Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014080
(1656 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536845.2| PREDICTED: similar to bromodomain adjacent to z... 324 2e-88
Alignment gi|XP_534935.2| PREDICTED: similar to Cat eye syndrome critical... 74 4e-13
Alignment gi|XP_537586.2| PREDICTED: similar to fetal Alzheimer antigen i... 70 5e-12
Alignment gi|XP_534249.2| PREDICTED: similar to p300/CBP-associated facto... 69 1e-11
Alignment gi|XP_858455.1| PREDICTED: similar to bromodomain containing 3 ... 69 1e-11
Alignment gi|XP_858417.1| PREDICTED: similar to bromodomain containing 3 ... 69 1e-11
Alignment gi|XP_858377.1| PREDICTED: similar to bromodomain containing 3 ... 69 1e-11
Alignment gi|XP_537803.2| PREDICTED: similar to bromodomain containing 3 ... 69 1e-11
Alignment gi|XP_858299.1| PREDICTED: similar to bromodomain containing 3 ... 69 1e-11
Alignment gi|XP_858260.1| PREDICTED: similar to bromodomain containing 3 ... 69 1e-11
>ref|XP_536845.2| PREDICTED: similar to bromodomain adjacent to zinc finger domain, 1B
[Canis familiaris].
Length = 1544
Score = 324 bits (830), Expect = 2e-88
Identities = 155/189 (82%), Positives = 163/189 (86%)
Frame = +1
Query: 58 LRMRPRKTVRGRQGVVXXXXXXXXXXXXXXXXXXXSRPKPPPVDDAEVDELVLQTKRSSR 237
LR+RPRKTVRG+QGV+ SRPK PPVDD EV+ELVLQTKRSSR
Sbjct: 1334 LRLRPRKTVRGKQGVIPPAARPGRRPGKKPHPARKSRPKAPPVDDMEVEELVLQTKRSSR 1393
Query: 238 RQSLELQKCEEILHKLVKYRFSWPFREPVTRDEAEDYYDVIAHPMDFQTMQNKCSCGSYR 417
RQSLELQKCE+ILHK+VKYRFSWPFREPVTRDEAEDYYD+I PMDFQTMQNKCSCGSYR
Sbjct: 1394 RQSLELQKCEDILHKIVKYRFSWPFREPVTRDEAEDYYDIITQPMDFQTMQNKCSCGSYR 1453
Query: 418 SVQEFLADMKQVFTNAELYNCRGSHVLNCTVKTEQCLVALLHKHLPGHPYVRRKRKKFPD 597
SVQEFL DMKQVFTNAELYNCRGSHVLNC VKTEQCLVALLHKHLP HPYVRRKRKKFPD
Sbjct: 1454 SVQEFLTDMKQVFTNAELYNCRGSHVLNCMVKTEQCLVALLHKHLPSHPYVRRKRKKFPD 1513
Query: 598 RLAEDEGDS 624
RLAEDEGD+
Sbjct: 1514 RLAEDEGDT 1522
>ref|XP_534935.2| PREDICTED: similar to Cat eye syndrome critical region protein 2
[Canis familiaris].
Length = 1393
Score = 73.9 bits (180), Expect = 4e-13
Identities = 35/97 (36%), Positives = 52/97 (53%)
Frame = +1
Query: 268 EILHKLVKYRFSWPFREPVTRDEAEDYYDVIAHPMDFQTMQNKCSCGSYRSVQEFLADMK 447
++L + ++ SWPF EPV A +YY +I PMD +M+ K + G Y + +EF+ DMK
Sbjct: 352 KVLDVVKAHKDSWPFLEPVDESYAPNYYQIIKVPMDISSMEKKLNGGLYCTKEEFVNDMK 411
Query: 448 QVFTNAELYNCRGSHVLNCTVKTEQCLVALLHKHLPG 558
+F N YN S + E+C + KH PG
Sbjct: 412 TMFRNCRKYNGESSEYTKMSDNLERCFHRAMMKHFPG 448
>ref|XP_537586.2| PREDICTED: similar to fetal Alzheimer antigen isoform 2 [Canis
familiaris].
Length = 2823
Score = 70.5 bits (171), Expect = 5e-12
Identities = 34/92 (36%), Positives = 47/92 (51%)
Frame = +1
Query: 265 EEILHKLVKYRFSWPFREPVTRDEAEDYYDVIAHPMDFQTMQNKCSCGSYRSVQEFLADM 444
+ +L L ++ +WPF EPV ++A DYY VI PMD TM+ + Y + EF+ADM
Sbjct: 2714 KRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADM 2773
Query: 445 KQVFTNAELYNCRGSHVLNCTVKTEQCLVALL 540
++F N YN S C E V L
Sbjct: 2774 TKIFDNCRYYNPSDSPFYQCAEVLESFFVQKL 2805
>ref|XP_534249.2| PREDICTED: similar to p300/CBP-associated factor [Canis
familiaris].
Length = 760
Score = 68.9 bits (167), Expect = 1e-11
Identities = 33/80 (41%), Positives = 48/80 (60%)
Frame = +1
Query: 265 EEILHKLVKYRFSWPFREPVTRDEAEDYYDVIAHPMDFQTMQNKCSCGSYRSVQEFLADM 444
+ IL ++ ++ +WPF EPV R EA YY+VI PMD +TM + Y S + F+AD+
Sbjct: 661 KSILQQVKSHQSAWPFMEPVKRTEAPGYYEVIRFPMDLKTMSERLKNRYYVSKKLFMADL 720
Query: 445 KQVFTNAELYNCRGSHVLNC 504
++VFTN + YN S C
Sbjct: 721 QRVFTNCKEYNPPESEYYKC 740
>ref|XP_858455.1| PREDICTED: similar to bromodomain containing 3 isoform 12 [Canis
familiaris].
Length = 729
Score = 68.9 bits (167), Expect = 1e-11
Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Frame = +1
Query: 166 RPKPPPVDDAEVDELVLQTKRSSRRQSLELQKCEEILHKLVKYR---FSWPFREPVTRD- 333
RP PP D E E V Q + S L+ C+ IL +++ + ++WPF +PV +
Sbjct: 284 RPIKPPKKDLEDGE-VPQHAGKKGKLSEHLRHCDSILKEMLSKKHAAYAWPFYKPVDAEA 342
Query: 334 -EAEDYYDVIAHPMDFQTMQNKCSCGSYRSVQEFLADMKQVFTNAELYN 477
E DY+D+I HPMD T++ K Y Q F AD++ +F+N YN
Sbjct: 343 LELHDYHDIIKHPMDLSTVKKKMDSREYPDAQGFAADIRLMFSNCYKYN 391
Score = 54.3 bits (129), Expect = 3e-07
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Frame = +1
Query: 238 RQSLELQKCEEILHK-LVKYRFSWPFREPVTRDEAE--DYYDVIAHPMDFQTMQNKCSCG 408
R++ +LQ + ++ K L K++F+WPF +PV + DY+ +I +PMD T++ +
Sbjct: 34 RKTNQLQYMQNVVVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENN 93
Query: 409 SYRSVQEFLADMKQVFTNAELYN 477
Y S E + D +FTN +YN
Sbjct: 94 YYWSASECMQDFNTMFTNCYIYN 116
>ref|XP_858417.1| PREDICTED: similar to bromodomain containing 3 isoform 11 [Canis
familiaris].
Length = 735
Score = 68.9 bits (167), Expect = 1e-11
Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Frame = +1
Query: 166 RPKPPPVDDAEVDELVLQTKRSSRRQSLELQKCEEILHKLVKYR---FSWPFREPVTRD- 333
RP PP D E E V Q + S L+ C+ IL +++ + ++WPF +PV +
Sbjct: 284 RPIKPPKKDLEDGE-VPQHAGKKGKLSEHLRHCDSILKEMLSKKHAAYAWPFYKPVDAEA 342
Query: 334 -EAEDYYDVIAHPMDFQTMQNKCSCGSYRSVQEFLADMKQVFTNAELYN 477
E DY+D+I HPMD T++ K Y Q F AD++ +F+N YN
Sbjct: 343 LELHDYHDIIKHPMDLSTVKKKMDSREYPDAQGFAADIRLMFSNCYKYN 391
Score = 54.3 bits (129), Expect = 3e-07
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Frame = +1
Query: 238 RQSLELQKCEEILHK-LVKYRFSWPFREPVTRDEAE--DYYDVIAHPMDFQTMQNKCSCG 408
R++ +LQ + ++ K L K++F+WPF +PV + DY+ +I +PMD T++ +
Sbjct: 34 RKTNQLQYMQNVVVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENN 93
Query: 409 SYRSVQEFLADMKQVFTNAELYN 477
Y S E + D +FTN +YN
Sbjct: 94 YYWSASECMQDFNTMFTNCYIYN 116
>ref|XP_858377.1| PREDICTED: similar to bromodomain containing 3 isoform 10 [Canis
familiaris].
Length = 731
Score = 68.9 bits (167), Expect = 1e-11
Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Frame = +1
Query: 166 RPKPPPVDDAEVDELVLQTKRSSRRQSLELQKCEEILHKLVKYR---FSWPFREPVTRD- 333
RP PP D E E V Q + S L+ C+ IL +++ + ++WPF +PV +
Sbjct: 271 RPIKPPKKDLEDGE-VPQHAGKKGKLSEHLRHCDSILKEMLSKKHAAYAWPFYKPVDAEA 329
Query: 334 -EAEDYYDVIAHPMDFQTMQNKCSCGSYRSVQEFLADMKQVFTNAELYN 477
E DY+D+I HPMD T++ K Y Q F AD++ +F+N YN
Sbjct: 330 LELHDYHDIIKHPMDLSTVKKKMDSREYPDAQGFAADIRLMFSNCYKYN 378
Score = 54.3 bits (129), Expect = 3e-07
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Frame = +1
Query: 238 RQSLELQKCEEILHK-LVKYRFSWPFREPVTRDEAE--DYYDVIAHPMDFQTMQNKCSCG 408
R++ +LQ + ++ K L K++F+WPF +PV + DY+ +I +PMD T++ +
Sbjct: 34 RKTNQLQYMQNVVVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENN 93
Query: 409 SYRSVQEFLADMKQVFTNAELYN 477
Y S E + D +FTN +YN
Sbjct: 94 YYWSASECMQDFNTMFTNCYIYN 116
>ref|XP_537803.2| PREDICTED: similar to bromodomain containing 3 isoform 1 [Canis
familiaris].
Length = 731
Score = 68.9 bits (167), Expect = 1e-11
Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Frame = +1
Query: 166 RPKPPPVDDAEVDELVLQTKRSSRRQSLELQKCEEILHKLVKYR---FSWPFREPVTRD- 333
RP PP D E E V Q + S L+ C+ IL +++ + ++WPF +PV +
Sbjct: 271 RPIKPPKKDLEDGE-VPQHAGKKGKLSEHLRHCDSILKEMLSKKHAAYAWPFYKPVDAEA 329
Query: 334 -EAEDYYDVIAHPMDFQTMQNKCSCGSYRSVQEFLADMKQVFTNAELYN 477
E DY+D+I HPMD T++ K Y Q F AD++ +F+N YN
Sbjct: 330 LELHDYHDIIKHPMDLSTVKKKMDSREYPDAQGFAADIRLMFSNCYKYN 378
Score = 54.3 bits (129), Expect = 3e-07
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Frame = +1
Query: 238 RQSLELQKCEEILHK-LVKYRFSWPFREPVTRDEAE--DYYDVIAHPMDFQTMQNKCSCG 408
R++ +LQ + ++ K L K++F+WPF +PV + DY+ +I +PMD T++ +
Sbjct: 34 RKTNQLQYMQNVVVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENN 93
Query: 409 SYRSVQEFLADMKQVFTNAELYN 477
Y S E + D +FTN +YN
Sbjct: 94 YYWSASECMQDFNTMFTNCYIYN 116
>ref|XP_858299.1| PREDICTED: similar to bromodomain containing 3 isoform 9 [Canis
familiaris].
Length = 734
Score = 68.9 bits (167), Expect = 1e-11
Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Frame = +1
Query: 166 RPKPPPVDDAEVDELVLQTKRSSRRQSLELQKCEEILHKLVKYR---FSWPFREPVTRD- 333
RP PP D E E V Q + S L+ C+ IL +++ + ++WPF +PV +
Sbjct: 271 RPIKPPKKDLEDGE-VPQHAGKKGKLSEHLRHCDSILKEMLSKKHAAYAWPFYKPVDAEA 329
Query: 334 -EAEDYYDVIAHPMDFQTMQNKCSCGSYRSVQEFLADMKQVFTNAELYN 477
E DY+D+I HPMD T++ K Y Q F AD++ +F+N YN
Sbjct: 330 LELHDYHDIIKHPMDLSTVKKKMDSREYPDAQGFAADIRLMFSNCYKYN 378
Score = 54.3 bits (129), Expect = 3e-07
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Frame = +1
Query: 238 RQSLELQKCEEILHK-LVKYRFSWPFREPVTRDEAE--DYYDVIAHPMDFQTMQNKCSCG 408
R++ +LQ + ++ K L K++F+WPF +PV + DY+ +I +PMD T++ +
Sbjct: 34 RKTNQLQYMQNVVVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENN 93
Query: 409 SYRSVQEFLADMKQVFTNAELYN 477
Y S E + D +FTN +YN
Sbjct: 94 YYWSASECMQDFNTMFTNCYIYN 116
>ref|XP_858260.1| PREDICTED: similar to bromodomain containing 3 isoform 8 [Canis
familiaris].
Length = 738
Score = 68.9 bits (167), Expect = 1e-11
Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Frame = +1
Query: 166 RPKPPPVDDAEVDELVLQTKRSSRRQSLELQKCEEILHKLVKYR---FSWPFREPVTRD- 333
RP PP D E E V Q + S L+ C+ IL +++ + ++WPF +PV +
Sbjct: 289 RPIKPPKKDLEDGE-VPQHAGKKGKLSEHLRHCDSILKEMLSKKHAAYAWPFYKPVDAEA 347
Query: 334 -EAEDYYDVIAHPMDFQTMQNKCSCGSYRSVQEFLADMKQVFTNAELYN 477
E DY+D+I HPMD T++ K Y Q F AD++ +F+N YN
Sbjct: 348 LELHDYHDIIKHPMDLSTVKKKMDSREYPDAQGFAADIRLMFSNCYKYN 396
Score = 54.3 bits (129), Expect = 3e-07
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Frame = +1
Query: 238 RQSLELQKCEEILHK-LVKYRFSWPFREPVTRDEAE--DYYDVIAHPMDFQTMQNKCSCG 408
R++ +LQ + ++ K L K++F+WPF +PV + DY+ +I +PMD T++ +
Sbjct: 34 RKTNQLQYMQNVVVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENN 93
Query: 409 SYRSVQEFLADMKQVFTNAELYN 477
Y S E + D +FTN +YN
Sbjct: 94 YYWSASECMQDFNTMFTNCYIYN 116
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 62,759,572
Number of extensions: 1660140
Number of successful extensions: 7724
Number of sequences better than 1.0e-05: 88
Number of HSP's gapped: 7624
Number of HSP's successfully gapped: 118
Length of query: 552
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 444
Effective length of database: 15,274,216
Effective search space: 6781751904
Effective search space used: 6781751904
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-014080
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014080
(1656 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001179112.1| tyrosine-protein kinase BAZ1B [Bos taurus]. 336 3e-92
Alignment gi|XP_002698234.1| PREDICTED: bromodomain adjacent to zinc fing... 336 3e-92
Alignment gi|XP_001788089.1| PREDICTED: cat eye syndrome chromosome regio... 77 6e-14
Alignment gi|XP_002696170.1| PREDICTED: Nucleosome-remodeling factor subu... 70 4e-12
Alignment gi|XP_001249746.2| PREDICTED: bromodomain PHD finger transcript... 70 4e-12
Alignment gi|NP_001070341.1| bromodomain-containing protein 3 [Bos taurus]. 70 6e-12
Alignment gi|XP_002684762.1| PREDICTED: K(lysine) acetyltransferase 2B [B... 69 9e-12
Alignment gi|XP_613744.3| PREDICTED: K(lysine) acetyltransferase 2B [Bos ... 69 9e-12
Alignment gi|NP_001039331.1| bromodomain-containing protein 2 [Bos taurus]. 68 2e-11
Alignment gi|XP_002688607.1| PREDICTED: bromodomain containing 4 [Bos tau... 66 1e-10
>ref|NP_001179112.1| tyrosine-protein kinase BAZ1B [Bos taurus].
Length = 1482
Score = 336 bits (862), Expect = 3e-92
Identities = 160/194 (82%), Positives = 169/194 (87%)
Frame = +1
Query: 58 LRMRPRKTVRGRQGVVXXXXXXXXXXXXXXXXXXXSRPKPPPVDDAEVDELVLQTKRSSR 237
LR+RPRKTVRG+QGV+ +RPK PP DD EVDELVLQTKRSSR
Sbjct: 1279 LRLRPRKTVRGKQGVIPPTARPGRRPGKKPHPARRARPKAPPADDMEVDELVLQTKRSSR 1338
Query: 238 RQSLELQKCEEILHKLVKYRFSWPFREPVTRDEAEDYYDVIAHPMDFQTMQNKCSCGSYR 417
RQSLELQKCEEILHK+VKYRFSWPFREPVTRDEAEDYYD+I HPMDFQTMQ+KCSCG YR
Sbjct: 1339 RQSLELQKCEEILHKIVKYRFSWPFREPVTRDEAEDYYDIITHPMDFQTMQSKCSCGGYR 1398
Query: 418 SVQEFLADMKQVFTNAELYNCRGSHVLNCTVKTEQCLVALLHKHLPGHPYVRRKRKKFPD 597
SVQEFLAD+KQVFTNAELYNCRGSHVL+C VKTEQCLVALLHKHLPGHPYVRRKRKKFPD
Sbjct: 1399 SVQEFLADLKQVFTNAELYNCRGSHVLSCMVKTEQCLVALLHKHLPGHPYVRRKRKKFPD 1458
Query: 598 RLAEDEGDSEPEPV 639
RLAEDEGDSEPEPV
Sbjct: 1459 RLAEDEGDSEPEPV 1472
>ref|XP_002698234.1| PREDICTED: bromodomain adjacent to zinc finger domain, 1B [Bos
taurus].
Length = 1482
Score = 336 bits (862), Expect = 3e-92
Identities = 160/194 (82%), Positives = 169/194 (87%)
Frame = +1
Query: 58 LRMRPRKTVRGRQGVVXXXXXXXXXXXXXXXXXXXSRPKPPPVDDAEVDELVLQTKRSSR 237
LR+RPRKTVRG+QGV+ +RPK PP DD EVDELVLQTKRSSR
Sbjct: 1279 LRLRPRKTVRGKQGVIPPTARPGRRPGKKPHPARRARPKAPPADDMEVDELVLQTKRSSR 1338
Query: 238 RQSLELQKCEEILHKLVKYRFSWPFREPVTRDEAEDYYDVIAHPMDFQTMQNKCSCGSYR 417
RQSLELQKCEEILHK+VKYRFSWPFREPVTRDEAEDYYD+I HPMDFQTMQ+KCSCG YR
Sbjct: 1339 RQSLELQKCEEILHKIVKYRFSWPFREPVTRDEAEDYYDIITHPMDFQTMQSKCSCGGYR 1398
Query: 418 SVQEFLADMKQVFTNAELYNCRGSHVLNCTVKTEQCLVALLHKHLPGHPYVRRKRKKFPD 597
SVQEFLAD+KQVFTNAELYNCRGSHVL+C VKTEQCLVALLHKHLPGHPYVRRKRKKFPD
Sbjct: 1399 SVQEFLADLKQVFTNAELYNCRGSHVLSCMVKTEQCLVALLHKHLPGHPYVRRKRKKFPD 1458
Query: 598 RLAEDEGDSEPEPV 639
RLAEDEGDSEPEPV
Sbjct: 1459 RLAEDEGDSEPEPV 1472
>ref|XP_001788089.1| PREDICTED: cat eye syndrome chromosome region, candidate 2 homolog
[Bos taurus].
Length = 1573
Score = 76.6 bits (187), Expect = 6e-14
Identities = 38/114 (33%), Positives = 60/114 (52%), Gaps = 7/114 (6%)
Frame = +1
Query: 268 EILHKLVKYRFSWPFREPVTRDEAEDYYDVIAHPMDFQTMQNKCSCGSYRSVQEFLADMK 447
++L + ++ SWPF EPV A +YY +I PMD +M+ K + GSY + +EF+ DMK
Sbjct: 465 KVLDVVKAHKDSWPFLEPVDESYAPNYYQIIKVPMDISSMEKKLNGGSYCTKEEFVNDMK 524
Query: 448 QVFTNAELYNCRGSHVLNCTVKTEQCLVALLHKHLPG-------HPYVRRKRKK 588
+F N YN S + E+C + KH PG P++R + ++
Sbjct: 525 TMFRNCRKYNGESSEYTKMSDNLERCFHRAMLKHFPGEDGDTDEEPWMREEERR 578
>ref|XP_002696170.1| PREDICTED: Nucleosome-remodeling factor subunit BPTF-like [Bos
taurus].
Length = 2906
Score = 70.5 bits (171), Expect = 4e-12
Identities = 34/92 (36%), Positives = 47/92 (51%)
Frame = +1
Query: 265 EEILHKLVKYRFSWPFREPVTRDEAEDYYDVIAHPMDFQTMQNKCSCGSYRSVQEFLADM 444
+ +L L ++ +WPF EPV ++A DYY VI PMD TM+ + Y + EF+ADM
Sbjct: 2797 KRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADM 2856
Query: 445 KQVFTNAELYNCRGSHVLNCTVKTEQCLVALL 540
++F N YN S C E V L
Sbjct: 2857 TKIFDNCRYYNPSDSPFYQCAEVLESFFVQKL 2888
>ref|XP_001249746.2| PREDICTED: bromodomain PHD finger transcription factor isoform 1 [Bos
taurus].
Length = 2860
Score = 70.5 bits (171), Expect = 4e-12
Identities = 34/92 (36%), Positives = 47/92 (51%)
Frame = +1
Query: 265 EEILHKLVKYRFSWPFREPVTRDEAEDYYDVIAHPMDFQTMQNKCSCGSYRSVQEFLADM 444
+ +L L ++ +WPF EPV ++A DYY VI PMD TM+ + Y + EF+ADM
Sbjct: 2751 KRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADM 2810
Query: 445 KQVFTNAELYNCRGSHVLNCTVKTEQCLVALL 540
++F N YN S C E V L
Sbjct: 2811 TKIFDNCRYYNPSDSPFYQCAEVLESFFVQKL 2842
>ref|NP_001070341.1| bromodomain-containing protein 3 [Bos taurus].
Length = 722
Score = 70.1 bits (170), Expect = 6e-12
Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Frame = +1
Query: 166 RPKPPPVDDAEVDELVLQTKRSSRRQSLELQKCEEILHKLVKYR---FSWPFREPVTRD- 333
RP PP D E E V Q R S L+ C+ IL +++ + ++WPF +PV +
Sbjct: 284 RPIKPPKKDLEDGE-VPQHAGKKGRLSEHLRHCDSILKEMLSKKHAAYAWPFYKPVDAEA 342
Query: 334 -EAEDYYDVIAHPMDFQTMQNKCSCGSYRSVQEFLADMKQVFTNAELYN 477
E DY+D+I HPMD T++ K Y Q F AD++ +F+N YN
Sbjct: 343 LELHDYHDIIKHPMDLSTVKKKMDSREYPDAQGFAADIRLMFSNCYKYN 391
Score = 54.3 bits (129), Expect = 3e-07
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Frame = +1
Query: 238 RQSLELQKCEEILHK-LVKYRFSWPFREPVTRDEAE--DYYDVIAHPMDFQTMQNKCSCG 408
R++ +LQ + ++ K L K++F+WPF +PV + DY+ +I +PMD T++ +
Sbjct: 34 RKTNQLQYMQNVVVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENN 93
Query: 409 SYRSVQEFLADMKQVFTNAELYN 477
Y S E + D +FTN +YN
Sbjct: 94 YYWSASECMQDFNTMFTNCYIYN 116
>ref|XP_002684762.1| PREDICTED: K(lysine) acetyltransferase 2B [Bos taurus].
Length = 826
Score = 69.3 bits (168), Expect = 9e-12
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 7/101 (6%)
Frame = +1
Query: 223 KRSSRRQSLELQKCEE-------ILHKLVKYRFSWPFREPVTRDEAEDYYDVIAHPMDFQ 381
K S R +S E + ++ IL ++ ++ +WPF EPV R EA YY+VI PMD +
Sbjct: 706 KPSGRERSKEARDPDQLYSTLRSILQQVKSHQSAWPFMEPVKRTEAPGYYEVIRFPMDLK 765
Query: 382 TMQNKCSCGSYRSVQEFLADMKQVFTNAELYNCRGSHVLNC 504
TM + Y S + F+AD+++VFTN + YN S C
Sbjct: 766 TMSERLKNRYYVSKKLFMADLQRVFTNCKEYNPPESEYYKC 806
>ref|XP_613744.3| PREDICTED: K(lysine) acetyltransferase 2B [Bos taurus].
Length = 826
Score = 69.3 bits (168), Expect = 9e-12
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 7/101 (6%)
Frame = +1
Query: 223 KRSSRRQSLELQKCEE-------ILHKLVKYRFSWPFREPVTRDEAEDYYDVIAHPMDFQ 381
K S R +S E + ++ IL ++ ++ +WPF EPV R EA YY+VI PMD +
Sbjct: 706 KPSGRERSKEARDPDQLYSTLRSILQQVKSHQSAWPFMEPVKRTEAPGYYEVIRFPMDLK 765
Query: 382 TMQNKCSCGSYRSVQEFLADMKQVFTNAELYNCRGSHVLNC 504
TM + Y S + F+AD+++VFTN + YN S C
Sbjct: 766 TMSERLKNRYYVSKKLFMADLQRVFTNCKEYNPPESEYYKC 806
>ref|NP_001039331.1| bromodomain-containing protein 2 [Bos taurus].
Length = 803
Score = 68.2 bits (165), Expect = 2e-11
Identities = 40/111 (36%), Positives = 60/111 (54%), Gaps = 7/111 (6%)
Frame = +1
Query: 166 RPKPPPVDDAEVDELVLQTKRSSRRQSL--ELQKCEEILHKLVKYR---FSWPFREPVTR 330
RP PP D + Q +SS++ L +L+ C IL +L+ + ++WPF +PV
Sbjct: 322 RPIKPPRKDLPDSQ---QQHQSSKKGKLSEQLKHCNGILKELLSKKHAAYAWPFYKPVDA 378
Query: 331 DEA--EDYYDVIAHPMDFQTMQNKCSCGSYRSVQEFLADMKQVFTNAELYN 477
DY+D+I HPMD T++ K YR QEF AD++ +F+N YN
Sbjct: 379 SALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYN 429
Score = 54.7 bits (130), Expect = 2e-07
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
Frame = +1
Query: 163 SRPKPPPVDDAEVDELVLQTKRSSRRQSLELQKCEEILHK-LVKYRFSWPFREPVTRDEA 339
+ P PP V + + R + +LQ +++ K L K++F+WPFR+PV +
Sbjct: 59 ANPPPPEVSNP----------KKPGRVTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKL 108
Query: 340 --EDYYDVIAHPMDFQTMQNKCSCGSYRSVQEFLADMKQVFTNAELYN 477
DY+ +I PMD T++ + Y + E + D +FTN +YN
Sbjct: 109 GLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYN 156
>ref|XP_002688607.1| PREDICTED: bromodomain containing 4 [Bos taurus].
Length = 1368
Score = 65.9 bits (159), Expect = 1e-10
Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 5/110 (4%)
Frame = +1
Query: 163 SRPKPPPVDDAEVDELVLQTKRSSRRQSLELQKCEEILHKLVKYR---FSWPFREPVTRD 333
SRP PP D + +SS+ S +L+ C IL ++ + ++WPF +PV +
Sbjct: 325 SRPVKPPKKDVPDSQQHPAPDKSSK-VSEQLKCCNGILKEMFAKKHAAYAWPFYKPVDVE 383
Query: 334 EA--EDYYDVIAHPMDFQTMQNKCSCGSYRSVQEFLADMKQVFTNAELYN 477
DY D+I HPMD T+++K YR QEF AD++ +F+N YN
Sbjct: 384 ALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYN 433
Score = 60.1 bits (144), Expect = 6e-09
Identities = 34/111 (30%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Frame = +1
Query: 175 PPPVDDAEVDELVLQTKRSSRRQSLELQKCEEILHK-LVKYRFSWPFREPV--TRDEAED 345
PPP + + ++ +RQ+ +LQ +++ K L K++F+WPF++PV + D
Sbjct: 45 PPPPETSNPNK--------PKRQTNQLQYLLKVVLKTLWKHQFAWPFQQPVDAVKLNLPD 96
Query: 346 YYDVIAHPMDFQTMQNKCSCGSYRSVQEFLADMKQVFTNAELYNCRGSHVL 498
YY +I PMD T++ + Y + QE + D +FTN +YN G ++
Sbjct: 97 YYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIV 147
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 60,272,865
Number of extensions: 1630389
Number of successful extensions: 7336
Number of sequences better than 1.0e-05: 37
Number of HSP's gapped: 7272
Number of HSP's successfully gapped: 41
Length of query: 552
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 445
Effective length of database: 14,140,958
Effective search space: 6292726310
Effective search space used: 6292726310
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014080
(1656 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003354545.1| PREDICTED: tyrosine-protein kinase BAZ1B [Su... 357 1e-98
Alignment gi|XP_003122318.2| PREDICTED: bromodomain-containing protein 3-... 70 3e-12
Alignment gi|XP_003358378.1| PREDICTED: histone acetyltransferase KAT2B [... 69 8e-12
Alignment gi|NP_001116557.1| bromodomain-containing protein 2 [Sus scrofa]. 68 1e-11
Alignment gi|NP_001191701.1| bromodomain-containing protein 4 [Sus scrofa]. 66 7e-11
Alignment gi|XP_003354165.1| PREDICTED: bromodomain-containing protein 4-... 66 7e-11
Alignment gi|XP_001927787.3| PREDICTED: LOW QUALITY PROTEIN: bromodomain ... 64 2e-10
Alignment gi|XP_003353350.1| PREDICTED: PH-interacting protein, partial [... 63 6e-10
Alignment gi|XP_003131453.2| PREDICTED: histone acetyltransferase KAT2A i... 62 1e-09
Alignment gi|XP_003128566.1| PREDICTED: LOW QUALITY PROTEIN: bromodomain ... 59 6e-09
>ref|XP_003354545.1| PREDICTED: tyrosine-protein kinase BAZ1B [Sus scrofa].
Length = 1542
Score = 357 bits (916), Expect = 1e-98
Identities = 174/194 (89%), Positives = 175/194 (90%)
Frame = +1
Query: 58 LRMRPRKTVRGRQGVVXXXXXXXXXXXXXXXXXXXSRPKPPPVDDAEVDELVLQTKRSSR 237
LR+RPRKTVRGRQGVV SRPKPPPVDDAEVDELVLQTKRSSR
Sbjct: 1339 LRLRPRKTVRGRQGVVPPAARPGRRPGKKPLPTRRSRPKPPPVDDAEVDELVLQTKRSSR 1398
Query: 238 RQSLELQKCEEILHKLVKYRFSWPFREPVTRDEAEDYYDVIAHPMDFQTMQNKCSCGSYR 417
RQSLELQKCEEILHKLVKYRFSWPFREPVTRDEAEDYYDVIAHPMDFQTMQNKCSCGSYR
Sbjct: 1399 RQSLELQKCEEILHKLVKYRFSWPFREPVTRDEAEDYYDVIAHPMDFQTMQNKCSCGSYR 1458
Query: 418 SVQEFLADMKQVFTNAELYNCRGSHVLNCTVKTEQCLVALLHKHLPGHPYVRRKRKKFPD 597
SVQEFLADMKQVFTNAELYNCRGSHVLNCTVKTEQCLVALLHKHLPGHPYVRRKRKKFPD
Sbjct: 1459 SVQEFLADMKQVFTNAELYNCRGSHVLNCTVKTEQCLVALLHKHLPGHPYVRRKRKKFPD 1518
Query: 598 RLAEDEGDSEPEPV 639
RLAEDEGDSEPEPV
Sbjct: 1519 RLAEDEGDSEPEPV 1532
>ref|XP_003122318.2| PREDICTED: bromodomain-containing protein 3-like [Sus scrofa].
Length = 726
Score = 70.5 bits (171), Expect = 3e-12
Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Frame = +1
Query: 166 RPKPPPVDDAEVDELVLQTKRSSRRQSLELQKCEEILHKLVKYR---FSWPFREPVTRD- 333
RP PP D E E V Q R S L+ C+ IL +++ + ++WPF +PV +
Sbjct: 284 RPIKPPKKDLEDGE-VPQHAGKKGRLSEHLRHCDSILREMLSKKHAAYAWPFYKPVDAEA 342
Query: 334 -EAEDYYDVIAHPMDFQTMQNKCSCGSYRSVQEFLADMKQVFTNAELYN 477
E DY+D+I HPMD T++ K Y Q F AD++ +F+N YN
Sbjct: 343 LELHDYHDIIKHPMDLSTVKKKMDSREYPDAQGFAADIRLMFSNCYKYN 391
Score = 54.3 bits (129), Expect = 2e-07
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Frame = +1
Query: 238 RQSLELQKCEEILHK-LVKYRFSWPFREPVTRDEAE--DYYDVIAHPMDFQTMQNKCSCG 408
R++ +LQ + ++ K L K++F+WPF +PV + DY+ +I +PMD T++ +
Sbjct: 34 RKTNQLQYMQNVVVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENN 93
Query: 409 SYRSVQEFLADMKQVFTNAELYN 477
Y S E + D +FTN +YN
Sbjct: 94 YYWSASECMQDFNTMFTNCYIYN 116
>ref|XP_003358378.1| PREDICTED: histone acetyltransferase KAT2B [Sus scrofa].
Length = 753
Score = 68.9 bits (167), Expect = 8e-12
Identities = 33/80 (41%), Positives = 48/80 (60%)
Frame = +1
Query: 265 EEILHKLVKYRFSWPFREPVTRDEAEDYYDVIAHPMDFQTMQNKCSCGSYRSVQEFLADM 444
+ IL ++ ++ +WPF EPV R EA YY+VI PMD +TM + Y S + F+AD+
Sbjct: 654 KSILQQVKSHQSAWPFMEPVKRTEAPGYYEVIRFPMDLKTMSERLKNRYYVSKKLFMADL 713
Query: 445 KQVFTNAELYNCRGSHVLNC 504
++VFTN + YN S C
Sbjct: 714 QRVFTNCKEYNPPESEYYKC 733
>ref|NP_001116557.1| bromodomain-containing protein 2 [Sus scrofa].
Length = 803
Score = 68.2 bits (165), Expect = 1e-11
Identities = 40/111 (36%), Positives = 60/111 (54%), Gaps = 7/111 (6%)
Frame = +1
Query: 166 RPKPPPVDDAEVDELVLQTKRSSRRQSL--ELQKCEEILHKLVKYR---FSWPFREPVTR 330
RP PP D + Q +SS++ L +L+ C IL +L+ + ++WPF +PV
Sbjct: 322 RPIKPPRKDLPDSQ---QQHQSSKKGKLSEQLKHCNGILKELLSKKHAAYAWPFYKPVDA 378
Query: 331 DEA--EDYYDVIAHPMDFQTMQNKCSCGSYRSVQEFLADMKQVFTNAELYN 477
DY+D+I HPMD T++ K YR QEF AD++ +F+N YN
Sbjct: 379 SALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYN 429
Score = 54.7 bits (130), Expect = 2e-07
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
Frame = +1
Query: 163 SRPKPPPVDDAEVDELVLQTKRSSRRQSLELQKCEEILHK-LVKYRFSWPFREPVTRDEA 339
+ P PP V + + R + +LQ +++ K L K++F+WPFR+PV +
Sbjct: 59 ANPPPPEVSNP----------KKPGRVTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKL 108
Query: 340 --EDYYDVIAHPMDFQTMQNKCSCGSYRSVQEFLADMKQVFTNAELYN 477
DY+ +I PMD T++ + Y + E + D +FTN +YN
Sbjct: 109 GLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYN 156
>ref|NP_001191701.1| bromodomain-containing protein 4 [Sus scrofa].
Length = 1368
Score = 65.9 bits (159), Expect = 7e-11
Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 5/110 (4%)
Frame = +1
Query: 163 SRPKPPPVDDAEVDELVLQTKRSSRRQSLELQKCEEILHKLVKYR---FSWPFREPVTRD 333
SRP PP D + +SS+ S +L+ C IL ++ + ++WPF +PV +
Sbjct: 325 SRPVKPPKKDVPDSQQHPAPDKSSK-VSEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVE 383
Query: 334 EA--EDYYDVIAHPMDFQTMQNKCSCGSYRSVQEFLADMKQVFTNAELYN 477
DY D+I HPMD T+++K YR QEF AD++ +F+N YN
Sbjct: 384 ALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYN 433
Score = 60.1 bits (144), Expect = 4e-09
Identities = 34/111 (30%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Frame = +1
Query: 175 PPPVDDAEVDELVLQTKRSSRRQSLELQKCEEILHK-LVKYRFSWPFREPV--TRDEAED 345
PPP + + ++ +RQ+ +LQ +++ K L K++F+WPF++PV + D
Sbjct: 45 PPPPETSNPNK--------PKRQTNQLQYLLKVVLKTLWKHQFAWPFQQPVDAVKLNLPD 96
Query: 346 YYDVIAHPMDFQTMQNKCSCGSYRSVQEFLADMKQVFTNAELYNCRGSHVL 498
YY +I PMD T++ + Y + QE + D +FTN +YN G ++
Sbjct: 97 YYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIV 147
>ref|XP_003354165.1| PREDICTED: bromodomain-containing protein 4-like [Sus scrofa].
Length = 618
Score = 65.9 bits (159), Expect = 7e-11
Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 5/110 (4%)
Frame = +1
Query: 163 SRPKPPPVDDAEVDELVLQTKRSSRRQSLELQKCEEILHKLVKYR---FSWPFREPVTRD 333
SRP PP D + +SS+ S +L+ C IL ++ + ++WPF +PV +
Sbjct: 221 SRPVKPPKKDVPDSQQHPAPDKSSK-VSEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVE 279
Query: 334 EA--EDYYDVIAHPMDFQTMQNKCSCGSYRSVQEFLADMKQVFTNAELYN 477
DY D+I HPMD T+++K YR QEF AD++ +F+N YN
Sbjct: 280 ALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYN 329
>ref|XP_001927787.3| PREDICTED: LOW QUALITY PROTEIN: bromodomain adjacent to zinc finger
domain protein 2A [Sus scrofa].
Length = 1937
Score = 63.9 bits (154), Expect = 2e-10
Identities = 40/114 (35%), Positives = 55/114 (48%), Gaps = 3/114 (2%)
Frame = +1
Query: 163 SRPKPPPVDDAEVDELVLQTKR---SSRRQSLELQKCEEILHKLVKYRFSWPFREPVTRD 333
SR + P +E + KR S R +L CE IL ++ + +WPF EPV
Sbjct: 1798 SRGRESPAVPRYSEEGLSPAKRRRLSMRNHHSDLTFCEIILMEMESHDAAWPFLEPVNPR 1857
Query: 334 EAEDYYDVIAHPMDFQTMQNKCSCGSYRSVQEFLADMKQVFTNAELYNCRGSHV 495
Y +I +PMDF TM+ + G Y S +EF AD VF N + +N S V
Sbjct: 1858 LVSGYRRIIKNPMDFSTMRERLLRGGYTSSEEFAADALLVFDNCQTFNEDDSEV 1911
>ref|XP_003353350.1| PREDICTED: PH-interacting protein, partial [Sus scrofa].
Length = 652
Score = 62.8 bits (151), Expect = 6e-10
Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
Frame = +1
Query: 232 SRRQSLELQ----KCEEILHKLVKYRFSWPFREPVTRDEAEDYYDVIAHPMDFQTMQNKC 399
+R QS ++Q +C+E+L+ + + S PFR+PV E DY D+I PMDF T++
Sbjct: 142 NRAQSYDIQAWKKQCQELLNLIFQCEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETL 201
Query: 400 SCGSYRSVQEFLADMKQVFTNAELY 474
G+Y S E D++ +F+N++ Y
Sbjct: 202 EAGNYESPMELCKDVRLIFSNSKAY 226
>ref|XP_003131453.2| PREDICTED: histone acetyltransferase KAT2A isoform 1 [Sus scrofa].
Length = 837
Score = 61.6 bits (148), Expect = 1e-09
Identities = 29/86 (33%), Positives = 47/86 (54%)
Frame = +1
Query: 265 EEILHKLVKYRFSWPFREPVTRDEAEDYYDVIAHPMDFQTMQNKCSCGSYRSVQEFLADM 444
+ +L ++ + +WPF EPV + EA DYY+VI P+D +TM + Y + + F+AD+
Sbjct: 738 KNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADL 797
Query: 445 KQVFTNAELYNCRGSHVLNCTVKTEQ 522
++V N YN S C E+
Sbjct: 798 QRVIANCREYNPPDSEYCRCASALEK 823
>ref|XP_003128566.1| PREDICTED: LOW QUALITY PROTEIN: bromodomain adjacent to zinc finger
domain protein 1A [Sus scrofa].
Length = 1675
Score = 59.3 bits (142), Expect = 6e-09
Identities = 31/91 (34%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
Frame = +1
Query: 223 KRSSRRQS--LELQKCEEILHKLVKYRFSWPFREPVTRDEAEDYYDVIAHPMDFQTMQNK 396
+RSS RQ EL E+++ +LV++ SWPF + V++ + DYYD+I P+ ++ K
Sbjct: 1542 RRSSGRQGGVHELSAFEQLVVELVRHDDSWPFLKLVSKIQVPDYYDIIKKPIALNIIREK 1601
Query: 397 CSCGSYRSVQEFLADMKQVFTNAELYNCRGS 489
+ Y+ EF+ D++ +F+N YN R +
Sbjct: 1602 VNKCEYKLASEFIDDIELMFSNCFEYNPRNT 1632
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 39,080,281
Number of extensions: 1081419
Number of successful extensions: 4798
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 4761
Number of HSP's successfully gapped: 20
Length of query: 552
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 448
Effective length of database: 8,754,644
Effective search space: 3922080512
Effective search space used: 3922080512
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014080
(1656 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035844.2| tyrosine-protein kinase BAZ1B [Mus musculus]. 298 8e-81
Alignment gi|NP_001121623.1| cat eye syndrome chromosome region, candidat... 74 4e-13
Alignment gi|NP_789820.2| bromodomain PHD finger transcription factor [Mu... 72 2e-12
Alignment gi|XP_003085493.1| PREDICTED: histone acetyltransferase KAT2B-l... 70 5e-12
Alignment gi|XP_003086499.1| PREDICTED: histone acetyltransferase KAT2B-l... 70 5e-12
Alignment gi|NP_001107046.1| bromodomain-containing protein 3 isoform 1 [... 69 8e-12
Alignment gi|NP_075825.3| bromodomain-containing protein 3 isoform 2 [Mus... 69 8e-12
Alignment gi|NP_001107045.1| bromodomain-containing protein 3 isoform 2 [... 69 8e-12
Alignment gi|NP_001191902.1| bromodomain-containing protein 2 [Mus muscul... 68 2e-11
Alignment gi|NP_034368.2| bromodomain-containing protein 2 [Mus musculus]. 68 2e-11
>ref|NP_035844.2| tyrosine-protein kinase BAZ1B [Mus musculus].
Length = 1479
Score = 298 bits (763), Expect = 8e-81
Identities = 147/194 (75%), Positives = 160/194 (82%)
Frame = +1
Query: 58 LRMRPRKTVRGRQGVVXXXXXXXXXXXXXXXXXXXSRPKPPPVDDAEVDELVLQTKRSSR 237
LR+RPRKT+RG+Q V+ SRPK DD EVD+LVLQTKR SR
Sbjct: 1281 LRLRPRKTIRGKQSVIPAARPGRPPGKKSHPARR-SRPK----DDPEVDDLVLQTKRISR 1335
Query: 238 RQSLELQKCEEILHKLVKYRFSWPFREPVTRDEAEDYYDVIAHPMDFQTMQNKCSCGSYR 417
RQSLELQKCE+ILHKLVKYRFSWPFREPVTRDEAEDYYDVI HPMDFQT+QNKCSCG+YR
Sbjct: 1336 RQSLELQKCEDILHKLVKYRFSWPFREPVTRDEAEDYYDVIEHPMDFQTIQNKCSCGNYR 1395
Query: 418 SVQEFLADMKQVFTNAELYNCRGSHVLNCTVKTEQCLVALLHKHLPGHPYVRRKRKKFPD 597
SVQEFL DMKQVF NAELYNCRGSHVL+C KTEQCL+ALL KHLPGHPYVRRKR+KFPD
Sbjct: 1396 SVQEFLTDMKQVFANAELYNCRGSHVLSCMEKTEQCLLALLQKHLPGHPYVRRKRRKFPD 1455
Query: 598 RLAEDEGDSEPEPV 639
RLA+DEGDS+ E V
Sbjct: 1456 RLADDEGDSDSESV 1469
>ref|NP_001121623.1| cat eye syndrome chromosome region, candidate 2 homolog [Mus
musculus].
Length = 1425
Score = 73.6 bits (179), Expect = 4e-13
Identities = 39/130 (30%), Positives = 65/130 (50%), Gaps = 2/130 (1%)
Frame = +1
Query: 175 PPPVDDAEVDELVLQTKRSSRRQSLE--LQKCEEILHKLVKYRFSWPFREPVTRDEAEDY 348
PP + +++ + + K++ L+ ++L + ++ SWPF EPV A +Y
Sbjct: 392 PPELSHLDLNSPMREGKKTKDLFELDDDFTAMYKVLDVVKAHKDSWPFLEPVDESYAPNY 451
Query: 349 YDVIAHPMDFQTMQNKCSCGSYRSVQEFLADMKQVFTNAELYNCRGSHVLNCTVKTEQCL 528
Y +I PMD +M+ K + G Y + +EF+ DMK +F N YN S + E+C
Sbjct: 452 YQIIKIPMDISSMEKKLNGGLYCNKEEFVNDMKTMFRNCRKYNGDSSEYTKMSDNLERCF 511
Query: 529 VALLHKHLPG 558
+ KH PG
Sbjct: 512 HRAMTKHFPG 521
>ref|NP_789820.2| bromodomain PHD finger transcription factor [Mus musculus].
Length = 2921
Score = 71.6 bits (174), Expect = 2e-12
Identities = 34/92 (36%), Positives = 48/92 (52%)
Frame = +1
Query: 265 EEILHKLVKYRFSWPFREPVTRDEAEDYYDVIAHPMDFQTMQNKCSCGSYRSVQEFLADM 444
+ +L L ++ +WPF EPV ++A DYY VI PMD TM+ + Y + EF+ADM
Sbjct: 2812 KRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERIQKRYYEKLTEFVADM 2871
Query: 445 KQVFTNAELYNCRGSHVLNCTVKTEQCLVALL 540
++F N YN R + C E V L
Sbjct: 2872 TKIFDNCRYYNPRDTPFYQCAEVLESFFVQKL 2903
>ref|XP_003085493.1| PREDICTED: histone acetyltransferase KAT2B-like [Mus musculus].
Length = 813
Score = 70.1 bits (170), Expect = 5e-12
Identities = 34/80 (42%), Positives = 49/80 (61%)
Frame = +1
Query: 265 EEILHKLVKYRFSWPFREPVTRDEAEDYYDVIAHPMDFQTMQNKCSCGSYRSVQEFLADM 444
+ IL ++ ++ +WPF EPV R EA YY+VI PMD +TM + Y S + F+AD+
Sbjct: 714 KNILQQVKSHQSAWPFLEPVKRTEAPGYYEVIRFPMDLKTMSERLRNRYYVSKKLFMADL 773
Query: 445 KQVFTNAELYNCRGSHVLNC 504
++VFTN + YN S V C
Sbjct: 774 QRVFTNCKEYNPPESEVYKC 793
>ref|XP_003086499.1| PREDICTED: histone acetyltransferase KAT2B-like [Mus musculus].
Length = 813
Score = 70.1 bits (170), Expect = 5e-12
Identities = 34/80 (42%), Positives = 49/80 (61%)
Frame = +1
Query: 265 EEILHKLVKYRFSWPFREPVTRDEAEDYYDVIAHPMDFQTMQNKCSCGSYRSVQEFLADM 444
+ IL ++ ++ +WPF EPV R EA YY+VI PMD +TM + Y S + F+AD+
Sbjct: 714 KNILQQVKSHQSAWPFLEPVKRTEAPGYYEVIRFPMDLKTMSERLRNRYYVSKKLFMADL 773
Query: 445 KQVFTNAELYNCRGSHVLNC 504
++VFTN + YN S V C
Sbjct: 774 QRVFTNCKEYNPPESEVYKC 793
>ref|NP_001107046.1| bromodomain-containing protein 3 isoform 1 [Mus musculus].
Length = 743
Score = 69.3 bits (168), Expect = 8e-12
Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Frame = +1
Query: 166 RPKPPPVDDAEVDELVLQTKRSSRRQSLELQKCEEILHKLVKYR---FSWPFREPVTRD- 333
RP PP D E E V Q + S L+ C+ IL +++ + ++WPF +PV +
Sbjct: 283 RPIKPPKKDLEDGE-VPQHAGKKGKLSEHLRHCDSILREMLSKKHAAYAWPFYKPVDAEA 341
Query: 334 -EAEDYYDVIAHPMDFQTMQNKCSCGSYRSVQEFLADMKQVFTNAELYN 477
E DY+D+I HPMD T++ K Y Q F AD++ +F+N YN
Sbjct: 342 LELHDYHDIIKHPMDLSTVKRKMDSREYPDAQGFAADIRLMFSNCYKYN 390
Score = 54.3 bits (129), Expect = 3e-07
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Frame = +1
Query: 238 RQSLELQKCEEILHK-LVKYRFSWPFREPVTRDEAE--DYYDVIAHPMDFQTMQNKCSCG 408
R++ +LQ + ++ K L K++F+WPF +PV + DY+ +I +PMD T++ +
Sbjct: 33 RKTNQLQYMQNVVVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENN 92
Query: 409 SYRSVQEFLADMKQVFTNAELYN 477
Y S E + D +FTN +YN
Sbjct: 93 YYWSASECMQDFNTMFTNCYIYN 115
>ref|NP_075825.3| bromodomain-containing protein 3 isoform 2 [Mus musculus].
Length = 726
Score = 69.3 bits (168), Expect = 8e-12
Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Frame = +1
Query: 166 RPKPPPVDDAEVDELVLQTKRSSRRQSLELQKCEEILHKLVKYR---FSWPFREPVTRD- 333
RP PP D E E V Q + S L+ C+ IL +++ + ++WPF +PV +
Sbjct: 283 RPIKPPKKDLEDGE-VPQHAGKKGKLSEHLRHCDSILREMLSKKHAAYAWPFYKPVDAEA 341
Query: 334 -EAEDYYDVIAHPMDFQTMQNKCSCGSYRSVQEFLADMKQVFTNAELYN 477
E DY+D+I HPMD T++ K Y Q F AD++ +F+N YN
Sbjct: 342 LELHDYHDIIKHPMDLSTVKRKMDSREYPDAQGFAADIRLMFSNCYKYN 390
Score = 54.3 bits (129), Expect = 3e-07
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Frame = +1
Query: 238 RQSLELQKCEEILHK-LVKYRFSWPFREPVTRDEAE--DYYDVIAHPMDFQTMQNKCSCG 408
R++ +LQ + ++ K L K++F+WPF +PV + DY+ +I +PMD T++ +
Sbjct: 33 RKTNQLQYMQNVVVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENN 92
Query: 409 SYRSVQEFLADMKQVFTNAELYN 477
Y S E + D +FTN +YN
Sbjct: 93 YYWSASECMQDFNTMFTNCYIYN 115
>ref|NP_001107045.1| bromodomain-containing protein 3 isoform 2 [Mus musculus].
Length = 726
Score = 69.3 bits (168), Expect = 8e-12
Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Frame = +1
Query: 166 RPKPPPVDDAEVDELVLQTKRSSRRQSLELQKCEEILHKLVKYR---FSWPFREPVTRD- 333
RP PP D E E V Q + S L+ C+ IL +++ + ++WPF +PV +
Sbjct: 283 RPIKPPKKDLEDGE-VPQHAGKKGKLSEHLRHCDSILREMLSKKHAAYAWPFYKPVDAEA 341
Query: 334 -EAEDYYDVIAHPMDFQTMQNKCSCGSYRSVQEFLADMKQVFTNAELYN 477
E DY+D+I HPMD T++ K Y Q F AD++ +F+N YN
Sbjct: 342 LELHDYHDIIKHPMDLSTVKRKMDSREYPDAQGFAADIRLMFSNCYKYN 390
Score = 54.3 bits (129), Expect = 3e-07
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Frame = +1
Query: 238 RQSLELQKCEEILHK-LVKYRFSWPFREPVTRDEAE--DYYDVIAHPMDFQTMQNKCSCG 408
R++ +LQ + ++ K L K++F+WPF +PV + DY+ +I +PMD T++ +
Sbjct: 33 RKTNQLQYMQNVVVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENN 92
Query: 409 SYRSVQEFLADMKQVFTNAELYN 477
Y S E + D +FTN +YN
Sbjct: 93 YYWSASECMQDFNTMFTNCYIYN 115
>ref|NP_001191902.1| bromodomain-containing protein 2 [Mus musculus].
Length = 798
Score = 68.2 bits (165), Expect = 2e-11
Identities = 40/111 (36%), Positives = 60/111 (54%), Gaps = 7/111 (6%)
Frame = +1
Query: 166 RPKPPPVDDAEVDELVLQTKRSSRRQSL--ELQKCEEILHKLVKYR---FSWPFREPVTR 330
RP PP D + Q +SS++ L +L+ C IL +L+ + ++WPF +PV
Sbjct: 321 RPIKPPRKDLPDSQ---QQHQSSKKGKLSEQLKHCNGILKELLSKKHAAYAWPFYKPVDA 377
Query: 331 DEA--EDYYDVIAHPMDFQTMQNKCSCGSYRSVQEFLADMKQVFTNAELYN 477
DY+D+I HPMD T++ K YR QEF AD++ +F+N YN
Sbjct: 378 SALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYN 428
Score = 54.7 bits (130), Expect = 2e-07
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
Frame = +1
Query: 163 SRPKPPPVDDAEVDELVLQTKRSSRRQSLELQKCEEILHK-LVKYRFSWPFREPVTRDEA 339
+ P PP V + + R + +LQ +++ K L K++F+WPFR+PV +
Sbjct: 58 ANPPPPEVSNP----------KKPGRVTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKL 107
Query: 340 --EDYYDVIAHPMDFQTMQNKCSCGSYRSVQEFLADMKQVFTNAELYN 477
DY+ +I PMD T++ + Y + E + D +FTN +YN
Sbjct: 108 GLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYN 155
>ref|NP_034368.2| bromodomain-containing protein 2 [Mus musculus].
Length = 798
Score = 68.2 bits (165), Expect = 2e-11
Identities = 40/111 (36%), Positives = 60/111 (54%), Gaps = 7/111 (6%)
Frame = +1
Query: 166 RPKPPPVDDAEVDELVLQTKRSSRRQSL--ELQKCEEILHKLVKYR---FSWPFREPVTR 330
RP PP D + Q +SS++ L +L+ C IL +L+ + ++WPF +PV
Sbjct: 321 RPIKPPRKDLPDSQ---QQHQSSKKGKLSEQLKHCNGILKELLSKKHAAYAWPFYKPVDA 377
Query: 331 DEA--EDYYDVIAHPMDFQTMQNKCSCGSYRSVQEFLADMKQVFTNAELYN 477
DY+D+I HPMD T++ K YR QEF AD++ +F+N YN
Sbjct: 378 SALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYN 428
Score = 54.7 bits (130), Expect = 2e-07
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
Frame = +1
Query: 163 SRPKPPPVDDAEVDELVLQTKRSSRRQSLELQKCEEILHK-LVKYRFSWPFREPVTRDEA 339
+ P PP V + + R + +LQ +++ K L K++F+WPFR+PV +
Sbjct: 58 ANPPPPEVSNP----------KKPGRVTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKL 107
Query: 340 --EDYYDVIAHPMDFQTMQNKCSCGSYRSVQEFLADMKQVFTNAELYN 477
DY+ +I PMD T++ + Y + E + D +FTN +YN
Sbjct: 108 GLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYN 155
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 52,154,028
Number of extensions: 1367046
Number of successful extensions: 5934
Number of sequences better than 1.0e-05: 36
Number of HSP's gapped: 5866
Number of HSP's successfully gapped: 44
Length of query: 552
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 446
Effective length of database: 12,433,743
Effective search space: 5545449378
Effective search space used: 5545449378
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014080
(1656 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_115784.1| tyrosine-protein kinase BAZ1B [Homo sapiens]. 332 5e-91
Alignment gi|NP_113601.2| cat eye syndrome chromosome region, candidate 2... 74 3e-13
Alignment gi|NP_004450.3| nucleosome-remodeling factor subunit BPTF isofo... 70 4e-12
Alignment gi|NP_872579.2| nucleosome-remodeling factor subunit BPTF isofo... 70 4e-12
Alignment gi|NP_003875.3| histone acetyltransferase KAT2B [Homo sapiens]. 69 1e-11
Alignment gi|NP_031397.1| bromodomain-containing protein 3 [Homo sapiens]. 68 2e-11
Alignment gi|NP_005095.1| bromodomain-containing protein 2 isoform 1 [Hom... 68 2e-11
Alignment gi|NP_001186385.1| bromodomain-containing protein 2 isoform 3 [... 68 2e-11
Alignment gi|NP_001186384.1| bromodomain-containing protein 2 isoform 2 [... 68 2e-11
Alignment gi|NP_001106653.1| bromodomain-containing protein 2 isoform 1 [... 68 2e-11
>ref|NP_115784.1| tyrosine-protein kinase BAZ1B [Homo sapiens].
Length = 1483
Score = 332 bits (852), Expect = 5e-91
Identities = 159/194 (81%), Positives = 168/194 (86%)
Frame = +1
Query: 58 LRMRPRKTVRGRQGVVXXXXXXXXXXXXXXXXXXXSRPKPPPVDDAEVDELVLQTKRSSR 237
LR+RPRKT+RG+ V+ S+PK PPVDDAEVDELVLQTKRSSR
Sbjct: 1280 LRLRPRKTIRGKHSVIPPAARSGRRPGKKPHSTRRSQPKAPPVDDAEVDELVLQTKRSSR 1339
Query: 238 RQSLELQKCEEILHKLVKYRFSWPFREPVTRDEAEDYYDVIAHPMDFQTMQNKCSCGSYR 417
RQSLELQKCEEILHK+VKYRFSWPFREPVTRDEAEDYYDVI HPMDFQT+QNKCSCGSYR
Sbjct: 1340 RQSLELQKCEEILHKIVKYRFSWPFREPVTRDEAEDYYDVITHPMDFQTVQNKCSCGSYR 1399
Query: 418 SVQEFLADMKQVFTNAELYNCRGSHVLNCTVKTEQCLVALLHKHLPGHPYVRRKRKKFPD 597
SVQEFL DMKQVFTNAE+YNCRGSHVL+C VKTEQCLVALLHKHLPGHPYVRRKRKKFPD
Sbjct: 1400 SVQEFLTDMKQVFTNAEVYNCRGSHVLSCMVKTEQCLVALLHKHLPGHPYVRRKRKKFPD 1459
Query: 598 RLAEDEGDSEPEPV 639
RLAEDEGDSEPE V
Sbjct: 1460 RLAEDEGDSEPEAV 1473
>ref|NP_113601.2| cat eye syndrome chromosome region, candidate 2 [Homo sapiens].
Length = 1484
Score = 74.3 bits (181), Expect = 3e-13
Identities = 35/97 (36%), Positives = 52/97 (53%)
Frame = +1
Query: 268 EILHKLVKYRFSWPFREPVTRDEAEDYYDVIAHPMDFQTMQNKCSCGSYRSVQEFLADMK 447
++L + ++ SWPF EPV A +YY +I PMD +M+ K + G Y + +EF+ DMK
Sbjct: 445 KVLDVVKAHKDSWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMK 504
Query: 448 QVFTNAELYNCRGSHVLNCTVKTEQCLVALLHKHLPG 558
+F N YN S + E+C + KH PG
Sbjct: 505 TMFRNCRKYNGESSEYTKMSDNLERCFHRAMMKHFPG 541
>ref|NP_004450.3| nucleosome-remodeling factor subunit BPTF isoform 2 [Homo sapiens].
Length = 2903
Score = 70.5 bits (171), Expect = 4e-12
Identities = 34/92 (36%), Positives = 47/92 (51%)
Frame = +1
Query: 265 EEILHKLVKYRFSWPFREPVTRDEAEDYYDVIAHPMDFQTMQNKCSCGSYRSVQEFLADM 444
+ +L L ++ +WPF EPV ++A DYY VI PMD TM+ + Y + EF+ADM
Sbjct: 2794 KRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADM 2853
Query: 445 KQVFTNAELYNCRGSHVLNCTVKTEQCLVALL 540
++F N YN S C E V L
Sbjct: 2854 TKIFDNCRYYNPSDSPFYQCAEVLESFFVQKL 2885
>ref|NP_872579.2| nucleosome-remodeling factor subunit BPTF isoform 1 [Homo sapiens].
Length = 2920
Score = 70.5 bits (171), Expect = 4e-12
Identities = 34/92 (36%), Positives = 47/92 (51%)
Frame = +1
Query: 265 EEILHKLVKYRFSWPFREPVTRDEAEDYYDVIAHPMDFQTMQNKCSCGSYRSVQEFLADM 444
+ +L L ++ +WPF EPV ++A DYY VI PMD TM+ + Y + EF+ADM
Sbjct: 2811 KRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADM 2870
Query: 445 KQVFTNAELYNCRGSHVLNCTVKTEQCLVALL 540
++F N YN S C E V L
Sbjct: 2871 TKIFDNCRYYNPSDSPFYQCAEVLESFFVQKL 2902
>ref|NP_003875.3| histone acetyltransferase KAT2B [Homo sapiens].
Length = 832
Score = 68.9 bits (167), Expect = 1e-11
Identities = 33/80 (41%), Positives = 48/80 (60%)
Frame = +1
Query: 265 EEILHKLVKYRFSWPFREPVTRDEAEDYYDVIAHPMDFQTMQNKCSCGSYRSVQEFLADM 444
+ IL ++ ++ +WPF EPV R EA YY+VI PMD +TM + Y S + F+AD+
Sbjct: 733 KSILQQVKSHQSAWPFMEPVKRTEAPGYYEVIRFPMDLKTMSERLKNRYYVSKKLFMADL 792
Query: 445 KQVFTNAELYNCRGSHVLNC 504
++VFTN + YN S C
Sbjct: 793 QRVFTNCKEYNPPESEYYKC 812
>ref|NP_031397.1| bromodomain-containing protein 3 [Homo sapiens].
Length = 726
Score = 68.2 bits (165), Expect = 2e-11
Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Frame = +1
Query: 166 RPKPPPVDDAEVDELVLQTKRSSRRQSLELQKCEEILHKLVKYR---FSWPFREPVTRD- 333
RP PP D E E V Q + S L+ C+ IL +++ + ++WPF +PV +
Sbjct: 284 RPIKPPKKDLEDGE-VPQHAGKKGKLSEHLRYCDSILREMLSKKHAAYAWPFYKPVDAEA 342
Query: 334 -EAEDYYDVIAHPMDFQTMQNKCSCGSYRSVQEFLADMKQVFTNAELYN 477
E DY+D+I HPMD T++ K Y Q F AD++ +F+N YN
Sbjct: 343 LELHDYHDIIKHPMDLSTVKRKMDGREYPDAQGFAADVRLMFSNCYKYN 391
Score = 54.3 bits (129), Expect = 3e-07
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Frame = +1
Query: 238 RQSLELQKCEEILHK-LVKYRFSWPFREPVTRDEAE--DYYDVIAHPMDFQTMQNKCSCG 408
R++ +LQ + ++ K L K++F+WPF +PV + DY+ +I +PMD T++ +
Sbjct: 34 RKTNQLQYMQNVVVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENN 93
Query: 409 SYRSVQEFLADMKQVFTNAELYN 477
Y S E + D +FTN +YN
Sbjct: 94 YYWSASECMQDFNTMFTNCYIYN 116
>ref|NP_005095.1| bromodomain-containing protein 2 isoform 1 [Homo sapiens].
Length = 801
Score = 68.2 bits (165), Expect = 2e-11
Identities = 40/111 (36%), Positives = 60/111 (54%), Gaps = 7/111 (6%)
Frame = +1
Query: 166 RPKPPPVDDAEVDELVLQTKRSSRRQSL--ELQKCEEILHKLVKYR---FSWPFREPVTR 330
RP PP D + Q +SS++ L +L+ C IL +L+ + ++WPF +PV
Sbjct: 322 RPIKPPRKDLPDSQ---QQHQSSKKGKLSEQLKHCNGILKELLSKKHAAYAWPFYKPVDA 378
Query: 331 DEA--EDYYDVIAHPMDFQTMQNKCSCGSYRSVQEFLADMKQVFTNAELYN 477
DY+D+I HPMD T++ K YR QEF AD++ +F+N YN
Sbjct: 379 SALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYN 429
Score = 54.7 bits (130), Expect = 3e-07
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
Frame = +1
Query: 163 SRPKPPPVDDAEVDELVLQTKRSSRRQSLELQKCEEILHK-LVKYRFSWPFREPVTRDEA 339
+ P PP V + + R + +LQ +++ K L K++F+WPFR+PV +
Sbjct: 59 ANPPPPEVSNP----------KKPGRVTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKL 108
Query: 340 --EDYYDVIAHPMDFQTMQNKCSCGSYRSVQEFLADMKQVFTNAELYN 477
DY+ +I PMD T++ + Y + E + D +FTN +YN
Sbjct: 109 GLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYN 156
>ref|NP_001186385.1| bromodomain-containing protein 2 isoform 3 [Homo sapiens].
Length = 754
Score = 68.2 bits (165), Expect = 2e-11
Identities = 40/111 (36%), Positives = 60/111 (54%), Gaps = 7/111 (6%)
Frame = +1
Query: 166 RPKPPPVDDAEVDELVLQTKRSSRRQSL--ELQKCEEILHKLVKYR---FSWPFREPVTR 330
RP PP D + Q +SS++ L +L+ C IL +L+ + ++WPF +PV
Sbjct: 275 RPIKPPRKDLPDSQ---QQHQSSKKGKLSEQLKHCNGILKELLSKKHAAYAWPFYKPVDA 331
Query: 331 DEA--EDYYDVIAHPMDFQTMQNKCSCGSYRSVQEFLADMKQVFTNAELYN 477
DY+D+I HPMD T++ K YR QEF AD++ +F+N YN
Sbjct: 332 SALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYN 382
Score = 54.7 bits (130), Expect = 3e-07
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
Frame = +1
Query: 163 SRPKPPPVDDAEVDELVLQTKRSSRRQSLELQKCEEILHK-LVKYRFSWPFREPVTRDEA 339
+ P PP V + + R + +LQ +++ K L K++F+WPFR+PV +
Sbjct: 12 ANPPPPEVSNP----------KKPGRVTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKL 61
Query: 340 --EDYYDVIAHPMDFQTMQNKCSCGSYRSVQEFLADMKQVFTNAELYN 477
DY+ +I PMD T++ + Y + E + D +FTN +YN
Sbjct: 62 GLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYN 109
>ref|NP_001186384.1| bromodomain-containing protein 2 isoform 2 [Homo sapiens].
Length = 836
Score = 68.2 bits (165), Expect = 2e-11
Identities = 40/111 (36%), Positives = 60/111 (54%), Gaps = 7/111 (6%)
Frame = +1
Query: 166 RPKPPPVDDAEVDELVLQTKRSSRRQSL--ELQKCEEILHKLVKYR---FSWPFREPVTR 330
RP PP D + Q +SS++ L +L+ C IL +L+ + ++WPF +PV
Sbjct: 322 RPIKPPRKDLPDSQ---QQHQSSKKGKLSEQLKHCNGILKELLSKKHAAYAWPFYKPVDA 378
Query: 331 DEA--EDYYDVIAHPMDFQTMQNKCSCGSYRSVQEFLADMKQVFTNAELYN 477
DY+D+I HPMD T++ K YR QEF AD++ +F+N YN
Sbjct: 379 SALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYN 429
Score = 54.7 bits (130), Expect = 3e-07
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
Frame = +1
Query: 163 SRPKPPPVDDAEVDELVLQTKRSSRRQSLELQKCEEILHK-LVKYRFSWPFREPVTRDEA 339
+ P PP V + + R + +LQ +++ K L K++F+WPFR+PV +
Sbjct: 59 ANPPPPEVSNP----------KKPGRVTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKL 108
Query: 340 --EDYYDVIAHPMDFQTMQNKCSCGSYRSVQEFLADMKQVFTNAELYN 477
DY+ +I PMD T++ + Y + E + D +FTN +YN
Sbjct: 109 GLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYN 156
>ref|NP_001106653.1| bromodomain-containing protein 2 isoform 1 [Homo sapiens].
Length = 801
Score = 68.2 bits (165), Expect = 2e-11
Identities = 40/111 (36%), Positives = 60/111 (54%), Gaps = 7/111 (6%)
Frame = +1
Query: 166 RPKPPPVDDAEVDELVLQTKRSSRRQSL--ELQKCEEILHKLVKYR---FSWPFREPVTR 330
RP PP D + Q +SS++ L +L+ C IL +L+ + ++WPF +PV
Sbjct: 322 RPIKPPRKDLPDSQ---QQHQSSKKGKLSEQLKHCNGILKELLSKKHAAYAWPFYKPVDA 378
Query: 331 DEA--EDYYDVIAHPMDFQTMQNKCSCGSYRSVQEFLADMKQVFTNAELYN 477
DY+D+I HPMD T++ K YR QEF AD++ +F+N YN
Sbjct: 379 SALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYN 429
Score = 54.7 bits (130), Expect = 3e-07
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
Frame = +1
Query: 163 SRPKPPPVDDAEVDELVLQTKRSSRRQSLELQKCEEILHK-LVKYRFSWPFREPVTRDEA 339
+ P PP V + + R + +LQ +++ K L K++F+WPFR+PV +
Sbjct: 59 ANPPPPEVSNP----------KKPGRVTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKL 108
Query: 340 --EDYYDVIAHPMDFQTMQNKCSCGSYRSVQEFLADMKQVFTNAELYN 477
DY+ +I PMD T++ + Y + E + D +FTN +YN
Sbjct: 109 GLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYN 156
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 61,561,125
Number of extensions: 1630092
Number of successful extensions: 7401
Number of sequences better than 1.0e-05: 45
Number of HSP's gapped: 7332
Number of HSP's successfully gapped: 57
Length of query: 552
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 444
Effective length of database: 14,737,052
Effective search space: 6543251088
Effective search space used: 6543251088
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014080
(1656 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 1183 0.0
>Sscrofa_Chr03
|| Length = 144787322
Score = 1183 bits (597), Expect = 0.0
Identities = 607/609 (99%), Gaps = 1/609 (0%)
Strand = Plus / Minus
Query: 1048 acttttctagttattaaaagttgcttgtttcagcagtgatcttgtataaagaacatcttg 1107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10461692 acttttctagttattaaaagttgcttgtttcagcagtgatcttgtataaagaacatcttg 10461633
Query: 1108 taaaaacatttctgtcgtcttgctttggcacatgtacagtacaatttatatgataaggtg 1167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10461632 taaaaacatttctgtcgtcttgctttggcacatgtacagtacaatttatatgataaggtg 10461573
Query: 1168 tttgctttacttttgcccgtttcctccctcagcccatgctccccgttagagaagctgggc 1227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10461572 tttgctttacttttgcccgtttcctccctcagcccatgctccccgttagagaagctgggc 10461513
Query: 1228 tggggccatcggggcaagcagtggggacctggtcgggacagccctctgcctgccctggtg 1287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10461512 tggggccatcggggcaagcagtggggacctggtcgggacagccctctgcctgccctggtg 10461453
Query: 1288 gctgttgctgccgccttcacctgcagccgcccctgccatgtggttcaggcttcagactca 1347
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10461452 gctgttgctgccgccttcacctgcagccgcccctgccatgtggttcaggcttcagactcg 10461393
Query: 1348 ggactccctgagaacccgagtccctccgtgcccagtgtcagggtgggggatggaggggct 1407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10461392 ggactccctgagaacccgagtccctccgtgcccagtgtcagggtgggggatggaggggct 10461333
Query: 1408 cagcggccccttcctgcagtgagtctagcgctagtagttatgttgaggccagactttgta 1467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10461332 cagcggccccttcctgcagtgagtctagcgctagtagttatgttgaggccagactttgta 10461273
Query: 1468 gtcttctttccgtcttaagggcagattttgataaaaatgcaaaacagggtttaattttct 1527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10461272 gtcttctttccgtcttaagggcagattttgataaaaatgcaaaacagggtttaattttct 10461213
Query: 1528 tttctatcaactttgaatttggaaatttggagcacctaagctcttctgtacctatttaaa 1587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10461212 tttctatcaactttgaatttggaaatttggagcacctaagctcttctgtacctatttaaa 10461153
Query: 1588 tgaagggaaaagaacttcaccgagggggactgccgctcacagaacctgagaataaagcct 1647
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 10461152 tgaagggaaaagaacttcaccga-ggggactgccgctcacagaacctgagaataaagcct 10461094
Query: 1648 ctgaaagtg 1656
|||||||||
Sbjct: 10461093 ctgaaagtg 10461085
Score = 733 bits (370), Expect = 0.0
Identities = 376/378 (99%)
Strand = Plus / Minus
Query: 312 cagggagcccgtgaccagagacgaggccgaggactactacgacgtgatcgcccaccccat 371
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10462921 cagggagcctgtgaccagagacgaggccgaggactactacgacgtgatcgcccaccccat 10462862
Query: 372 ggacttccagacgatgcagaacaagtgttcctgtgggagctaccgctctgtgcaggagtt 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10462861 ggacttccagacgatgcagaacaagtgttcctgtgggagctaccgctctgtgcaggagtt 10462802
Query: 432 tctcgccgacatgaaacaagtgtttaccaacgccgagctttacaactgccgcggcagcca 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10462801 tctcgccgacatgaaacaagtgtttaccaacgccgagctttacaactgccgcggcagcca 10462742
Query: 492 cgtgctgaactgcacggtgaagacagaacagtgtctggtggctctgttgcataaacacct 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10462741 cgtgctgaactgcacggtgaagacagaacagtgtctggtggctctgttgcataaacacct 10462682
Query: 552 tcctggccacccgtacgtccgtaggaaacgcaagaagtttcccgatcggcttgccgaaga 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10462681 tcctggccacccgtacgtccgtaggaaacgcaagaagtttcccgatcggcttgccgaaga 10462622
Query: 612 tgaaggggacagtgagccagagcccgttgggcagtccaggggacgaagacagaagaaata 671
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 10462621 tgaaggggacagtgagccagagcctgttgggcagtccaggggacgaagacagaagaaata 10462562
Query: 672 gagaggcagggccctggt 689
||||||||||||||||||
Sbjct: 10462561 gagaggcagggccctggt 10462544
Score = 656 bits (331), Expect = 0.0
Identities = 331/331 (100%)
Strand = Plus / Minus
Query: 687 ggtgacggtatcagtgagtgccataccgaattctgtattcaccagcagcacgagagaggt 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10462053 ggtgacggtatcagtgagtgccataccgaattctgtattcaccagcagcacgagagaggt 10461994
Query: 747 gtggtctgttgagttgatcttggcagagtaaagggacatgtcccgcagccattcccgaat 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10461993 gtggtctgttgagttgatcttggcagagtaaagggacatgtcccgcagccattcccgaat 10461934
Query: 807 acccctcccctccttcgtgacggctctctccccactcccgccccgcctcaccccggcaaa 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10461933 acccctcccctccttcgtgacggctctctccccactcccgccccgcctcaccccggcaaa 10461874
Query: 867 gaaaaaacctaaggcacttcactcagagactggagccctgcttgtaaccaggcatagaac 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10461873 gaaaaaacctaaggcacttcactcagagactggagccctgcttgtaaccaggcatagaac 10461814
Query: 927 cttgactttgatgggtctggcagaagggtgttggagcccagcccacccacataccagaca 986
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10461813 cttgactttgatgggtctggcagaagggtgttggagcccagcccacccacataccagaca 10461754
Query: 987 agctcttaggggagcagaagaaaagcaggaa 1017
|||||||||||||||||||||||||||||||
Sbjct: 10461753 agctcttaggggagcagaagaaaagcaggaa 10461723
Score = 293 bits (148), Expect = 2e-76
Identities = 148/148 (100%)
Strand = Plus / Minus
Query: 65 tgagacctcgaaagactgtccggggcaggcagggtgtcgtccctcccgcagcaaggccag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10464457 tgagacctcgaaagactgtccggggcaggcagggtgtcgtccctcccgcagcaaggccag 10464398
Query: 125 gccgacgaccgggtaagaagcctcttcctaccaggaggtctcggccgaagccaccacccg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10464397 gccgacgaccgggtaagaagcctcttcctaccaggaggtctcggccgaagccaccacccg 10464338
Query: 185 tagacgatgctgaggttgatgagctggt 212
||||||||||||||||||||||||||||
Sbjct: 10464337 tagacgatgctgaggttgatgagctggt 10464310
Score = 210 bits (106), Expect = 2e-51
Identities = 106/106 (100%)
Strand = Plus / Minus
Query: 210 ggtgcttcagaccaagcggagctcccggaggcagagcctggagctgcagaagtgcgagga 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10463277 ggtgcttcagaccaagcggagctcccggaggcagagcctggagctgcagaagtgcgagga 10463218
Query: 270 gatcctccacaagctcgtgaagtaccgcttcagctggcccttcagg 315
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10463217 gatcctccacaagctcgtgaagtaccgcttcagctggcccttcagg 10463172
Score = 127 bits (64), Expect = 2e-26
Identities = 64/64 (100%)
Strand = Plus / Minus
Query: 1 tcacacaagtatcagcttttgctccgacaagattgtggggatgcgtgtcggctttttctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10464842 tcacacaagtatcagcttttgctccgacaagattgtggggatgcgtgtcggctttttctc 10464783
Query: 61 cgga 64
||||
Sbjct: 10464782 cgga 10464779
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 47,121,832
Number of extensions: 336
Number of successful extensions: 336
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 335
Number of HSP's successfully gapped: 6
Length of query: 1656
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1634
Effective length of database: 2,808,408,574
Effective search space: 4588939609916
Effective search space used: 4588939609916
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)