Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014073
(1101 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_539483.2| PREDICTED: similar to src family associated pho... 488 e-138
Alignment gi|XP_537665.2| PREDICTED: similar to src family associated pho... 196 4e-50
Alignment gi|XP_542503.2| PREDICTED: similar to SWA-70 protein [Canis fam... 53 5e-07
Alignment gi|XP_541159.2| PREDICTED: similar to CNKSR family member 3 [Ca... 51 2e-06
Alignment gi|XP_546379.2| PREDICTED: similar to myosin X [Canis familiari... 50 3e-06
Alignment gi|XP_857200.1| PREDICTED: similar to Cytohesin 1 (SEC7 homolog... 50 5e-06
Alignment gi|XP_848819.1| PREDICTED: similar to Cytohesin 1 (SEC7 homolog... 50 5e-06
Alignment gi|XP_857113.1| PREDICTED: similar to Cytohesin 1 (SEC7 homolog... 50 5e-06
Alignment gi|XP_857072.1| PREDICTED: similar to Cytohesin 1 (SEC7 homolog... 50 5e-06
Alignment gi|XP_857032.1| PREDICTED: similar to Cytohesin 1 (SEC7 homolog... 50 5e-06
>ref|XP_539483.2| PREDICTED: similar to src family associated phosphoprotein 2 [Canis
familiaris].
Length = 359
Score = 488 bits (1256), Expect = e-138
Identities = 235/257 (91%), Positives = 246/257 (95%), Gaps = 1/257 (0%)
Frame = +1
Query: 205 MPNPSSTSSPYPLPEEIRNLLADVETFVADILKGENLSKKAKEKRDSLIKKLKDVKSIYL 384
MPNPSSTSSPYPLPEEIRNLLADVETFVAD L+GENLSKKAKEKR+SLIKK+KDVKS YL
Sbjct: 1 MPNPSSTSSPYPLPEEIRNLLADVETFVADTLRGENLSKKAKEKRESLIKKIKDVKSTYL 60
Query: 385 QEFQDKGDAEDGEEYDDPFAGPPDTVSLASERYDKDDEA-SDGNQFPPIAAQDLPFVLKS 561
QEFQDKGDAEDGEEYDDPFAG DT+SLASERYDKDDEA S+GNQFPPIAAQDLPFVLK+
Sbjct: 61 QEFQDKGDAEDGEEYDDPFAGASDTMSLASERYDKDDEAHSEGNQFPPIAAQDLPFVLKA 120
Query: 562 GYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAMDGYSVRMNNTLRKD 741
GYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFA+DGY+VRMNNTLRKD
Sbjct: 121 GYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYNVRMNNTLRKD 180
Query: 742 GKKDCCFEISAPDKRIYQFTAASPKDAEEWVQQLQFVLQDMGSDVIPEEEDERGELYDDV 921
GKKDCCFEISAPDKRIYQFTAASPKDAEEWVQQL+FVLQDMGSDVIPE++DERGELYDDV
Sbjct: 181 GKKDCCFEISAPDKRIYQFTAASPKDAEEWVQQLKFVLQDMGSDVIPEDDDERGELYDDV 240
Query: 922 DHPLPVGSSPARGQPAD 972
DHPLP S PA QP D
Sbjct: 241 DHPLPTSSPPASSQPTD 257
>ref|XP_537665.2| PREDICTED: similar to src family associated phosphoprotein 1 [Canis
familiaris].
Length = 365
Score = 196 bits (497), Expect = 4e-50
Identities = 101/230 (43%), Positives = 145/230 (63%), Gaps = 10/230 (4%)
Frame = +1
Query: 265 LADVETFVADILKGENLSKKAKEKRDSLIKKLKDVKSIYLQEFQDKGDAEDGEEY----- 429
L D E F+A+ L+ ENLS A++ RD +++ + +K+ Y + Q +G + E Y
Sbjct: 16 LLDAEEFLAEGLRNENLSTTARDHRDHILRGFQQIKTRYYWDLQPQG-GDQAESYLGQDS 74
Query: 430 -DDPFAGPPDTVSLASERYDKDDEASDGNQFPPIAAQDLPFVLKSGYLEKRRKDHSFLGF 606
DD +G + L S+ D +G + AQ+L ++K GYLEK+ KDHSF G
Sbjct: 75 SDDNHSGTHG-LPLTSDAPFLPDYQDEGMEDITRGAQELDNIIKQGYLEKKSKDHSFFGS 133
Query: 607 EWQKRWCALSKTVFYYYGSDKDKQQKGEFAMDGYSVRMNNTLRKDGKKDCCFEISAPDKR 786
EWQKRWC +S+ +FYYY ++K KQ KG F + GYSVRM LRKD KK+ CFE+++ D+R
Sbjct: 134 EWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYSVRMAPYLRKDSKKESCFELTSQDRR 193
Query: 787 IYQFTAASPKDAEEWVQQLQFVLQDMGSDVIP----EEEDERGELYDDVD 924
Y+FTAA+P +A +WV Q+ F+L+D+ S IP EEE+E E YDD+D
Sbjct: 194 SYEFTAANPAEARDWVDQISFLLKDLSSLTIPCEDEEEEEEEEETYDDID 243
>ref|XP_542503.2| PREDICTED: similar to SWA-70 protein [Canis familiaris].
Length = 666
Score = 53.1 bits (126), Expect = 5e-07
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Frame = +1
Query: 550 VLKSGYLEK---RRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAMDGYSVRM 720
VLK GY+ K RRK+ W +RW L + YY S+ K +KG+ +D + +
Sbjct: 292 VLKQGYMMKKGHRRKN-------WTERWFVLKPNIISYYVSEDLKDKKGDILLD-ENCCV 343
Query: 721 NNTLRKDGKKDCCFEISAPDKRIYQFTAASPKDAEEWVQQLQFVLQDMGSDVIPEEEDER 900
+ KDGKK C F I DK ++ +A+ K +EW+Q + + + P ++ R
Sbjct: 344 ESLPDKDGKK-CLFLIKCFDK-TFEISASDKKKKQEWIQAIHSTIHLLKLGSPPPHKEAR 401
>ref|XP_541159.2| PREDICTED: similar to CNKSR family member 3 [Canis familiaris].
Length = 1069
Score = 50.8 bits (120), Expect = 2e-06
Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 7/155 (4%)
Frame = +1
Query: 526 IAAQDLPFVLKSGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAMDG 705
I+ +DL G+L K+++ +FL +W+K W L T Y+Y + ++ G +
Sbjct: 672 ISCKDLGHADCQGWLYKKKEKGTFLSNKWKKFWVVLKGTSLYWYSNQMAEKADGFVNLPD 731
Query: 706 YSVRMNNTLRKDGKKDCCFEISAPDKRIYQFTAASPKDAEEWVQQLQFVLQDMGSDVIPE 885
+SV + KK F+IS P + + F A + ++ W+ +L + S E
Sbjct: 732 FSVER----ASECKKKHAFKISHPQIKTFFFAAENAQEMSVWLNKLGLAVIHHESATKDE 787
Query: 886 E---EDERGELYDDVDHPLPVGS----SPARGQPA 969
E E E+ + V+ P P S SP Q A
Sbjct: 788 ECYSESEQEDPEIAVETPPPPYSAETFSPLAAQQA 822
>ref|XP_546379.2| PREDICTED: similar to myosin X [Canis familiaris].
Length = 2223
Score = 50.4 bits (119), Expect = 3e-06
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 1/132 (0%)
Frame = +1
Query: 553 LKSGYLEKRRKDHSFLGFE-WQKRWCALSKTVFYYYGSDKDKQQKGEFAMDGYSVRMNNT 729
LK G+L K+ S L W+KRW L ++ Y+ +D +++ KG + ++NT
Sbjct: 1380 LKQGWLHKKGGGSSTLSRRNWKKRWFVLRQSKLMYFENDSEEKLKGTLEVRAAREIIDNT 1439
Query: 730 LRKDGKKDCCFEISAPDKRIYQFTAASPKDAEEWVQQLQFVLQDMGSDVIPEEEDERGEL 909
+++G +I D R + A SP+DA +W L S V + E E+
Sbjct: 1440 SKENG-----IDIIMAD-RTFHLIAESPEDASQWFSVL--------SQVHASTDQEIREM 1485
Query: 910 YDDVDHPLPVGS 945
+D+ +P G+
Sbjct: 1486 HDEQANPQNAGT 1497
>ref|XP_857200.1| PREDICTED: similar to Cytohesin 1 (SEC7 homolog B2-1) isoform 5
[Canis familiaris].
Length = 399
Score = 49.7 bits (117), Expect = 5e-06
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 21/97 (21%)
Frame = +1
Query: 610 WQKRWCALSKTVFYYYGSDKDKQQKGEFAMDGYSVRMNNTLRKDGKKDCCFEISAPDKR- 786
W++RW L+ YY+ DK+ +G ++ S+R +D KK CFE+ PD +
Sbjct: 279 WKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIRE----VEDSKKPNCFELYIPDNKD 334
Query: 787 --------------------IYQFTAASPKDAEEWVQ 837
+Y+ +A +P++ EEW++
Sbjct: 335 QVIKACKTEADGRVVEGNHTVYRISAPTPEEKEEWIK 371
>ref|XP_848819.1| PREDICTED: similar to Cytohesin 1 (SEC7 homolog B2-1) isoform 1
[Canis familiaris].
Length = 400
Score = 49.7 bits (117), Expect = 5e-06
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 21/97 (21%)
Frame = +1
Query: 610 WQKRWCALSKTVFYYYGSDKDKQQKGEFAMDGYSVRMNNTLRKDGKKDCCFEISAPDKR- 786
W++RW L+ YY+ DK+ +G ++ S+R +D KK CFE+ PD +
Sbjct: 280 WKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIRE----VEDSKKPNCFELYIPDNKD 335
Query: 787 --------------------IYQFTAASPKDAEEWVQ 837
+Y+ +A +P++ EEW++
Sbjct: 336 QVIKACKTEADGRVVEGNHTVYRISAPTPEEKEEWIK 372
>ref|XP_857113.1| PREDICTED: similar to Cytohesin 1 (SEC7 homolog B2-1) isoform 4
[Canis familiaris].
Length = 404
Score = 49.7 bits (117), Expect = 5e-06
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 21/97 (21%)
Frame = +1
Query: 610 WQKRWCALSKTVFYYYGSDKDKQQKGEFAMDGYSVRMNNTLRKDGKKDCCFEISAPDKR- 786
W++RW L+ YY+ DK+ +G ++ S+R +D KK CFE+ PD +
Sbjct: 309 WKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIRE----VEDSKKPNCFELYIPDNKD 364
Query: 787 --------------------IYQFTAASPKDAEEWVQ 837
+Y+ +A +P++ EEW++
Sbjct: 365 QVIKACKTEADGRVVEGNHTVYRISAPTPEEKEEWIK 401
>ref|XP_857072.1| PREDICTED: similar to Cytohesin 1 (SEC7 homolog B2-1) isoform 3
[Canis familiaris].
Length = 395
Score = 49.7 bits (117), Expect = 5e-06
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 21/97 (21%)
Frame = +1
Query: 610 WQKRWCALSKTVFYYYGSDKDKQQKGEFAMDGYSVRMNNTLRKDGKKDCCFEISAPDKR- 786
W++RW L+ YY+ DK+ +G ++ S+R +D KK CFE+ PD +
Sbjct: 300 WKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIRE----VEDSKKPNCFELYIPDNKD 355
Query: 787 --------------------IYQFTAASPKDAEEWVQ 837
+Y+ +A +P++ EEW++
Sbjct: 356 QVIKACKTEADGRVVEGNHTVYRISAPTPEEKEEWIK 392
>ref|XP_857032.1| PREDICTED: similar to Cytohesin 1 (SEC7 homolog B2-1) isoform 2
[Canis familiaris].
Length = 413
Score = 49.7 bits (117), Expect = 5e-06
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 21/97 (21%)
Frame = +1
Query: 610 WQKRWCALSKTVFYYYGSDKDKQQKGEFAMDGYSVRMNNTLRKDGKKDCCFEISAPDKR- 786
W++RW L+ YY+ DK+ +G ++ S+R +D KK CFE+ PD +
Sbjct: 318 WKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIRE----VEDSKKPNCFELYIPDNKD 373
Query: 787 --------------------IYQFTAASPKDAEEWVQ 837
+Y+ +A +P++ EEW++
Sbjct: 374 QVIKACKTEADGRVVEGNHTVYRISAPTPEEKEEWIK 410
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,385,227
Number of extensions: 949103
Number of successful extensions: 4700
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 4670
Number of HSP's successfully gapped: 10
Length of query: 367
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 263
Effective length of database: 15,407,560
Effective search space: 4052188280
Effective search space used: 4052188280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-014073
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014073
(1101 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033303.1| src kinase-associated phosphoprotein 2 [Bos ... 487 e-138
Alignment gi|XP_002695990.1| PREDICTED: src kinase associated phosphoprot... 194 9e-50
Alignment gi|NP_001073766.2| switch-associated protein 70 [Bos taurus]. 53 5e-07
Alignment gi|XP_002690397.1| PREDICTED: connector enhancer of kinase supp... 52 9e-07
Alignment gi|XP_595033.4| PREDICTED: interaction protein for cytohesin ex... 52 9e-07
Alignment gi|XP_001789660.1| PREDICTED: ArfGAP with RhoGAP domain, ankyri... 50 5e-06
Alignment gi|NP_776819.1| myosin-X [Bos taurus]. 49 8e-06
>ref|NP_001033303.1| src kinase-associated phosphoprotein 2 [Bos taurus].
Length = 358
Score = 487 bits (1253), Expect(2) = e-138
Identities = 235/257 (91%), Positives = 247/257 (96%), Gaps = 1/257 (0%)
Frame = +1
Query: 205 MPNPSSTSSPYPLPEEIRNLLADVETFVADILKGENLSKKAKEKRDSLIKKLKDVKSIYL 384
MPNPSS S+PYPLPEEIRNLLADVETFVADIL+GENLSKKAKEKRD+L+KK+KDVKSIYL
Sbjct: 1 MPNPSSISAPYPLPEEIRNLLADVETFVADILRGENLSKKAKEKRDALVKKIKDVKSIYL 60
Query: 385 QEFQDKGDAEDGEEYDDPFAGPPDTVSLASERYDKDDEA-SDGNQFPPIAAQDLPFVLKS 561
QE QDKGDAEDGEEYDDPFAGPPDT+SLASERYDKDDEA SDGNQFPPIAAQDLPFVLK+
Sbjct: 61 QESQDKGDAEDGEEYDDPFAGPPDTISLASERYDKDDEAPSDGNQFPPIAAQDLPFVLKA 120
Query: 562 GYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAMDGYSVRMNNTLRKD 741
GYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFA+DGY+VRMNNTLRKD
Sbjct: 121 GYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYNVRMNNTLRKD 180
Query: 742 GKKDCCFEISAPDKRIYQFTAASPKDAEEWVQQLQFVLQDMGSDVIPEEEDERGELYDDV 921
GKKDCCFEISAPDKRIYQFTAASPKDAEEWVQQL FVLQDMGSDVIPE+++ERGELYDDV
Sbjct: 181 GKKDCCFEISAPDKRIYQFTAASPKDAEEWVQQLNFVLQDMGSDVIPEDDEERGELYDDV 240
Query: 922 DHPLPVGSSPARGQPAD 972
DHPLP SSP R P D
Sbjct: 241 DHPLP-SSSPTRSLPID 256
Score = 25.4 bits (54), Expect(2) = e-138
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +3
Query: 1041 KMSQDSVHHT 1070
KMSQDSVHHT
Sbjct: 280 KMSQDSVHHT 289
>ref|XP_002695990.1| PREDICTED: src kinase associated phosphoprotein 1-like [Bos
taurus].
Length = 372
Score = 194 bits (494), Expect = 9e-50
Identities = 101/247 (40%), Positives = 148/247 (59%), Gaps = 14/247 (5%)
Frame = +1
Query: 226 SSPYPLPEEIRNLLADVETFVADILKGENLSKKAKEKRDSLIKKLKDVKSIYLQEFQDKG 405
S Y + + + D E F+A+ L+ ENLS AK+ RD +++ L+ +K+ Y FQ +G
Sbjct: 4 SVSYDVCDTVHEDTNDTEDFLAEGLRNENLSAGAKDNRDHILRGLQQIKARYFWNFQPQG 63
Query: 406 DAED----GEEYDDPFAGPPDTVSLASERYDKDDEASDGNQFPPIAAQDLPFVLKSGYLE 573
+ G++ D S S+ D +G + AQ+L ++K GYLE
Sbjct: 64 GDQPENYLGQDSSDDNHSGTHGPSFTSDAPFLSDYQDEGMEDIERGAQELDNIIKQGYLE 123
Query: 574 KRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAMDGYSVRMNNTLRKDGKKD 753
K+ KDHSF G EWQKRWC +S+ +FYYY ++K KQ KG F + GYSVRM LRKD KK+
Sbjct: 124 KKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGIFLIKGYSVRMAPYLRKDYKKE 183
Query: 754 CCFEISAPDKRIYQFTAASPKDAEEWVQQLQFVLQDMGSDVIP----------EEEDERG 903
CFE+++ D+R Y+FTA+SP +A +WV Q+ F+L+D+ S IP EE++E
Sbjct: 184 YCFELTSQDRRSYEFTASSPAEARDWVNQISFLLKDLSSLTIPYEEEEEEEEEEEKEEEE 243
Query: 904 ELYDDVD 924
E+YDD+D
Sbjct: 244 EMYDDID 250
>ref|NP_001073766.2| switch-associated protein 70 [Bos taurus].
Length = 585
Score = 52.8 bits (125), Expect = 5e-07
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Frame = +1
Query: 550 VLKSGYLEK---RRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAMDGYSVRM 720
VLK GY+ K RRK+ W +RW L + YY S+ K +KG+ +D + +
Sbjct: 211 VLKQGYMIKKGHRRKN-------WTERWFVLKPNIISYYVSEDLKDKKGDILLD-ENCCV 262
Query: 721 NNTLRKDGKKDCCFEISAPDKRIYQFTAASPKDAEEWVQQLQFVLQDMGSDVIPEEEDER 900
+ KDGKK C F I DK ++ +A+ K +EW+Q + + + P ++ R
Sbjct: 263 ESLPDKDGKK-CLFLIKCFDK-TFEISASDKKKKQEWIQAIHSTIHLLKLGSPPPHKEAR 320
>ref|XP_002690397.1| PREDICTED: connector enhancer of kinase suppressor of ras 2-like
[Bos taurus].
Length = 463
Score = 52.0 bits (123), Expect = 9e-07
Identities = 32/137 (23%), Positives = 64/137 (46%)
Frame = +1
Query: 526 IAAQDLPFVLKSGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAMDG 705
I+ +DL G+L K+++ +FLG +W+K W L + Y+Y + ++ G +
Sbjct: 34 ISCKDLGHADCQGWLYKKKEKGTFLGNKWKKFWVVLKGSSLYWYSNQLAEKADGFVNLPD 93
Query: 706 YSVRMNNTLRKDGKKDCCFEISAPDKRIYQFTAASPKDAEEWVQQLQFVLQDMGSDVIPE 885
++V + KK F+IS P + + F A + ++ W+ +L +++ PE
Sbjct: 94 FTVEK----ASECKKKHAFKISHPQIKTFYFAAENVQEMNLWLNKLGL------AEIHPE 143
Query: 886 EEDERGELYDDVDHPLP 936
+ E Y + + P
Sbjct: 144 STSKDEECYSESEQEDP 160
>ref|XP_595033.4| PREDICTED: interaction protein for cytohesin exchange factors
1-like [Bos taurus].
Length = 503
Score = 52.0 bits (123), Expect = 9e-07
Identities = 32/137 (23%), Positives = 64/137 (46%)
Frame = +1
Query: 526 IAAQDLPFVLKSGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAMDG 705
I+ +DL G+L K+++ +FLG +W+K W L + Y+Y + ++ G +
Sbjct: 74 ISCKDLGHADCQGWLYKKKEKGTFLGNKWKKFWVVLKGSSLYWYSNQLAEKADGFVNLPD 133
Query: 706 YSVRMNNTLRKDGKKDCCFEISAPDKRIYQFTAASPKDAEEWVQQLQFVLQDMGSDVIPE 885
++V + KK F+IS P + + F A + ++ W+ +L +++ PE
Sbjct: 134 FTVEK----ASECKKKHAFKISHPQIKTFYFAAENVQEMNLWLNKLGL------AEIHPE 183
Query: 886 EEDERGELYDDVDHPLP 936
+ E Y + + P
Sbjct: 184 STSKDEECYSESEQEDP 200
>ref|XP_001789660.1| PREDICTED: ArfGAP with RhoGAP domain, ankyrin repeat and PH domain
1 isoform 1 [Bos taurus].
Length = 1455
Score = 49.7 bits (117), Expect = 5e-06
Identities = 65/240 (27%), Positives = 97/240 (40%), Gaps = 12/240 (5%)
Frame = +1
Query: 163 FSTGPSPARSALPDMPNPSSTSSPYPLPEEIRNLLADVETFVADILKGENLSKKAKEKRD 342
F GP SA P P P P+ LP E + D ++KK +E
Sbjct: 198 FPRGPPQPLSA-PCSP-PEVPPKPHRLPPEFDDSDYDEVPEEGPRAPAAVMTKK-EEPPA 254
Query: 343 SLIKKLKDVKSIYLQEFQDKGDAEDGEEYDDPFA------GPPDTVSLASE------RYD 486
S + + V S+ L E +D + G+E +D +A G T SL+S +
Sbjct: 255 SQVPRAVRVASL-LSEGEDLSGDDQGDEDEDDYAYERVPNGDWHTSSLSSSLPSSLLTPE 313
Query: 487 KDDEASDGNQFPPIAAQDLPFVLKSGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSD 666
DG P+ P V+K+G+L+K S++ +QKRW L Y+ S+
Sbjct: 314 LPPHPMDGL---PVGPTPTPLVIKAGWLDKNPPQGSYI---YQKRWVRLDANHLRYFDSN 367
Query: 667 KDKQQKGEFAMDGYSVRMNNTLRKDGKKDCCFEISAPDKRIYQFTAASPKDAEEWVQQLQ 846
KD K + S R D FE+ + R + F A S + +EW+Q LQ
Sbjct: 368 KDAYSKRFVPVACIS-------RVAAIGDQKFEV-ITNNRTFAFRAESDAERKEWMQALQ 419
>ref|NP_776819.1| myosin-X [Bos taurus].
Length = 2052
Score = 48.9 bits (115), Expect = 8e-06
Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 1/127 (0%)
Frame = +1
Query: 553 LKSGYLEKRRKDHSFLGFE-WQKRWCALSKTVFYYYGSDKDKQQKGEFAMDGYSVRMNNT 729
LK G+L K+ S L W+KRW L + Y+ +D +++ KG + ++NT
Sbjct: 1208 LKQGWLHKKGGGSSTLSRRNWKKRWFVLRQAKLMYFENDSEEKLKGTVEVRAAKEIIDNT 1267
Query: 730 LRKDGKKDCCFEISAPDKRIYQFTAASPKDAEEWVQQLQFVLQDMGSDVIPEEEDERGEL 909
+++G +I D R + A SP+DA +W L S V + E E+
Sbjct: 1268 SKENG-----IDIIMAD-RTFHLIAESPEDASQWFSVL--------SQVHASTDQEIREM 1313
Query: 910 YDDVDHP 930
+D+ +P
Sbjct: 1314 HDEQANP 1320
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,775,409
Number of extensions: 923821
Number of successful extensions: 4430
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 4392
Number of HSP's successfully gapped: 8
Length of query: 367
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 263
Effective length of database: 14,240,222
Effective search space: 3745178386
Effective search space used: 3745178386
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014073
(1101 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361387.1| PREDICTED: src kinase-associated phosphoprot... 526 e-150
Alignment gi|XP_003134893.2| PREDICTED: src kinase-associated phosphoprot... 327 9e-91
Alignment gi|XP_003131592.2| PREDICTED: src kinase-associated phosphoprot... 167 1e-41
Alignment gi|XP_003123029.2| PREDICTED: switch-associated protein 70-like... 54 2e-07
Alignment gi|XP_003356264.1| PREDICTED: connector enhancer of kinase supp... 50 2e-06
Alignment gi|XP_003129672.2| PREDICTED: arf-GAP with Rho-GAP domain, ANK ... 50 2e-06
Alignment gi|XP_003357994.1| PREDICTED: cytohesin-1 isoform 2 [Sus scrofa]. 49 4e-06
Alignment gi|XP_003357993.1| PREDICTED: cytohesin-1 isoform 1 [Sus scrofa]. 49 4e-06
>ref|XP_003361387.1| PREDICTED: src kinase-associated phosphoprotein 2-like [Sus
scrofa].
Length = 358
Score = 526 bits (1356), Expect(2) = e-150
Identities = 255/256 (99%), Positives = 255/256 (99%)
Frame = +1
Query: 205 MPNPSSTSSPYPLPEEIRNLLADVETFVADILKGENLSKKAKEKRDSLIKKLKDVKSIYL 384
MPNPSSTSSPYPLPEEIRNLLADVETFVADILKGENLSKKAKEKRDSLIKKLKDVKSIYL
Sbjct: 1 MPNPSSTSSPYPLPEEIRNLLADVETFVADILKGENLSKKAKEKRDSLIKKLKDVKSIYL 60
Query: 385 QEFQDKGDAEDGEEYDDPFAGPPDTVSLASERYDKDDEASDGNQFPPIAAQDLPFVLKSG 564
QEFQDKGDAEDGEEYDDPFAGPPDTVSLASERYDKDDEASDGNQFPPIAAQDLPFVLKSG
Sbjct: 61 QEFQDKGDAEDGEEYDDPFAGPPDTVSLASERYDKDDEASDGNQFPPIAAQDLPFVLKSG 120
Query: 565 YLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAMDGYSVRMNNTLRKDG 744
YLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAMDGYSVRMNNTLRKDG
Sbjct: 121 YLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAMDGYSVRMNNTLRKDG 180
Query: 745 KKDCCFEISAPDKRIYQFTAASPKDAEEWVQQLQFVLQDMGSDVIPEEEDERGELYDDVD 924
KKDCCFEISAPDKRIYQFTAASPKDAEEWVQQLQFVLQDMGSDVIPEEEDERGELYDDVD
Sbjct: 181 KKDCCFEISAPDKRIYQFTAASPKDAEEWVQQLQFVLQDMGSDVIPEEEDERGELYDDVD 240
Query: 925 HPLPVGSSPARGQPAD 972
HPLPVGSSP RGQPAD
Sbjct: 241 HPLPVGSSPPRGQPAD 256
Score = 25.4 bits (54), Expect(2) = e-150
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +3
Query: 1041 KMSQDSVHHT 1070
KMSQDSVHHT
Sbjct: 280 KMSQDSVHHT 289
>ref|XP_003134893.2| PREDICTED: src kinase-associated phosphoprotein 2-like [Sus
scrofa].
Length = 289
Score = 327 bits (838), Expect(2) = 9e-91
Identities = 155/157 (98%), Positives = 155/157 (98%)
Frame = +1
Query: 502 SDGNQFPPIAAQDLPFVLKSGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQ 681
S GNQFPPIAAQDLPFVLKSGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQ
Sbjct: 31 SCGNQFPPIAAQDLPFVLKSGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQ 90
Query: 682 KGEFAMDGYSVRMNNTLRKDGKKDCCFEISAPDKRIYQFTAASPKDAEEWVQQLQFVLQD 861
KGEFAMDGYSVRMNNTLRKDGKKDCCFEISAPDKRIYQFTAASPKDAEEWVQQLQFVLQD
Sbjct: 91 KGEFAMDGYSVRMNNTLRKDGKKDCCFEISAPDKRIYQFTAASPKDAEEWVQQLQFVLQD 150
Query: 862 MGSDVIPEEEDERGELYDDVDHPLPVGSSPARGQPAD 972
MGSDVIPEEEDERGELYDDVDHPLPVGSSP RGQPAD
Sbjct: 151 MGSDVIPEEEDERGELYDDVDHPLPVGSSPPRGQPAD 187
Score = 25.4 bits (54), Expect(2) = 9e-91
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +3
Query: 1041 KMSQDSVHHT 1070
KMSQDSVHHT
Sbjct: 211 KMSQDSVHHT 220
>ref|XP_003131592.2| PREDICTED: src kinase-associated phosphoprotein 1-like [Sus
scrofa].
Length = 322
Score = 167 bits (423), Expect = 1e-41
Identities = 75/137 (54%), Positives = 103/137 (75%), Gaps = 6/137 (4%)
Frame = +1
Query: 532 AQDLPFVLKSGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAMDGYS 711
AQ+L ++K GYLEK+ KDHSF G EWQKRWC +S+ +FYYY ++K KQ KG F + GY+
Sbjct: 63 AQELDNIIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYT 122
Query: 712 VRMNNTLRKDGKKDCCFEISAPDKRIYQFTAASPKDAEEWVQQLQFVLQDMGSDVIP-EE 888
VRM LRKD KK+CCFE+++ D+R Y+FTA++P +A +WV Q+ F+L+D+ S IP EE
Sbjct: 123 VRMAPYLRKDSKKECCFELTSQDRRSYEFTASNPAEARDWVDQISFLLKDLSSLTIPCEE 182
Query: 889 EDERG-----ELYDDVD 924
E+E G E+YDD+D
Sbjct: 183 EEEEGEEEEEEMYDDID 199
>ref|XP_003123029.2| PREDICTED: switch-associated protein 70-like [Sus scrofa].
Length = 585
Score = 53.9 bits (128), Expect = 2e-07
Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Frame = +1
Query: 550 VLKSGYLEK---RRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAMDGYSVRM 720
VLK GY+ K RRK+ W +RW L + YY S+ K +KG+ +D + +
Sbjct: 211 VLKQGYMMKKGHRRKN-------WTERWFVLKPNIISYYVSEDLKDKKGDILLD-ENCCV 262
Query: 721 NNTLRKDGKKDCCFEISAPDKRIYQFTAASPKDAEEWVQQLQFVLQDMGSDVIPEEEDER 900
+ +DGKK C F I DK ++ +A+ K +EW+Q +Q + + P ++ R
Sbjct: 263 ESLPDRDGKK-CLFLIKCFDK-TFEISASDKKKKQEWIQAIQSTIHLLKLGSPPPHKEAR 320
>ref|XP_003356264.1| PREDICTED: connector enhancer of kinase suppressor of ras 1 [Sus
scrofa].
Length = 699
Score = 50.4 bits (119), Expect = 2e-06
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Frame = +1
Query: 562 GYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAMDGYSVRMNNTLRKD 741
G+L R+ F+G W++ W L Y+Y +D++ +G + YS+ +D
Sbjct: 387 GWLLLRKVPGGFMGPRWRRCWFVLKGHTLYWYRQPQDEKAEGLINVSNYSLESG----QD 442
Query: 742 GKKDCCFEISAPDKRIYQFTAASPKDAEEWVQQLQFVL---QDMGSDVIPEEED--ERGE 906
KK F+++ + + F A + D +WV+ L + Q G +P EED E
Sbjct: 443 QKKKYVFQLTHDVYKPFIFAADTLTDLSKWVRHLITCISKYQSPGRASLPREEDCYSETE 502
Query: 907 LYDDVDHPLPVGSSPARGQPA 969
D D +SP+ Q A
Sbjct: 503 AEDPDDEAGSRSASPSLAQAA 523
>ref|XP_003129672.2| PREDICTED: arf-GAP with Rho-GAP domain, ANK repeat and PH
domain-containing protein 1 [Sus scrofa].
Length = 1456
Score = 50.1 bits (118), Expect = 2e-06
Identities = 65/241 (26%), Positives = 99/241 (41%), Gaps = 17/241 (7%)
Frame = +1
Query: 175 PSPARSALPDMPN---PSSTSSPYP-LPEEIRNLLADVETFVADILKGENLSKKAKEKRD 342
P P+ A+P P P S Y +PEE A V T K +E+
Sbjct: 208 PPPSPPAIPPKPLRPLPEFDDSDYDEVPEEGPGAPAAVMT-------------KKEERPA 254
Query: 343 SLIKKLKDVKSIYLQEFQDKGDAEDGEEYDD-PFAGPPD----TVSLASE------RYDK 489
S + + V S+ + + GD E+ DD + G P+ T SL+S +
Sbjct: 255 SQVPRAVRVASLLSEGEELSGDDPGDEDEDDHAYEGVPNGGWHTSSLSSALPGSLLTPEL 314
Query: 490 DDEASDGNQFPPIAAQDLPF--VLKSGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGS 663
DG PP++ P V+K+G+L+K S++ +QKRW L + Y+ S
Sbjct: 315 PPPPMDG---PPVSQDPSPVPPVIKAGWLDKNPPQGSYI---YQKRWVRLDASYLQYFDS 368
Query: 664 DKDKQQKGEFAMDGYSVRMNNTLRKDGKKDCCFEISAPDKRIYQFTAASPKDAEEWVQQL 843
+KD K + S R D FE+ + R + F A S + +EW+Q L
Sbjct: 369 NKDAYSKRFVPVACIS-------RVAAIGDQKFEV-ITNNRTFAFRAESDAERKEWIQAL 420
Query: 844 Q 846
Q
Sbjct: 421 Q 421
>ref|XP_003357994.1| PREDICTED: cytohesin-1 isoform 2 [Sus scrofa].
Length = 395
Score = 49.3 bits (116), Expect = 4e-06
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 21/97 (21%)
Frame = +1
Query: 610 WQKRWCALSKTVFYYYGSDKDKQQKGEFAMDGYSVRMNNTLRKDGKKDCCFEISAPDKR- 786
W++RW L+ YY+ DK+ +G ++ +R +D KK CFE+ PD +
Sbjct: 275 WKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLGIRE----VEDSKKPNCFELYIPDSKD 330
Query: 787 --------------------IYQFTAASPKDAEEWVQ 837
+Y+ +A SP++ EEW++
Sbjct: 331 QVIKACKTEADGRVVEGNHTVYRISAPSPEEKEEWIK 367
>ref|XP_003357993.1| PREDICTED: cytohesin-1 isoform 1 [Sus scrofa].
Length = 394
Score = 49.3 bits (116), Expect = 4e-06
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 21/97 (21%)
Frame = +1
Query: 610 WQKRWCALSKTVFYYYGSDKDKQQKGEFAMDGYSVRMNNTLRKDGKKDCCFEISAPDKR- 786
W++RW L+ YY+ DK+ +G ++ +R +D KK CFE+ PD +
Sbjct: 274 WKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLGIRE----VEDSKKPNCFELYIPDSKD 329
Query: 787 --------------------IYQFTAASPKDAEEWVQ 837
+Y+ +A SP++ EEW++
Sbjct: 330 QVIKACKTEADGRVVEGNHTVYRISAPSPEEKEEWIK 366
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,641,926
Number of extensions: 589771
Number of successful extensions: 2876
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 2847
Number of HSP's successfully gapped: 10
Length of query: 367
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 267
Effective length of database: 8,854,232
Effective search space: 2364079944
Effective search space used: 2364079944
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014073
(1101 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_061243.1| src kinase-associated phosphoprotein 2 [Mus mus... 474 e-134
Alignment gi|NP_001171370.1| src kinase-associated phosphoprotein 1 isofo... 200 1e-51
Alignment gi|NP_001171369.1| src kinase-associated phosphoprotein 1 isofo... 200 1e-51
Alignment gi|NP_001028358.1| src kinase-associated phosphoprotein 1 isofo... 200 1e-51
Alignment gi|NP_033328.3| switch-associated protein 70 [Mus musculus]. 52 6e-07
Alignment gi|NP_001164271.1| interactor protein for cytohesin exchange fa... 51 1e-06
Alignment gi|NP_001164273.1| interactor protein for cytohesin exchange fa... 51 1e-06
Alignment gi|NP_001164272.1| interactor protein for cytohesin exchange fa... 50 2e-06
Alignment gi|NP_062345.2| myosin X [Mus musculus]. 49 9e-06
Alignment gi|NP_081461.2| differentially expressed in FDCP 6 [Mus musculu... 49 9e-06
>ref|NP_061243.1| src kinase-associated phosphoprotein 2 [Mus musculus].
Length = 358
Score = 474 bits (1220), Expect = e-134
Identities = 228/257 (88%), Positives = 243/257 (94%), Gaps = 1/257 (0%)
Frame = +1
Query: 205 MPNPSSTSSPYPLPEEIRNLLADVETFVADILKGENLSKKAKEKRDSLIKKLKDVKSIYL 384
MPNPS TSSP PLPEEIRNLLADVETFVAD LKGENLSKKAKEKR+SLIKK+KDVKS+YL
Sbjct: 1 MPNPSCTSSPGPLPEEIRNLLADVETFVADTLKGENLSKKAKEKRESLIKKIKDVKSVYL 60
Query: 385 QEFQDKGDAEDGEEYDDPFAGPPDTVSLASERYDKDDEA-SDGNQFPPIAAQDLPFVLKS 561
QEFQDKGDAEDG+EYDDPFAGP DT+SLASERYDKDD+ SDGNQFPPIAAQDLPFV+K+
Sbjct: 61 QEFQDKGDAEDGDEYDDPFAGPADTISLASERYDKDDDGPSDGNQFPPIAAQDLPFVIKA 120
Query: 562 GYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAMDGYSVRMNNTLRKD 741
GYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFA+DGY VRMNNTLRKD
Sbjct: 121 GYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLRKD 180
Query: 742 GKKDCCFEISAPDKRIYQFTAASPKDAEEWVQQLQFVLQDMGSDVIPEEEDERGELYDDV 921
GKKDCCFEI APDKRIYQFTAASPKDAEEWVQQL+F+LQD+GSDVIPE+++ERGELYDDV
Sbjct: 181 GKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFILQDLGSDVIPEDDEERGELYDDV 240
Query: 922 DHPLPVGSSPARGQPAD 972
DHP V SSP R QP D
Sbjct: 241 DHPAAV-SSPQRSQPID 256
>ref|NP_001171370.1| src kinase-associated phosphoprotein 1 isoform 3 [Mus musculus].
Length = 339
Score = 200 bits (509), Expect = 1e-51
Identities = 109/240 (45%), Positives = 149/240 (62%), Gaps = 12/240 (5%)
Frame = +1
Query: 241 LPEEIRNLLADVETFVADILKGENLSKKAKEKRDSLIKKLKDVKSIYLQEFQDKGDAEDG 420
LPEEI LL D E F+A+ L+ ENLS A+++R +++ + +KS Y +FQ +G
Sbjct: 6 LPEEICWLLEDTEDFLAEGLQNENLSPGAQDQRAHILRGFQQIKSRYCWDFQPQGGDLGQ 65
Query: 421 EEYDDPFAG---PPDTVSLASERYDKDDEASDGNQFPPIAAQDLPFVLKSGYLEKRRKDH 591
+ DD +G PP L SE D +G + AQ+L V+K GYLEK+ KDH
Sbjct: 66 DGSDDNLSGTHGPP----LTSEASFWSDYQDEGIEDILRGAQELDSVIKQGYLEKKSKDH 121
Query: 592 SFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAMDGYSVRMNNTLRKDGKKDCCFEIS 771
SF G EWQKRWC +S+ +F YY ++K KQ KG F + GYSVRM LRKD KK+ CFE+
Sbjct: 122 SFFGSEWQKRWCVISRGLFLYYANEKSKQPKGTFLIKGYSVRMAPHLRKDSKKESCFELI 181
Query: 772 APDKRIYQFTAASPKDAEEWVQQLQFVLQDMGSDVIP---------EEEDERGELYDDVD 924
+ D+R Y+FTA+SP +A +WV Q+ F+L+D+ S IP EEE E E+Y+DVD
Sbjct: 182 SQDRRSYEFTASSPAEARDWVDQISFLLKDLSSLTIPFEEEEEEEEEEEKEEEEMYNDVD 241
>ref|NP_001171369.1| src kinase-associated phosphoprotein 1 isoform 2 [Mus musculus].
Length = 345
Score = 200 bits (509), Expect = 1e-51
Identities = 109/240 (45%), Positives = 149/240 (62%), Gaps = 12/240 (5%)
Frame = +1
Query: 241 LPEEIRNLLADVETFVADILKGENLSKKAKEKRDSLIKKLKDVKSIYLQEFQDKGDAEDG 420
LPEEI LL D E F+A+ L+ ENLS A+++R +++ + +KS Y +FQ +G
Sbjct: 6 LPEEICWLLEDTEDFLAEGLQNENLSPGAQDQRAHILRGFQQIKSRYCWDFQPQGGDLGQ 65
Query: 421 EEYDDPFAG---PPDTVSLASERYDKDDEASDGNQFPPIAAQDLPFVLKSGYLEKRRKDH 591
+ DD +G PP L SE D +G + AQ+L V+K GYLEK+ KDH
Sbjct: 66 DGSDDNLSGTHGPP----LTSEASFWSDYQDEGIEDILRGAQELDSVIKQGYLEKKSKDH 121
Query: 592 SFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAMDGYSVRMNNTLRKDGKKDCCFEIS 771
SF G EWQKRWC +S+ +F YY ++K KQ KG F + GYSVRM LRKD KK+ CFE+
Sbjct: 122 SFFGSEWQKRWCVISRGLFLYYANEKSKQPKGTFLIKGYSVRMAPHLRKDSKKESCFELI 181
Query: 772 APDKRIYQFTAASPKDAEEWVQQLQFVLQDMGSDVIP---------EEEDERGELYDDVD 924
+ D+R Y+FTA+SP +A +WV Q+ F+L+D+ S IP EEE E E+Y+DVD
Sbjct: 182 SQDRRSYEFTASSPAEARDWVDQISFLLKDLSSLTIPFEEEEEEEEEEEKEEEEMYNDVD 241
>ref|NP_001028358.1| src kinase-associated phosphoprotein 1 isoform 1 [Mus musculus].
Length = 355
Score = 200 bits (509), Expect = 1e-51
Identities = 109/240 (45%), Positives = 149/240 (62%), Gaps = 12/240 (5%)
Frame = +1
Query: 241 LPEEIRNLLADVETFVADILKGENLSKKAKEKRDSLIKKLKDVKSIYLQEFQDKGDAEDG 420
LPEEI LL D E F+A+ L+ ENLS A+++R +++ + +KS Y +FQ +G
Sbjct: 6 LPEEICWLLEDTEDFLAEGLQNENLSPGAQDQRAHILRGFQQIKSRYCWDFQPQGGDLGQ 65
Query: 421 EEYDDPFAG---PPDTVSLASERYDKDDEASDGNQFPPIAAQDLPFVLKSGYLEKRRKDH 591
+ DD +G PP L SE D +G + AQ+L V+K GYLEK+ KDH
Sbjct: 66 DGSDDNLSGTHGPP----LTSEASFWSDYQDEGIEDILRGAQELDSVIKQGYLEKKSKDH 121
Query: 592 SFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAMDGYSVRMNNTLRKDGKKDCCFEIS 771
SF G EWQKRWC +S+ +F YY ++K KQ KG F + GYSVRM LRKD KK+ CFE+
Sbjct: 122 SFFGSEWQKRWCVISRGLFLYYANEKSKQPKGTFLIKGYSVRMAPHLRKDSKKESCFELI 181
Query: 772 APDKRIYQFTAASPKDAEEWVQQLQFVLQDMGSDVIP---------EEEDERGELYDDVD 924
+ D+R Y+FTA+SP +A +WV Q+ F+L+D+ S IP EEE E E+Y+DVD
Sbjct: 182 SQDRRSYEFTASSPAEARDWVDQISFLLKDLSSLTIPFEEEEEEEEEEEKEEEEMYNDVD 241
>ref|NP_033328.3| switch-associated protein 70 [Mus musculus].
Length = 585
Score = 52.4 bits (124), Expect = 6e-07
Identities = 32/98 (32%), Positives = 50/98 (51%)
Frame = +1
Query: 550 VLKSGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAMDGYSVRMNNT 729
VLK GY+ K+ W +RW L + YY S+ K +KG+ +D + + +
Sbjct: 211 VLKQGYMMKKGHKRK----NWTERWFVLKPNIISYYVSEDLKDKKGDILLD-ENCCVESL 265
Query: 730 LRKDGKKDCCFEISAPDKRIYQFTAASPKDAEEWVQQL 843
KDGKK C F I DK ++ +A+ K +EW+Q +
Sbjct: 266 PDKDGKK-CLFLIKCFDK-TFEISASDKKKKQEWIQAI 301
>ref|NP_001164271.1| interactor protein for cytohesin exchange factors 1 isoform 1 [Mus
musculus].
Length = 406
Score = 51.2 bits (121), Expect = 1e-06
Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 7/153 (4%)
Frame = +1
Query: 526 IAAQDLPFVLKSGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAMDG 705
I+ +DL G+L K+++ +FL +W+K W L + Y+Y + ++ G +
Sbjct: 6 ISCKDLGHADCQGWLYKKKEKGTFLSNKWKKFWVVLKGSSLYWYSNQMAEKADGFVNLSD 65
Query: 706 YSVRMNNTLRKDGKKDCCFEISAPDKRIYQFTAASPKDAEEWVQQLQFVLQDMGSDVIPE 885
++V + KK F+I+ P + + F A + ++ W+ +L F + S E
Sbjct: 66 FTVER----ASECKKKNAFKINHPQIKAFYFAAENLQEMNVWLNKLGFAVTHQESITKDE 121
Query: 886 E---EDERGELYDDVDHPLP----VGSSPARGQ 963
E E E+ + V+ P P SSP Q
Sbjct: 122 ECYSESEQEDPEVAVEAPPPPYASTTSSPVAAQ 154
>ref|NP_001164273.1| interactor protein for cytohesin exchange factors 1 isoform 3 [Mus
musculus].
Length = 298
Score = 51.2 bits (121), Expect = 1e-06
Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 7/153 (4%)
Frame = +1
Query: 526 IAAQDLPFVLKSGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAMDG 705
I+ +DL G+L K+++ +FL +W+K W L + Y+Y + ++ G +
Sbjct: 6 ISCKDLGHADCQGWLYKKKEKGTFLSNKWKKFWVVLKGSSLYWYSNQMAEKADGFVNLSD 65
Query: 706 YSVRMNNTLRKDGKKDCCFEISAPDKRIYQFTAASPKDAEEWVQQLQFVLQDMGSDVIPE 885
++V + KK F+I+ P + + F A + ++ W+ +L F + S E
Sbjct: 66 FTVER----ASECKKKNAFKINHPQIKAFYFAAENLQEMNVWLNKLGFAVTHQESITKDE 121
Query: 886 E---EDERGELYDDVDHPLP----VGSSPARGQ 963
E E E+ + V+ P P SSP Q
Sbjct: 122 ECYSESEQEDPEVAVEAPPPPYASTTSSPVAAQ 154
>ref|NP_001164272.1| interactor protein for cytohesin exchange factors 1 isoform 2 [Mus
musculus].
Length = 302
Score = 50.4 bits (119), Expect = 2e-06
Identities = 34/140 (24%), Positives = 65/140 (46%), Gaps = 3/140 (2%)
Frame = +1
Query: 526 IAAQDLPFVLKSGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAMDG 705
I+ +DL G+L K+++ +FL +W+K W L + Y+Y + ++ G +
Sbjct: 6 ISCKDLGHADCQGWLYKKKEKGTFLSNKWKKFWVVLKGSSLYWYSNQMAEKADGFVNLSD 65
Query: 706 YSVRMNNTLRKDGKKDCCFEISAPDKRIYQFTAASPKDAEEWVQQLQFVLQDMGSDVIPE 885
++V + KK F+I+ P + + F A + ++ W+ +L F + S E
Sbjct: 66 FTVER----ASECKKKNAFKINHPQIKAFYFAAENLQEMNVWLNKLGFAVTHQESITKDE 121
Query: 886 E---EDERGELYDDVDHPLP 936
E E E+ + V+ P P
Sbjct: 122 ECYSESEQEDPEVAVEAPPP 141
>ref|NP_062345.2| myosin X [Mus musculus].
Length = 2062
Score = 48.5 bits (114), Expect = 9e-06
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 1/127 (0%)
Frame = +1
Query: 553 LKSGYLEKRRKDHSFLGFE-WQKRWCALSKTVFYYYGSDKDKQQKGEFAMDGYSVRMNNT 729
LK G+L K+ S L W+KRW L ++ Y+ +D +++ KG + ++NT
Sbjct: 1218 LKQGWLHKKGGGSSTLSRRNWKKRWFVLRQSKLMYFENDSEEKLKGTVEVRTAKEIIDNT 1277
Query: 730 LRKDGKKDCCFEISAPDKRIYQFTAASPKDAEEWVQQLQFVLQDMGSDVIPEEEDERGEL 909
+++G +I D R + A SP+DA +W L S V + E E+
Sbjct: 1278 SKENG-----IDIILAD-RTFHLIAESPEDASQWFSVL--------SQVHSSTDQEIREM 1323
Query: 910 YDDVDHP 930
+D+ +P
Sbjct: 1324 HDEQANP 1330
>ref|NP_081461.2| differentially expressed in FDCP 6 [Mus musculus].
Length = 630
Score = 48.5 bits (114), Expect = 9e-06
Identities = 29/103 (28%), Positives = 52/103 (50%)
Frame = +1
Query: 550 VLKSGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAMDGYSVRMNNT 729
VLK GYL KR L W +RW L + Y+GS++ K+++G +D + +
Sbjct: 217 VLKQGYLWKR----GHLRRNWAERWFQLQPSSLCYFGSEECKEKRGTIPLDAHCC-VEVL 271
Query: 730 LRKDGKKDCCFEISAPDKRIYQFTAASPKDAEEWVQQLQFVLQ 858
++GK+ C F + R Y+ +A+ + +EW +Q ++
Sbjct: 272 PDREGKR-CMFCVKTA-SRTYEMSASDTRQRQEWTAAIQTAIR 312
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,098,271
Number of extensions: 793468
Number of successful extensions: 3736
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 3705
Number of HSP's successfully gapped: 13
Length of query: 367
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 264
Effective length of database: 12,523,851
Effective search space: 3306296664
Effective search space used: 3306296664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014073
(1101 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003921.2| src kinase-associated phosphoprotein 2 [Homo sa... 489 e-139
Alignment gi|NP_001068567.1| src kinase-associated phosphoprotein 1 isofo... 211 1e-54
Alignment gi|NP_003717.3| src kinase-associated phosphoprotein 1 isoform ... 211 1e-54
Alignment gi|NP_055870.2| switch-associated protein 70 [Homo sapiens]. 53 6e-07
Alignment gi|NP_001124172.1| interactor protein for cytohesin exchange fa... 51 2e-06
Alignment gi|NP_001124171.1| interactor protein for cytohesin exchange fa... 51 2e-06
Alignment gi|NP_056368.1| interactor protein for cytohesin exchange facto... 51 2e-06
Alignment gi|NP_071330.3| differentially expressed in FDCP 6 homolog [Hom... 51 2e-06
Alignment gi|NP_001035207.1| arf-GAP with Rho-GAP domain, ANK repeat and ... 50 4e-06
Alignment gi|NP_059430.2| cytohesin-1 isoform 2 [Homo sapiens]. 50 5e-06
>ref|NP_003921.2| src kinase-associated phosphoprotein 2 [Homo sapiens].
Length = 359
Score = 489 bits (1258), Expect(2) = e-139
Identities = 236/257 (91%), Positives = 246/257 (95%), Gaps = 1/257 (0%)
Frame = +1
Query: 205 MPNPSSTSSPYPLPEEIRNLLADVETFVADILKGENLSKKAKEKRDSLIKKLKDVKSIYL 384
MPNPSSTSSPYPLPEEIRNLLADVETFVADILKGENLSKKAKEKR+SLIKK+KDVKSIYL
Sbjct: 1 MPNPSSTSSPYPLPEEIRNLLADVETFVADILKGENLSKKAKEKRESLIKKIKDVKSIYL 60
Query: 385 QEFQDKGDAEDGEEYDDPFAGPPDTVSLASERYDKDDEA-SDGNQFPPIAAQDLPFVLKS 561
QEFQDKGDAEDGEEYDDPFAGPPDT+SLASERYDKDDEA SDG QFPPIAAQDLPFVLK+
Sbjct: 61 QEFQDKGDAEDGEEYDDPFAGPPDTISLASERYDKDDEAPSDGAQFPPIAAQDLPFVLKA 120
Query: 562 GYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAMDGYSVRMNNTLRKD 741
GYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFA+DGYSVRMNNTLRKD
Sbjct: 121 GYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYSVRMNNTLRKD 180
Query: 742 GKKDCCFEISAPDKRIYQFTAASPKDAEEWVQQLQFVLQDMGSDVIPEEEDERGELYDDV 921
GKKDCCFEISAPDKRIYQFTAASPKDAEEWVQQL+FVLQDM SD+IPE+ DERGELYDDV
Sbjct: 181 GKKDCCFEISAPDKRIYQFTAASPKDAEEWVQQLKFVLQDMESDIIPEDYDERGELYDDV 240
Query: 922 DHPLPVGSSPARGQPAD 972
DHPLP+ + QP D
Sbjct: 241 DHPLPISNPLTSSQPID 257
Score = 25.4 bits (54), Expect(2) = e-139
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +3
Query: 1041 KMSQDSVHHT 1070
KMSQDSVHHT
Sbjct: 281 KMSQDSVHHT 290
>ref|NP_001068567.1| src kinase-associated phosphoprotein 1 isoform 2 [Homo sapiens].
Length = 358
Score = 211 bits (537), Expect = 1e-54
Identities = 107/232 (46%), Positives = 151/232 (65%), Gaps = 4/232 (1%)
Frame = +1
Query: 241 LPEEIRNLLADVETFVADILKGENLSKKAKEKRDSLIKKLKDVKSIYLQEFQDKGDAEDG 420
LPEEIR LL D E F+A+ L+ ENLS A++ RD +++ + +K+ Y +FQ +G
Sbjct: 6 LPEEIRWLLEDAEEFLAEGLRNENLSAVARDHRDHILRGFQQIKARYYWDFQPQGGDIGQ 65
Query: 421 EEYDDPFAGPPDTVSLASERYDKDDEASDGNQFPPIAAQDLPFVLKSGYLEKRRKDHSFL 600
+ DD +G +SL S+ D +G + AQ+L V+K GYLEK+ KDHSF
Sbjct: 66 DSSDDNHSGTLG-LSLTSDAPFLSDYQDEGMEDIVKGAQELDNVIKQGYLEKKSKDHSFF 124
Query: 601 GFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAMDGYSVRMNNTLRKDGKKDCCFEISAPD 780
G EWQKRWC +S+ +FYYY ++K KQ KG F + GY VRM LR+D KK+ CFE+++ D
Sbjct: 125 GSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYGVRMAPHLRRDSKKESCFELTSQD 184
Query: 781 KRIYQFTAASPKDAEEWVQQLQFVLQDMGSDVIP----EEEDERGELYDDVD 924
+R Y+FTA SP +A +WV Q+ F+L+D+ S IP EEE+E+ E YDD+D
Sbjct: 185 RRSYEFTATSPAEARDWVDQISFLLKDLSSLTIPYEEDEEEEEKEETYDDID 236
>ref|NP_003717.3| src kinase-associated phosphoprotein 1 isoform 1 [Homo sapiens].
Length = 359
Score = 211 bits (537), Expect = 1e-54
Identities = 107/232 (46%), Positives = 151/232 (65%), Gaps = 4/232 (1%)
Frame = +1
Query: 241 LPEEIRNLLADVETFVADILKGENLSKKAKEKRDSLIKKLKDVKSIYLQEFQDKGDAEDG 420
LPEEIR LL D E F+A+ L+ ENLS A++ RD +++ + +K+ Y +FQ +G
Sbjct: 6 LPEEIRWLLEDAEEFLAEGLRNENLSAVARDHRDHILRGFQQIKARYYWDFQPQGGDIGQ 65
Query: 421 EEYDDPFAGPPDTVSLASERYDKDDEASDGNQFPPIAAQDLPFVLKSGYLEKRRKDHSFL 600
+ DD +G +SL S+ D +G + AQ+L V+K GYLEK+ KDHSF
Sbjct: 66 DSSDDNHSGTLG-LSLTSDAPFLSDYQDEGMEDIVKGAQELDNVIKQGYLEKKSKDHSFF 124
Query: 601 GFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAMDGYSVRMNNTLRKDGKKDCCFEISAPD 780
G EWQKRWC +S+ +FYYY ++K KQ KG F + GY VRM LR+D KK+ CFE+++ D
Sbjct: 125 GSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYGVRMAPHLRRDSKKESCFELTSQD 184
Query: 781 KRIYQFTAASPKDAEEWVQQLQFVLQDMGSDVIP----EEEDERGELYDDVD 924
+R Y+FTA SP +A +WV Q+ F+L+D+ S IP EEE+E+ E YDD+D
Sbjct: 185 RRSYEFTATSPAEARDWVDQISFLLKDLSSLTIPYEEDEEEEEKEETYDDID 236
>ref|NP_055870.2| switch-associated protein 70 [Homo sapiens].
Length = 585
Score = 52.8 bits (125), Expect = 6e-07
Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Frame = +1
Query: 550 VLKSGYLEK---RRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAMDGYSVRM 720
VLK GY+ K RRK+ W +RW L + YY S+ K +KG+ +D + +
Sbjct: 211 VLKQGYMMKKGHRRKN-------WTERWFVLKPNIISYYVSEDLKDKKGDILLD-ENCCV 262
Query: 721 NNTLRKDGKKDCCFEISAPDKRIYQFTAASPKDAEEWVQQLQFVLQDMGSDVIPEEEDER 900
+ KDGKK C F + DK ++ +A+ K +EW+Q + + + P ++ R
Sbjct: 263 ESLPDKDGKK-CLFLVKCFDK-TFEISASDKKKKQEWIQAIHSTIHLLKLGSPPPHKEAR 320
>ref|NP_001124172.1| interactor protein for cytohesin exchange factors 1 isoform 1 [Homo
sapiens].
Length = 438
Score = 51.2 bits (121), Expect = 2e-06
Identities = 35/127 (27%), Positives = 60/127 (47%)
Frame = +1
Query: 526 IAAQDLPFVLKSGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAMDG 705
I+ +DL G+L K+++ SFL +W+K W L + Y+Y + ++ G +
Sbjct: 35 ISCKDLGHADCQGWLYKKKEKGSFLSNKWKKFWVILKGSSLYWYSNQMAEKADGFVNLPD 94
Query: 706 YSVRMNNTLRKDGKKDCCFEISAPDKRIYQFTAASPKDAEEWVQQLQFVLQDMGSDVIPE 885
++V + KK F+IS P + + F A E VQ++ L +GS VI +
Sbjct: 95 FTVER----ASECKKKHAFKISHPQIKTFYFAA-------ENVQEMNVWLNKLGSAVIHQ 143
Query: 886 EEDERGE 906
E + E
Sbjct: 144 ESTTKDE 150
>ref|NP_001124171.1| interactor protein for cytohesin exchange factors 1 isoform 1 [Homo
sapiens].
Length = 438
Score = 51.2 bits (121), Expect = 2e-06
Identities = 35/127 (27%), Positives = 60/127 (47%)
Frame = +1
Query: 526 IAAQDLPFVLKSGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAMDG 705
I+ +DL G+L K+++ SFL +W+K W L + Y+Y + ++ G +
Sbjct: 35 ISCKDLGHADCQGWLYKKKEKGSFLSNKWKKFWVILKGSSLYWYSNQMAEKADGFVNLPD 94
Query: 706 YSVRMNNTLRKDGKKDCCFEISAPDKRIYQFTAASPKDAEEWVQQLQFVLQDMGSDVIPE 885
++V + KK F+IS P + + F A E VQ++ L +GS VI +
Sbjct: 95 FTVER----ASECKKKHAFKISHPQIKTFYFAA-------ENVQEMNVWLNKLGSAVIHQ 143
Query: 886 EEDERGE 906
E + E
Sbjct: 144 ESTTKDE 150
>ref|NP_056368.1| interactor protein for cytohesin exchange factors 1 isoform 2 [Homo
sapiens].
Length = 437
Score = 51.2 bits (121), Expect = 2e-06
Identities = 35/127 (27%), Positives = 60/127 (47%)
Frame = +1
Query: 526 IAAQDLPFVLKSGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAMDG 705
I+ +DL G+L K+++ SFL +W+K W L + Y+Y + ++ G +
Sbjct: 34 ISCKDLGHADCQGWLYKKKEKGSFLSNKWKKFWVILKGSSLYWYSNQMAEKADGFVNLPD 93
Query: 706 YSVRMNNTLRKDGKKDCCFEISAPDKRIYQFTAASPKDAEEWVQQLQFVLQDMGSDVIPE 885
++V + KK F+IS P + + F A E VQ++ L +GS VI +
Sbjct: 94 FTVER----ASECKKKHAFKISHPQIKTFYFAA-------ENVQEMNVWLNKLGSAVIHQ 142
Query: 886 EEDERGE 906
E + E
Sbjct: 143 ESTTKDE 149
>ref|NP_071330.3| differentially expressed in FDCP 6 homolog [Homo sapiens].
Length = 631
Score = 50.8 bits (120), Expect = 2e-06
Identities = 30/103 (29%), Positives = 53/103 (51%)
Frame = +1
Query: 550 VLKSGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAMDGYSVRMNNT 729
VLK GYL KR L W +RW L + Y+GS++ K+++G +D + +
Sbjct: 217 VLKQGYLWKR----GHLRRNWAERWFQLQPSCLCYFGSEECKEKRGIIPLDAHCC-VEVL 271
Query: 730 LRKDGKKDCCFEISAPDKRIYQFTAASPKDAEEWVQQLQFVLQ 858
+DGK+ C F + + R Y+ +A+ + +EW +Q ++
Sbjct: 272 PDRDGKR-CMFCVKTAN-RTYEMSASDTRQRQEWTAAIQMAIR 312
>ref|NP_001035207.1| arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing
protein 1 isoform c [Homo sapiens].
Length = 1450
Score = 50.1 bits (118), Expect = 4e-06
Identities = 70/274 (25%), Positives = 107/274 (39%), Gaps = 18/274 (6%)
Frame = +1
Query: 79 PAVSGLVGTPSLPGSLXXXXXXXXXXXXFSTGPSPARSALPDMPN-PSSTSSPYPLPEEI 255
P V G P L SL S + L +P P SP P P EI
Sbjct: 156 PPVPPRTGPPRLLVSLPTKEEESLLPSLSSPPQPQSEEPLSTLPQGPPQPPSPPPCPPEI 215
Query: 256 R----NLLADVETFVADILKGEN------LSKKAKEKRDSLIKKLKDVKSIYLQEFQDKG 405
L + + D + E + K +E S + + V S+ + + G
Sbjct: 216 PPKPVRLFPEFDDSDYDEVPEEGPGAPARVMTKKEEPPPSRVPRAVRVASLLSEGEELSG 275
Query: 406 DAEDGEEYDD-PFAGPPD------TVSLASERYDKDDEASDGNQFPPIAAQDLPFVLKSG 564
D + EE DD + G P+ ++SL+ DG PP + + V+K+G
Sbjct: 276 DDQGDEEEDDHAYEGVPNGGWHTSSLSLSLPSTIAAPHPMDG---PPGGSTPVTPVIKAG 332
Query: 565 YLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAMDGYSVRMNNTLRKDG 744
+L+K S++ +QKRW L Y+ S+KD K SV + + G
Sbjct: 333 WLDKNPPQGSYI---YQKRWVRLDTDHLRYFDSNKDAYSKRFI-----SVACISHVAAIG 384
Query: 745 KKDCCFEISAPDKRIYQFTAASPKDAEEWVQQLQ 846
D FE+ + R + F A S + +EW+Q LQ
Sbjct: 385 --DQKFEV-ITNNRTFAFRAESDVERKEWMQALQ 415
>ref|NP_059430.2| cytohesin-1 isoform 2 [Homo sapiens].
Length = 397
Score = 49.7 bits (117), Expect = 5e-06
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 21/97 (21%)
Frame = +1
Query: 610 WQKRWCALSKTVFYYYGSDKDKQQKGEFAMDGYSVRMNNTLRKDGKKDCCFEISAPDKR- 786
W++RW L+ YY+ DK+ +G ++ S+R +D KK CFE+ PD +
Sbjct: 277 WKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIRE----VEDSKKPNCFELYIPDNKD 332
Query: 787 --------------------IYQFTAASPKDAEEWVQ 837
+Y+ +A +P++ EEW++
Sbjct: 333 QVIKACKTEADGRVVEGNHTVYRISAPTPEEKEEWIK 369
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,669,581
Number of extensions: 934641
Number of successful extensions: 4569
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 4536
Number of HSP's successfully gapped: 14
Length of query: 367
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 263
Effective length of database: 14,868,908
Effective search space: 3910522804
Effective search space used: 3910522804
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014073
(1101 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr18 505 e-140
gb|GL894194.2| Sus scrofa unplaced genomic scaffold ChrUScaf2078 254 9e-65
>Sscrofa_Chr18
|| Length = 61220071
Score = 505 bits (255), Expect = e-140
Identities = 258/259 (99%)
Strand = Plus / Plus
Query: 13 gggctgggccaagagtccagccgctgtggccaggacttcagcgacttccttgttgtgagc 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50270664 gggctgggccaagagtccagccgctgtggccaggacttcagcgacttccttgttgtgagc 50270723
Query: 73 cttcgcccggcagtgtccggactggtaggcacgccgtccttaccgggatcgctagcccga 132
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 50270724 cttcgcccggcagtgtccggactggtaggcacgccgtccttacagggatcgctagcccga 50270783
Query: 133 gtctaggtcgcagccacaaccccagcccgtttcagcacaggtccttcccccgcacgctcc 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50270784 gtctaggtcgcagccacaaccccagcccgtttcagcacaggtccttcccccgcacgctcc 50270843
Query: 193 gcgctccctgacatgcccaaccccagcagcacctcctctccctaccccctccccgaggaa 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50270844 gcgctccctgacatgcccaaccccagcagcacctcctctccctaccccctccccgaggaa 50270903
Query: 253 attaggaacctgttggcag 271
|||||||||||||||||||
Sbjct: 50270904 attaggaacctgttggcag 50270922
Score = 254 bits (128), Expect = 9e-65
Identities = 137/140 (97%)
Strand = Plus / Plus
Query: 858 agatatggggtccgacgttattcctgaggaggaggatgaaagaggagaattatatgatga 917
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 50372574 agatatggggtccgacgtcattcctgaggaggaggatgaaagaggagaattatatgatga 50372633
Query: 918 cgttgatcatcctctgcccgtcggcagctccccggcacgcggccagccagccgatgacga 977
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 50372634 cgttgatcatcctctgcccgtcggcagctccccgccacgcggccagccagccgatgacga 50372693
Query: 978 aatttatgaaaagctgccag 997
|||||||||| |||||||||
Sbjct: 50372694 aatttatgaagagctgccag 50372713
Score = 252 bits (127), Expect = 4e-64
Identities = 127/127 (100%)
Strand = Plus / Plus
Query: 669 agacaaacaacagaaaggtgaatttgcaatggatggctacagtgtcagaatgaataatac 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50371163 agacaaacaacagaaaggtgaatttgcaatggatggctacagtgtcagaatgaataatac 50371222
Query: 729 tcttaggaaggacggaaagaaagattgctgttttgagatctctgctccagataaacgtat 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50371223 tcttaggaaggacggaaagaaagattgctgttttgagatctctgctccagataaacgtat 50371282
Query: 789 ctatcag 795
|||||||
Sbjct: 50371283 ctatcag 50371289
Score = 214 bits (108), Expect = 8e-53
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 402 aggtgatgcagaagatggagaagaatatgatgacccttttgctgggcctccagacactgt 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50287943 aggtgatgcagaagatggagaagaatatgatgacccttttgctgggcctccagacactgt 50288002
Query: 462 ttcattagcctcagaaagatatgataaagatgatgaagcctctgatgg 509
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50288003 ttcattagcctcagaaagatatgataaagatgatgaagcctctgatgg 50288050
Score = 198 bits (100), Expect = 5e-48
Identities = 106/108 (98%)
Strand = Plus / Plus
Query: 270 agatgttgaaacatttgtggcagatatcctgaaaggggaaaatttatccaagaaagcaaa 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50280366 agatgttgaaacatttgtggcagatatcctgaaaggggaaaatttatccaagaaagcaaa 50280425
Query: 330 ggaaaagagagactcccttattaagaagctaaaagatgtgaagtctat 377
|||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 50280426 ggaaaagagagattcccttattaagaagctaaaagatgtgaaatctat 50280473
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 585 agatcacagctttctgggatttgaatggcagaaacggtggtgtgctctcagtaaaacagt 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50357970 agatcacagctttctgggatttgaatggcagaaacggtggtgtgctctcagtaaaacagt 50358029
Query: 645 gttctattactatgggagtgataaag 670
||||||||||||||||||||||||||
Sbjct: 50358030 gttctattactatgggagtgataaag 50358055
Score = 157 bits (79), Expect = 2e-35
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 508 ggaaaccagtttcctccaattgcagcacaagaccttccttttgttttaaagtctggctac 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50356943 ggaaaccagtttcctccaattgcagcacaagaccttccttttgttttaaagtctggctac 50357002
Query: 568 cttgaaaaacgcagaaaag 586
|||||||||||||||||||
Sbjct: 50357003 cttgaaaaacgcagaaaag 50357021
Score = 131 bits (66), Expect = 9e-28
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 794 agttcacggcagcttctcccaaagatgccgaagaatgggtacagcagctgcaatttgtat 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50372158 agttcacggcagcttctcccaaagatgccgaagaatgggtacagcagctgcaatttgtat 50372217
Query: 854 tacaag 859
||||||
Sbjct: 50372218 tacaag 50372223
Score = 127 bits (64), Expect = 1e-26
Identities = 74/76 (97%), Gaps = 1/76 (1%)
Strand = Plus / Minus
Query: 995 cagaggaggaagaagaaggtgatccggagaaggaggagggacaga-gaagatgagtcagg 1053
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 50418418 cagaggaggaagaggaaggtgatccggagaaggaggagggacagaggaagatgagtcagg 50418359
Query: 1054 acagcgttcatcacac 1069
||||||||||||||||
Sbjct: 50418358 acagcgttcatcacac 50418343
Score = 127 bits (64), Expect = 1e-26
Identities = 74/76 (97%), Gaps = 1/76 (1%)
Strand = Plus / Minus
Query: 995 cagaggaggaagaagaaggtgatccggagaaggaggagggacaga-gaagatgagtcagg 1053
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 50607216 cagaggaggaagaggaaggtgatccggagaaggaggagggacagaggaagatgagtcagg 50607157
Query: 1054 acagcgttcatcacac 1069
||||||||||||||||
Sbjct: 50607156 acagcgttcatcacac 50607141
>gb|GL894194.2| Sus scrofa unplaced genomic scaffold ChrUScaf2078
Length = 226367
Score = 254 bits (128), Expect = 9e-65
Identities = 137/140 (97%)
Strand = Plus / Minus
Query: 858 agatatggggtccgacgttattcctgaggaggaggatgaaagaggagaattatatgatga 917
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 103905 agatatggggtccgacgtcattcctgaggaggaggatgaaagaggagaattatatgatga 103846
Query: 918 cgttgatcatcctctgcccgtcggcagctccccggcacgcggccagccagccgatgacga 977
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 103845 cgttgatcatcctctgcccgtcggcagctccccgccacgcggccagccagccgatgacga 103786
Query: 978 aatttatgaaaagctgccag 997
|||||||||| |||||||||
Sbjct: 103785 aatttatgaagagctgccag 103766
Score = 252 bits (127), Expect = 4e-64
Identities = 127/127 (100%)
Strand = Plus / Minus
Query: 669 agacaaacaacagaaaggtgaatttgcaatggatggctacagtgtcagaatgaataatac 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105316 agacaaacaacagaaaggtgaatttgcaatggatggctacagtgtcagaatgaataatac 105257
Query: 729 tcttaggaaggacggaaagaaagattgctgttttgagatctctgctccagataaacgtat 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105256 tcttaggaaggacggaaagaaagattgctgttttgagatctctgctccagataaacgtat 105197
Query: 789 ctatcag 795
|||||||
Sbjct: 105196 ctatcag 105190
Score = 214 bits (108), Expect = 8e-53
Identities = 108/108 (100%)
Strand = Plus / Minus
Query: 402 aggtgatgcagaagatggagaagaatatgatgacccttttgctgggcctccagacactgt 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181924 aggtgatgcagaagatggagaagaatatgatgacccttttgctgggcctccagacactgt 181865
Query: 462 ttcattagcctcagaaagatatgataaagatgatgaagcctctgatgg 509
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181864 ttcattagcctcagaaagatatgataaagatgatgaagcctctgatgg 181817
Score = 208 bits (105), Expect = 5e-51
Identities = 108/109 (99%)
Strand = Plus / Minus
Query: 33 ccgctgtggccaggacttcagcgacttccttgttgtgagccttcgcccggcagtgtccgg 92
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199596 ccgctgtggccaggacttcagcgacttccttgttgtgagccttcgcccggcagtgtccgg 199537
Query: 93 actggtaggcacgccgtccttaccgggatcgctagcccgagtctaggtc 141
||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 199536 actggtaggcacgccgtccttacagggatcgctagcccgagtctaggtc 199488
Score = 198 bits (100), Expect = 5e-48
Identities = 106/108 (98%)
Strand = Plus / Minus
Query: 270 agatgttgaaacatttgtggcagatatcctgaaaggggaaaatttatccaagaaagcaaa 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189680 agatgttgaaacatttgtggcagatatcctgaaaggggaaaatttatccaagaaagcaaa 189621
Query: 330 ggaaaagagagactcccttattaagaagctaaaagatgtgaagtctat 377
|||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 189620 ggaaaagagagattcccttattaagaagctaaaagatgtgaaatctat 189573
Score = 184 bits (93), Expect = 7e-44
Identities = 93/93 (100%)
Strand = Plus / Minus
Query: 179 cccccgcacgctccgcgctccctgacatgcccaaccccagcagcacctcctctccctacc 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199387 cccccgcacgctccgcgctccctgacatgcccaaccccagcagcacctcctctccctacc 199328
Query: 239 ccctccccgaggaaattaggaacctgttggcag 271
|||||||||||||||||||||||||||||||||
Sbjct: 199327 ccctccccgaggaaattaggaacctgttggcag 199295
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 585 agatcacagctttctgggatttgaatggcagaaacggtggtgtgctctcagtaaaacagt 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117494 agatcacagctttctgggatttgaatggcagaaacggtggtgtgctctcagtaaaacagt 117435
Query: 645 gttctattactatgggagtgataaag 670
||||||||||||||||||||||||||
Sbjct: 117434 gttctattactatgggagtgataaag 117409
Score = 157 bits (79), Expect = 2e-35
Identities = 79/79 (100%)
Strand = Plus / Minus
Query: 508 ggaaaccagtttcctccaattgcagcacaagaccttccttttgttttaaagtctggctac 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118521 ggaaaccagtttcctccaattgcagcacaagaccttccttttgttttaaagtctggctac 118462
Query: 568 cttgaaaaacgcagaaaag 586
|||||||||||||||||||
Sbjct: 118461 cttgaaaaacgcagaaaag 118443
Score = 131 bits (66), Expect = 9e-28
Identities = 66/66 (100%)
Strand = Plus / Minus
Query: 794 agttcacggcagcttctcccaaagatgccgaagaatgggtacagcagctgcaatttgtat 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104321 agttcacggcagcttctcccaaagatgccgaagaatgggtacagcagctgcaatttgtat 104262
Query: 854 tacaag 859
||||||
Sbjct: 104261 tacaag 104256
Score = 127 bits (64), Expect = 1e-26
Identities = 74/76 (97%), Gaps = 1/76 (1%)
Strand = Plus / Minus
Query: 995 cagaggaggaagaagaaggtgatccggagaaggaggagggacaga-gaagatgagtcagg 1053
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 76783 cagaggaggaagaggaaggtgatccggagaaggaggagggacagaggaagatgagtcagg 76724
Query: 1054 acagcgttcatcacac 1069
||||||||||||||||
Sbjct: 76723 acagcgttcatcacac 76708
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,086,716
Number of extensions: 596
Number of successful extensions: 596
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 593
Number of HSP's successfully gapped: 20
Length of query: 1101
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1080
Effective length of database: 2,808,413,156
Effective search space: 3033086208480
Effective search space used: 3033086208480
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)