDKLDDD 851
Query: 738 GICSPGEKVENKQVLVNKSMP-TVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMI 914
G+ +PG +V V++ K++ + LEG+N ++ +D + + +++VM+
Sbjct: 852 GLIAPGVRVSGDDVIIGKTVTLPENEDELEGTN--RRYTKRDCSTFLRTSETGIVDQVMV 909
Query: 915 SSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNP 1094
+ N E K+ +R R P+IGDKF+SRHGQKG CG+ QEDMPF GI PDII+NP
Sbjct: 910 TLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINP 969
Query: 1095 HGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGS-KVKDVCEDLVRHGYNYLGKDYVT 1271
H PSRMT+G LIE L GK G T F + V+ + L +GY+ G + +
Sbjct: 970 HAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLY 1029
Query: 1272 SGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEM 1451
+G TG + + I+ GP YYQ+LKHMV DK+H+RARGP +L RQP EGRSRDGGLR GEM
Sbjct: 1030 NGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEM 1089
Query: 1452 ERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSGW------CHYCKSSCHVS 1607
ERDC I +GA+ L ERL +SD ++V VC CG++ + C C++ +S
Sbjct: 1090 ERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQIS 1147
>ref|XP_860990.1| PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
15 [Canis familiaris].
Length = 1179
Score = 414 bits (1065), Expect = e-115
Identities = 228/544 (41%), Positives = 332/544 (61%), Gaps = 29/544 (5%)
Frame = +3
Query: 63 EAARVPRPYIIVKKQKPAVTNKHMEELAQG-YRNFEDFLHES--------LVEYLDVNEE 215
+A R+ RP +IV+KQK + +H+++L + Y N+ +F S +VEY+D EE
Sbjct: 616 DAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSEFFFFSWQDLVASGVVEYIDTLEE 675
Query: 216 NDCNIALYEHTINKDT-------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGK 374
+A+ + + TH EI P +LGVCA +IP+P HNQSPRNTYQ AMGK
Sbjct: 676 ETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGK 735
Query: 375 QAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDI 554
QAMG N R+DTL ++L YPQKP+V T+++E + F +LPAG N+ VA+ SY+GY+
Sbjct: 736 QAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQ 795
Query: 555 EDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPVLDAATRKPI--WRHEI- 725
ED++++N++++DRGF R + Y++ K ++ + + FD+ V + TR+ RH I
Sbjct: 796 EDSVIMNRSAVDRGFFRSVFYRSYK---EQESKKGFDQ--EEVFEKPTRETCQGMRHAIY 850
Query: 726 --LDADGICSPGEKVENKQVLVNKSMP-TVTQIPLEGSNVPQQPQYKDVPITYKGATDSY 896
LD DG+ +PG +V V++ K++ + LEG+N ++ +D + +
Sbjct: 851 DKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEGTN--RRYTKRDCSTFLRTSETGI 908
Query: 897 IEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICP 1076
+++VM++ N E K+ +R R P+IGDKF+SRHGQKG CG+ QEDMPF GI P
Sbjct: 909 VDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITP 968
Query: 1077 DIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGS-KVKDVCEDLVRHGYNYL 1253
DII+NPH PSRMT+G LIE L GK G T F + V+ + L +GY+
Sbjct: 969 DIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLR 1028
Query: 1254 GKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGG 1433
G + + +G TG + + I+ GP YYQ+LKHMV DK+H+RARGP +L RQP EGRSRDGG
Sbjct: 1029 GNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGG 1088
Query: 1434 LRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSGW------CHYCKSS 1595
LR GEMERDC I +GA+ L ERL +SD ++V VC CG++ + C C++
Sbjct: 1089 LRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNK 1148
Query: 1596 CHVS 1607
+S
Sbjct: 1149 TQIS 1152
>ref|XP_860930.1| PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa
polypeptide (RNA polymerase II subunit 2) (RPB2) isoform
13 [Canis familiaris].
Length = 1180
Score = 414 bits (1065), Expect = e-115
Identities = 228/544 (41%), Positives = 332/544 (61%), Gaps = 29/544 (5%)
Frame = +3
Query: 63 EAARVPRPYIIVKKQKPAVTNKHMEELAQG-YRNFEDFLHES--------LVEYLDVNEE 215
+A R+ RP +IV+KQK + +H+++L + Y N+ +F S +VEY+D EE
Sbjct: 617 DAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSEFFFFSWQDLVASGVVEYIDTLEE 676
Query: 216 NDCNIALYEHTINKDT-------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGK 374
+A+ + + TH EI P +LGVCA +IP+P HNQSPRNTYQ AMGK
Sbjct: 677 ETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGK 736
Query: 375 QAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDI 554
QAMG N R+DTL ++L YPQKP+V T+++E + F +LPAG N+ VA+ SY+GY+
Sbjct: 737 QAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQ 796
Query: 555 EDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPVLDAATRKPI--WRHEI- 725
ED++++N++++DRGF R + Y++ K ++ + + FD+ V + TR+ RH I
Sbjct: 797 EDSVIMNRSAVDRGFFRSVFYRSYK---EQESKKGFDQ--EEVFEKPTRETCQGMRHAIY 851
Query: 726 --LDADGICSPGEKVENKQVLVNKSMP-TVTQIPLEGSNVPQQPQYKDVPITYKGATDSY 896
LD DG+ +PG +V V++ K++ + LEG+N ++ +D + +
Sbjct: 852 DKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEGTN--RRYTKRDCSTFLRTSETGI 909
Query: 897 IEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICP 1076
+++VM++ N E K+ +R R P+IGDKF+SRHGQKG CG+ QEDMPF GI P
Sbjct: 910 VDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITP 969
Query: 1077 DIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGS-KVKDVCEDLVRHGYNYL 1253
DII+NPH PSRMT+G LIE L GK G T F + V+ + L +GY+
Sbjct: 970 DIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLR 1029
Query: 1254 GKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGG 1433
G + + +G TG + + I+ GP YYQ+LKHMV DK+H+RARGP +L RQP EGRSRDGG
Sbjct: 1030 GNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGG 1089
Query: 1434 LRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSGW------CHYCKSS 1595
LR GEMERDC I +GA+ L ERL +SD ++V VC CG++ + C C++
Sbjct: 1090 LRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNK 1149
Query: 1596 CHVS 1607
+S
Sbjct: 1150 TQIS 1153
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 69,372,685
Number of extensions: 1938149
Number of successful extensions: 5141
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 5094
Number of HSP's successfully gapped: 16
Length of query: 539
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 431
Effective length of database: 15,274,216
Effective search space: 6583187096
Effective search space used: 6583187096
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-014071
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014071
(1617 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001179718.1| DNA-directed RNA polymerase III subunit RPC2... 1054 0.0
Alignment gi|XP_002687706.1| PREDICTED: polymerase (RNA) III (DNA directe... 1054 0.0
Alignment gi|NP_001092552.1| DNA-directed RNA polymerase II subunit RPB2 ... 416 e-116
Alignment gi|NP_001093762.1| DNA-directed RNA polymerase I subunit RPA2 [... 315 1e-85
>ref|NP_001179718.1| DNA-directed RNA polymerase III subunit RPC2 [Bos taurus].
Length = 1133
Score = 1054 bits (2726), Expect = 0.0
Identities = 510/519 (98%), Positives = 515/519 (99%)
Frame = +3
Query: 57 AQEAARVPRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL 236
+ + R+ RPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL
Sbjct: 586 SSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL 645
Query: 237 YEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRI 416
YEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRI
Sbjct: 646 YEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRI 705
Query: 417 DTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRG 596
DTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRG
Sbjct: 706 DTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRG 765
Query: 597 FGRCLVYKNAKCTLKRYTNQTFDKVMGPVLDAATRKPIWRHEILDADGICSPGEKVENKQ 776
FGRCLVYKNAKCTLKRYTNQTFDKVMGP+LDAATRKPIWRHEILDADGICSPGEKVENKQ
Sbjct: 766 FGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQ 825
Query: 777 VLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLL 956
VLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLL
Sbjct: 826 VLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLL 885
Query: 957 RQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIE 1136
RQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIE
Sbjct: 886 RQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIE 945
Query: 1137 LLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFG 1316
LLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFG
Sbjct: 946 LLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFG 1005
Query: 1317 PVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLL 1496
PVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLL
Sbjct: 1006 PVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLL 1065
Query: 1497 ERLMISSDAFEVDVCGQCGLLGYSGWCHYCKSSCHVSSL 1613
ERLMISSDAFEVDVCGQCGLLGYSGWCH+CKSSCHVSSL
Sbjct: 1066 ERLMISSDAFEVDVCGQCGLLGYSGWCHFCKSSCHVSSL 1104
>ref|XP_002687706.1| PREDICTED: polymerase (RNA) III (DNA directed) polypeptide B [Bos
taurus].
Length = 1133
Score = 1054 bits (2726), Expect = 0.0
Identities = 510/519 (98%), Positives = 515/519 (99%)
Frame = +3
Query: 57 AQEAARVPRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL 236
+ + R+ RPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL
Sbjct: 586 SSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL 645
Query: 237 YEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRI 416
YEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRI
Sbjct: 646 YEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRI 705
Query: 417 DTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRG 596
DTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRG
Sbjct: 706 DTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRG 765
Query: 597 FGRCLVYKNAKCTLKRYTNQTFDKVMGPVLDAATRKPIWRHEILDADGICSPGEKVENKQ 776
FGRCLVYKNAKCTLKRYTNQTFDKVMGP+LDAATRKPIWRHEILDADGICSPGEKVENKQ
Sbjct: 766 FGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQ 825
Query: 777 VLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLL 956
VLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLL
Sbjct: 826 VLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLL 885
Query: 957 RQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIE 1136
RQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIE
Sbjct: 886 RQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIE 945
Query: 1137 LLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFG 1316
LLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFG
Sbjct: 946 LLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFG 1005
Query: 1317 PVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLL 1496
PVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLL
Sbjct: 1006 PVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLL 1065
Query: 1497 ERLMISSDAFEVDVCGQCGLLGYSGWCHYCKSSCHVSSL 1613
ERLMISSDAFEVDVCGQCGLLGYSGWCH+CKSSCHVSSL
Sbjct: 1066 ERLMISSDAFEVDVCGQCGLLGYSGWCHFCKSSCHVSSL 1104
>ref|NP_001092552.1| DNA-directed RNA polymerase II subunit RPB2 [Bos taurus].
Length = 1174
Score = 416 bits (1070), Expect = e-116
Identities = 227/538 (42%), Positives = 332/538 (61%), Gaps = 23/538 (4%)
Frame = +3
Query: 63 EAARVPRPYIIVKKQKPAVTNKHMEELAQG-YRNF--EDFLHESLVEYLDVNEENDCNIA 233
+A R+ RP +IV+KQK + +H+++L + Y N+ +D + +VEY+D EE +A
Sbjct: 617 DAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLA 676
Query: 234 LYEHTINKDT-------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTI 392
+ + + TH EI P +LGVCA +IP+P HNQSPRNTYQ AMGKQAMG
Sbjct: 677 MTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVY 736
Query: 393 GYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVL 572
N R+DTL ++L YPQKP+V T+++E + F +LPAG N+ VA+ SY+GY+ ED++++
Sbjct: 737 ITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIM 796
Query: 573 NKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPVLDAATRKPI--WRHEI---LDAD 737
N++++DRGF R + Y++ K ++ + + FD+ V + TR+ RH I LD D
Sbjct: 797 NRSAVDRGFFRSVFYRSYK---EQESKKGFDQ--EEVFEKPTRETCQGMRHAIYDKLDDD 851
Query: 738 GICSPGEKVENKQVLVNKSMP-TVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMI 914
G+ +PG +V V++ K++ + LEG+N ++ +D + + +++VM+
Sbjct: 852 GLIAPGVRVSGDDVIIGKTVTLPENEDELEGTN--RRYTKRDCSTFLRTSETGIVDQVMV 909
Query: 915 SSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNP 1094
+ N E K+ +R R P+IGDKF+SRHGQKG CG+ QEDMPF GI PDII+NP
Sbjct: 910 TLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINP 969
Query: 1095 HGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGS-KVKDVCEDLVRHGYNYLGKDYVT 1271
H PSRMT+G LIE L GK G T F + V+ + L +GY+ G + +
Sbjct: 970 HAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLY 1029
Query: 1272 SGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEM 1451
+G TG + + I+ GP YYQ+LKHMV DK+H+RARGP +L RQP EGRSRDGGLR GEM
Sbjct: 1030 NGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEM 1089
Query: 1452 ERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSGW------CHYCKSSCHVS 1607
ERDC I +GA+ L ERL +SD ++V VC CG++ + C C++ +S
Sbjct: 1090 ERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQIS 1147
>ref|NP_001093762.1| DNA-directed RNA polymerase I subunit RPA2 [Bos taurus].
Length = 1135
Score = 315 bits (806), Expect = 1e-85
Identities = 188/464 (40%), Positives = 255/464 (54%), Gaps = 8/464 (1%)
Frame = +3
Query: 192 EYLDVNEENDCNIALYEHTINKD-TTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAM 368
E + E+ N+A++E + TTH E+ P +LL V A IP+ HNQSPRN YQC M
Sbjct: 632 ELIGTMEQIFMNVAIFEDEVLAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQM 691
Query: 369 GKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGY 548
GKQ MG ++R D +Y L PQ P+V+ + + + P G NA VAV+SY+GY
Sbjct: 692 GKQTMGFPLLTFQDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGY 751
Query: 549 DIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPVLDAATRKPIWRHEIL 728
D+EDA+++NKAS +RGF VYK+ L Q D ++ V R + L
Sbjct: 752 DMEDAMIVNKASWERGFAHGSVYKSEFIDLSERIKQGDDSLVFGVKPGDPRVL----QKL 807
Query: 729 DADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKV 908
D DG+ G +++ P + + L + + YK + ++ +
Sbjct: 808 DNDGLPFIGAQLKYGD-------PYYSYLNLNTG--------EGFVMYYKSKENCIVDNI 852
Query: 909 MISSNAEDAFLIKML---LRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPD 1079
+ SN K + +R R P IGDKF+SRHGQKG+ + P EDMPF +SG+ PD
Sbjct: 853 KVCSNDTGTGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPD 912
Query: 1080 IIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAF----GGSKVKDVCEDLVRHGYN 1247
I+ NPHGFPSRMT+G LIE +AGK+ L G H T F S ++ E L GYN
Sbjct: 913 ILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYN 972
Query: 1248 YLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRD 1427
Y G + + SGI+G LEA I+ G VYYQ+L+HMV DK R G R +T QP GR+
Sbjct: 973 YYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQ 1032
Query: 1428 GGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLL 1559
GG+R GEMERD L+ +G S LL +RL SD VC +CG L
Sbjct: 1033 GGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSL 1076
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 66,751,730
Number of extensions: 1891564
Number of successful extensions: 5177
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5164
Number of HSP's successfully gapped: 5
Length of query: 539
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 432
Effective length of database: 14,140,958
Effective search space: 6108893856
Effective search space used: 6108893856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014071
(1617 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003355419.1| PREDICTED: DNA-directed RNA polymerase III s... 1057 0.0
Alignment gi|XP_003129085.2| PREDICTED: DNA-directed RNA polymerase II su... 416 e-116
Alignment gi|XP_003355418.1| PREDICTED: DNA-directed RNA polymerase III s... 370 e-103
Alignment gi|XP_003124849.2| PREDICTED: DNA-directed RNA polymerase I sub... 317 9e-87
>ref|XP_003355419.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Sus
scrofa].
Length = 1075
Score = 1057 bits (2733), Expect = 0.0
Identities = 512/519 (98%), Positives = 515/519 (99%)
Frame = +3
Query: 57 AQEAARVPRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL 236
+ + R+ RPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL
Sbjct: 528 SSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL 587
Query: 237 YEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRI 416
YEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRI
Sbjct: 588 YEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRI 647
Query: 417 DTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRG 596
DTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRG
Sbjct: 648 DTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRG 707
Query: 597 FGRCLVYKNAKCTLKRYTNQTFDKVMGPVLDAATRKPIWRHEILDADGICSPGEKVENKQ 776
FGRCLVYKNAKCTLKRYTNQTFDKVMGPVLDAATRKPIWRHEILDADGICSPGEKVENKQ
Sbjct: 708 FGRCLVYKNAKCTLKRYTNQTFDKVMGPVLDAATRKPIWRHEILDADGICSPGEKVENKQ 767
Query: 777 VLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLL 956
VLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLL
Sbjct: 768 VLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLL 827
Query: 957 RQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIE 1136
RQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIE
Sbjct: 828 RQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIE 887
Query: 1137 LLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFG 1316
LLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFG
Sbjct: 888 LLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFG 947
Query: 1317 PVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLL 1496
PVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLL
Sbjct: 948 PVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLL 1007
Query: 1497 ERLMISSDAFEVDVCGQCGLLGYSGWCHYCKSSCHVSSL 1613
ERLMISSDAFEVDVCGQCGLLGYSGWCHYCKSSCHVSSL
Sbjct: 1008 ERLMISSDAFEVDVCGQCGLLGYSGWCHYCKSSCHVSSL 1046
>ref|XP_003129085.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Sus scrofa].
Length = 1167
Score = 416 bits (1070), Expect = e-116
Identities = 227/538 (42%), Positives = 332/538 (61%), Gaps = 23/538 (4%)
Frame = +3
Query: 63 EAARVPRPYIIVKKQKPAVTNKHMEELAQG-YRNF--EDFLHESLVEYLDVNEENDCNIA 233
+A R+ RP +IV+KQK + +H+++L + Y N+ +D + +VEY+D EE +A
Sbjct: 610 DAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLA 669
Query: 234 LYEHTINKDT-------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTI 392
+ + + TH EI P +LGVCA +IP+P HNQSPRNTYQ AMGKQAMG
Sbjct: 670 MTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVY 729
Query: 393 GYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVL 572
N R+DTL ++L YPQKP+V T+++E + F +LPAG N+ VA+ SY+GY+ ED++++
Sbjct: 730 ITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIM 789
Query: 573 NKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPVLDAATRKPI--WRHEI---LDAD 737
N++++DRGF R + Y++ K ++ + + FD+ V + TR+ RH I LD D
Sbjct: 790 NRSAVDRGFFRSVFYRSYK---EQESKKGFDQ--EEVFEKPTRETCQGMRHAIYDKLDDD 844
Query: 738 GICSPGEKVENKQVLVNKSMP-TVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMI 914
G+ +PG +V V++ K++ + LEG+N ++ +D + + +++VM+
Sbjct: 845 GLIAPGVRVSGDDVIIGKTVTLPENEDELEGTN--RRYTKRDCSTFLRTSETGIVDQVMV 902
Query: 915 SSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNP 1094
+ N E K+ +R R P+IGDKF+SRHGQKG CG+ QEDMPF GI PDII+NP
Sbjct: 903 TLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINP 962
Query: 1095 HGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGS-KVKDVCEDLVRHGYNYLGKDYVT 1271
H PSRMT+G LIE L GK G T F + V+ + L +GY+ G + +
Sbjct: 963 HAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLY 1022
Query: 1272 SGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEM 1451
+G TG + + I+ GP YYQ+LKHMV DK+H+RARGP +L RQP EGRSRDGGLR GEM
Sbjct: 1023 NGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEM 1082
Query: 1452 ERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSGW------CHYCKSSCHVS 1607
ERDC I +GA+ L ERL +SD ++V VC CG++ + C C++ +S
Sbjct: 1083 ERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQIS 1140
>ref|XP_003355418.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Sus
scrofa].
Length = 205
Score = 370 bits (951), Expect = e-103
Identities = 176/176 (100%), Positives = 176/176 (100%)
Frame = +3
Query: 1086 MNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDY 1265
MNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDY
Sbjct: 1 MNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDY 60
Query: 1266 VTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLG 1445
VTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLG
Sbjct: 61 VTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLG 120
Query: 1446 EMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSGWCHYCKSSCHVSSL 1613
EMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSGWCHYCKSSCHVSSL
Sbjct: 121 EMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSGWCHYCKSSCHVSSL 176
>ref|XP_003124849.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1 [Sus
scrofa].
Length = 1094
Score = 317 bits (813), Expect = 9e-87
Identities = 188/464 (40%), Positives = 255/464 (54%), Gaps = 8/464 (1%)
Frame = +3
Query: 192 EYLDVNEENDCNIALYEHTINKD-TTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAM 368
E + E+ N+A++E + TTH E+ P +LL V A IP+ HNQSPRN YQC M
Sbjct: 591 ELIGTMEQIFMNVAIFEDEVLAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQM 650
Query: 369 GKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGY 548
GKQ MG ++R D +Y L PQ P+V+ + + + P G NA VAV+SY+GY
Sbjct: 651 GKQTMGFPLLTFKDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGY 710
Query: 549 DIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPVLDAATRKPIWRHEIL 728
D+EDA++LNKAS +RGF VYK+ L Q D ++ V R + L
Sbjct: 711 DMEDAMILNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVRPGDPRVA----QKL 766
Query: 729 DADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKV 908
D DG+ G +++ P + + L + + YK + ++ +
Sbjct: 767 DDDGLPFVGAQLQYGD-------PYYSYLNLNTG--------ESFVVYYKSKENCIVDNI 811
Query: 909 MISSNAEDAFLIK---MLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPD 1079
+ N + K + +R R P IGDKF+SRHGQKG+ + P EDMPF +SG+ PD
Sbjct: 812 KVCGNDTGSGRFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPD 871
Query: 1080 IIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAF----GGSKVKDVCEDLVRHGYN 1247
I+ NPHGFPSRMT+G LIE +AGK+ L G H T F S ++ E L GYN
Sbjct: 872 ILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYN 931
Query: 1248 YLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRD 1427
Y G + + SGI+G LEA I+ G VYYQ+L+HMV DK R G R +T QP GR+
Sbjct: 932 YYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQ 991
Query: 1428 GGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLL 1559
GG+R GEMERD L+ +G S LL +RL SD VC +CG L
Sbjct: 992 GGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSL 1035
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 42,901,704
Number of extensions: 1206792
Number of successful extensions: 3184
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3176
Number of HSP's successfully gapped: 4
Length of query: 539
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 435
Effective length of database: 8,754,644
Effective search space: 3808270140
Effective search space used: 3808270140
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014071
(1617 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_081699.1| DNA-directed RNA polymerase III subunit RPC2 [M... 1055 0.0
Alignment gi|NP_722493.2| DNA-directed RNA polymerase II subunit RPB2 [Mu... 415 e-116
Alignment gi|NP_033112.2| DNA-directed RNA polymerase I subunit RPA2 [Mus... 318 1e-86
>ref|NP_081699.1| DNA-directed RNA polymerase III subunit RPC2 [Mus musculus].
Length = 1133
Score = 1055 bits (2727), Expect = 0.0
Identities = 510/519 (98%), Positives = 515/519 (99%)
Frame = +3
Query: 57 AQEAARVPRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL 236
+ + R+ RPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL
Sbjct: 586 SSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL 645
Query: 237 YEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRI 416
YEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRI
Sbjct: 646 YEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRI 705
Query: 417 DTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRG 596
DTLMYLLAYPQKPMVKTKTIELI+FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRG
Sbjct: 706 DTLMYLLAYPQKPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRG 765
Query: 597 FGRCLVYKNAKCTLKRYTNQTFDKVMGPVLDAATRKPIWRHEILDADGICSPGEKVENKQ 776
FGRCLVYKNAKCTLKRYTNQTFDKVMGP+LDAATRKPIWRHEILDADGICSPGEKVENKQ
Sbjct: 766 FGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQ 825
Query: 777 VLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLL 956
VLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLL
Sbjct: 826 VLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLL 885
Query: 957 RQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIE 1136
RQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIE
Sbjct: 886 RQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIE 945
Query: 1137 LLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFG 1316
LLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFG
Sbjct: 946 LLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFG 1005
Query: 1317 PVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLL 1496
PVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLL
Sbjct: 1006 PVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLL 1065
Query: 1497 ERLMISSDAFEVDVCGQCGLLGYSGWCHYCKSSCHVSSL 1613
ERLMISSDAFEVDVCGQCGLLGYSGWCHYCKSSCHVSSL
Sbjct: 1066 ERLMISSDAFEVDVCGQCGLLGYSGWCHYCKSSCHVSSL 1104
>ref|NP_722493.2| DNA-directed RNA polymerase II subunit RPB2 [Mus musculus].
Length = 1174
Score = 415 bits (1066), Expect = e-116
Identities = 225/537 (41%), Positives = 331/537 (61%), Gaps = 22/537 (4%)
Frame = +3
Query: 63 EAARVPRPYIIVKKQKPAVTNKHMEELAQG-YRNF--EDFLHESLVEYLDVNEENDCNIA 233
+A R+ RP +IV+KQK + +H+++L + Y N+ +D + +VEY+D EE +A
Sbjct: 617 DAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLA 676
Query: 234 LYEHTINKDT-------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTI 392
+ + + TH EI P +LGVCA +IP+P HNQSPRNTYQ AMGKQAMG
Sbjct: 677 MTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVY 736
Query: 393 GYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVL 572
N R+DTL ++L YPQKP+V T+++E + F +LPAG N+ VA+ SY+GY+ ED++++
Sbjct: 737 ITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIM 796
Query: 573 NKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPVLDAATRKPI--WRHEI---LDAD 737
N++++DRGF R + Y++ K ++ + + FD+ V + TR+ RH I LD D
Sbjct: 797 NRSAVDRGFFRSVFYRSYK---EQESKKGFDQ--EEVFEKPTRETCQGMRHAIYEKLDDD 851
Query: 738 GICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMIS 917
G+ +PG +V V++ K++ T+ + E + ++ +D + + +++VM++
Sbjct: 852 GLIAPGVRVSGDDVIIGKTV-TLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVT 910
Query: 918 SNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPH 1097
N E K+ +R R P+IGDKF+SRHGQKG CG+ QEDMPF GI PDII+NPH
Sbjct: 911 LNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPH 970
Query: 1098 GFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGS-KVKDVCEDLVRHGYNYLGKDYVTS 1274
PSRMT+G LIE L GK G T F + V+ + L +GY+ G + + +
Sbjct: 971 AIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYN 1030
Query: 1275 GITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEME 1454
G TG + + I+ GP YYQ+LKHMV DK+H+RARGP +L RQP EGRSRDGGLR GEME
Sbjct: 1031 GFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEME 1090
Query: 1455 RDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSGW------CHYCKSSCHVS 1607
RDC I +GA+ L ERL +SD ++V VC CG++ + C C++ +S
Sbjct: 1091 RDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQIS 1147
>ref|NP_033112.2| DNA-directed RNA polymerase I subunit RPA2 [Mus musculus].
Length = 1135
Score = 318 bits (814), Expect = 1e-86
Identities = 188/464 (40%), Positives = 256/464 (55%), Gaps = 8/464 (1%)
Frame = +3
Query: 192 EYLDVNEENDCNIALYEHTI-NKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAM 368
E + E+ N+A++E + +TH E+ P +LL V A IP+ HNQSPRN YQC M
Sbjct: 632 ELIGTMEQLFMNVAIFEDEVFGGISTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQM 691
Query: 369 GKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGY 548
GKQ MG +NR D +Y L PQ P+V+ + + + P G NA VAV+SY+GY
Sbjct: 692 GKQTMGFPLLTYQNRSDNKLYRLQTPQSPLVRPCMYDFYDMDNYPIGTNAIVAVISYTGY 751
Query: 549 DIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPVLDAATRKPIWRHEIL 728
D+EDA+++NKAS +RGF VYK+ L Q D ++ V R + L
Sbjct: 752 DMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKFKQGEDNLVFGVKPGDPRV----MQKL 807
Query: 729 DADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKV 908
D DG+ G K+E P + + L + + YK + ++ +
Sbjct: 808 DDDGLPFIGAKLEYGD-------PYYSYLNLNTG--------EGFVVYYKSKENCVVDNI 852
Query: 909 MISSNAEDAFLIKML---LRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPD 1079
+ SN + K + +R R P IGDKF+SRHGQKG+ + P EDMPF +SG+ PD
Sbjct: 853 KVCSNDMGSGKFKCICITVRIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPD 912
Query: 1080 IIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAF----GGSKVKDVCEDLVRHGYN 1247
I+ NPHGFPSRMT+G LIE +AGK+ L G H T F S ++ E L GYN
Sbjct: 913 ILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYN 972
Query: 1248 YLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRD 1427
+ G + + SGI+G LEA I+ G VYYQ+L+HMV DK R G R +T QP GR+
Sbjct: 973 FYGTERLYSGISGMELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPLGGRNVQ 1032
Query: 1428 GGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLL 1559
GG+R GEMERD L+ +G S LL +RL SD +C +CG L
Sbjct: 1033 GGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHMCVECGSL 1076
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 58,510,961
Number of extensions: 1650074
Number of successful extensions: 4614
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4601
Number of HSP's successfully gapped: 3
Length of query: 539
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 433
Effective length of database: 12,433,743
Effective search space: 5383810719
Effective search space used: 5383810719
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014071
(1617 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060552.4| DNA-directed RNA polymerase III subunit RPC2 is... 1056 0.0
Alignment gi|NP_001154180.1| DNA-directed RNA polymerase III subunit RPC2... 1056 0.0
Alignment gi|NP_000929.1| DNA-directed RNA polymerase II subunit RPB2 [Ho... 415 e-116
Alignment gi|NP_001131076.1| DNA-directed RNA polymerase I subunit RPA2 i... 315 1e-85
Alignment gi|NP_061887.2| DNA-directed RNA polymerase I subunit RPA2 isof... 315 1e-85
>ref|NP_060552.4| DNA-directed RNA polymerase III subunit RPC2 isoform 1 [Homo
sapiens].
Length = 1133
Score = 1056 bits (2730), Expect = 0.0
Identities = 511/519 (98%), Positives = 515/519 (99%)
Frame = +3
Query: 57 AQEAARVPRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL 236
+ + R+ RPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL
Sbjct: 586 SSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL 645
Query: 237 YEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRI 416
YEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRI
Sbjct: 646 YEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRI 705
Query: 417 DTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRG 596
DTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRG
Sbjct: 706 DTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRG 765
Query: 597 FGRCLVYKNAKCTLKRYTNQTFDKVMGPVLDAATRKPIWRHEILDADGICSPGEKVENKQ 776
FGRCLVYKNAKCTLKRYTNQTFDKVMGP+LDAATRKPIWRHEILDADGICSPGEKVENKQ
Sbjct: 766 FGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQ 825
Query: 777 VLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLL 956
VLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLL
Sbjct: 826 VLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLL 885
Query: 957 RQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIE 1136
RQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIE
Sbjct: 886 RQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIE 945
Query: 1137 LLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFG 1316
LLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFG
Sbjct: 946 LLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFG 1005
Query: 1317 PVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLL 1496
PVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLL
Sbjct: 1006 PVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLL 1065
Query: 1497 ERLMISSDAFEVDVCGQCGLLGYSGWCHYCKSSCHVSSL 1613
ERLMISSDAFEVDVCGQCGLLGYSGWCHYCKSSCHVSSL
Sbjct: 1066 ERLMISSDAFEVDVCGQCGLLGYSGWCHYCKSSCHVSSL 1104
>ref|NP_001154180.1| DNA-directed RNA polymerase III subunit RPC2 isoform 2 [Homo
sapiens].
Length = 1075
Score = 1056 bits (2730), Expect = 0.0
Identities = 511/519 (98%), Positives = 515/519 (99%)
Frame = +3
Query: 57 AQEAARVPRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL 236
+ + R+ RPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL
Sbjct: 528 SSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL 587
Query: 237 YEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRI 416
YEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRI
Sbjct: 588 YEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRI 647
Query: 417 DTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRG 596
DTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRG
Sbjct: 648 DTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRG 707
Query: 597 FGRCLVYKNAKCTLKRYTNQTFDKVMGPVLDAATRKPIWRHEILDADGICSPGEKVENKQ 776
FGRCLVYKNAKCTLKRYTNQTFDKVMGP+LDAATRKPIWRHEILDADGICSPGEKVENKQ
Sbjct: 708 FGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQ 767
Query: 777 VLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLL 956
VLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLL
Sbjct: 768 VLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLL 827
Query: 957 RQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIE 1136
RQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIE
Sbjct: 828 RQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIE 887
Query: 1137 LLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFG 1316
LLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFG
Sbjct: 888 LLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFG 947
Query: 1317 PVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLL 1496
PVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLL
Sbjct: 948 PVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLL 1007
Query: 1497 ERLMISSDAFEVDVCGQCGLLGYSGWCHYCKSSCHVSSL 1613
ERLMISSDAFEVDVCGQCGLLGYSGWCHYCKSSCHVSSL
Sbjct: 1008 ERLMISSDAFEVDVCGQCGLLGYSGWCHYCKSSCHVSSL 1046
>ref|NP_000929.1| DNA-directed RNA polymerase II subunit RPB2 [Homo sapiens].
Length = 1174
Score = 415 bits (1066), Expect = e-116
Identities = 225/537 (41%), Positives = 331/537 (61%), Gaps = 22/537 (4%)
Frame = +3
Query: 63 EAARVPRPYIIVKKQKPAVTNKHMEELAQG-YRNF--EDFLHESLVEYLDVNEENDCNIA 233
+A R+ RP +IV+KQK + +H+++L + Y N+ +D + +VEY+D EE +A
Sbjct: 617 DAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLA 676
Query: 234 LYEHTINKDT-------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTI 392
+ + + TH EI P +LGVCA +IP+P HNQSPRNTYQ AMGKQAMG
Sbjct: 677 MTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVY 736
Query: 393 GYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVL 572
N R+DTL ++L YPQKP+V T+++E + F +LPAG N+ VA+ SY+GY+ ED++++
Sbjct: 737 ITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIM 796
Query: 573 NKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPVLDAATRKPI--WRHEI---LDAD 737
N++++DRGF R + Y++ K ++ + + FD+ V + TR+ RH I LD D
Sbjct: 797 NRSAVDRGFFRSVFYRSYK---EQESKKGFDQ--EEVFEKPTRETCQGMRHAIYDKLDDD 851
Query: 738 GICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMIS 917
G+ +PG +V V++ K++ T+ + E + ++ +D + + +++VM++
Sbjct: 852 GLIAPGVRVSGDDVIIGKTV-TLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVT 910
Query: 918 SNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPH 1097
N E K+ +R R P+IGDKF+SRHGQKG CG+ QEDMPF GI PDII+NPH
Sbjct: 911 LNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPH 970
Query: 1098 GFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGS-KVKDVCEDLVRHGYNYLGKDYVTS 1274
PSRMT+G LIE L GK G T F + V+ + L +GY+ G + + +
Sbjct: 971 AIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYN 1030
Query: 1275 GITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEME 1454
G TG + + I+ GP YYQ+LKHMV DK+H+RARGP +L RQP EGRSRDGGLR GEME
Sbjct: 1031 GFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEME 1090
Query: 1455 RDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSGW------CHYCKSSCHVS 1607
RDC I +GA+ L ERL +SD ++V VC CG++ + C C++ +S
Sbjct: 1091 RDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQIS 1147
>ref|NP_001131076.1| DNA-directed RNA polymerase I subunit RPA2 isoform 2 [Homo sapiens].
Length = 1079
Score = 315 bits (806), Expect = 1e-85
Identities = 186/464 (40%), Positives = 255/464 (54%), Gaps = 8/464 (1%)
Frame = +3
Query: 192 EYLDVNEENDCNIALYEHTINKD-TTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAM 368
E + E+ N+A++E + TTH E+ P +LL V A IP+ HNQSPRN YQC M
Sbjct: 576 ELIGTMEQIFMNVAIFEDEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQM 635
Query: 369 GKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGY 548
GKQ MG ++R D +Y L PQ P+V+ + + + P G NA VAV+SY+GY
Sbjct: 636 GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGY 695
Query: 549 DIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPVLDAATRKPIWRHEIL 728
D+EDA+++NKAS +RGF VYK+ L Q ++ + R + L
Sbjct: 696 DMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRV----LQKL 751
Query: 729 DADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKV 908
D DG+ G K++ P + + L + + YK + ++ +
Sbjct: 752 DDDGLPFIGAKLQYGD-------PYYSYLNLNTG--------ESFVMYYKSKENCVVDNI 796
Query: 909 MISSNAEDAFLIK---MLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPD 1079
+ SN + K + +R R P IGDKF+SRHGQKG+ + P EDMPF +SG+ PD
Sbjct: 797 KVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPD 856
Query: 1080 IIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAF----GGSKVKDVCEDLVRHGYN 1247
I+ NPHGFPSRMT+G LIE +AGK+ L G H T F S ++ E L GYN
Sbjct: 857 ILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYN 916
Query: 1248 YLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRD 1427
+ G + + SGI+G LEA I+ G VYYQ+L+HMV DK R G R +T QP GR+
Sbjct: 917 FYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQ 976
Query: 1428 GGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLL 1559
GG+R GEMERD L+ +G S LL +RL SD VC +CG L
Sbjct: 977 GGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSL 1020
>ref|NP_061887.2| DNA-directed RNA polymerase I subunit RPA2 isoform 1 [Homo sapiens].
Length = 1135
Score = 315 bits (806), Expect = 1e-85
Identities = 186/464 (40%), Positives = 255/464 (54%), Gaps = 8/464 (1%)
Frame = +3
Query: 192 EYLDVNEENDCNIALYEHTINKD-TTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAM 368
E + E+ N+A++E + TTH E+ P +LL V A IP+ HNQSPRN YQC M
Sbjct: 632 ELIGTMEQIFMNVAIFEDEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQM 691
Query: 369 GKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGY 548
GKQ MG ++R D +Y L PQ P+V+ + + + P G NA VAV+SY+GY
Sbjct: 692 GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGY 751
Query: 549 DIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPVLDAATRKPIWRHEIL 728
D+EDA+++NKAS +RGF VYK+ L Q ++ + R + L
Sbjct: 752 DMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRV----LQKL 807
Query: 729 DADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKV 908
D DG+ G K++ P + + L + + YK + ++ +
Sbjct: 808 DDDGLPFIGAKLQYGD-------PYYSYLNLNTG--------ESFVMYYKSKENCVVDNI 852
Query: 909 MISSNAEDAFLIK---MLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPD 1079
+ SN + K + +R R P IGDKF+SRHGQKG+ + P EDMPF +SG+ PD
Sbjct: 853 KVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPD 912
Query: 1080 IIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAF----GGSKVKDVCEDLVRHGYN 1247
I+ NPHGFPSRMT+G LIE +AGK+ L G H T F S ++ E L GYN
Sbjct: 913 ILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYN 972
Query: 1248 YLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRD 1427
+ G + + SGI+G LEA I+ G VYYQ+L+HMV DK R G R +T QP GR+
Sbjct: 973 FYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQ 1032
Query: 1428 GGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLL 1559
GG+R GEMERD L+ +G S LL +RL SD VC +CG L
Sbjct: 1033 GGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSL 1076
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 68,454,214
Number of extensions: 1934923
Number of successful extensions: 5187
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5178
Number of HSP's successfully gapped: 5
Length of query: 539
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 432
Effective length of database: 14,770,016
Effective search space: 6380646912
Effective search space used: 6380646912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014071
(1617 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 420 e-114
>Sscrofa_Chr05
|| Length = 111506441
Score = 420 bits (212), Expect = e-114
Identities = 212/212 (100%)
Strand = Plus / Minus
Query: 384 ggtaccattggatacaaccagcggaacagaattgatactctcatgtatctcctcgcatat 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13731206 ggtaccattggatacaaccagcggaacagaattgatactctcatgtatctcctcgcatat 13731147
Query: 444 ccacaaaaacccatggttaaaacaaagaccattgaactgatagaatttgagaaactgcca 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13731146 ccacaaaaacccatggttaaaacaaagaccattgaactgatagaatttgagaaactgcca 13731087
Query: 504 gctgggcagaatgcgacagttgctgtgatgagttacagtggctatgatattgaagatgct 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13731086 gctgggcagaatgcgacagttgctgtgatgagttacagtggctatgatattgaagatgct 13731027
Query: 564 cttgttttaaacaaggcttccttggacagagg 595
||||||||||||||||||||||||||||||||
Sbjct: 13731026 cttgttttaaacaaggcttccttggacagagg 13730995
Score = 420 bits (212), Expect = e-114
Identities = 212/212 (100%)
Strand = Plus / Plus
Query: 384 ggtaccattggatacaaccagcggaacagaattgatactctcatgtatctcctcgcatat 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13821134 ggtaccattggatacaaccagcggaacagaattgatactctcatgtatctcctcgcatat 13821193
Query: 444 ccacaaaaacccatggttaaaacaaagaccattgaactgatagaatttgagaaactgcca 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13821194 ccacaaaaacccatggttaaaacaaagaccattgaactgatagaatttgagaaactgcca 13821253
Query: 504 gctgggcagaatgcgacagttgctgtgatgagttacagtggctatgatattgaagatgct 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13821254 gctgggcagaatgcgacagttgctgtgatgagttacagtggctatgatattgaagatgct 13821313
Query: 564 cttgttttaaacaaggcttccttggacagagg 595
||||||||||||||||||||||||||||||||
Sbjct: 13821314 cttgttttaaacaaggcttccttggacagagg 13821345
Score = 420 bits (212), Expect = e-114
Identities = 212/212 (100%)
Strand = Plus / Minus
Query: 384 ggtaccattggatacaaccagcggaacagaattgatactctcatgtatctcctcgcatat 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13952343 ggtaccattggatacaaccagcggaacagaattgatactctcatgtatctcctcgcatat 13952284
Query: 444 ccacaaaaacccatggttaaaacaaagaccattgaactgatagaatttgagaaactgcca 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13952283 ccacaaaaacccatggttaaaacaaagaccattgaactgatagaatttgagaaactgcca 13952224
Query: 504 gctgggcagaatgcgacagttgctgtgatgagttacagtggctatgatattgaagatgct 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13952223 gctgggcagaatgcgacagttgctgtgatgagttacagtggctatgatattgaagatgct 13952164
Query: 564 cttgttttaaacaaggcttccttggacagagg 595
||||||||||||||||||||||||||||||||
Sbjct: 13952163 cttgttttaaacaaggcttccttggacagagg 13952132
Score = 337 bits (170), Expect = 1e-89
Identities = 176/178 (98%)
Strand = Plus / Minus
Query: 1398 aggcagcccactgaaggccgatctcgagacggtggtttgcgtcttggagaaatggaacgt 1457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13694256 aggcagcccactgaaggccgatctcgagacggtggtttgcgtcttggagaaatggaacgt 13694197
Query: 1458 gactgtttaattggctatggagccagtatgcttttactggagagactaatgatttcaagc 1517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13694196 gactgtttaattggctatggagccagtatgcttttactggagagactaatgatttcaagc 13694137
Query: 1518 gatgcctttgaggttgatgtctgcgggcaatgcgggcttctgggatactcgggctggt 1575
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 13694136 gatgcctttgaggttgatgtctgcgggcagtgcgggcttctgggatactccggctggt 13694079
Score = 337 bits (170), Expect = 1e-89
Identities = 176/178 (98%)
Strand = Plus / Minus
Query: 1398 aggcagcccactgaaggccgatctcgagacggtggtttgcgtcttggagaaatggaacgt 1457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13915553 aggcagcccactgaaggccgatctcgagacggtggtttgcgtcttggagaaatggaacgt 13915494
Query: 1458 gactgtttaattggctatggagccagtatgcttttactggagagactaatgatttcaagc 1517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13915493 gactgtttaattggctatggagccagtatgcttttactggagagactaatgatttcaagc 13915434
Query: 1518 gatgcctttgaggttgatgtctgcgggcaatgcgggcttctgggatactcgggctggt 1575
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 13915433 gatgcctttgaggttgatgtctgcgggcagtgcgggcttctgggatactccggctggt 13915376
Score = 333 bits (168), Expect = 2e-88
Identities = 168/168 (100%)
Strand = Plus / Minus
Query: 1118 ggtgggaaagttaattgaactgctggcaggcaaggccggcgtgttggacggccgattcca 1177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13704290 ggtgggaaagttaattgaactgctggcaggcaaggccggcgtgttggacggccgattcca 13704231
Query: 1178 ctacggcactgcctttgggggcagcaaagtgaaggacgtgtgtgaagacctcgttcgcca 1237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13704230 ctacggcactgcctttgggggcagcaaagtgaaggacgtgtgtgaagacctcgttcgcca 13704171
Query: 1238 cggatacaactacttggggaaagactacgttacatctggcatcacagg 1285
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13704170 cggatacaactacttggggaaagactacgttacatctggcatcacagg 13704123
Score = 333 bits (168), Expect = 2e-88
Identities = 168/168 (100%)
Strand = Plus / Plus
Query: 1118 ggtgggaaagttaattgaactgctggcaggcaaggccggcgtgttggacggccgattcca 1177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13809879 ggtgggaaagttaattgaactgctggcaggcaaggccggcgtgttggacggccgattcca 13809938
Query: 1178 ctacggcactgcctttgggggcagcaaagtgaaggacgtgtgtgaagacctcgttcgcca 1237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13809939 ctacggcactgcctttgggggcagcaaagtgaaggacgtgtgtgaagacctcgttcgcca 13809998
Query: 1238 cggatacaactacttggggaaagactacgttacatctggcatcacagg 1285
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13809999 cggatacaactacttggggaaagactacgttacatctggcatcacagg 13810046
Score = 333 bits (168), Expect = 2e-88
Identities = 168/168 (100%)
Strand = Plus / Minus
Query: 1118 ggtgggaaagttaattgaactgctggcaggcaaggccggcgtgttggacggccgattcca 1177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13925419 ggtgggaaagttaattgaactgctggcaggcaaggccggcgtgttggacggccgattcca 13925360
Query: 1178 ctacggcactgcctttgggggcagcaaagtgaaggacgtgtgtgaagacctcgttcgcca 1237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13925359 ctacggcactgcctttgggggcagcaaagtgaaggacgtgtgtgaagacctcgttcgcca 13925300
Query: 1238 cggatacaactacttggggaaagactacgttacatctggcatcacagg 1285
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13925299 cggatacaactacttggggaaagactacgttacatctggcatcacagg 13925252
Score = 323 bits (163), Expect = 2e-85
Identities = 163/163 (100%)
Strand = Plus / Minus
Query: 593 aggctttgggcgttgccttgtatataaaaatgctaaatgtacattgaagcgatataccaa 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13728700 aggctttgggcgttgccttgtatataaaaatgctaaatgtacattgaagcgatataccaa 13728641
Query: 653 tcagacttttgataaagtgatggggccagtgttggatgctgctacaagaaaacccatctg 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13728640 tcagacttttgataaagtgatggggccagtgttggatgctgctacaagaaaacccatctg 13728581
Query: 713 gcgacatgaaattttagatgcagatggtatttgttctccaggt 755
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13728580 gcgacatgaaattttagatgcagatggtatttgttctccaggt 13728538
Score = 323 bits (163), Expect = 2e-85
Identities = 163/163 (100%)
Strand = Plus / Plus
Query: 593 aggctttgggcgttgccttgtatataaaaatgctaaatgtacattgaagcgatataccaa 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13823639 aggctttgggcgttgccttgtatataaaaatgctaaatgtacattgaagcgatataccaa 13823698
Query: 653 tcagacttttgataaagtgatggggccagtgttggatgctgctacaagaaaacccatctg 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13823699 tcagacttttgataaagtgatggggccagtgttggatgctgctacaagaaaacccatctg 13823758
Query: 713 gcgacatgaaattttagatgcagatggtatttgttctccaggt 755
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13823759 gcgacatgaaattttagatgcagatggtatttgttctccaggt 13823801
Score = 323 bits (163), Expect = 2e-85
Identities = 163/163 (100%)
Strand = Plus / Minus
Query: 593 aggctttgggcgttgccttgtatataaaaatgctaaatgtacattgaagcgatataccaa 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13949837 aggctttgggcgttgccttgtatataaaaatgctaaatgtacattgaagcgatataccaa 13949778
Query: 653 tcagacttttgataaagtgatggggccagtgttggatgctgctacaagaaaacccatctg 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13949777 tcagacttttgataaagtgatggggccagtgttggatgctgctacaagaaaacccatctg 13949718
Query: 713 gcgacatgaaattttagatgcagatggtatttgttctccaggt 755
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13949717 gcgacatgaaattttagatgcagatggtatttgttctccaggt 13949675
Score = 287 bits (145), Expect = 9e-75
Identities = 145/145 (100%)
Strand = Plus / Minus
Query: 872 ctacaaaggagcgacggattcatatatcgaaaaagtgatgatatcttcgaatgccgaaga 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13724747 ctacaaaggagcgacggattcatatatcgaaaaagtgatgatatcttcgaatgccgaaga 13724688
Query: 932 tgcttttctgatcaaaatgctgctgagacagacaaggcgtccagagattggagacaagtt 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13724687 tgcttttctgatcaaaatgctgctgagacagacaaggcgtccagagattggagacaagtt 13724628
Query: 992 tagcagtcgtcatgggcaaaaaggt 1016
|||||||||||||||||||||||||
Sbjct: 13724627 tagcagtcgtcatgggcaaaaaggt 13724603
Score = 287 bits (145), Expect = 9e-75
Identities = 145/145 (100%)
Strand = Plus / Plus
Query: 872 ctacaaaggagcgacggattcatatatcgaaaaagtgatgatatcttcgaatgccgaaga 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13827593 ctacaaaggagcgacggattcatatatcgaaaaagtgatgatatcttcgaatgccgaaga 13827652
Query: 932 tgcttttctgatcaaaatgctgctgagacagacaaggcgtccagagattggagacaagtt 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13827653 tgcttttctgatcaaaatgctgctgagacagacaaggcgtccagagattggagacaagtt 13827712
Query: 992 tagcagtcgtcatgggcaaaaaggt 1016
|||||||||||||||||||||||||
Sbjct: 13827713 tagcagtcgtcatgggcaaaaaggt 13827737
Score = 287 bits (145), Expect = 9e-75
Identities = 145/145 (100%)
Strand = Plus / Minus
Query: 872 ctacaaaggagcgacggattcatatatcgaaaaagtgatgatatcttcgaatgccgaaga 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13945884 ctacaaaggagcgacggattcatatatcgaaaaagtgatgatatcttcgaatgccgaaga 13945825
Query: 932 tgcttttctgatcaaaatgctgctgagacagacaaggcgtccagagattggagacaagtt 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13945824 tgcttttctgatcaaaatgctgctgagacagacaaggcgtccagagattggagacaagtt 13945765
Query: 992 tagcagtcgtcatgggcaaaaaggt 1016
|||||||||||||||||||||||||
Sbjct: 13945764 tagcagtcgtcatgggcaaaaaggt 13945740
Score = 252 bits (127), Expect = 5e-64
Identities = 130/131 (99%)
Strand = Plus / Plus
Query: 257 agataccacccacttggagattgaacccttcactcttcttggcgtttgtgctggcctgat 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13739212 agataccacccacttggagattgaacccttcactcttcttggcgtttgtgctggcctgat 13739271
Query: 317 cccataccctcatcataaccagtccccaagaaacacatatcagtgtgccatggggaaaca 376
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 13739272 cccataccctcatcataaccagtccccgagaaacacatatcagtgtgccatggggaaaca 13739331
Query: 377 agccatgggta 387
|||||||||||
Sbjct: 13739332 agccatgggta 13739342
Score = 252 bits (127), Expect = 5e-64
Identities = 130/131 (99%)
Strand = Plus / Minus
Query: 257 agataccacccacttggagattgaacccttcactcttcttggcgtttgtgctggcctgat 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13962249 agataccacccacttggagattgaacccttcactcttcttggcgtttgtgctggcctgat 13962190
Query: 317 cccataccctcatcataaccagtccccaagaaacacatatcagtgtgccatggggaaaca 376
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 13962189 cccataccctcatcataaccagtccccgagaaacacatatcagtgtgccatggggaaaca 13962130
Query: 377 agccatgggta 387
|||||||||||
Sbjct: 13962129 agccatgggta 13962119
Score = 240 bits (121), Expect = 2e-60
Identities = 121/121 (100%)
Strand = Plus / Minus
Query: 751 caggtgagaaagtggagaacaagcaagtgcttgtcaataagtccatgcccacagtgactc 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13726426 caggtgagaaagtggagaacaagcaagtgcttgtcaataagtccatgcccacagtgactc 13726367
Query: 811 agatccccttggaaggaagtaatgttccacagcagccgcagtacaaagatgtgcccatca 870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13726366 agatccccttggaaggaagtaatgttccacagcagccgcagtacaaagatgtgcccatca 13726307
Query: 871 c 871
|
Sbjct: 13726306 c 13726306
Score = 240 bits (121), Expect = 2e-60
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 751 caggtgagaaagtggagaacaagcaagtgcttgtcaataagtccatgcccacagtgactc 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13825913 caggtgagaaagtggagaacaagcaagtgcttgtcaataagtccatgcccacagtgactc 13825972
Query: 811 agatccccttggaaggaagtaatgttccacagcagccgcagtacaaagatgtgcccatca 870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13825973 agatccccttggaaggaagtaatgttccacagcagccgcagtacaaagatgtgcccatca 13826032
Query: 871 c 871
|
Sbjct: 13826033 c 13826033
Score = 240 bits (121), Expect = 2e-60
Identities = 121/121 (100%)
Strand = Plus / Minus
Query: 751 caggtgagaaagtggagaacaagcaagtgcttgtcaataagtccatgcccacagtgactc 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13947563 caggtgagaaagtggagaacaagcaagtgcttgtcaataagtccatgcccacagtgactc 13947504
Query: 811 agatccccttggaaggaagtaatgttccacagcagccgcagtacaaagatgtgcccatca 870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13947503 agatccccttggaaggaagtaatgttccacagcagccgcagtacaaagatgtgcccatca 13947444
Query: 871 c 871
|
Sbjct: 13947443 c 13947443
Score = 230 bits (116), Expect = 2e-57
Identities = 116/116 (100%)
Strand = Plus / Minus
Query: 1285 gtgagcccttagaagcctacatctattttggccccgtgtactaccagaaactgaaacaca 1344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13697467 gtgagcccttagaagcctacatctattttggccccgtgtactaccagaaactgaaacaca 13697408
Query: 1345 tggtgctagataagatgcatgcccgggcccgaggaccacgagctgtcctcaccagg 1400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13697407 tggtgctagataagatgcatgcccgggcccgaggaccacgagctgtcctcaccagg 13697352
Score = 230 bits (116), Expect = 2e-57
Identities = 116/116 (100%)
Strand = Plus / Minus
Query: 1285 gtgagcccttagaagcctacatctattttggccccgtgtactaccagaaactgaaacaca 1344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13918596 gtgagcccttagaagcctacatctattttggccccgtgtactaccagaaactgaaacaca 13918537
Query: 1345 tggtgctagataagatgcatgcccgggcccgaggaccacgagctgtcctcaccagg 1400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13918536 tggtgctagataagatgcatgcccgggcccgaggaccacgagctgtcctcaccagg 13918481
Score = 214 bits (108), Expect = 1e-52
Identities = 108/108 (100%)
Strand = Plus / Minus
Query: 1013 aggtgtctgtggcttgatcgtccctcaagaagacatgccattttgtgattctggcatctg 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13705139 aggtgtctgtggcttgatcgtccctcaagaagacatgccattttgtgattctggcatctg 13705080
Query: 1073 tcccgacatcatcatgaacccccatggcttcccatctcgaatgacggt 1120
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13705079 tcccgacatcatcatgaacccccatggcttcccatctcgaatgacggt 13705032
Score = 214 bits (108), Expect = 1e-52
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 1013 aggtgtctgtggcttgatcgtccctcaagaagacatgccattttgtgattctggcatctg 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13809030 aggtgtctgtggcttgatcgtccctcaagaagacatgccattttgtgattctggcatctg 13809089
Query: 1073 tcccgacatcatcatgaacccccatggcttcccatctcgaatgacggt 1120
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13809090 tcccgacatcatcatgaacccccatggcttcccatctcgaatgacggt 13809137
Score = 214 bits (108), Expect = 1e-52
Identities = 108/108 (100%)
Strand = Plus / Minus
Query: 1013 aggtgtctgtggcttgatcgtccctcaagaagacatgccattttgtgattctggcatctg 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13926268 aggtgtctgtggcttgatcgtccctcaagaagacatgccattttgtgattctggcatctg 13926209
Query: 1073 tcccgacatcatcatgaacccccatggcttcccatctcgaatgacggt 1120
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13926208 tcccgacatcatcatgaacccccatggcttcccatctcgaatgacggt 13926161
Score = 200 bits (101), Expect = 2e-48
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 156 aggaattttgaagatttcttacatgagagtctggttgaatacttagatgtgaatgaagaa 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13733725 aggaattttgaagatttcttacatgagagtctggttgaatacttagatgtgaatgaagaa 13733784
Query: 216 aatgattgtaacattgcactctatgaacatacaattaataa 256
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 13733785 aatgattgtaacattgcactctatgaacatacaattaataa 13733825
Score = 200 bits (101), Expect = 2e-48
Identities = 101/101 (100%)
Strand = Plus / Minus
Query: 156 aggaattttgaagatttcttacatgagagtctggttgaatacttagatgtgaatgaagaa 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13967735 aggaattttgaagatttcttacatgagagtctggttgaatacttagatgtgaatgaagaa 13967676
Query: 216 aatgattgtaacattgcactctatgaacatacaattaataa 256
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 13967675 aatgattgtaacattgcactctatgaacatacaattaataa 13967635
Score = 155 bits (78), Expect = 9e-35
Identities = 78/78 (100%)
Strand = Plus / Minus
Query: 81 agaccctacataattgttaagaaacaaaagcctgctgtcacaaataagcatatggaagag 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13968509 agaccctacataattgttaagaaacaaaagcctgctgtcacaaataagcatatggaagag 13968450
Query: 141 ctggctcagggatacagg 158
||||||||||||||||||
Sbjct: 13968449 ctggctcagggatacagg 13968432
Score = 131 bits (66), Expect = 1e-27
Identities = 78/82 (95%)
Strand = Plus / Minus
Query: 1 actaaactgcagccctcgagtgagggagatggcagggtccctgcttccgccgagaagcac 60
||||||||||||||| | | |||||||||||||||||||||||||||||| |||||||||
Sbjct: 13969654 actaaactgcagcccccaaatgagggagatggcagggtccctgcttccgctgagaagcac 13969595
Query: 61 aagaagccgccagggttccaag 82
||||||||||||||||||||||
Sbjct: 13969594 aagaagccgccagggttccaag 13969573
Score = 83.8 bits (42), Expect = 3e-13
Identities = 42/42 (100%)
Strand = Plus / Minus
Query: 1573 ggtgccattactgcaagtcgtcctgccacgtgtcctccctcc 1614
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13688524 ggtgccattactgcaagtcgtcctgccacgtgtcctccctcc 13688483
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 48,687,282
Number of extensions: 234
Number of successful extensions: 234
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 234
Number of HSP's successfully gapped: 29
Length of query: 1617
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1595
Effective length of database: 2,808,408,574
Effective search space: 4479411675530
Effective search space used: 4479411675530
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)