Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014082
(810 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002695021.1| PREDICTED: galectin-7-like [Bos taurus]. 236 2e-62
Alignment gi|XP_001255073.1| PREDICTED: galectin-7-like [Bos taurus]. 236 2e-62
Alignment gi|XP_002695023.1| PREDICTED: galectin-7-like [Bos taurus]. 235 4e-62
Alignment gi|NP_001029940.1| galectin-4 [Bos taurus]. 109 2e-24
Alignment gi|NP_001034266.1| galectin-9 isoform 1 [Bos taurus]. 90 3e-18
Alignment gi|NP_001015570.1| galectin-9 isoform 2 [Bos taurus]. 87 2e-17
Alignment gi|XP_002699418.1| PREDICTED: lectin, galactoside-binding, solu... 87 2e-17
Alignment gi|XP_597134.2| PREDICTED: lectin, galactoside-binding, soluble... 87 2e-17
Alignment gi|NP_001039419.1| galectin-8 [Bos taurus]. 78 1e-14
Alignment gi|XP_593263.3| PREDICTED: galectin 15-like [Bos taurus]. 70 2e-12
>ref|XP_002695021.1| PREDICTED: galectin-7-like [Bos taurus].
Length = 139
Score = 236 bits (602), Expect = 2e-62
Identities = 110/135 (81%), Positives = 124/135 (91%)
Frame = +3
Query: 261 FSMPHKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCGEEPGSEAALHFNPRLDESSVV 440
F++PHKT L +GIRVGTV+RIRG+VPD+AGRFYVNLLCGEEPGS+AALHFNPRLDES+VV
Sbjct: 5 FNVPHKTSLPEGIRVGTVLRIRGLVPDKAGRFYVNLLCGEEPGSDAALHFNPRLDESTVV 64
Query: 441 FNSLEHGAWGREERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTRVRA 620
FN+LE G WG EERG GIPFQRGQPFDVLLI T+EGFK V+ D EYHHFR+R+PP RVRA
Sbjct: 65 FNTLERGTWGAEERGSGIPFQRGQPFDVLLIATEEGFKAVIADSEYHHFRYRIPPGRVRA 124
Query: 621 VEVGGDLQLELVKIF 665
+EVGGDLQLELVKIF
Sbjct: 125 LEVGGDLQLELVKIF 139
>ref|XP_001255073.1| PREDICTED: galectin-7-like [Bos taurus].
Length = 139
Score = 236 bits (602), Expect = 2e-62
Identities = 110/135 (81%), Positives = 124/135 (91%)
Frame = +3
Query: 261 FSMPHKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCGEEPGSEAALHFNPRLDESSVV 440
F++PHKT L +GIRVGTV+RIRG+VPD+AGRFYVNLLCGEEPGS+AALHFNPRLDES+VV
Sbjct: 5 FNVPHKTSLPEGIRVGTVLRIRGLVPDKAGRFYVNLLCGEEPGSDAALHFNPRLDESTVV 64
Query: 441 FNSLEHGAWGREERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTRVRA 620
FN+LE G WG EERG GIPFQRGQPFDVLLI T+EGFK V+ D EYHHFR+R+PP RVRA
Sbjct: 65 FNTLERGTWGAEERGSGIPFQRGQPFDVLLIATEEGFKAVIADSEYHHFRYRIPPGRVRA 124
Query: 621 VEVGGDLQLELVKIF 665
+EVGGDLQLELVKIF
Sbjct: 125 LEVGGDLQLELVKIF 139
>ref|XP_002695023.1| PREDICTED: galectin-7-like [Bos taurus].
Length = 139
Score = 235 bits (599), Expect = 4e-62
Identities = 109/135 (80%), Positives = 124/135 (91%)
Frame = +3
Query: 261 FSMPHKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCGEEPGSEAALHFNPRLDESSVV 440
F++PHKT L +GIRVGTV+RIRG+VPD+AGRFY+NLLCGEEPGS+AALHFNPRLDES+VV
Sbjct: 5 FNVPHKTSLPEGIRVGTVLRIRGLVPDKAGRFYMNLLCGEEPGSDAALHFNPRLDESTVV 64
Query: 441 FNSLEHGAWGREERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTRVRA 620
FN+LE G WG EERG GIPFQRGQPFDVLLI T+EGFK V+ D EYHHFR+R+PP RVRA
Sbjct: 65 FNTLERGTWGAEERGSGIPFQRGQPFDVLLIATEEGFKAVIADSEYHHFRYRIPPGRVRA 124
Query: 621 VEVGGDLQLELVKIF 665
+EVGGDLQLELVKIF
Sbjct: 125 LEVGGDLQLELVKIF 139
>ref|NP_001029940.1| galectin-4 [Bos taurus].
Length = 332
Score = 109 bits (273), Expect = 2e-24
Identities = 52/132 (39%), Positives = 81/132 (61%), Gaps = 1/132 (0%)
Frame = +3
Query: 264 SMPHKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCGEEPGSEAALHFNPRLDE-SSVV 440
++P+ + G+RVG + I+GV + RF+VN G+ G++ A HFNPR D VV
Sbjct: 16 TLPYHNPIPGGLRVGMSVYIQGVASEHMKRFFVNFEVGQGQGADVAFHFNPRFDGWDKVV 75
Query: 441 FNSLEHGAWGREERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTRVRA 620
NS ++G+WG+EER +PF++G F+++ + E FKVVV +H F+HR+P V
Sbjct: 76 LNSKQNGSWGQEERKMSMPFRKGAAFELVFMVMTEHFKVVVNGTPFHEFKHRIPLQMVTH 135
Query: 621 VEVGGDLQLELV 656
+ V GDL L+ +
Sbjct: 136 LHVDGDLMLQSI 147
Score = 75.1 bits (183), Expect = 7e-14
Identities = 49/134 (36%), Positives = 67/134 (50%), Gaps = 2/134 (1%)
Frame = +3
Query: 267 MPHKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCGEEPGSEAALHFNPRLDESSVVFN 446
+P L G+ V + I+G +P A F +N G + ALH NPR+ E +VV N
Sbjct: 201 VPFNGRLQGGLIVRRTIIIKGYIPPTAKSFVINFKVGSS--GDVALHINPRMTEGAVVRN 258
Query: 447 SLEHGAWGREERGPGI-PFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPP-TRVRA 620
S +G+WG EER PF GQ FD+ + + FKV F HR+ RV
Sbjct: 259 SFLNGSWGSEERKVSYNPFGPGQFFDLSVRCGADRFKVYANGKHLFDFSHRLSAFQRVDL 318
Query: 621 VEVGGDLQLELVKI 662
VE+ GD+ L V+I
Sbjct: 319 VEIHGDVTLSYVQI 332
>ref|NP_001034266.1| galectin-9 isoform 1 [Bos taurus].
Length = 355
Score = 89.7 bits (221), Expect = 3e-18
Identities = 62/189 (32%), Positives = 90/189 (47%), Gaps = 5/189 (2%)
Frame = +3
Query: 108 PRARVCARYGRWVWKGVTVSQRGSHTLLLLKVPAAIPPRHHCRCHIPAMSGFSMPHKTLL 287
PR R G W ++Q HT+ P + P + + +P T +
Sbjct: 174 PRGRKSNPPGIWPANSAPIAQTFVHTIH--SAPGQMFPNPVIPPAVYPNPVYQLPFFTSI 231
Query: 288 ADGIRVGTVMRIRGVVPDQAGRFYVNLLCGEEPGSEAALHFNPRLDESSVVFNSLEHGAW 467
G+ + + G + A RFY+NL GS+ A H NPR +E++VV N+ +G+W
Sbjct: 232 LGGLYPSKSILVSGTILPSAQRFYINL----RSGSDIAFHLNPRFNENAVVRNTQINGSW 287
Query: 468 GREERG--PGIPFQRGQPFDVLLITTDEGFKVVVGD---LEYHHFRHRMPPTRVRAVEVG 632
G EER G+PF RGQ F V ++ FKV V EYHH +P + +EVG
Sbjct: 288 GSEERSLPRGMPFFRGQSFSVWIMCEGHCFKVAVDSQHLFEYHHRLKNLP--AINNLEVG 345
Query: 633 GDLQLELVK 659
GD+QL V+
Sbjct: 346 GDIQLTHVQ 354
Score = 79.7 bits (195), Expect = 3e-15
Identities = 47/132 (35%), Positives = 72/132 (54%), Gaps = 2/132 (1%)
Frame = +3
Query: 267 MPHKTLLADGIRVGTVMRIRG-VVPDQAGRFYVNLLCGEEPGSEAALHFNPRLDESS-VV 440
+P ++ G++ G + I G V+P RF VNL G S+ A HFNPR +E VV
Sbjct: 15 VPFTGMIQGGLQDGHKITIIGAVLPSGGNRFAVNLQTGYND-SDIAFHFNPRFEEGGYVV 73
Query: 441 FNSLEHGAWGREERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTRVRA 620
N+ + G+WG EER +PFQRG F++ F+V+V + + HR+P R+ A
Sbjct: 74 CNTKQRGSWGTEERKMHMPFQRGCSFELCFQVQSSEFRVMVNGNLFTQYAHRVPFHRIDA 133
Query: 621 VEVGGDLQLELV 656
+ + G +QL +
Sbjct: 134 ISITGVVQLSSI 145
>ref|NP_001015570.1| galectin-9 isoform 2 [Bos taurus].
Length = 323
Score = 87.0 bits (214), Expect = 2e-17
Identities = 52/138 (37%), Positives = 75/138 (54%), Gaps = 5/138 (3%)
Frame = +3
Query: 261 FSMPHKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCGEEPGSEAALHFNPRLDESSVV 440
+ +P T + G+ + + G + A RFY+NL GS+ A H NPR +E++VV
Sbjct: 191 YQLPFFTSILGGLYPSKSILVSGTILPSAQRFYINL----RSGSDIAFHLNPRFNENAVV 246
Query: 441 FNSLEHGAWGREERG--PGIPFQRGQPFDVLLITTDEGFKVVVGD---LEYHHFRHRMPP 605
N+ +G+WG EER G+PF RGQ F V ++ FKV V EYHH +P
Sbjct: 247 RNTQINGSWGSEERSLPRGMPFFRGQSFSVWIMCEGHCFKVAVDSQHLFEYHHRLKNLP- 305
Query: 606 TRVRAVEVGGDLQLELVK 659
+ +EVGGD+QL V+
Sbjct: 306 -AINNLEVGGDIQLTHVQ 322
Score = 81.3 bits (199), Expect = 9e-16
Identities = 51/152 (33%), Positives = 76/152 (50%), Gaps = 2/152 (1%)
Frame = +3
Query: 267 MPHKTLLADGIRVGTVMRIRG-VVPDQAGRFYVNLLCGEEPGSEAALHFNPRLDESS-VV 440
+P ++ G++ G + I G V+P RF VNL G S+ A HFNPR +E VV
Sbjct: 15 VPFTGMIQGGLQDGHKITIIGAVLPSGGNRFAVNLQTGYND-SDIAFHFNPRFEEGGYVV 73
Query: 441 FNSLEHGAWGREERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTRVRA 620
N+ + G+WG EER +PFQRG F++ F+V+V + + HR+P R+ A
Sbjct: 74 CNTKQRGSWGTEERKMHMPFQRGCSFELCFQVQSSEFRVMVNGNLFTQYAHRVPFHRIDA 133
Query: 621 VEVGGDLQLELVKIF*ALAGGRVVGGPQGSWP 716
+ + G +QL + P G WP
Sbjct: 134 ISITGVVQLSSISF-----------QPPGIWP 154
>ref|XP_002699418.1| PREDICTED: lectin, galactoside-binding, soluble, 12-like [Bos
taurus].
Length = 314
Score = 87.0 bits (214), Expect = 2e-17
Identities = 48/134 (35%), Positives = 73/134 (54%), Gaps = 4/134 (2%)
Frame = +3
Query: 267 MPHKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCG--EEPGSEAALHFNPRLDESS-- 434
+P T + G+R G ++ ++G VP A RF V+ CG P + A+HFNPR +
Sbjct: 25 IPFVTTIFGGLRAGKMVMLQGAVPLNAHRFQVDFQCGCSLHPRPDIAIHFNPRFHTTKPH 84
Query: 435 VVFNSLEHGAWGREERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTRV 614
V+ NSL G W E R P + QRG F +L + +E KV V + H+R+R+P +RV
Sbjct: 85 VICNSLYRGRWQVEARWPHVALQRGASFLILFLFGNEEMKVSVNGQHFLHYRYRLPLSRV 144
Query: 615 RAVEVGGDLQLELV 656
+ + GD+ + V
Sbjct: 145 DTLGIFGDISVTAV 158
>ref|XP_597134.2| PREDICTED: lectin, galactoside-binding, soluble, 12-like [Bos
taurus].
Length = 314
Score = 87.0 bits (214), Expect = 2e-17
Identities = 48/134 (35%), Positives = 73/134 (54%), Gaps = 4/134 (2%)
Frame = +3
Query: 267 MPHKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCG--EEPGSEAALHFNPRLDESS-- 434
+P T + G+R G ++ ++G VP A RF V+ CG P + A+HFNPR +
Sbjct: 25 IPFVTTIFGGLRAGKMVMLQGAVPLNAHRFQVDFQCGCSLHPRPDIAIHFNPRFHTTKPH 84
Query: 435 VVFNSLEHGAWGREERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTRV 614
V+ NSL G W E R P + QRG F +L + +E KV V + H+R+R+P +RV
Sbjct: 85 VICNSLYRGRWQVEARWPHVALQRGASFLILFLFGNEEMKVSVNGQHFLHYRYRLPLSRV 144
Query: 615 RAVEVGGDLQLELV 656
+ + GD+ + V
Sbjct: 145 DTLGIFGDISVTAV 158
>ref|NP_001039419.1| galectin-8 [Bos taurus].
Length = 357
Score = 77.8 bits (190), Expect = 1e-14
Identities = 41/133 (30%), Positives = 76/133 (57%), Gaps = 3/133 (2%)
Frame = +3
Query: 267 MPHKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCGE--EPGSEAALHFNPRLDESS-V 437
+P+ +++ + GT++ +RG VP + RF V+L CG +P ++ A HFNPR ++ V
Sbjct: 16 IPYVGTISEQLEPGTLIVLRGHVPSDSDRFQVDLQCGSSVKPRADVAFHFNPRFKRANCV 75
Query: 438 VFNSLEHGAWGREERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTRVR 617
V N+L + WG EE +PF++ + F+++++ E F+V V + HR+ P R+
Sbjct: 76 VCNTLRNEKWGWEEITYDMPFKKEKSFEIVIMVLKEKFQVAVNGRHTLLYAHRISPERID 135
Query: 618 AVEVGGDLQLELV 656
+ + G + + V
Sbjct: 136 TLGIYGKVIIHSV 148
Score = 66.6 bits (161), Expect = 2e-11
Identities = 43/130 (33%), Positives = 65/130 (50%), Gaps = 2/130 (1%)
Frame = +3
Query: 264 SMPHKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCGEEPGSEAALHFNPRLDESSVVF 443
++P L + G + I+G V A F V+LL G+ + ALH NPRL+ + V
Sbjct: 224 TLPFVARLNSSMGPGRTIVIKGEVNTNAKGFTVDLLSGKS--KDIALHLNPRLNVKAFVR 281
Query: 444 NSLEHGAWGREERG-PGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPP-TRVR 617
NS AWG EER PF G F++++ FKV V + ++HR ++V
Sbjct: 282 NSFLQEAWGEEERNITCFPFSPGMYFEMIIYCDAREFKVAVNGVHSLEYKHRFKELSKVD 341
Query: 618 AVEVGGDLQL 647
+E+ GD+ L
Sbjct: 342 TLEIDGDIHL 351
>ref|XP_593263.3| PREDICTED: galectin 15-like [Bos taurus].
Length = 138
Score = 70.1 bits (170), Expect = 2e-12
Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Frame = +3
Query: 264 SMPHKTLLADGIRVGTVMRIRGVVPDQAGR---FYVNLLCGEEPGSEAALHFNPRLDESS 434
S+P+ + + VG +++I G + G+ V+ G E S+ A HF + S
Sbjct: 3 SLPNPYQQSVSLAVGFMVKIMGNLESSCGKNPELVVDFCTGIEEDSDIAFHFRVYTN-SM 61
Query: 435 VVFNSLEHGAWGREERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTRV 614
VV NS + G W E+R PF GQPF++ + + +KV V + + F HR+P V
Sbjct: 62 VVMNSFQKGGWQEEKRMFSDPFMPGQPFELRFLVLENEYKVFVNNESFCQFAHRLPLQSV 121
Query: 615 RAVEVGGDLQLELVKIF 665
+ ++V GD L V F
Sbjct: 122 KMLKVKGDTVLTSVDTF 138
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 26,313,014
Number of extensions: 741753
Number of successful extensions: 3653
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 3619
Number of HSP's successfully gapped: 27
Length of query: 270
Length of database: 17,681,374
Length adjustment: 101
Effective length of query: 169
Effective length of database: 14,339,486
Effective search space: 2423373134
Effective search space used: 2423373134
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Animal-Genome cDNA 20110601C-014082
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014082
(810 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_855387.1| PREDICTED: similar to Galectin-4 (Lactose-bindi... 225 3e-59
Alignment gi|XP_540894.2| PREDICTED: similar to lectin, galactoside-bindi... 92 6e-19
Alignment gi|NP_001003345.1| galectin-9 [Canis lupus familiaris]. 76 4e-14
Alignment gi|XP_536335.2| PREDICTED: similar to galectin 8 isoform a [Can... 72 5e-13
Alignment gi|NP_001183972.1| galectin-3 [Canis lupus familiaris]. 72 8e-13
Alignment gi|XP_861690.1| PREDICTED: similar to lectin, galactoside-bindi... 60 2e-09
Alignment gi|XP_531742.1| PREDICTED: similar to lectin, galactoside-bindi... 60 2e-09
Alignment gi|XP_547010.2| PREDICTED: similar to galectin-related inter-fi... 55 8e-08
Alignment gi|NP_001188417.1| galectin-1 [Canis lupus familiaris]. 53 3e-07
Alignment gi|XP_538509.2| PREDICTED: similar to Galectin-5 (RL-18) [Canis... 52 5e-07
>ref|XP_855387.1| PREDICTED: similar to Galectin-4 (Lactose-binding lectin 4) (L-36
lactose binding protein) (L36LBP) (Antigen NY-CO-27)
[Canis familiaris].
Length = 798
Score = 225 bits (574), Expect = 3e-59
Identities = 112/159 (70%), Positives = 125/159 (78%), Gaps = 21/159 (13%)
Frame = +3
Query: 252 MSGFSMPHKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCGEEPGSEAALHFNPRLDES 431
++G ++PHKT L +GIRVGTVMRIRGVVP++AGRFYVNLLCGE PGSEAALHFNPRLDES
Sbjct: 640 LAGRNVPHKTSLPEGIRVGTVMRIRGVVPNKAGRFYVNLLCGEAPGSEAALHFNPRLDES 699
Query: 432 SVVFNSLEHGAWGREERGPGIPFQRGQPFDVLLITTDEGFK------------------- 554
+VVFN+LE GAWGREERG GIPFQRGQPFDVLLI TDEGFK
Sbjct: 700 TVVFNTLEQGAWGREERGTGIPFQRGQPFDVLLIATDEGFKRIRTGVRGQGRGRARSRER 759
Query: 555 --VVVGDLEYHHFRHRMPPTRVRAVEVGGDLQLELVKIF 665
VVGD EYHHFR+R+PP RVR +EVGGDLQLE V +F
Sbjct: 760 GPAVVGDSEYHHFRYRIPPARVRLLEVGGDLQLESVSVF 798
Score = 88.6 bits (218), Expect(2) = 7e-25
Identities = 45/70 (64%), Positives = 53/70 (75%)
Frame = -2
Query: 557 HLEAFVGGDEQHVEGLPALEGNARASLLSAPGSVLQAVEDHRGLVQPRVEMXXXXXXXXX 378
HLEAFV GDE+HVEGLPALEG+ARASLL+APG++LQ VEDH GL+Q +EM
Sbjct: 437 HLEAFVRGDEEHVEGLPALEGDARASLLAAPGALLQGVEDHGGLIQAGIEMQRSLAPRGL 496
Query: 377 XXXQVYVEPA 348
QV+VEPA
Sbjct: 497 AAQQVHVEPA 506
Score = 43.9 bits (102), Expect(2) = 7e-25
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = -3
Query: 349 PAWSGTTPRILITVPTRMPSASKVL 275
PA GTTPRILITVPTRMPS S+VL
Sbjct: 505 PALFGTTPRILITVPTRMPSGSEVL 529
Score = 104 bits (260), Expect = 8e-23
Identities = 64/199 (32%), Positives = 99/199 (49%), Gaps = 7/199 (3%)
Frame = +3
Query: 126 ARYGRWVWKGVTVSQRGSHTLLLLKVPAAIPPRHHCRCHIPAMSGF------SMPHKTLL 287
AR W +K + H+LLL PP + G+ ++P+ +
Sbjct: 12 ARQNAW-YKSHPLPAIYHHSLLLHLFSLDEPPAQPLKMAYVPAPGYQPTYNPTLPYNKPI 70
Query: 288 ADGIRVGTVMRIRGVVPDQAGRFYVNLLCGEEPGSEAALHFNPRLDE-SSVVFNSLEHGA 464
G+ VG + I+G+ + RF VN + G PGS+ A HFNPR D VVFNS G
Sbjct: 71 PGGLSVGMSVYIQGITSEHMRRFCVNFVAGAHPGSDIAFHFNPRFDGWDKVVFNSHLGGK 130
Query: 465 WGREERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTRVRAVEVGGDLQ 644
WG EE+ +PF++G F+++ + E +KVVV ++ F HR+P V ++V GD++
Sbjct: 131 WGSEEKKRSMPFRKGTHFELVFMVLAEHYKVVVNGNPFYEFGHRLPLQLVTHLQVEGDVE 190
Query: 645 LELVKIF*ALAGGRVVGGP 701
L+ + GG + GP
Sbjct: 191 LQSINFI----GGTPIPGP 205
Score = 70.5 bits (171), Expect = 2e-12
Identities = 56/171 (32%), Positives = 82/171 (47%), Gaps = 9/171 (5%)
Frame = +3
Query: 174 GSHTLLLLKVPAAIPPRHHCR--CHIPAMSG---FS--MPHKTLLADGIRVGTVMRIRGV 332
G H L+ L P P H + +P M G F+ +P + L G+ V + I+G
Sbjct: 204 GPHPLVTLGAPG---PGHTQQQPSSLPTMEGPPVFNPPVPFRKRLQGGLTVRRTVIIKGF 260
Query: 333 VPDQAGRFYVNLLCGEEPGSEAALHFNPRLDESSVVFNSLEHGAWGREERGPGI-PFQRG 509
VP + F +N + E + ALH NPRL E VV NS +G+WG E+R PF G
Sbjct: 261 VPFTSKSFVINFMV--ESSGDLALHINPRLTEGLVVRNSCLNGSWGSEDRKLSYNPFIPG 318
Query: 510 QPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTR-VRAVEVGGDLQLELVK 659
Q FD+ + + FKV F HR+ + V +E+ GD+ L ++
Sbjct: 319 QFFDLSIRCGMDRFKVYANGQHLFDFSHRLLALQNVDMLEINGDVTLSYIQ 369
>ref|XP_540894.2| PREDICTED: similar to lectin, galactoside-binding, soluble, 12
(galectin 12) [Canis familiaris].
Length = 314
Score = 92.0 bits (227), Expect = 6e-19
Identities = 46/134 (34%), Positives = 78/134 (58%), Gaps = 4/134 (2%)
Frame = +3
Query: 267 MPHKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCG--EEPGSEAALHFNPRLDESS-- 434
+P+ T + G+R G ++ ++G+VP+ A RF V+ CG P + A+HFNPR +
Sbjct: 25 VPYVTTIFGGLRAGKMVMLQGMVPEDAHRFQVDFQCGCSLHPRPDIAIHFNPRFHTTKPH 84
Query: 435 VVFNSLEHGAWGREERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTRV 614
V+ N+L+HG W E R P + QRG F +L + +E KV V + H+ +R+P +RV
Sbjct: 85 VICNTLQHGRWQAEARWPHLTLQRGASFLILFLFGNEEMKVSVNGQHFLHYHYRLPLSRV 144
Query: 615 RAVEVGGDLQLELV 656
+ + G++ +E +
Sbjct: 145 DTLGIFGNILVEAI 158
>ref|NP_001003345.1| galectin-9 [Canis lupus familiaris].
Length = 323
Score = 75.9 bits (185), Expect = 4e-14
Identities = 45/128 (35%), Positives = 66/128 (51%), Gaps = 4/128 (3%)
Frame = +3
Query: 285 LADGIRV---GTVMRIRGVVPDQAGRFYVNLLCGEEPGSEAALHFNPRLDESS-VVFNSL 452
L DG+++ GT++ G RF VN G S+ A HFNPR +E VV N+
Sbjct: 25 LQDGLKITINGTILYCNGT------RFAVNFHSGHSD-SDIAFHFNPRFEEGGYVVCNTK 77
Query: 453 EHGAWGREERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTRVRAVEVG 632
+ G+WG EER +PFQ G PF++ + FKV V + + HR+P V + +
Sbjct: 78 QKGSWGSEERKMQMPFQMGNPFELCFMVNSCDFKVTVNGSHFTQYSHRVPFHYVDTLSIT 137
Query: 633 GDLQLELV 656
G +QL +
Sbjct: 138 GAVQLSYI 145
Score = 70.1 bits (170), Expect = 2e-12
Identities = 45/136 (33%), Positives = 69/136 (50%), Gaps = 3/136 (2%)
Frame = +3
Query: 261 FSMPHKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCGEEPGSEAALHFNPRLDESSVV 440
+ MP T + G+ + + G V A RF++NL G++ A H NPR +E++VV
Sbjct: 191 YPMPFFTSIPGGLYPSKSIIVSGTVLPGAKRFHINL----RSGNDIAFHLNPRFNENTVV 246
Query: 441 FNSLEHGAWGREERG--PGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPP-TR 611
N + +WG EER +PF +GQ F V ++ FKV V + HR+
Sbjct: 247 RNMQINNSWGSEERSLPRKMPFVQGQSFSVWIMCEGHCFKVAVDGEHLFEYYHRLKNLLA 306
Query: 612 VRAVEVGGDLQLELVK 659
+ +EV GD+QL V+
Sbjct: 307 INNMEVAGDVQLTHVQ 322
>ref|XP_536335.2| PREDICTED: similar to galectin 8 isoform a [Canis familiaris].
Length = 357
Score = 72.4 bits (176), Expect = 5e-13
Identities = 39/133 (29%), Positives = 73/133 (54%), Gaps = 3/133 (2%)
Frame = +3
Query: 267 MPHKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCGE--EPGSEAALHFNPRLDESS-V 437
+P+ + + GT++ IRG VP + RF V+L CG +P ++ A HFNPR S +
Sbjct: 16 IPYVGTIPGQLEPGTLIVIRGHVPCDSDRFQVDLQCGSSVKPRADVAFHFNPRFKWSDCI 75
Query: 438 VFNSLEHGAWGREERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTRVR 617
V N+L++ WG EE PF++ + F+++++ + F+V V + HR+ P ++
Sbjct: 76 VCNTLKNEKWGWEEITYDTPFKKEKSFEIVIMVLKDKFQVAVNGKHILLYAHRITPGKID 135
Query: 618 AVEVGGDLQLELV 656
+ + G + + +
Sbjct: 136 TLGIYGKVNVHSI 148
Score = 65.5 bits (158), Expect = 6e-11
Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 2/130 (1%)
Frame = +3
Query: 264 SMPHKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCGEEPGSEAALHFNPRLDESSVVF 443
++P L + G + I+G V A F V+L+ G+ + ALH NPRL+ + V
Sbjct: 224 TLPFTARLNSSMGPGRTVVIKGEVNKTAKGFNVDLVSGKS--KDIALHLNPRLNIKAFVR 281
Query: 444 NSLEHGAWGREERG-PGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPP-TRVR 617
NS H +WG EER PF G F++++ FKV V + ++HR + +
Sbjct: 282 NSFLHESWGEEERNITCFPFSPGMYFEMIIYCDVREFKVAVNGVHSLEYKHRFKELSNID 341
Query: 618 AVEVGGDLQL 647
+E+ GD+ L
Sbjct: 342 TLEIDGDIHL 351
>ref|NP_001183972.1| galectin-3 [Canis lupus familiaris].
Length = 287
Score = 71.6 bits (174), Expect = 8e-13
Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 4/139 (2%)
Frame = +3
Query: 243 IPAMSGFSMPHKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCGEEPGSEAALHFNPRL 422
IPA ++P+ L G++ ++ I G V A R ++ + G++ A HFNPR
Sbjct: 146 IPA-GPLTVPYDLPLPGGVKPRMLITILGTVRPSANRLALDF----KRGNDVAFHFNPRF 200
Query: 423 DESS---VVFNSLEHGAWGREERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRH 593
+E + +V N+ WG+EER PF+ G+PF + ++ + FKV V D + H
Sbjct: 201 NEDNKRVIVCNTKLDNIWGKEERQAAFPFESGKPFKIQVLVESDHFKVAVNDAHLLQYNH 260
Query: 594 RMPP-TRVRAVEVGGDLQL 647
RM + + + GD+ L
Sbjct: 261 RMKNLPEISKLGISGDIDL 279
>ref|XP_861690.1| PREDICTED: similar to lectin, galactoside-binding, soluble, 2
isoform 2 [Canis familiaris].
Length = 121
Score = 60.1 bits (144), Expect = 2e-09
Identities = 38/122 (31%), Positives = 64/122 (52%)
Frame = +3
Query: 297 IRVGTVMRIRGVVPDQAGRFYVNLLCGEEPGSEAALHFNPRLDESSVVFNSLEHGAWGRE 476
+++G ++I+G + A F +NL G + + LHFNPR ES +V NS + G WG+E
Sbjct: 3 MKLGGTLKIKGKIAGDADGFVINLGQGSD---KLNLHFNPRFHESVIVCNSRD-GNWGQE 58
Query: 477 ERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTRVRAVEVGGDLQLELV 656
+R + F G + ++GFKV + D F +R+ + + + V G L++
Sbjct: 59 QRDKHMCFSPGSEVKFTVTFENDGFKVKLPDGHQLTFPNRLGHSHLSYLGVQGGLKVSSF 118
Query: 657 KI 662
KI
Sbjct: 119 KI 120
>ref|XP_531742.1| PREDICTED: similar to lectin, galactoside-binding, soluble, 2
isoform 1 [Canis familiaris].
Length = 130
Score = 60.1 bits (144), Expect = 2e-09
Identities = 38/122 (31%), Positives = 64/122 (52%)
Frame = +3
Query: 297 IRVGTVMRIRGVVPDQAGRFYVNLLCGEEPGSEAALHFNPRLDESSVVFNSLEHGAWGRE 476
+++G ++I+G + A F +NL G + + LHFNPR ES +V NS + G WG+E
Sbjct: 12 MKLGGTLKIKGKIAGDADGFVINLGQGSD---KLNLHFNPRFHESVIVCNSRD-GNWGQE 67
Query: 477 ERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTRVRAVEVGGDLQLELV 656
+R + F G + ++GFKV + D F +R+ + + + V G L++
Sbjct: 68 QRDKHMCFSPGSEVKFTVTFENDGFKVKLPDGHQLTFPNRLGHSHLSYLGVQGGLKVSSF 127
Query: 657 KI 662
KI
Sbjct: 128 KI 129
>ref|XP_547010.2| PREDICTED: similar to galectin-related inter-fiber protein [Canis
familiaris].
Length = 144
Score = 55.1 bits (131), Expect = 8e-08
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 4/136 (2%)
Frame = +3
Query: 264 SMPHKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCGEEPGSEAALHFNPRLDESSVVF 443
++ + A G+ G + ++G +F +N L + A H PR ++VV
Sbjct: 2 ALQFEAFCAGGLAPGWSLLVQGHSDSGEDKFEINFL---SEAGDIAFHLKPRFSSATVVG 58
Query: 444 NSLEHGAWGREERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPP----TR 611
N+ + G WG+EE P G+PF++ + + E F V + + F HR P TR
Sbjct: 59 NTFQGGRWGQEEVSSVFPLVLGEPFEMEVSSDAEHFHVHAQEHKVLQFAHRHRPLAAITR 118
Query: 612 VRAVEVGGDLQLELVK 659
V+ + Q+EL +
Sbjct: 119 VQVLSDHRLAQVELAR 134
>ref|NP_001188417.1| galectin-1 [Canis lupus familiaris].
Length = 135
Score = 53.1 bits (126), Expect = 3e-07
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 4/122 (3%)
Frame = +3
Query: 297 IRVGTVMRIRGVVPDQAGRFYVNLLCGEEPGSEAALHFNPRL----DESSVVFNSLEHGA 464
++ G +R++ V +A F +NL + G LHFNPR D +++V NS + GA
Sbjct: 12 LKPGQCLRVQCEVVPEAKSFVLNL---GKDGDNLCLHFNPRFEAHGDVNTIVCNSKDGGA 68
Query: 465 WGREERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTRVRAVEVGGDLQ 644
WG E R PFQ G +V + + + D F +R+ + + GD++
Sbjct: 69 WGEELRESAFPFQPGTVTEVCISFDQADLTIKLPDGYTFKFPNRLNLEAISYLAADGDMK 128
Query: 645 LE 650
++
Sbjct: 129 IK 130
>ref|XP_538509.2| PREDICTED: similar to Galectin-5 (RL-18) [Canis familiaris].
Length = 173
Score = 52.4 bits (124), Expect = 5e-07
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 4/122 (3%)
Frame = +3
Query: 294 GIRVGTVMRIRGVVPDQAGRFYVNLLCG--EEPGSEAALHFNPRLDESSVVFNSLEHGAW 467
G+R G + + G+V F ++L CG E+P ++ A+ + ++ NS G
Sbjct: 48 GMRPGKKVLVMGIVDLNPESFAISLTCGDSEDPPADVAIELKAVFTDRQLLRNSCISGER 107
Query: 468 GREERG-PGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPP-TRVRAVEVGGDL 641
G E+ P PF QPF V ++ F+V V + F HR+ + + +++ GDL
Sbjct: 108 GEEQSAIPYFPFIPDQPFRVEILCEHPRFRVFVDGHQLFDFYHRIQTLSAIDTIKINGDL 167
Query: 642 QL 647
Q+
Sbjct: 168 QI 169
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 27,140,687
Number of extensions: 701887
Number of successful extensions: 3822
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 3791
Number of HSP's successfully gapped: 17
Length of query: 270
Length of database: 18,874,504
Length adjustment: 101
Effective length of query: 169
Effective length of database: 15,507,568
Effective search space: 2620778992
Effective search space used: 2620778992
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014082
(810 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001136315.1| galectin-7 [Sus scrofa]. 285 2e-77
Alignment gi|NP_999146.1| galectin-4 [Sus scrofa]. 105 3e-23
Alignment gi|NP_001136316.1| galectin-12 [Sus scrofa]. 92 4e-19
Alignment gi|NP_999097.1| galectin-9 [Sus scrofa]. 83 2e-16
Alignment gi|NP_001136299.1| galectin-8 [Sus scrofa]. 75 3e-14
Alignment gi|NP_001090970.1| galectin-3 [Sus scrofa]. 71 6e-13
Alignment gi|NP_001136314.1| galectin-3 [Sus scrofa]. 70 1e-12
Alignment gi|NP_001001867.1| galectin-1 [Sus scrofa]. 57 2e-08
Alignment gi|NP_001138691.1| galectin-related inter-fiber protein [Sus sc... 56 3e-08
Alignment gi|XP_003355958.1| PREDICTED: eosinophil lysophospholipase-like... 56 3e-08
>ref|NP_001136315.1| galectin-7 [Sus scrofa].
Length = 138
Score = 285 bits (730), Expect = 2e-77
Identities = 138/138 (100%), Positives = 138/138 (100%)
Frame = +3
Query: 252 MSGFSMPHKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCGEEPGSEAALHFNPRLDES 431
MSGFSMPHKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCGEEPGSEAALHFNPRLDES
Sbjct: 1 MSGFSMPHKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCGEEPGSEAALHFNPRLDES 60
Query: 432 SVVFNSLEHGAWGREERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTR 611
SVVFNSLEHGAWGREERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTR
Sbjct: 61 SVVFNSLEHGAWGREERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTR 120
Query: 612 VRAVEVGGDLQLELVKIF 665
VRAVEVGGDLQLELVKIF
Sbjct: 121 VRAVEVGGDLQLELVKIF 138
>ref|NP_999146.1| galectin-4 [Sus scrofa].
Length = 323
Score = 105 bits (262), Expect = 3e-23
Identities = 53/147 (36%), Positives = 85/147 (57%), Gaps = 1/147 (0%)
Frame = +3
Query: 264 SMPHKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCGEEPGSEAALHFNPRLDE-SSVV 440
++P+ + G+RVG + I+GV + RF+VN + G+ PG++ A HFNPR D VV
Sbjct: 16 TLPYYKPIPGGLRVGMSVYIQGVANEHMKRFFVNFVVGQGPGADVAFHFNPRFDGWDKVV 75
Query: 441 FNSLEHGAWGREERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTRVRA 620
FNS + G WG EE+ +PF++ F+++++ E +KVVV ++ F HR+P V
Sbjct: 76 FNSQQDGKWGNEEKKRSMPFRKAPAFELVIMVLPEHYKVVVNGDPFYEFGHRIPVQLVTH 135
Query: 621 VEVGGDLQLELVKIF*ALAGGRVVGGP 701
++V GDL L+ + GG+ P
Sbjct: 136 LQVDGDLTLQSINFI----GGQPAPSP 158
Score = 77.8 bits (190), Expect = 7e-15
Identities = 54/157 (34%), Positives = 76/157 (48%), Gaps = 8/157 (5%)
Frame = +3
Query: 216 PPRHHCR-CHIPAMSGFS-----MPHKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCG 377
P +H+ + C++P M G +P+KT L G+ + I+G VP +N G
Sbjct: 169 PGKHNQQPCNLPCMEGAPTFNPPVPYKTRLQGGLVARRTIVIKGYVPPSGKSLVINFKVG 228
Query: 378 EEPGSEAALHFNPRLDESSVVFNSLEHGAWGREERGPGI-PFQRGQPFDVLLITTDEGFK 554
+ ALH NPRL E VV NS +G WG EER PF GQ FD+ + + FK
Sbjct: 229 SS--GDVALHINPRLTEGIVVRNSYLNGKWGAEERKSSFNPFAPGQYFDLSIRCGLDRFK 286
Query: 555 VVVGDLEYHHFRHRMPPTR-VRAVEVGGDLQLELVKI 662
V F HR+ + V +E+ GD+ L V+I
Sbjct: 287 VYANGQHLFDFSHRLSNFQGVDTLEIQGDVTLSYVQI 323
>ref|NP_001136316.1| galectin-12 [Sus scrofa].
Length = 314
Score = 91.7 bits (226), Expect = 4e-19
Identities = 49/134 (36%), Positives = 78/134 (58%), Gaps = 4/134 (2%)
Frame = +3
Query: 267 MPHKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCG--EEPGSEAALHFNPRLDESS-- 434
+P+ T + G+R G +++++GVVP A RF V+ CG P + A+HFNPR +
Sbjct: 25 VPYVTTIFGGLRAGKMVQLQGVVPLDARRFQVDFQCGCSLHPRPDIAIHFNPRFHTTKPH 84
Query: 435 VVFNSLEHGAWGREERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTRV 614
V+ N+L+ G W E R P + QRG F +L + +E KV V L + H+R+R+P +RV
Sbjct: 85 VICNTLQGGHWQAEARWPHLALQRGASFLILFLFGNEEMKVSVNGLHFLHYRYRLPLSRV 144
Query: 615 RAVEVGGDLQLELV 656
+ + GD+ + V
Sbjct: 145 DTLGIYGDILVTAV 158
>ref|NP_999097.1| galectin-9 [Sus scrofa].
Length = 349
Score = 82.8 bits (203), Expect = 2e-16
Identities = 48/132 (36%), Positives = 72/132 (54%), Gaps = 2/132 (1%)
Frame = +3
Query: 267 MPHKTLLADGIRVGTVMRIRGVVPDQAG-RFYVNLLCGEEPGSEAALHFNPRLDESS-VV 440
+P ++ G++ G + I G V +G RF VNL G ++ A HFNPR +E VV
Sbjct: 15 VPFTGMIQGGLQDGLQITINGTVLMSSGSRFTVNLQTGHSD-NDIAFHFNPRFEEGGYVV 73
Query: 441 FNSLEHGAWGREERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTRVRA 620
N+ ++G WG EER +PFQRG PF++ + F+V V + + HR+P RV
Sbjct: 74 CNTKQNGIWGPEERKMQMPFQRGHPFELSFLVQSSQFQVTVNGRLFVQYTHRVPFHRVDT 133
Query: 621 VEVGGDLQLELV 656
+ V G +QL +
Sbjct: 134 ISVTGIVQLSYI 145
Score = 71.2 bits (173), Expect = 6e-13
Identities = 54/174 (31%), Positives = 80/174 (45%), Gaps = 8/174 (4%)
Frame = +3
Query: 135 GRWVWKGVTVSQRGSHTLLLLKVPAAIPPRHHCRCHIPAMSG----FSMPHKTLLADGIR 302
GRW ++Q HT+ + P + IP M+ F +P + G+
Sbjct: 183 GRWPANSAPITQTVIHTV------QSTPGQMFPNPMIPPMAYPNPVFPIPFFASIPGGLY 236
Query: 303 VGTVMRIRGVVPDQAGRFYVNLLCGEEPGSEAALHFNPRLDESSVVFNSLEHGAWGREER 482
+ + G + A FY+NL GS+ A H NPR E++VV N+ +WG EER
Sbjct: 237 PSKSIMVSGTILPSAQSFYINL----RSGSDIAFHLNPRFKENAVVRNTQIGSSWGPEER 292
Query: 483 G--PGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMP--PTRVRAVEVG 632
G +PF RGQ F V ++ FKV V + HR+ PT + ++EVG
Sbjct: 293 GLPRKMPFSRGQSFLVWILCESHCFKVAVDGQHLFEYYHRLKHLPT-INSLEVG 345
>ref|NP_001136299.1| galectin-8 [Sus scrofa].
Length = 317
Score = 75.5 bits (184), Expect = 3e-14
Identities = 37/126 (29%), Positives = 74/126 (58%), Gaps = 3/126 (2%)
Frame = +3
Query: 267 MPHKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCGE--EPGSEAALHFNPRLDESS-V 437
+P+ +++ + GT++ +RG VP + RF V+L CG +P ++ A HFNPR ++ +
Sbjct: 17 IPYVGTISEQLEPGTLIVLRGHVPSDSDRFQVDLQCGNSVKPRADVAFHFNPRFKRANCI 76
Query: 438 VFNSLEHGAWGREERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTRVR 617
V N+L++ WG EE +PF++ + F+++++ + F+V V + HR+ P ++
Sbjct: 77 VCNTLKNEKWGWEEIVYDMPFKKEKSFEIVIMVLKDKFQVAVNGKHTLLYSHRISPEKIN 136
Query: 618 AVEVGG 635
+ + G
Sbjct: 137 TLGIYG 142
Score = 63.5 bits (153), Expect = 1e-10
Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 2/134 (1%)
Frame = +3
Query: 252 MSGFSMPHKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCGEEPGSEAALHFNPRLDES 431
+S F++P L + G + I+G V A F V+LL G+ + A H NPRL+
Sbjct: 180 VSQFTLPFVARLNSPMGPGRTIVIKGEVNTNAKGFNVDLLSGKS--KDIARHLNPRLNVK 237
Query: 432 SVVFNSLEHGAWGREERG-PGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPP- 605
+ V NS +WG EER PF G F++++ FKV + + ++HR
Sbjct: 238 AFVRNSFLQESWGEEERNITCFPFSPGMYFEMIIYCDVREFKVAINGVHSLEYKHRFREL 297
Query: 606 TRVRAVEVGGDLQL 647
+ + +E+ GD+ L
Sbjct: 298 SNIDTLEIDGDIHL 311
>ref|NP_001090970.1| galectin-3 [Sus scrofa].
Length = 260
Score = 71.2 bits (173), Expect = 6e-13
Identities = 42/132 (31%), Positives = 67/132 (50%), Gaps = 4/132 (3%)
Frame = +3
Query: 264 SMPHKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCGEEPGSEAALHFNPRLDESS--- 434
++P+ L G+ ++ I G V A R ++ + G++ A HFNPR +E +
Sbjct: 125 NVPYDLPLPGGVMPRMLITILGTVKPNANRLALDF----KKGNDVAFHFNPRFNEDNRRV 180
Query: 435 VVFNSLEHGAWGREERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTR- 611
+V NS WGREER PF+ G+PF + ++ + FKV V D + HRM R
Sbjct: 181 IVCNSKLDNNWGREERQMVFPFECGKPFKIQVLVEPDHFKVAVNDAHLLQYNHRMRNLRE 240
Query: 612 VRAVEVGGDLQL 647
+ + + GD+ L
Sbjct: 241 ISKLGISGDITL 252
>ref|NP_001136314.1| galectin-3 [Sus scrofa].
Length = 131
Score = 70.5 bits (171), Expect = 1e-12
Identities = 38/122 (31%), Positives = 67/122 (54%)
Frame = +3
Query: 297 IRVGTVMRIRGVVPDQAGRFYVNLLCGEEPGSEAALHFNPRLDESSVVFNSLEHGAWGRE 476
++VG ++I+G + D A F +NL G + + ALHFNPR ES++V NS + +WG+E
Sbjct: 12 MKVGKTLKIKGKIDDDADGFVINLGQGTD---KLALHFNPRFGESTIVCNSRDGNSWGKE 68
Query: 477 ERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTRVRAVEVGGDLQLELV 656
+R + F G +++ ++GFKV + D F +R+ + + + V G +
Sbjct: 69 QRDSHMCFSPGSEVKLIVTFEEDGFKVKLPDGHQLTFPNRLGYSHLSYLSVQGGFNITSF 128
Query: 657 KI 662
K+
Sbjct: 129 KL 130
>ref|NP_001001867.1| galectin-1 [Sus scrofa].
Length = 135
Score = 56.6 bits (135), Expect = 2e-08
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 4/124 (3%)
Frame = +3
Query: 297 IRVGTVMRIRGVVPDQAGRFYVNLLCGEEPGSEAALHFNPRLDE----SSVVFNSLEHGA 464
++ G +++RG V A F +NL + + LHFNPR D +++V NS + GA
Sbjct: 12 LKPGECLKVRGEVTPDAKSFVLNL---GKDSNNLCLHFNPRFDMHGDINTIVCNSKDGGA 68
Query: 465 WGREERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTRVRAVEVGGDLQ 644
WG E+R PFQ G +V + + + D F +R+ + + GD +
Sbjct: 69 WGAEQRESAFPFQPGSVVEVCISFGQTDLTIKLPDGCEFSFPNRLNLEAIEYLAADGDFK 128
Query: 645 LELV 656
++ V
Sbjct: 129 IKCV 132
>ref|NP_001138691.1| galectin-related inter-fiber protein [Sus scrofa].
Length = 144
Score = 55.8 bits (133), Expect = 3e-08
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 4/136 (2%)
Frame = +3
Query: 264 SMPHKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCGEEPGSEAALHFNPRLDESSVVF 443
++ + A G+ G + ++G +F +N L + H PR +S+V
Sbjct: 2 ALQFEAFYAGGLAPGWNLLVQGHSDSGEDKFEINFL---SEAGDIVFHIKPRFSSASIVA 58
Query: 444 NSLEHGAWGREERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPP----TR 611
N+ + G WG+EE P G+PF++ + + E F V + + F HR P TR
Sbjct: 59 NTFQGGRWGQEEVSTVFPLVLGEPFEMEVSSDAEHFHVHAQEHKVLQFAHRHRPLAAITR 118
Query: 612 VRAVEVGGDLQLELVK 659
V+ + Q+ELV+
Sbjct: 119 VQVLSDHRLAQVELVR 134
>ref|XP_003355958.1| PREDICTED: eosinophil lysophospholipase-like [Sus scrofa].
Length = 138
Score = 55.8 bits (133), Expect = 3e-08
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Frame = +3
Query: 303 VGTVMRIRG---VVPDQAGRFYVNLLCGEEPGSEAALHFNPRLDESSVVFNSLEHGAWGR 473
VG+ + IRG V + V+ + S+ A HF V NS ++G+W
Sbjct: 16 VGSSVTIRGKPAVCFSKNPEMQVDFHTEADGDSDIAFHFRVSFG-LYVRMNSRQNGSWNC 74
Query: 474 EERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTRVRAVEVGGDLQLEL 653
E + +PF GQPF++ ++ ++V+V Y+ F HR+ P V+ ++V D+ L
Sbjct: 75 EVKSSDMPFADGQPFELHILVLQNEYQVMVNGQHYYSFPHRLSPQSVKLMQVWRDVSLSS 134
Query: 654 V 656
V
Sbjct: 135 V 135
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 17,597,331
Number of extensions: 567553
Number of successful extensions: 2416
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 2394
Number of HSP's successfully gapped: 15
Length of query: 270
Length of database: 11,343,932
Length adjustment: 97
Effective length of query: 173
Effective length of database: 8,928,923
Effective search space: 1544703679
Effective search space used: 1544703679
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014082
(810 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032522.2| galectin-7 [Mus musculus]. 214 6e-56
Alignment gi|NP_034836.1| galectin-4 [Mus musculus]. 109 2e-24
Alignment gi|NP_034837.1| galectin-6 [Mus musculus]. 103 1e-22
Alignment gi|NP_062389.1| galectin-12 [Mus musculus]. 85 7e-17
Alignment gi|NP_001152773.1| galectin-9 isoform 2 [Mus musculus]. 80 1e-15
Alignment gi|NP_034838.2| galectin-9 isoform 1 [Mus musculus]. 80 1e-15
Alignment gi|NP_034835.1| galectin-3 [Mus musculus]. 74 2e-13
Alignment gi|NP_001139425.1| galectin-3 [Mus musculus]. 74 2e-13
Alignment gi|NP_001185972.1| galectin-8 [Mus musculus]. 70 1e-12
Alignment gi|NP_061374.1| galectin-8 [Mus musculus]. 70 1e-12
>ref|NP_032522.2| galectin-7 [Mus musculus].
Length = 136
Score = 214 bits (545), Expect = 6e-56
Identities = 102/131 (77%), Positives = 112/131 (85%)
Frame = +3
Query: 273 HKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCGEEPGSEAALHFNPRLDESSVVFNSL 452
HKT L G+RVGTVMRIRG+VPDQAGRF+VNLLCGEE G++AALHFNPRLD S VVFN+
Sbjct: 6 HKTSLPQGVRVGTVMRIRGMVPDQAGRFHVNLLCGEEQGADAALHFNPRLDTSEVVFNTK 65
Query: 453 EHGAWGREERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTRVRAVEVG 632
E G WGREERG GIPF+RGQPF+VLLI T+EGFK VVGD EY HF HRMPP RVR VEVG
Sbjct: 66 EQGKWGREERGTGIPFERGQPFEVLLIATEEGFKAVVGDDEYLHFHHRMPPARVRLVEVG 125
Query: 633 GDLQLELVKIF 665
GD+QL VKIF
Sbjct: 126 GDVQLHSVKIF 136
>ref|NP_034836.1| galectin-4 [Mus musculus].
Length = 326
Score = 109 bits (273), Expect = 2e-24
Identities = 51/147 (34%), Positives = 88/147 (59%), Gaps = 1/147 (0%)
Frame = +3
Query: 264 SMPHKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCGEEPGSEAALHFNPRLDE-SSVV 440
++P+K + G+ VG + I+G+ + RF+VN G++ G++ A HFNPR D VV
Sbjct: 16 TLPYKRPIPGGLSVGMSVYIQGMAKENMRRFHVNFAVGQDDGADVAFHFNPRFDGWDKVV 75
Query: 441 FNSLEHGAWGREERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTRVRA 620
FN+++ G WG+EE+ +PFQ+G+ F+++ + E +KVVV ++ + HR+P V
Sbjct: 76 FNTMQSGQWGKEEKKKSMPFQKGKHFELVFMVMPEHYKVVVNGNSFYEYGHRLPVQMVTH 135
Query: 621 VEVGGDLQLELVKIF*ALAGGRVVGGP 701
++V GDL+L+ + GG+ P
Sbjct: 136 LQVDGDLELQSINFL----GGQPAAAP 158
Score = 67.4 bits (163), Expect = 1e-11
Identities = 54/160 (33%), Positives = 78/160 (48%), Gaps = 7/160 (4%)
Frame = +3
Query: 204 PAAIPPRHHCRCHIPAMSG---FS--MPHKTLLADGIRVGTVMRIRGVVPDQAGRFYVNL 368
P PP+ + +P M+G F+ +P+ L G+ V + I+G V A F +N
Sbjct: 173 PGYNPPQMNT---LPVMTGPPVFNPRVPYVGALQGGLTVRRTIIIKGYVLPTARNFVINF 229
Query: 369 LCGEEPGSEAALHFNPRLDESSVVFNSLEHGAWGREERGPGI-PFQRGQPFDVLLITTDE 545
G + ALH NPR+ + SVV NS +G+WG EER PF GQ FD+ + +
Sbjct: 230 KVGSS--GDIALHLNPRIGD-SVVRNSFMNGSWGAEERKVAYNPFGPGQFFDLSIRCGMD 286
Query: 546 GFKVVVGDLEYHHFRHRMPPTR-VRAVEVGGDLQLELVKI 662
FKV F HR + V +E+ GD+ L V+I
Sbjct: 287 RFKVFANGQHLFDFSHRFQAFQMVDTLEINGDITLSYVQI 326
>ref|NP_034837.1| galectin-6 [Mus musculus].
Length = 301
Score = 103 bits (258), Expect = 1e-22
Identities = 49/135 (36%), Positives = 81/135 (60%), Gaps = 1/135 (0%)
Frame = +3
Query: 264 SMPHKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCGEEPGSEAALHFNPRLDE-SSVV 440
++P+K + G+ VG I+G + RF+VN G++ G++ A HFNPR D VV
Sbjct: 16 TLPYKRPIPGGLSVGMSFYIQGTAKENMRRFHVNFAVGQDDGADVAFHFNPRFDGWDKVV 75
Query: 441 FNSLEHGAWGREERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTRVRA 620
FN+ + G WG+EE +PFQ+G+ F+++ + E +KVVV ++ + HR+P V
Sbjct: 76 FNTKQSGRWGKEEE-KSMPFQKGKHFELVFMVMPEHYKVVVNGSPFYEYGHRLPVQMVTH 134
Query: 621 VEVGGDLQLELVKIF 665
++V GDL+L+ + F
Sbjct: 135 LQVDGDLELQSINFF 149
Score = 67.4 bits (163), Expect = 1e-11
Identities = 51/146 (34%), Positives = 72/146 (49%), Gaps = 7/146 (4%)
Frame = +3
Query: 246 PAMSG---FS--MPHKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCGEEPGSEAALHF 410
PAM+G F+ +P+ L G V + I+G V A F +N G + ALH
Sbjct: 159 PAMTGPPVFNPCLPYVGALQGGFTVRRTIIIKGYVLPTAKTFAINFRVGSS--EDIALHI 216
Query: 411 NPRLDESSVVFNSLEHGAWGREERGPGI-PFQRGQPFDVLLITTDEGFKVVVGDLEYHHF 587
NPR+ + +V NS +G+WG EER PF GQ FD+ + + FKV + +F
Sbjct: 217 NPRIGDC-LVRNSYMNGSWGTEERMVAYNPFGPGQFFDLSIRCGMDRFKVFANGIHLFNF 275
Query: 588 RHRMPPTR-VRAVEVGGDLQLELVKI 662
HR R + +E+ GDL L V I
Sbjct: 276 SHRFQALRKINTLEINGDLTLSYVHI 301
>ref|NP_062389.1| galectin-12 [Mus musculus].
Length = 314
Score = 84.7 bits (208), Expect = 7e-17
Identities = 45/134 (33%), Positives = 76/134 (56%), Gaps = 4/134 (2%)
Frame = +3
Query: 267 MPHKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCG--EEPGSEAALHFNPRLD--ESS 434
+P+ T + G+ G ++ ++GVVP A RF V+ CG P + A F+PR +
Sbjct: 25 IPYGTTIFGGLYAGKMVTLQGVVPLHARRFQVDFQCGCCLHPQPDVAFRFSPRFYTVKPH 84
Query: 435 VVFNSLEHGAWGREERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTRV 614
V+ N+ + G W +E R PG+ QRG F +L + +E KV V + H+R+R+P +RV
Sbjct: 85 VICNTHQGGLWQKEIRWPGVALQRGDSFLILFLFENEEVKVSVNGQHFLHYRYRLPLSRV 144
Query: 615 RAVEVGGDLQLELV 656
+++ GD+ ++ V
Sbjct: 145 DTLDISGDILVKAV 158
>ref|NP_001152773.1| galectin-9 isoform 2 [Mus musculus].
Length = 322
Score = 80.5 bits (197), Expect = 1e-15
Identities = 48/136 (35%), Positives = 74/136 (54%), Gaps = 3/136 (2%)
Frame = +3
Query: 261 FSMPHKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCGEEPGSEAALHFNPRLDESSVV 440
+++P T + +G+ + I G V A RF++NL CG + A H NPR +E++VV
Sbjct: 190 YTIPFYTPIPNGLYPSKSIMISGNVLPDATRFHINLRCG----GDIAFHLNPRFNENAVV 245
Query: 441 FNSLEHGAWGREERG--PGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTR- 611
N+ + +WG+EER +PF RGQ F V +I FKV V + HR+ +
Sbjct: 246 RNTQINNSWGQEERSLLGRMPFSRGQSFSVWIICEGHCFKVAVNGQHMCEYYHRLKNLQD 305
Query: 612 VRAVEVGGDLQLELVK 659
+ +EV GD+QL V+
Sbjct: 306 INTLEVAGDIQLTHVQ 321
Score = 79.7 bits (195), Expect = 2e-15
Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 1/131 (0%)
Frame = +3
Query: 267 MPHKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCGEEPGSEAALHFNPRLDESS-VVF 443
+P + G++ G + ++G A RF VN G++ A HFNPR +E VV
Sbjct: 15 IPFTGPIQGGLQEGLQVTLQGTTKSFAQRFVVNFQ-NSFNGNDIAFHFNPRFEEGGYVVC 73
Query: 444 NSLEHGAWGREERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTRVRAV 623
N+ ++G WG EER +PFQ+G PF++ + FKV+V + ++HR+P V +
Sbjct: 74 NTKQNGQWGPEERKMQMPFQKGMPFELCFLVQRSEFKVMVNKKFFVQYQHRVPYHLVDTI 133
Query: 624 EVGGDLQLELV 656
V G L+L +
Sbjct: 134 AVSGCLKLSFI 144
>ref|NP_034838.2| galectin-9 isoform 1 [Mus musculus].
Length = 353
Score = 80.5 bits (197), Expect = 1e-15
Identities = 48/136 (35%), Positives = 74/136 (54%), Gaps = 3/136 (2%)
Frame = +3
Query: 261 FSMPHKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCGEEPGSEAALHFNPRLDESSVV 440
+++P T + +G+ + I G V A RF++NL CG + A H NPR +E++VV
Sbjct: 221 YTIPFYTPIPNGLYPSKSIMISGNVLPDATRFHINLRCG----GDIAFHLNPRFNENAVV 276
Query: 441 FNSLEHGAWGREERG--PGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTR- 611
N+ + +WG+EER +PF RGQ F V +I FKV V + HR+ +
Sbjct: 277 RNTQINNSWGQEERSLLGRMPFSRGQSFSVWIICEGHCFKVAVNGQHMCEYYHRLKNLQD 336
Query: 612 VRAVEVGGDLQLELVK 659
+ +EV GD+QL V+
Sbjct: 337 INTLEVAGDIQLTHVQ 352
Score = 79.7 bits (195), Expect = 2e-15
Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 1/131 (0%)
Frame = +3
Query: 267 MPHKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCGEEPGSEAALHFNPRLDESS-VVF 443
+P + G++ G + ++G A RF VN G++ A HFNPR +E VV
Sbjct: 15 IPFTGPIQGGLQEGLQVTLQGTTKSFAQRFVVNFQ-NSFNGNDIAFHFNPRFEEGGYVVC 73
Query: 444 NSLEHGAWGREERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTRVRAV 623
N+ ++G WG EER +PFQ+G PF++ + FKV+V + ++HR+P V +
Sbjct: 74 NTKQNGQWGPEERKMQMPFQKGMPFELCFLVQRSEFKVMVNKKFFVQYQHRVPYHLVDTI 133
Query: 624 EVGGDLQLELV 656
V G L+L +
Sbjct: 134 AVSGCLKLSFI 144
>ref|NP_034835.1| galectin-3 [Mus musculus].
Length = 264
Score = 73.6 bits (179), Expect = 2e-13
Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 4/132 (3%)
Frame = +3
Query: 264 SMPHKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCGEEPGSEAALHFNPRLDESS--- 434
++P+ L G+ ++ I G V A R ++ G++ A HFNPR +E++
Sbjct: 129 TVPYDLPLPGGVMPRMLITIMGTVKPNANRIVLDF----RRGNDVAFHFNPRFNENNRRV 184
Query: 435 VVFNSLEHGAWGREERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTR- 611
+V N+ + WG+EER PF+ G+PF + ++ + FKV V D + HRM R
Sbjct: 185 IVCNTKQDNNWGKEERQSAFPFESGKPFKIQVLVEADHFKVAVNDAHLLQYNHRMKNLRE 244
Query: 612 VRAVEVGGDLQL 647
+ + + GD+ L
Sbjct: 245 ISQLGISGDITL 256
>ref|NP_001139425.1| galectin-3 [Mus musculus].
Length = 264
Score = 73.6 bits (179), Expect = 2e-13
Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 4/132 (3%)
Frame = +3
Query: 264 SMPHKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCGEEPGSEAALHFNPRLDESS--- 434
++P+ L G+ ++ I G V A R ++ G++ A HFNPR +E++
Sbjct: 129 TVPYDLPLPGGVMPRMLITIMGTVKPNANRIVLDF----RRGNDVAFHFNPRFNENNRRV 184
Query: 435 VVFNSLEHGAWGREERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTR- 611
+V N+ + WG+EER PF+ G+PF + ++ + FKV V D + HRM R
Sbjct: 185 IVCNTKQDNNWGKEERQSAFPFESGKPFKIQVLVEADHFKVAVNDAHLLQYNHRMKNLRE 244
Query: 612 VRAVEVGGDLQL 647
+ + + GD+ L
Sbjct: 245 ISQLGISGDITL 256
>ref|NP_001185972.1| galectin-8 [Mus musculus].
Length = 316
Score = 70.5 bits (171), Expect = 1e-12
Identities = 38/133 (28%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Frame = +3
Query: 267 MPHKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCGE--EPGSEAALHFNPRLDESS-V 437
+P+ + + ++ G+++ IRG VP + RF V+ G +P ++ A HFNPR SS +
Sbjct: 16 IPYVGTITEQLKPGSLIVIRGHVPKDSERFQVDFQLGNSLKPRADVAFHFNPRFKRSSCI 75
Query: 438 VFNSLEHGAWGREERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTRVR 617
V N+L WG EE +PF++ + F+++ + F+V V + HR+ P ++
Sbjct: 76 VCNTLTQEKWGWEEITYDMPFRKEKSFEIVFMVLKNKFQVAVNGRHVLLYAHRISPEQID 135
Query: 618 AVEVGGDLQLELV 656
V + G + + +
Sbjct: 136 TVGIYGKVNIHSI 148
Score = 65.1 bits (157), Expect = 6e-11
Identities = 42/136 (30%), Positives = 66/136 (48%), Gaps = 2/136 (1%)
Frame = +3
Query: 246 PAMSGFSMPHKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCGEEPGSEAALHFNPRLD 425
P S+P + L + G + I+G V A F V+L+ G+ + ALH NPRL+
Sbjct: 177 PGKLQLSLPFEARLNASMGPGRTVVIKGEVNTNARSFNVDLVAGKT--RDIALHLNPRLN 234
Query: 426 ESSVVFNSLEHGAWGREERG-PGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMP 602
+ V NS AWG EER PF G F++++ FKV + + ++HR
Sbjct: 235 VKAFVRNSFLQDAWGEEERNITCFPFSSGMYFEMIIYCDVREFKVAINGVHSLEYKHRFK 294
Query: 603 P-TRVRAVEVGGDLQL 647
+ + + V GD++L
Sbjct: 295 DLSSIDTLSVDGDIRL 310
>ref|NP_061374.1| galectin-8 [Mus musculus].
Length = 316
Score = 70.5 bits (171), Expect = 1e-12
Identities = 38/133 (28%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Frame = +3
Query: 267 MPHKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCGE--EPGSEAALHFNPRLDESS-V 437
+P+ + + ++ G+++ IRG VP + RF V+ G +P ++ A HFNPR SS +
Sbjct: 16 IPYVGTITEQLKPGSLIVIRGHVPKDSERFQVDFQLGNSLKPRADVAFHFNPRFKRSSCI 75
Query: 438 VFNSLEHGAWGREERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTRVR 617
V N+L WG EE +PF++ + F+++ + F+V V + HR+ P ++
Sbjct: 76 VCNTLTQEKWGWEEITYDMPFRKEKSFEIVFMVLKNKFQVAVNGRHVLLYAHRISPEQID 135
Query: 618 AVEVGGDLQLELV 656
V + G + + +
Sbjct: 136 TVGIYGKVNIHSI 148
Score = 65.1 bits (157), Expect = 6e-11
Identities = 42/136 (30%), Positives = 66/136 (48%), Gaps = 2/136 (1%)
Frame = +3
Query: 246 PAMSGFSMPHKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCGEEPGSEAALHFNPRLD 425
P S+P + L + G + I+G V A F V+L+ G+ + ALH NPRL+
Sbjct: 177 PGKLQLSLPFEARLNASMGPGRTVVIKGEVNTNARSFNVDLVAGKT--RDIALHLNPRLN 234
Query: 426 ESSVVFNSLEHGAWGREERG-PGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMP 602
+ V NS AWG EER PF G F++++ FKV + + ++HR
Sbjct: 235 VKAFVRNSFLQDAWGEEERNITCFPFSSGMYFEMIIYCDVREFKVAINGVHSLEYKHRFK 294
Query: 603 P-TRVRAVEVGGDLQL 647
+ + + V GD++L
Sbjct: 295 DLSSIDTLSVDGDIRL 310
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 22,242,587
Number of extensions: 563575
Number of successful extensions: 2790
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 2761
Number of HSP's successfully gapped: 20
Length of query: 270
Length of database: 15,617,559
Length adjustment: 100
Effective length of query: 170
Effective length of database: 12,613,959
Effective search space: 2144373030
Effective search space used: 2144373030
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014082
(810 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002298.1| galectin-7 [Homo sapiens]. 213 2e-55
Alignment gi|NP_001035972.1| galectin-7 [Homo sapiens]. 213 2e-55
Alignment gi|NP_006140.1| galectin-4 [Homo sapiens]. 113 2e-25
Alignment gi|NP_002299.2| galectin-9 isoform short [Homo sapiens]. 91 2e-18
Alignment gi|NP_033665.1| galectin-9 isoform long [Homo sapiens]. 89 5e-18
Alignment gi|NP_001136008.1| galectin-12 isoform 3 [Homo sapiens]. 87 1e-17
Alignment gi|NP_149092.2| galectin-12 isoform 2 [Homo sapiens]. 87 1e-17
Alignment gi|NP_001136007.1| galectin-12 isoform 1 [Homo sapiens]. 85 9e-17
Alignment gi|NP_001035167.2| galectin-9C [Homo sapiens]. 84 1e-16
Alignment gi|NP_001036150.1| galectin-9B [Homo sapiens]. 83 3e-16
>ref|NP_002298.1| galectin-7 [Homo sapiens].
Length = 136
Score = 213 bits (541), Expect = 2e-55
Identities = 97/134 (72%), Positives = 116/134 (86%)
Frame = +3
Query: 264 SMPHKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCGEEPGSEAALHFNPRLDESSVVF 443
++PHK+ L +GIR GTV+RIRG+VP A RF+VNLLCGEE GS+AALHFNPRLD S VVF
Sbjct: 3 NVPHKSSLPEGIRPGTVLRIRGLVPPNASRFHVNLLCGEEQGSDAALHFNPRLDTSEVVF 62
Query: 444 NSLEHGAWGREERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTRVRAV 623
NS E G+WGREERGPG+PFQRGQPF+VL+I +D+GFK VVGD +YHHFRHR+P RVR V
Sbjct: 63 NSKEQGSWGREERGPGVPFQRGQPFEVLIIASDDGFKAVVGDAQYHHFRHRLPLARVRLV 122
Query: 624 EVGGDLQLELVKIF 665
EVGGD+QL+ V+IF
Sbjct: 123 EVGGDVQLDSVRIF 136
>ref|NP_001035972.1| galectin-7 [Homo sapiens].
Length = 136
Score = 213 bits (541), Expect = 2e-55
Identities = 97/134 (72%), Positives = 116/134 (86%)
Frame = +3
Query: 264 SMPHKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCGEEPGSEAALHFNPRLDESSVVF 443
++PHK+ L +GIR GTV+RIRG+VP A RF+VNLLCGEE GS+AALHFNPRLD S VVF
Sbjct: 3 NVPHKSSLPEGIRPGTVLRIRGLVPPNASRFHVNLLCGEEQGSDAALHFNPRLDTSEVVF 62
Query: 444 NSLEHGAWGREERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTRVRAV 623
NS E G+WGREERGPG+PFQRGQPF+VL+I +D+GFK VVGD +YHHFRHR+P RVR V
Sbjct: 63 NSKEQGSWGREERGPGVPFQRGQPFEVLIIASDDGFKAVVGDAQYHHFRHRLPLARVRLV 122
Query: 624 EVGGDLQLELVKIF 665
EVGGD+QL+ V+IF
Sbjct: 123 EVGGDVQLDSVRIF 136
>ref|NP_006140.1| galectin-4 [Homo sapiens].
Length = 323
Score = 113 bits (282), Expect = 2e-25
Identities = 60/154 (38%), Positives = 93/154 (60%), Gaps = 1/154 (0%)
Frame = +3
Query: 264 SMPHKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCGEEPGSEAALHFNPRLDE-SSVV 440
++P+ + G+ VG + I+GV + RF+VN + G++PGS+ A HFNPR D VV
Sbjct: 16 TLPYYQPIPGGLNVGMSVYIQGVASEHMKRFFVNFVVGQDPGSDVAFHFNPRFDGWDKVV 75
Query: 441 FNSLEHGAWGREERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTRVRA 620
FN+L+ G WG EER +PF++G F+++ I E +KVVV ++ + HR+P V
Sbjct: 76 FNTLQGGKWGSEERKRSMPFKKGAAFELVFIVLAEHYKVVVNGNPFYEYGHRLPLQMVTH 135
Query: 621 VEVGGDLQLELVKIF*ALAGGRVVGGPQGSWPPI 722
++V GDLQL+ + GG+ + PQG PP+
Sbjct: 136 LQVDGDLQLQSINFI----GGQPL-RPQG--PPM 162
Score = 69.3 bits (168), Expect = 4e-12
Identities = 55/166 (33%), Positives = 78/166 (46%), Gaps = 13/166 (7%)
Frame = +3
Query: 204 PAAIPPRH---HCRCHI---PAMSG---FS--MPHKTLLADGIRVGTVMRIRGVVPDQAG 350
P +PP HC + P M G F+ +P+ L G+ + I+G VP
Sbjct: 160 PPMMPPYPGPGHCHQQLNSLPTMEGPPTFNPPVPYFGRLQGGLTARRTIIIKGYVPPTGK 219
Query: 351 RFYVNLLCGEEPGSEAALHFNPRLDESSVVFNSLEHGAWGREERG-PGIPFQRGQPFDVL 527
F +N G + ALH NPR+ +VV NSL +G+WG EE+ PF GQ FD+
Sbjct: 220 SFAINFKVGSS--GDIALHINPRMGNGTVVRNSLLNGSWGSEEKKITHNPFGPGQFFDLS 277
Query: 528 LITTDEGFKVVVGDLEYHHFRHRMPP-TRVRAVEVGGDLQLELVKI 662
+ + FKV F HR+ RV +E+ GD+ L V+I
Sbjct: 278 IRCGLDRFKVYANGQHLFDFAHRLSAFQRVDTLEIQGDVTLSYVQI 323
>ref|NP_002299.2| galectin-9 isoform short [Homo sapiens].
Length = 323
Score = 90.5 bits (223), Expect = 2e-18
Identities = 51/153 (33%), Positives = 79/153 (51%), Gaps = 2/153 (1%)
Frame = +3
Query: 264 SMPHKTLLADGIRVGTVMRIRGVVPDQAG-RFYVNLLCGEEPGSEAALHFNPRLDESS-V 437
++P + G++ G + + G V +G RF VN G G++ A HFNPR ++ V
Sbjct: 14 AVPFSGTIQGGLQDGLQITVNGTVLSSSGTRFAVNFQTGFS-GNDIAFHFNPRFEDGGYV 72
Query: 438 VFNSLEHGAWGREERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTRVR 617
V N+ ++G+WG EER +PFQ+G PFD+ + FKV+V + + + HR+P RV
Sbjct: 73 VCNTRQNGSWGPEERKTHMPFQKGMPFDLCFLVQSSDFKVMVNGILFVQYFHRVPFHRVD 132
Query: 618 AVEVGGDLQLELVKIF*ALAGGRVVGGPQGSWP 716
+ V G +QL + P G WP
Sbjct: 133 TISVNGSVQLSYISF-----------QPPGVWP 154
Score = 77.0 bits (188), Expect = 2e-14
Identities = 61/185 (32%), Positives = 87/185 (47%), Gaps = 10/185 (5%)
Frame = +3
Query: 135 GRWVWKGVTVSQRGSHTLL-----LLKVPAAIPPRHHCRCHIPAMSGFSMPHKTLLADGI 299
G W ++Q HT+ + PA IPP + PA + MP T + G+
Sbjct: 151 GVWPANPAPITQTVIHTVQSAPGQMFSTPA-IPPMMYPH---PA---YPMPFITTILGGL 203
Query: 300 RVGTVMRIRGVVPDQAGRFYVNLLCGEEPGSEAALHFNPRLDESSVVFNSLEHGAWGREE 479
+ + G V A RF++NL G + A H NPR DE++VV N+ +WG EE
Sbjct: 204 YPSKSILLSGTVLPSAQRFHINLCSG----NHIAFHLNPRFDENAVVRNTQIDNSWGSEE 259
Query: 480 RG--PGIPFQRGQPFDVLLITTDEGFKVVVGD---LEYHHFRHRMPPTRVRAVEVGGDLQ 644
R +PF RGQ F V ++ KV V EY+H +P + +EVGGD+Q
Sbjct: 260 RSLPRKMPFVRGQSFSVWILCEAHCLKVAVDGQHLFEYYHRLRNLP--TINRLEVGGDIQ 317
Query: 645 LELVK 659
L V+
Sbjct: 318 LTHVQ 322
>ref|NP_033665.1| galectin-9 isoform long [Homo sapiens].
Length = 355
Score = 89.0 bits (219), Expect = 5e-18
Identities = 47/133 (35%), Positives = 75/133 (56%), Gaps = 2/133 (1%)
Frame = +3
Query: 264 SMPHKTLLADGIRVGTVMRIRGVVPDQAG-RFYVNLLCGEEPGSEAALHFNPRLDESS-V 437
++P + G++ G + + G V +G RF VN G G++ A HFNPR ++ V
Sbjct: 14 AVPFSGTIQGGLQDGLQITVNGTVLSSSGTRFAVNFQTGFS-GNDIAFHFNPRFEDGGYV 72
Query: 438 VFNSLEHGAWGREERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTRVR 617
V N+ ++G+WG EER +PFQ+G PFD+ + FKV+V + + + HR+P RV
Sbjct: 73 VCNTRQNGSWGPEERKTHMPFQKGMPFDLCFLVQSSDFKVMVNGILFVQYFHRVPFHRVD 132
Query: 618 AVEVGGDLQLELV 656
+ V G +QL +
Sbjct: 133 TISVNGSVQLSYI 145
Score = 79.0 bits (193), Expect = 5e-15
Identities = 64/194 (32%), Positives = 90/194 (46%), Gaps = 10/194 (5%)
Frame = +3
Query: 108 PRARVCARYGRWVWKGVTVSQRGSHTLL-----LLKVPAAIPPRHHCRCHIPAMSGFSMP 272
PR R G W ++Q HT+ + PA IPP + PA + MP
Sbjct: 174 PRGRRQKPPGVWPANPAPITQTVIHTVQSAPGQMFSTPA-IPPMMYPH---PA---YPMP 226
Query: 273 HKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCGEEPGSEAALHFNPRLDESSVVFNSL 452
T + G+ + + G V A RF++NL G + A H NPR DE++VV N+
Sbjct: 227 FITTILGGLYPSKSILLSGTVLPSAQRFHINLCSG----NHIAFHLNPRFDENAVVRNTQ 282
Query: 453 EHGAWGREERG--PGIPFQRGQPFDVLLITTDEGFKVVVGD---LEYHHFRHRMPPTRVR 617
+WG EER +PF RGQ F V ++ KV V EY+H +P +
Sbjct: 283 IDNSWGSEERSLPRKMPFVRGQSFSVWILCEAHCLKVAVDGQHLFEYYHRLRNLP--TIN 340
Query: 618 AVEVGGDLQLELVK 659
+EVGGD+QL V+
Sbjct: 341 RLEVGGDIQLTHVQ 354
>ref|NP_001136008.1| galectin-12 isoform 3 [Homo sapiens].
Length = 327
Score = 87.4 bits (215), Expect = 1e-17
Identities = 48/134 (35%), Positives = 74/134 (55%), Gaps = 4/134 (2%)
Frame = +3
Query: 267 MPHKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCGEE--PGSEAALHFNPRLDESS-- 434
+P+ T + G+ G ++ ++GVVP A RF V+ CG P + A HFNPR +
Sbjct: 47 VPYVTTIFGGLHAGKMVMLQGVVPLDAHRFQVDFQCGCSLCPRPDIAFHFNPRFHTTKPH 106
Query: 435 VVFNSLEHGAWGREERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTRV 614
V+ N+L G W RE R P + +RG F +L + +E KV V + HFR+R+P + V
Sbjct: 107 VICNTLHGGRWQREARWPHLALRRGSSFLILFLFGNEEVKVSVNGQHFLHFRYRLPLSHV 166
Query: 615 RAVEVGGDLQLELV 656
+ + GD+ +E V
Sbjct: 167 DTLGIFGDILVEAV 180
>ref|NP_149092.2| galectin-12 isoform 2 [Homo sapiens].
Length = 336
Score = 87.4 bits (215), Expect = 1e-17
Identities = 48/134 (35%), Positives = 74/134 (55%), Gaps = 4/134 (2%)
Frame = +3
Query: 267 MPHKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCGEE--PGSEAALHFNPRLDESS-- 434
+P+ T + G+ G ++ ++GVVP A RF V+ CG P + A HFNPR +
Sbjct: 47 VPYVTTIFGGLHAGKMVMLQGVVPLDAHRFQVDFQCGCSLCPRPDIAFHFNPRFHTTKPH 106
Query: 435 VVFNSLEHGAWGREERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTRV 614
V+ N+L G W RE R P + +RG F +L + +E KV V + HFR+R+P + V
Sbjct: 107 VICNTLHGGRWQREARWPHLALRRGSSFLILFLFGNEEVKVSVNGQHFLHFRYRLPLSHV 166
Query: 615 RAVEVGGDLQLELV 656
+ + GD+ +E V
Sbjct: 167 DTLGIFGDILVEAV 180
>ref|NP_001136007.1| galectin-12 isoform 1 [Homo sapiens].
Length = 337
Score = 84.7 bits (208), Expect = 9e-17
Identities = 48/135 (35%), Positives = 74/135 (54%), Gaps = 5/135 (3%)
Frame = +3
Query: 267 MPHKTLLADGIRVGTVMRIRGVVP-DQAGRFYVNLLCGEE--PGSEAALHFNPRLDESS- 434
+P+ T + G+ G ++ ++GVVP D RF V+ CG P + A HFNPR +
Sbjct: 47 VPYVTTIFGGLHAGKMVMLQGVVPLDAHSRFQVDFQCGCSLCPRPDIAFHFNPRFHTTKP 106
Query: 435 -VVFNSLEHGAWGREERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTR 611
V+ N+L G W RE R P + +RG F +L + +E KV V + HFR+R+P +
Sbjct: 107 HVICNTLHGGRWQREARWPHLALRRGSSFLILFLFGNEEVKVSVNGQHFLHFRYRLPLSH 166
Query: 612 VRAVEVGGDLQLELV 656
V + + GD+ +E V
Sbjct: 167 VDTLGIFGDILVEAV 181
>ref|NP_001035167.2| galectin-9C [Homo sapiens].
Length = 356
Score = 84.3 bits (207), Expect = 1e-16
Identities = 49/142 (34%), Positives = 76/142 (53%), Gaps = 2/142 (1%)
Frame = +3
Query: 237 CHIPAMSGFSMPHKTLLADGIRVGTVMRIRGVVPDQAG-RFYVNLLCGEEPGSEAALHFN 413
C P +S ++P + G++ G + + G V +G RF V+ G G++ A HFN
Sbjct: 6 CQAPYLSP-AVPFSGTIQGGLQDGFQITVNGAVLSCSGTRFAVDFQTGFS-GNDIAFHFN 63
Query: 414 PRLDESS-VVFNSLEHGAWGREERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFR 590
PR ++ VV N+ + G WG EER +PFQ+G PFD+ + FKV+V + +
Sbjct: 64 PRFEDGGYVVCNTRQKGTWGPEERKMHMPFQKGMPFDLCFLVQSSDFKVMVNGSLFVQYF 123
Query: 591 HRMPPTRVRAVEVGGDLQLELV 656
HR+P RV + V G +QL +
Sbjct: 124 HRVPFHRVDTISVNGSVQLSYI 145
Score = 77.8 bits (190), Expect = 1e-14
Identities = 56/155 (36%), Positives = 78/155 (50%), Gaps = 5/155 (3%)
Frame = +3
Query: 210 AIPPRHHCRCHIPAMSGFSMPHKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCGEEPG 389
AIPP + PA + MP T + G+ + + G V A RF++NL G
Sbjct: 213 AIPPMMYPH---PA---YPMPFITTIPGGLYPSKSIILSGTVLPSAQRFHINLCSG---- 262
Query: 390 SEAALHFNPRLDESSVVFNSLEHGAWGREERG--PGIPFQRGQPFDVLLITTDEGFKVVV 563
S A H NPR DE++VV N+ + +WG EER +PF RGQ F V ++ KV V
Sbjct: 263 SHIAFHMNPRFDENAVVRNTQINNSWGSEERSLPRKMPFVRGQSFSVWILCEAHCLKVAV 322
Query: 564 GD---LEYHHFRHRMPPTRVRAVEVGGDLQLELVK 659
EY+H +P + +EVGGD+QL V+
Sbjct: 323 DGQHVFEYYHRLRNLP--TINKLEVGGDIQLTHVQ 355
>ref|NP_001036150.1| galectin-9B [Homo sapiens].
Length = 355
Score = 83.2 bits (204), Expect = 3e-16
Identities = 46/133 (34%), Positives = 72/133 (54%), Gaps = 2/133 (1%)
Frame = +3
Query: 264 SMPHKTLLADGIRVGTVMRIRGVVPDQAG-RFYVNLLCGEEPGSEAALHFNPRLDESS-V 437
++P + G++ G + + G V +G RF V+ G G++ A HFNPR ++ V
Sbjct: 14 AVPFSGTIQGGLQDGFQITVNGAVLSSSGTRFAVDFQTGFS-GNDIAFHFNPRFEDGGYV 72
Query: 438 VFNSLEHGAWGREERGPGIPFQRGQPFDVLLITTDEGFKVVVGDLEYHHFRHRMPPTRVR 617
V N+ + G WG EER +PFQ+G PFD+ + FKV+V + + HR+P RV
Sbjct: 73 VCNTRQKGRWGPEERKMHMPFQKGMPFDLCFLVQSSDFKVMVNGSLFVQYFHRVPFHRVD 132
Query: 618 AVEVGGDLQLELV 656
+ V G +QL +
Sbjct: 133 TISVNGSVQLSYI 145
Score = 77.8 bits (190), Expect = 1e-14
Identities = 56/155 (36%), Positives = 78/155 (50%), Gaps = 5/155 (3%)
Frame = +3
Query: 210 AIPPRHHCRCHIPAMSGFSMPHKTLLADGIRVGTVMRIRGVVPDQAGRFYVNLLCGEEPG 389
AIPP + PA + MP T + G+ + + G V A RF++NL G
Sbjct: 212 AIPPMMYPH---PA---YPMPFITTIPGGLYPSKSIILSGTVLPSAQRFHINLCSG---- 261
Query: 390 SEAALHFNPRLDESSVVFNSLEHGAWGREERG--PGIPFQRGQPFDVLLITTDEGFKVVV 563
S A H NPR DE++VV N+ + +WG EER +PF RGQ F V ++ KV V
Sbjct: 262 SHIAFHMNPRFDENAVVRNTQINNSWGSEERSLPRKMPFVRGQSFSVWILCEAHCLKVAV 321
Query: 564 GD---LEYHHFRHRMPPTRVRAVEVGGDLQLELVK 659
EY+H +P + +EVGGD+QL V+
Sbjct: 322 DGQHVFEYYHRLRNLP--TINKLEVGGDIQLTHVQ 354
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 26,495,306
Number of extensions: 678357
Number of successful extensions: 3627
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 3562
Number of HSP's successfully gapped: 35
Length of query: 270
Length of database: 18,297,164
Length adjustment: 101
Effective length of query: 169
Effective length of database: 14,967,800
Effective search space: 2529558200
Effective search space used: 2529558200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014082
(810 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 513 e-143
>Sscrofa_Chr06
|| Length = 157765593
Score = 513 bits (259), Expect = e-143
Identities = 262/263 (99%)
Strand = Plus / Plus
Query: 1 actgtccctgtccttcttagctcagagaagacacgcagcagccctgggaaccccagggcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43153359 actgtccctgtccttcttagctcagagaagacacgcagcagccctgggaaccccagggcc 43153418
Query: 61 tgcaggggcgtcagaggcctaggaagagggtgctgggccagcagggccccagggccaggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43153419 tgcaggggcgtcagaggcctaggaagagggtgctgggccagcagggccccagggccaggg 43153478
Query: 121 tctgtgccaggtatgggaggtgggtgtggaaaggggtgacggtgagtcaacggggcagcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43153479 tctgtgccaggtatgggaggtgggtgtggaaaggggtgacggtgagtcaacggggcagcc 43153538
Query: 181 acaccctgcttttacttaaggtcccagcagccatacccccgcgccaccactgccggtgcc 240
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 43153539 acaccctgcttttacttaaggtcccagcagccatacccccgctccaccactgccggtgcc 43153598
Query: 241 acatcccagccatgtcaggcttt 263
|||||||||||||||||||||||
Sbjct: 43153599 acatcccagccatgtcaggcttt 43153621
Score = 414 bits (209), Expect = e-113
Identities = 209/209 (100%)
Strand = Plus / Plus
Query: 350 caggttctacgtaaacctgctgtgcggcgaggagccgggcagcgaggccgccctgcattt 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43154749 caggttctacgtaaacctgctgtgcggcgaggagccgggcagcgaggccgccctgcattt 43154808
Query: 410 caacccgcggctggacgagtcctcggtggtcttcaacagcctggagcacggagcctgggg 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43154809 caacccgcggctggacgagtcctcggtggtcttcaacagcctggagcacggagcctgggg 43154868
Query: 470 ccgagaggagcgaggcccgggcattcccttccagcgcgggcagcccttcgacgtgctgct 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43154869 ccgagaggagcgaggcccgggcattcccttccagcgcgggcagcccttcgacgtgctgct 43154928
Query: 530 catcaccaccgacgaaggcttcaaggtgg 558
|||||||||||||||||||||||||||||
Sbjct: 43154929 catcaccaccgacgaaggcttcaaggtgg 43154957
Score = 325 bits (164), Expect = 2e-86
Identities = 178/185 (96%)
Strand = Plus / Plus
Query: 553 aggtggtggtcggggacctggagtaccaccacttccgccaccggatgccgccgacgcgcg 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43229826 aggtggtggtcggggacctggagtaccaccacttccgccaccggatgccgccgacgcgcg 43229885
Query: 613 tgcgtgcggtggaggtgggcggcgacctgcagctggagctcgtgaagatcttctgagccc 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43229886 tgcgtgcggtggaggtgggcggcgacctgcagctggagctcgtgaagatcttctgagccc 43229945
Query: 673 tggcnnnnnnncgcgtggtgggtgggccgcagggctcttggccgccaataaagtcttcgt 732
|||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43229946 tggcgggggggcgcgtggtgggtgggccgcagggctcttggccgccaataaagtcttcgt 43230005
Query: 733 ccgtc 737
|||||
Sbjct: 43230006 ccgtc 43230010
Score = 281 bits (142), Expect = 3e-73
Identities = 175/186 (94%), Gaps = 2/186 (1%)
Strand = Plus / Plus
Query: 553 aggtggtggtcggggacctggagtaccaccacttccgccaccggatgccgccgacgcgcg 612
|||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 43155554 aggtgggggtcggggacctggagtaccaccact-ccgccaccggatgccgcngacgcgcg 43155612
Query: 613 tgcgtgcggtggaggtgggcggcgacctgcagctggagctcgtgaagatcttctgagccc 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43155613 tgcgtgcggtggaggtgggcggcgacctgcagctggagctcgtgaagatcttctgagccc 43155672
Query: 673 tggc-nnnnnnncgcgtggtgggtgggccgcagggctcttggccgccaataaagtcttcg 731
|||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43155673 tggcggggggggcgcgtggtgggtgggccgcagggctcttggccgccaataaagtcttcg 43155732
Query: 732 tccgtc 737
||||||
Sbjct: 43155733 tccgtc 43155738
Score = 180 bits (91), Expect = 8e-43
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 264 tccatgccccacaaaaccttgctggccgacggcatccgagtcggcaccgtgatgagaatt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43153993 tccatgccccacaaaaccttgctggccgacggcatccgagtcggcaccgtgatgagaatt 43154052
Query: 324 cgtggtgttgtgcccgaccaggctggcaggt 354
|||||||||||||||||||||||||||||||
Sbjct: 43154053 cgtggtgttgtgcccgaccaggctggcaggt 43154083
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 17,748,632
Number of extensions: 133
Number of successful extensions: 133
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 6
Length of query: 810
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 789
Effective length of database: 2,808,413,156
Effective search space: 2215837980084
Effective search space used: 2215837980084
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)