Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014084
(992 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029378.1| sterol O-acyltransferase 1 [Bos taurus]. 80 4e-15
>ref|NP_001029378.1| sterol O-acyltransferase 1 [Bos taurus].
Length = 551
Score = 79.7 bits (195), Expect = 4e-15
Identities = 44/69 (63%), Positives = 55/69 (79%), Gaps = 1/69 (1%)
Frame = +1
Query: 217 MVGEE-MSLRKRLSKSSENAEGKEGDQRDRSEESLEPRSNGQINLKQLIAKKIQLTAEAE 393
+VGEE MS+RKRLSKSS +AE +E DQRD +EES E SNG+++LKQLI+KKI+LTAEAE
Sbjct: 2 VVGEEKMSVRKRLSKSSNHAEEEEEDQRDCAEESQEALSNGRVDLKQLISKKIKLTAEAE 61
Query: 394 VSNSLFQKQ 420
F K+
Sbjct: 62 ELKPFFMKE 70
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 24,336,472
Number of extensions: 810254
Number of successful extensions: 2181
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2165
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 227
Effective length of database: 14,273,310
Effective search space: 3240041370
Effective search space used: 3240041370
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-014084
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014084
(992 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_547445.2| PREDICTED: similar to Sterol O-acyltransferase ... 80 4e-15
>ref|XP_547445.2| PREDICTED: similar to Sterol O-acyltransferase 1 (Cholesterol
acyltransferase 1) (Acyl coenzyme A:cholesterol
acyltransferase 1) (ACAT-1) [Canis familiaris].
Length = 549
Score = 79.7 bits (195), Expect = 4e-15
Identities = 47/69 (68%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Frame = +1
Query: 217 MVGEEM-SLRKRLSKSSENAEGKEGDQRDRSEESLEPRSNGQINLKQLIAKKIQLTAEAE 393
MVGEE SLRKRLSKS EN+E KE DQR S+ESLE SNG+I++KQL+AKKIQLTAEAE
Sbjct: 1 MVGEEKTSLRKRLSKSRENSEEKE-DQRSPSKESLETPSNGRIDIKQLMAKKIQLTAEAE 59
Query: 394 VSNSLFQKQ 420
F K+
Sbjct: 60 ELKPFFMKE 68
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 23,953,609
Number of extensions: 570988
Number of successful extensions: 2337
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2334
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 227
Effective length of database: 15,440,896
Effective search space: 3505083392
Effective search space used: 3505083392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014084
(992 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003357604.1| PREDICTED: hypothetical protein LOC100628166... 117 1e-26
>ref|XP_003357604.1| PREDICTED: hypothetical protein LOC100628166 [Sus scrofa].
Length = 538
Score = 117 bits (293), Expect = 1e-26
Identities = 61/68 (89%), Positives = 62/68 (91%)
Frame = +1
Query: 217 MVGEEMSLRKRLSKSSENAEGKEGDQRDRSEESLEPRSNGQINLKQLIAKKIQLTAEAEV 396
MVGEEMSLRKRLSKSSENAEGKEGDQRDRSEESLEPRSNGQINLKQLIAKKIQLTAEAE
Sbjct: 1 MVGEEMSLRKRLSKSSENAEGKEGDQRDRSEESLEPRSNGQINLKQLIAKKIQLTAEAEE 60
Query: 397 SNSLFQKQ 420
F K+
Sbjct: 61 LKPFFMKE 68
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 17,991,324
Number of extensions: 924497
Number of successful extensions: 1395
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1393
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 231
Effective length of database: 8,879,129
Effective search space: 2051078799
Effective search space used: 2051078799
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014084
(992 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033256.2| sterol O-acyltransferase 1 [Mus musculus]. 51 1e-06
>ref|NP_033256.2| sterol O-acyltransferase 1 [Mus musculus].
Length = 540
Score = 51.2 bits (121), Expect = 1e-06
Identities = 31/63 (49%), Positives = 37/63 (58%)
Frame = +1
Query: 232 MSLRKRLSKSSENAEGKEGDQRDRSEESLEPRSNGQINLKQLIAKKIQLTAEAEVSNSLF 411
MSLR RLSKS EN E Q + + ++ NG I +KQLIAKK L AEAE LF
Sbjct: 1 MSLRNRLSKSGENPE-----QDEAQKNFMDTYRNGHITMKQLIAKKRLLAAEAEELKPLF 55
Query: 412 QKQ 420
K+
Sbjct: 56 MKE 58
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 20,170,803
Number of extensions: 473464
Number of successful extensions: 1942
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1920
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 228
Effective length of database: 12,553,887
Effective search space: 2862286236
Effective search space used: 2862286236
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014084
(992 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003092.4| sterol O-acyltransferase 1 [Homo sapiens]. 76 5e-14
>ref|NP_003092.4| sterol O-acyltransferase 1 [Homo sapiens].
Length = 550
Score = 75.9 bits (185), Expect = 5e-14
Identities = 45/69 (65%), Positives = 53/69 (76%), Gaps = 1/69 (1%)
Frame = +1
Query: 217 MVGEE-MSLRKRLSKSSENAEGKEGDQRDRSEESLEPRSNGQINLKQLIAKKIQLTAEAE 393
MVGEE MSLR RLSKS EN E E DQR+ ++ESLE SNG+I++KQLIAKKI+LTAEAE
Sbjct: 1 MVGEEKMSLRNRLSKSRENPEEDE-DQRNPAKESLETPSNGRIDIKQLIAKKIKLTAEAE 59
Query: 394 VSNSLFQKQ 420
F K+
Sbjct: 60 ELKPFFMKE 68
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 23,520,067
Number of extensions: 544595
Number of successful extensions: 2117
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2110
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 227
Effective length of database: 14,901,872
Effective search space: 3382724944
Effective search space used: 3382724944
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014084
(992 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 496 e-137
>Sscrofa_Chr09
|| Length = 153670197
Score = 496 bits (250), Expect = e-137
Identities = 250/250 (100%)
Strand = Plus / Minus
Query: 743 tattcagtacagtttttagtggtatattatttaaaagatgatttaccttttttatcagtt 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132933611 tattcagtacagtttttagtggtatattatttaaaagatgatttaccttttttatcagtt 132933552
Query: 803 gatattaccttactatggaacaggaaaataaggtctgctgtcttgtcaccctacataaga 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132933551 gatattaccttactatggaacaggaaaataaggtctgctgtcttgtcaccctacataaga 132933492
Query: 863 actagattgttttcttctgtgctgtcatccatcactcattttctggctttttccagtaaa 922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132933491 actagattgttttcttctgtgctgtcatccatcactcattttctggctttttccagtaaa 132933432
Query: 923 actcggttttagtgaacatgatacagttgaatgcctgtgtaggtgccttatgaaagtatc 982
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132933431 actcggttttagtgaacatgatacagttgaatgcctgtgtaggtgccttatgaaagtatc 132933372
Query: 983 tgtcatgatt 992
||||||||||
Sbjct: 132933371 tgtcatgatt 132933362
Score = 396 bits (200), Expect = e-108
Identities = 206/208 (99%)
Strand = Plus / Plus
Query: 1 gtgcgcgttacgctgcgtagcgggctgcgaggctgggggcggaggggctggtgagttgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132840420 gtgcgcgttacgctgcgtagcgggctgcgaggctgggggcggaggggctggtgagttgga 132840479
Query: 61 agcttattcttcgtctgcggttggttgcgttgccggcctggggcagccggagttcggctg 120
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132840480 cgcttattcttggtctgcggttggttgcgttgccggcctggggcagccggagttcggctg 132840539
Query: 121 cgaactgaccttcctgcaacccacgctgtgacggtttcccggctttgctctccttgctca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132840540 cgaactgaccttcctgcaacccacgctgtgacggtttcccggctttgctctccttgctca 132840599
Query: 181 ggtccctgttgtcgggctccggccccag 208
||||||||||||||||||||||||||||
Sbjct: 132840600 ggtccctgttgtcgggctccggccccag 132840627
Score = 278 bits (140), Expect = 6e-72
Identities = 140/140 (100%)
Strand = Plus / Minus
Query: 334 ggtcagattaatttaaaacagttgatagcaaagaagatacaattgacagcagaggcagag 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132934020 ggtcagattaatttaaaacagttgatagcaaagaagatacaattgacagcagaggcagag 132933961
Query: 394 gtaagtaactcccttttccagaaacaaaagtatagaattgtaaaggaaagagtttcattc 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132933960 gtaagtaactcccttttccagaaacaaaagtatagaattgtaaaggaaagagtttcattc 132933901
Query: 454 agtacagtttttgtttttta 473
||||||||||||||||||||
Sbjct: 132933900 agtacagtttttgtttttta 132933881
Score = 258 bits (130), Expect = 5e-66
Identities = 130/130 (100%)
Strand = Plus / Minus
Query: 207 agacaccacgatggtgggcgaagaaatgtctctgagaaaacgcctgtcaaagtccagcga 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132952008 agacaccacgatggtgggcgaagaaatgtctctgagaaaacgcctgtcaaagtccagcga 132951949
Query: 267 aaatgctgagggaaaggaaggcgaccaaagagaccgttcagaggagtccctagagccccg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132951948 aaatgctgagggaaaggaaggcgaccaaagagaccgttcagaggagtccctagagccccg 132951889
Query: 327 cagcaacggt 336
||||||||||
Sbjct: 132951888 cagcaacggt 132951879
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,072,828
Number of extensions: 201
Number of successful extensions: 201
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 4
Length of query: 992
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 971
Effective length of database: 2,808,413,156
Effective search space: 2726969174476
Effective search space used: 2726969174476
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)