Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014086
(1026 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001002950.2| toll-like receptor 4 [Canis lupus familiaris]. 298 7e-81
Alignment gi|NP_001005264.2| toll-like receptor 2 precursor [Canis lupus ... 101 1e-21
Alignment gi|NP_001139615.1| toll-like receptor 1 [Canis lupus familiaris]. 85 1e-16
Alignment gi|NP_001166598.1| toll-like receptor 10 [Canis lupus familiari... 74 2e-13
Alignment gi|XP_548819.2| PREDICTED: similar to toll-like receptor 2 [Can... 67 2e-11
Alignment gi|NP_001184105.1| toll-like receptor 5 [Canis lupus familiaris]. 67 4e-11
Alignment gi|NP_001041589.1| toll-like receptor 7 [Canis lupus familiaris]. 55 1e-07
Alignment gi|XP_544362.2| PREDICTED: similar to CD180 antigen precursor (... 51 2e-06
>ref|NP_001002950.2| toll-like receptor 4 [Canis lupus familiaris].
Length = 833
Score = 298 bits (762), Expect = 7e-81
Identities = 143/152 (94%), Positives = 148/152 (97%)
Frame = +2
Query: 473 SSQDEDWVRNELVKNLEEGVPPFHLCLHYRDFIPGVAIAANIIQEGFHKSRKVIVVVSQH 652
SSQDEDWVRNELVKNLEEGVPPF LCLHYRDFIPGVAIAANIIQEGF+KSRKVIVVVSQH
Sbjct: 682 SSQDEDWVRNELVKNLEEGVPPFQLCLHYRDFIPGVAIAANIIQEGFYKSRKVIVVVSQH 741
Query: 653 FIQSRWCIFEYEIAQTWQFLRSHAGIIFIVLQKLEKSLLRQQVELYRLLSRNTYLEWEDS 832
FIQSRWCIFEYEIAQTWQFL S AGIIFIVLQK+EKSLLRQQVELYRLLSRNTYLEWEDS
Sbjct: 742 FIQSRWCIFEYEIAQTWQFLSSRAGIIFIVLQKVEKSLLRQQVELYRLLSRNTYLEWEDS 801
Query: 833 VLGRHIFWRRLKKALLDGKPWSPEGTEDSEST 928
VLGRHIFWRRL+KALLDGKPWSPEGTED+E +
Sbjct: 802 VLGRHIFWRRLRKALLDGKPWSPEGTEDAEKS 833
Score = 121 bits (304), Expect = 9e-28
Identities = 61/101 (60%), Positives = 74/101 (73%)
Frame = +2
Query: 218 MIPRIRLAVATIPAMAFLSCLRSESWDPCVQVVPNISYQCMELNFYKIPDNIPTSVKILD 397
M+ RL IPAMAFLSCLR ESWDPC+QVV N +YQCMELN KIP+NIPTS + LD
Sbjct: 1 MMSPTRLVGILIPAMAFLSCLRPESWDPCMQVVANTTYQCMELNLSKIPNNIPTSTEKLD 60
Query: 398 LSFNYLSHLDSNSFSSFPELQVLDLSSQDEDWVRNELVKNL 520
LSFN L HL S+ FS+FP+LQVLDLS + + ++ + L
Sbjct: 61 LSFNPLRHLGSHCFSNFPKLQVLDLSRCEIQVIEDDAYQGL 101
>ref|NP_001005264.2| toll-like receptor 2 precursor [Canis lupus familiaris].
Length = 785
Score = 101 bits (251), Expect = 1e-21
Identities = 54/136 (39%), Positives = 79/136 (58%), Gaps = 1/136 (0%)
Frame = +2
Query: 473 SSQDEDWVRNELVKNLEEGVPPFHLCLHYRDFIPGVAIAANIIQEGFHKSRKVIVVVSQH 652
S D WV N LV+ LE PPF LCLH RDFIPG I NII + KS K I V+S++
Sbjct: 649 SEHDSYWVENLLVQKLEHFNPPFKLCLHKRDFIPGKWIIDNII-DSIEKSHKTIFVLSEN 707
Query: 653 FIQSRWCIFEYEIAQTWQFLRSHAGIIFIVLQKLEKSLLRQQ-VELYRLLSRNTYLEWED 829
F++S WC +E + + F ++ I I+L+ +EK + Q+ +L ++++ TYLEW
Sbjct: 708 FVKSEWCKYELDFSHFRLFDENNDAAILILLEPIEKKAIPQRFCKLRKIMNTKTYLEWPT 767
Query: 830 SVLGRHIFWRRLKKAL 877
+ FW L+ A+
Sbjct: 768 DDAQQEGFWLNLRTAI 783
>ref|NP_001139615.1| toll-like receptor 1 [Canis lupus familiaris].
Length = 789
Score = 85.1 bits (209), Expect = 1e-16
Identities = 49/139 (35%), Positives = 75/139 (53%), Gaps = 1/139 (0%)
Frame = +2
Query: 464 LDLSSQDEDWVRNELVKNLEEGVPPFHLCLHYRDFIPGVAIAANIIQEGFHKSRKVIVVV 643
+ S D WV++EL+ NLE+ +CLH R+FIPG +I NII KS K I V+
Sbjct: 644 ISYSGHDSAWVKSELLPNLEK--EELRICLHERNFIPGKSIVENIIN-CIEKSYKSIFVL 700
Query: 644 SQHFIQSRWCIFEYEIAQTWQFLRSHAGIIFIVLQKL-EKSLLRQQVELYRLLSRNTYLE 820
S +F+QS WC +E A F +I I+L+ + + S+ +L L+++ TYLE
Sbjct: 701 SPNFVQSEWCHYELYFAHHNLFHEGSNNLILILLEPIPQYSIPSSYHKLKNLMAQRTYLE 760
Query: 821 WEDSVLGRHIFWRRLKKAL 877
W +FW L+ ++
Sbjct: 761 WPKEKSKHGLFWANLRASI 779
>ref|NP_001166598.1| toll-like receptor 10 [Canis lupus familiaris].
Length = 807
Score = 73.9 bits (180), Expect = 2e-13
Identities = 47/136 (34%), Positives = 71/136 (52%), Gaps = 1/136 (0%)
Frame = +2
Query: 473 SSQDEDWVRNELVKNLEEGVPPFHLCLHYRDFIPGVAIAANIIQEGFHKSRKVIVVVSQH 652
S D WV++EL+ NLE+ +CLH +F PG +I NI+ KS K I V+S +
Sbjct: 639 SEHDSTWVKHELIPNLEKKEKL--ICLHEGNFDPGKSIIENIMN-CIEKSYKSIFVLSPN 695
Query: 653 FIQSRWCIFEYEIAQTWQFLRSHAGIIFIVLQKLEKSLL-RQQVELYRLLSRNTYLEWED 829
F+QS WC +E A F + IIFI+L+ + + + +L L+ + YLEW
Sbjct: 696 FVQSEWCHYELYFAHHSLFHENSDYIIFILLEPIPLYCIPTKYPKLKALMEKKAYLEWPK 755
Query: 830 SVLGRHIFWRRLKKAL 877
+FW L+ A+
Sbjct: 756 DRRICGLFWANLRAAI 771
>ref|XP_548819.2| PREDICTED: similar to toll-like receptor 2 [Canis familiaris].
Length = 409
Score = 67.4 bits (163), Expect = 2e-11
Identities = 44/120 (36%), Positives = 68/120 (56%)
Frame = +2
Query: 473 SSQDEDWVRNELVKNLEEGVPPFHLCLHYRDFIPGVAIAANIIQEGFHKSRKVIVVVSQH 652
SS+D W L+ LE +P +CLH RDF+PG I N+ E +S+KV++++SQ
Sbjct: 30 SSRDAAWTHT-LIGRLEADLPGLRVCLHERDFVPGRNILENMA-ECIQQSQKVLLLLSQD 87
Query: 653 FIQSRWCIFEYEIAQTWQFLRSHAGIIFIVLQKLEKSLLRQQVELYRLLSRNTYLEWEDS 832
F+QSRWC+ E +++ + + +I I+L+ +V L+ LS TYLE DS
Sbjct: 88 FVQSRWCLLEADLS-LFGYCLERKAVIPILLKPC-------RVPLH--LSHLTYLEATDS 137
>ref|NP_001184105.1| toll-like receptor 5 [Canis lupus familiaris].
Length = 858
Score = 66.6 bits (161), Expect = 4e-11
Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 12/141 (8%)
Frame = +2
Query: 464 LDLSSQDEDWVRNELVKNLEEGVPP---FHLCLHYRDFIPGVAIAANIIQEGFHKSRKVI 634
L S +D +WV+ L+++L+ +LC RDF+PG ANI Q+ SRKV+
Sbjct: 697 LCFSGRDFEWVQRALLRHLDAQYSSRNRLNLCFEERDFVPGREHIANI-QDAVWSSRKVV 755
Query: 635 VVVSQHFIQSRWCIFEYEIAQTWQFLRSHAGIIFIVLQKLEKSLLRQQVELYRLLSRNTY 814
+VS+HF++ WC+ + A++ ++ +V+ L + LR+ + + + Y
Sbjct: 756 CLVSRHFLRDGWCLEAFAAARSRCASHLDGALVLVVVGSLSQYQLRRHPAIGGFVRQRRY 815
Query: 815 LEWEDSV---------LGRHI 850
L W + + L RHI
Sbjct: 816 LRWPEDLQDVGWFLDTLSRHI 836
>ref|NP_001041589.1| toll-like receptor 7 [Canis lupus familiaris].
Length = 1050
Score = 55.1 bits (131), Expect = 1e-07
Identities = 42/137 (30%), Positives = 72/137 (52%), Gaps = 7/137 (5%)
Frame = +2
Query: 488 DWVRNELVKNLEEGVPP-FHLCLHYRDFIPGVAIAANIIQEGFHKSRKVIVVVSQHFIQS 664
+WV +ELV LE+ F+LCL RD++PG + N+ Q S+K + V++ + ++
Sbjct: 907 EWVLDELVAKLEDPREKHFNLCLEERDWLPGQPVLENLSQ-SIQLSKKTVFVMTNKYAKT 965
Query: 665 RWCIFEYEIAQTWQFLRSHAGII-----FIVLQKLEKSLLRQQ-VELYRLLSRNTYLEWE 826
++IA F SH ++ I+L LEK L + + ++L + L +++ LEW
Sbjct: 966 E----NFKIA----FYLSHQRLMDEKVDVIILIFLEKPLQKSKFLQLRKRLCKSSVLEWP 1017
Query: 827 DSVLGRHIFWRRLKKAL 877
+ FW+ LK AL
Sbjct: 1018 RNPQAHPYFWQCLKNAL 1034
>ref|XP_544362.2| PREDICTED: similar to CD180 antigen precursor (Lymphocyte antigen
64) (Radioprotective 105 kDa protein) [Canis
familiaris].
Length = 661
Score = 51.2 bits (121), Expect = 2e-06
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +2
Query: 272 SCLRSESWDP-CVQVVPNISYQCMELNFYKIPDNIPTSVKILDLSFNYLSHLDSNSFSSF 448
SC S D C + N +Y C L ++PD +P + + L+ FN+L +++ +FS
Sbjct: 17 SCKAITSSDQMCTEKEANKTYNCENLGLTEVPDTLPNTTEFLEFGFNFLPTVENTTFSRL 76
Query: 449 PELQVLDLSSQDEDWVRNELVKN 517
+L LDL+ +WV + +N
Sbjct: 77 IDLIFLDLTRCQINWVHEDTFQN 99
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,863,092
Number of extensions: 1055028
Number of successful extensions: 3557
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3539
Number of HSP's successfully gapped: 9
Length of query: 342
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 239
Effective length of database: 15,440,896
Effective search space: 3690374144
Effective search space used: 3690374144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-014086
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014086
(1026 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776623.5| toll-like receptor 4 precursor [Bos taurus]. 294 1e-79
Alignment gi|NP_776622.1| toll-like receptor 2 precursor [Bos taurus]. 99 5e-21
Alignment gi|NP_001001159.1| toll-like receptor 6 [Bos taurus]. 83 3e-16
Alignment gi|NP_001039969.1| toll-like receptor 1 [Bos taurus]. 83 3e-16
Alignment gi|NP_001035591.1| toll-like receptor 5 [Bos taurus]. 75 7e-14
Alignment gi|NP_001070386.1| toll-like receptor 10 precursor [Bos taurus]. 66 6e-11
Alignment gi|NP_001029109.1| toll-like receptor 8 [Bos taurus]. 57 2e-08
Alignment gi|NP_001028933.1| toll-like receptor 7 [Bos taurus]. 54 2e-07
Alignment gi|NP_001069636.1| CD180 antigen [Bos taurus]. 52 6e-07
>ref|NP_776623.5| toll-like receptor 4 precursor [Bos taurus].
Length = 841
Score = 294 bits (752), Expect = 1e-79
Identities = 143/160 (89%), Positives = 148/160 (92%)
Frame = +2
Query: 473 SSQDEDWVRNELVKNLEEGVPPFHLCLHYRDFIPGVAIAANIIQEGFHKSRKVIVVVSQH 652
SSQDEDWVRNELVKNLEEGVPPF LCLHYRDFIPGVAIAANIIQEGFHKSRKVIVVVSQH
Sbjct: 682 SSQDEDWVRNELVKNLEEGVPPFQLCLHYRDFIPGVAIAANIIQEGFHKSRKVIVVVSQH 741
Query: 653 FIQSRWCIFEYEIAQTWQFLRSHAGIIFIVLQKLEKSLLRQQVELYRLLSRNTYLEWEDS 832
FIQSRWCIFEYEIAQTWQFL S AGIIFIVLQKLEKSLLRQQVELYRLLSRNTYLEWEDS
Sbjct: 742 FIQSRWCIFEYEIAQTWQFLSSRAGIIFIVLQKLEKSLLRQQVELYRLLSRNTYLEWEDS 801
Query: 833 VLGRHIFWRRLKKALLDGKPWSPEGTEDSESTQHDTTAFT 952
VLGRH+FWRRL+KALL GKP SPEGT D+E+ + T T
Sbjct: 802 VLGRHVFWRRLRKALLAGKPQSPEGTADAETNPQEATTST 841
Score = 145 bits (366), Expect = 6e-35
Identities = 70/86 (81%), Positives = 75/86 (87%)
Frame = +2
Query: 218 MIPRIRLAVATIPAMAFLSCLRSESWDPCVQVVPNISYQCMELNFYKIPDNIPTSVKILD 397
M+ R RLA A IPA A LSCLR+ESWDPCVQVVPNISYQCMELN YKIPDNIP S K+LD
Sbjct: 1 MMARARLAAALIPATAILSCLRTESWDPCVQVVPNISYQCMELNLYKIPDNIPISTKMLD 60
Query: 398 LSFNYLSHLDSNSFSSFPELQVLDLS 475
LSFNYL HL S++FSSFPELQVLDLS
Sbjct: 61 LSFNYLRHLGSHNFSSFPELQVLDLS 86
>ref|NP_776622.1| toll-like receptor 2 precursor [Bos taurus].
Length = 784
Score = 99.4 bits (246), Expect = 5e-21
Identities = 52/136 (38%), Positives = 80/136 (58%), Gaps = 1/136 (0%)
Frame = +2
Query: 473 SSQDEDWVRNELVKNLEEGVPPFHLCLHYRDFIPGVAIAANIIQEGFHKSRKVIVVVSQH 652
S +D WV N +V+ LE PPF LCLH RDFIPG I NII + KS K I V+S++
Sbjct: 648 SERDSYWVENLMVQELEHFNPPFKLCLHKRDFIPGKWIIDNII-DSIEKSHKTIFVLSEN 706
Query: 653 FIQSRWCIFEYEIAQTWQFLRSHAGIIFIVLQKLEKSLLRQQ-VELYRLLSRNTYLEWED 829
F++S WC +E + + F ++ I I+L+ ++K + Q+ +L ++++ TYLEW
Sbjct: 707 FVKSEWCKYELDFSHFRLFDENNDAAILILLEPIDKKAIPQRFCKLRKIMNTKTYLEWPV 766
Query: 830 SVLGRHIFWRRLKKAL 877
+ FW L+ A+
Sbjct: 767 DETQQEGFWLNLRAAI 782
>ref|NP_001001159.1| toll-like receptor 6 [Bos taurus].
Length = 793
Score = 83.2 bits (204), Expect = 3e-16
Identities = 48/139 (34%), Positives = 73/139 (52%), Gaps = 1/139 (0%)
Frame = +2
Query: 464 LDLSSQDEDWVRNELVKNLEEGVPPFHLCLHYRDFIPGVAIAANIIQEGFHKSRKVIVVV 643
+ S D WV+NEL+ NLE+ +CLH R+F+ G +I NII KS K I V+
Sbjct: 646 ISYSEHDSAWVKNELIPNLEK--EDIRICLHERNFVAGKSIVENIIN-CIEKSYKSIFVL 702
Query: 644 SQHFIQSRWCIFEYEIAQTWQFLRSHAGIIFIVLQKL-EKSLLRQQVELYRLLSRNTYLE 820
S +F+QS WC +E A F +I I+L + + S+ +L L+++ TYLE
Sbjct: 703 SPNFVQSEWCHYELYFAHHNLFHEGSDNLILILLDPIPQYSIPSSYHKLRALMAQRTYLE 762
Query: 821 WEDSVLGRHIFWRRLKKAL 877
W +FW L+ ++
Sbjct: 763 WPKEKSKHGLFWANLRASI 781
>ref|NP_001039969.1| toll-like receptor 1 [Bos taurus].
Length = 727
Score = 83.2 bits (204), Expect = 3e-16
Identities = 48/139 (34%), Positives = 73/139 (52%), Gaps = 1/139 (0%)
Frame = +2
Query: 464 LDLSSQDEDWVRNELVKNLEEGVPPFHLCLHYRDFIPGVAIAANIIQEGFHKSRKVIVVV 643
+ S D WV+NEL+ NLE+ +CLH R+F+ G +I NII KS K I V+
Sbjct: 580 ISYSGHDSAWVKNELIPNLEK--EDIRICLHERNFVAGKSIVENIIN-CIEKSYKSIFVL 636
Query: 644 SQHFIQSRWCIFEYEIAQTWQFLRSHAGIIFIVLQKL-EKSLLRQQVELYRLLSRNTYLE 820
S +F+QS WC +E A F +I I+L + + S+ +L L+++ TYLE
Sbjct: 637 SPNFVQSEWCHYELYFAHHNLFHEGSDNLILILLDPIPQYSIPSSYHKLRALMAQRTYLE 696
Query: 821 WEDSVLGRHIFWRRLKKAL 877
W +FW L+ ++
Sbjct: 697 WPKEKSKHGLFWANLRASI 715
>ref|NP_001035591.1| toll-like receptor 5 [Bos taurus].
Length = 858
Score = 75.5 bits (184), Expect = 7e-14
Identities = 43/141 (30%), Positives = 74/141 (52%), Gaps = 3/141 (2%)
Frame = +2
Query: 464 LDLSSQDEDWVRNELVKNLE---EGVPPFHLCLHYRDFIPGVAIAANIIQEGFHKSRKVI 634
L SS+D +WV+N L+K+L+ F+LC RDF+PG ANI Q+ SRK++
Sbjct: 697 LCFSSKDFEWVQNALLKHLDVQYHSQNRFNLCFEERDFMPGENHIANI-QDAVWSSRKIV 755
Query: 635 VVVSQHFIQSRWCIFEYEIAQTWQFLRSHAGIIFIVLQKLEKSLLRQQVELYRLLSRNTY 814
+VS+HF++ WC+ + AQ+ + +I +V+ L + L + + + + Y
Sbjct: 756 CLVSRHFLRDGWCLEAFSYAQSRCLADLNGALIMVVVGSLSQFHLMRHQSIRGFVQKRQY 815
Query: 815 LEWEDSVLGRHIFWRRLKKAL 877
L W + + F +L + L
Sbjct: 816 LRWPEDLQDVDWFLNKLSQWL 836
>ref|NP_001070386.1| toll-like receptor 10 precursor [Bos taurus].
Length = 812
Score = 65.9 bits (159), Expect = 6e-11
Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 1/139 (0%)
Frame = +2
Query: 464 LDLSSQDEDWVRNELVKNLEEGVPPFHLCLHYRDFIPGVAIAANIIQEGFHKSRKVIVVV 643
+ S D WV+ EL+ +LE+ +CLH + PG ++ + I KS K I V+
Sbjct: 639 ISYSEHDSAWVKYELIPSLEKEDGSVLICLHEGNSDPGKSMTEDTIN-CIEKSYKSIFVL 697
Query: 644 SQHFIQSRWCIFEYEIAQTWQFLRSHAGIIFIVLQKLEKSLL-RQQVELYRLLSRNTYLE 820
S F+Q+ WC +E A F S II I+L+ + + + EL L+ + YLE
Sbjct: 698 SPSFVQTEWCHYEPYFAHHNLFHESLDYIILILLEPIPLYCIPTRYPELKALMEKKAYLE 757
Query: 821 WEDSVLGRHIFWRRLKKAL 877
W +FW L+ AL
Sbjct: 758 WPKDRRKCGLFWANLRAAL 776
>ref|NP_001029109.1| toll-like receptor 8 [Bos taurus].
Length = 1024
Score = 57.4 bits (137), Expect = 2e-08
Identities = 39/132 (29%), Positives = 72/132 (54%), Gaps = 1/132 (0%)
Frame = +2
Query: 488 DWVRNELVKNLEEGVPP-FHLCLHYRDFIPGVAIAANIIQEGFHKSRKVIVVVSQHFIQS 664
DWV NEL +LEE LCL RD+ PG+AI N++Q ++S+K I V+++ + ++
Sbjct: 878 DWVMNELRFHLEESEDKNVLLCLEERDWDPGLAIIDNLMQ-SINQSKKTIFVLTKKYAKN 936
Query: 665 RWCIFEYEIAQTWQFLRSHAGIIFIVLQKLEKSLLRQQVELYRLLSRNTYLEWEDSVLGR 844
+ +A + I+FI+L+ + + Q + L + + +++ L+W D+
Sbjct: 937 WNFKTAFYLALQRLMEENMDVIVFILLEPVLQH--SQYLRLRQRICKSSILQWPDNPKAE 994
Query: 845 HIFWRRLKKALL 880
+FW+ LK +L
Sbjct: 995 GLFWQSLKNVVL 1006
>ref|NP_001028933.1| toll-like receptor 7 [Bos taurus].
Length = 1058
Score = 53.9 bits (128), Expect = 2e-07
Identities = 42/137 (30%), Positives = 71/137 (51%), Gaps = 7/137 (5%)
Frame = +2
Query: 488 DWVRNELVKNLEEGVPP-FHLCLHYRDFIPGVAIAANIIQEGFHKSRKVIVVVSQHFIQS 664
+WV +ELV LE+ F+LCL RD++PG + N+ Q S+K + V++ + ++
Sbjct: 915 EWVLDELVAKLEDPREKCFNLCLEERDWLPGQPVLENLSQ-SIQLSKKTVFVMTDKYAKT 973
Query: 665 RWCIFEYEIAQTWQFLRSHAGII-----FIVLQKLEKSLLRQQ-VELYRLLSRNTYLEWE 826
++IA F SH ++ I+L LEK L + + ++L + L ++ LEW
Sbjct: 974 E----NFKIA----FYLSHQRLMDEKVDVIILIFLEKPLQKSKFLQLRKRLCGSSVLEWP 1025
Query: 827 DSVLGRHIFWRRLKKAL 877
+ FW+ LK AL
Sbjct: 1026 TNPQAHPYFWQCLKNAL 1042
>ref|NP_001069636.1| CD180 antigen [Bos taurus].
Length = 661
Score = 52.4 bits (124), Expect = 6e-07
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Frame = +2
Query: 275 CLRSESWDP-CVQVVPNISYQCMELNFYKIPDNIPTSVKILDLSFNYLSHLDSNSFSSFP 451
C S DP C + N +Y C L +IPD +P + ++L+ SFN+L + + +FS
Sbjct: 18 CKAIPSSDPKCTEKEGNRTYNCENLGLREIPDTLPNTTEVLEFSFNFLPTIQNTTFSRLI 77
Query: 452 ELQVLDLSSQDEDWVRNE 505
L LDL+ +WV +
Sbjct: 78 NLIFLDLTRCQINWVHED 95
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,258,045
Number of extensions: 1030704
Number of successful extensions: 3536
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 3513
Number of HSP's successfully gapped: 10
Length of query: 342
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 239
Effective length of database: 14,273,310
Effective search space: 3411321090
Effective search space used: 3411321090
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014086
(1026 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361406.1| PREDICTED: toll-like receptor 4-like [Sus sc... 330 8e-91
Alignment gi|NP_001106510.1| toll-like receptor 4 precursor [Sus scrofa]. 330 8e-91
Alignment gi|NP_998926.1| toll-like receptor 2 [Sus scrofa]. 103 2e-22
Alignment gi|NP_001026945.1| toll-like receptor 1 [Sus scrofa]. 85 7e-17
Alignment gi|NP_998925.1| toll-like receptor 6 [Sus scrofa]. 82 6e-16
Alignment gi|NP_001116674.1| toll-like receptor 5 [Sus scrofa]. 71 8e-13
Alignment gi|NP_001025705.1| toll-like receptor 10 [Sus scrofa]. 69 5e-12
Alignment gi|NP_999352.1| toll-like receptor 8 [Sus scrofa]. 57 2e-08
Alignment gi|NP_001090903.1| toll-like receptor 7 [Sus scrofa]. 54 2e-07
Alignment gi|NP_999522.1| CD180 antigen [Sus scrofa]. 50 3e-06
>ref|XP_003361406.1| PREDICTED: toll-like receptor 4-like [Sus scrofa].
Length = 841
Score = 330 bits (846), Expect = 8e-91
Identities = 159/160 (99%), Positives = 159/160 (99%)
Frame = +2
Query: 473 SSQDEDWVRNELVKNLEEGVPPFHLCLHYRDFIPGVAIAANIIQEGFHKSRKVIVVVSQH 652
SSQDEDWVRNELVKNLEEGVPPFHLCLHYRDFIPGVAIAANIIQEGFHKSRKVIVVVSQH
Sbjct: 682 SSQDEDWVRNELVKNLEEGVPPFHLCLHYRDFIPGVAIAANIIQEGFHKSRKVIVVVSQH 741
Query: 653 FIQSRWCIFEYEIAQTWQFLRSHAGIIFIVLQKLEKSLLRQQVELYRLLSRNTYLEWEDS 832
FIQSRWCIFEYEIAQTWQFLRSHAGIIFIVLQKLEKSLLRQQVELYRLLSRNTYLEWEDS
Sbjct: 742 FIQSRWCIFEYEIAQTWQFLRSHAGIIFIVLQKLEKSLLRQQVELYRLLSRNTYLEWEDS 801
Query: 833 VLGRHIFWRRLKKALLDGKPWSPEGTEDSESTQHDTTAFT 952
VLGRHIFWRRLKKALLDGKPWSPEGTEDSES QHDTTAFT
Sbjct: 802 VLGRHIFWRRLKKALLDGKPWSPEGTEDSESNQHDTTAFT 841
Score = 176 bits (446), Expect = 2e-44
Identities = 86/86 (100%), Positives = 86/86 (100%)
Frame = +2
Query: 218 MIPRIRLAVATIPAMAFLSCLRSESWDPCVQVVPNISYQCMELNFYKIPDNIPTSVKILD 397
MIPRIRLAVATIPAMAFLSCLRSESWDPCVQVVPNISYQCMELNFYKIPDNIPTSVKILD
Sbjct: 1 MIPRIRLAVATIPAMAFLSCLRSESWDPCVQVVPNISYQCMELNFYKIPDNIPTSVKILD 60
Query: 398 LSFNYLSHLDSNSFSSFPELQVLDLS 475
LSFNYLSHLDSNSFSSFPELQVLDLS
Sbjct: 61 LSFNYLSHLDSNSFSSFPELQVLDLS 86
>ref|NP_001106510.1| toll-like receptor 4 precursor [Sus scrofa].
Length = 841
Score = 330 bits (846), Expect = 8e-91
Identities = 159/160 (99%), Positives = 159/160 (99%)
Frame = +2
Query: 473 SSQDEDWVRNELVKNLEEGVPPFHLCLHYRDFIPGVAIAANIIQEGFHKSRKVIVVVSQH 652
SSQDEDWVRNELVKNLEEGVPPFHLCLHYRDFIPGVAIAANIIQEGFHKSRKVIVVVSQH
Sbjct: 682 SSQDEDWVRNELVKNLEEGVPPFHLCLHYRDFIPGVAIAANIIQEGFHKSRKVIVVVSQH 741
Query: 653 FIQSRWCIFEYEIAQTWQFLRSHAGIIFIVLQKLEKSLLRQQVELYRLLSRNTYLEWEDS 832
FIQSRWCIFEYEIAQTWQFLRSHAGIIFIVLQKLEKSLLRQQVELYRLLSRNTYLEWEDS
Sbjct: 742 FIQSRWCIFEYEIAQTWQFLRSHAGIIFIVLQKLEKSLLRQQVELYRLLSRNTYLEWEDS 801
Query: 833 VLGRHIFWRRLKKALLDGKPWSPEGTEDSESTQHDTTAFT 952
VLGRHIFWRRLKKALLDGKPWSPEGTEDSES QHDTTAFT
Sbjct: 802 VLGRHIFWRRLKKALLDGKPWSPEGTEDSESNQHDTTAFT 841
Score = 176 bits (446), Expect = 2e-44
Identities = 86/86 (100%), Positives = 86/86 (100%)
Frame = +2
Query: 218 MIPRIRLAVATIPAMAFLSCLRSESWDPCVQVVPNISYQCMELNFYKIPDNIPTSVKILD 397
MIPRIRLAVATIPAMAFLSCLRSESWDPCVQVVPNISYQCMELNFYKIPDNIPTSVKILD
Sbjct: 1 MIPRIRLAVATIPAMAFLSCLRSESWDPCVQVVPNISYQCMELNFYKIPDNIPTSVKILD 60
Query: 398 LSFNYLSHLDSNSFSSFPELQVLDLS 475
LSFNYLSHLDSNSFSSFPELQVLDLS
Sbjct: 61 LSFNYLSHLDSNSFSSFPELQVLDLS 86
>ref|NP_998926.1| toll-like receptor 2 [Sus scrofa].
Length = 785
Score = 103 bits (256), Expect = 2e-22
Identities = 55/136 (40%), Positives = 80/136 (58%), Gaps = 1/136 (0%)
Frame = +2
Query: 473 SSQDEDWVRNELVKNLEEGVPPFHLCLHYRDFIPGVAIAANIIQEGFHKSRKVIVVVSQH 652
S QD WV N +V+ LE PPF LCLH RDFIPG I NII + KS+K I V+S++
Sbjct: 649 SEQDSYWVENLMVQELEHFQPPFKLCLHKRDFIPGKWIIDNII-DSIEKSQKTIFVLSEN 707
Query: 653 FIQSRWCIFEYEIAQTWQFLRSHAGIIFIVLQKLEKSLLRQQ-VELYRLLSRNTYLEWED 829
F++S WC +E + + F + I I+L+ +EK + Q+ +L ++++ TYLEW
Sbjct: 708 FVKSEWCKYELDFSHFRLFDENDDTAILILLEPIEKKTIPQRFCKLRKIMNTRTYLEWPA 767
Query: 830 SVLGRHIFWRRLKKAL 877
R FW L+ A+
Sbjct: 768 DETQREGFWLNLRAAI 783
>ref|NP_001026945.1| toll-like receptor 1 [Sus scrofa].
Length = 796
Score = 84.7 bits (208), Expect = 7e-17
Identities = 50/140 (35%), Positives = 76/140 (54%), Gaps = 2/140 (1%)
Frame = +2
Query: 464 LDLSSQDEDWVRNELVKNLE-EGVPPFHLCLHYRDFIPGVAIAANIIQEGFHKSRKVIVV 640
+ S D WV+NEL+ N+E EG+ +CLH R+F+PG +I NII KS K I V
Sbjct: 645 ISYSGHDSAWVKNELLPNVEKEGIK---ICLHERNFVPGKSIMENIIN-CIEKSYKSIFV 700
Query: 641 VSQHFIQSRWCIFEYEIAQTWQFLRSHAGIIFIVLQKL-EKSLLRQQVELYRLLSRNTYL 817
+S +F+QS WC +E A F +I I+L + + S+ +L L+++ TYL
Sbjct: 701 LSPNFVQSEWCHYELYFAHHNLFHEGSDNLILILLDSIPQYSIPSSYHKLKALMAQRTYL 760
Query: 818 EWEDSVLGRHIFWRRLKKAL 877
EW +FW L+ ++
Sbjct: 761 EWPKEKSKHGLFWANLRASI 780
>ref|NP_998925.1| toll-like receptor 6 [Sus scrofa].
Length = 796
Score = 81.6 bits (200), Expect = 6e-16
Identities = 51/139 (36%), Positives = 74/139 (53%), Gaps = 2/139 (1%)
Frame = +2
Query: 464 LDLSSQDEDWVRNELVKNLE-EGVPPFHLCLHYRDFIPGVAIAANIIQEGFHKSRKVIVV 640
+ S D WV+NELV LE EG+ +CLH R+F+PG +I NII KS K I V
Sbjct: 646 ISYSEHDSAWVKNELVPCLEKEGIK---ICLHERNFVPGKSIMENIIN-CIEKSYKSIFV 701
Query: 641 VSQHFIQSRWCIFEYEIAQTWQFLRSHAGIIFIVLQKL-EKSLLRQQVELYRLLSRNTYL 817
+S +F+QS WC +E A F +I I+L + + S+ + +L L+++ TYL
Sbjct: 702 LSPNFVQSEWCHYELYFAHHNLFHEGSDNLILILLDPIPQNSIPGKYHKLKALMAQRTYL 761
Query: 818 EWEDSVLGRHIFWRRLKKA 874
EW FW ++ A
Sbjct: 762 EWPKEKSKHGPFWANIRAA 780
>ref|NP_001116674.1| toll-like receptor 5 [Sus scrofa].
Length = 856
Score = 71.2 bits (173), Expect = 8e-13
Identities = 41/142 (28%), Positives = 72/142 (50%), Gaps = 3/142 (2%)
Frame = +2
Query: 464 LDLSSQDEDWVRNELVKNLEEGVPP---FHLCLHYRDFIPGVAIAANIIQEGFHKSRKVI 634
L S +D +WV+ L+KNL+ +LC RDF+PG +NI Q+ SRKV+
Sbjct: 696 LCFSGKDFEWVQEALLKNLDAQYSDQNRLNLCFEERDFVPGEDRISNI-QDAVWSSRKVV 754
Query: 635 VVVSQHFIQSRWCIFEYEIAQTWQFLRSHAGIIFIVLQKLEKSLLRQQVELYRLLSRNTY 814
+VS+HF++ WC+ + AQ+ + +I +V+ L + L + + + + Y
Sbjct: 755 CLVSRHFLRDGWCLEAFSYAQSRCLADLNGTLIMVVVGSLPQYQLMKHQSIRGFVRKQQY 814
Query: 815 LEWEDSVLGRHIFWRRLKKALL 880
L W + + F +L + +L
Sbjct: 815 LRWPEDLQDVSWFLNKLSQYIL 836
>ref|NP_001025705.1| toll-like receptor 10 [Sus scrofa].
Length = 811
Score = 68.6 bits (166), Expect = 5e-12
Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 1/139 (0%)
Frame = +2
Query: 464 LDLSSQDEDWVRNELVKNLEEGVPPFHLCLHYRDFIPGVAIAANIIQEGFHKSRKVIVVV 643
+ D WV++EL+ NLE+ +C H + PG +I +II KS K I V+
Sbjct: 638 ISFCEHDSAWVKHELIPNLEKEDGSVLICFHEGNSDPGKSITEDIIN-CMEKSSKSIFVL 696
Query: 644 SQHFIQSRWCIFEYEIAQTWQFLRSHAGIIFIVLQKLEKSLL-RQQVELYRLLSRNTYLE 820
S +F+QS WC +E F + II I+L+ + + + L L+ + YLE
Sbjct: 697 SPNFVQSEWCHYELYFGHHHLFHKGSDDIILILLEPIPLYCIPTRYPALKALMEKKAYLE 756
Query: 821 WEDSVLGRHIFWRRLKKAL 877
W +FW L+ A+
Sbjct: 757 WPKDRRKCCLFWANLRAAI 775
>ref|NP_999352.1| toll-like receptor 8 [Sus scrofa].
Length = 1028
Score = 56.6 bits (135), Expect = 2e-08
Identities = 39/132 (29%), Positives = 72/132 (54%), Gaps = 1/132 (0%)
Frame = +2
Query: 488 DWVRNELVKNLEEGVPP-FHLCLHYRDFIPGVAIAANIIQEGFHKSRKVIVVVSQHFIQS 664
DWV NEL +LEE LCL RD+ PG+AI N++Q ++S+K I V+++ + ++
Sbjct: 884 DWVMNELRFHLEESEGKNVLLCLEERDWDPGLAIIDNLMQ-SINQSKKTIFVLTKKYAKN 942
Query: 665 RWCIFEYEIAQTWQFLRSHAGIIFIVLQKLEKSLLRQQVELYRLLSRNTYLEWEDSVLGR 844
+ +A + I+FI+L+ + + Q + L + + +++ L+W D+
Sbjct: 943 WNFKTAFYLALQRLMDENMDVIVFILLEPVLQH--SQYLRLRQRICKSSILQWPDNPKAE 1000
Query: 845 HIFWRRLKKALL 880
+FW+ LK +L
Sbjct: 1001 GLFWQSLKNVVL 1012
>ref|NP_001090903.1| toll-like receptor 7 [Sus scrofa].
Length = 1050
Score = 53.5 bits (127), Expect = 2e-07
Identities = 42/137 (30%), Positives = 71/137 (51%), Gaps = 7/137 (5%)
Frame = +2
Query: 488 DWVRNELVKNLEEGVPP-FHLCLHYRDFIPGVAIAANIIQEGFHKSRKVIVVVSQHFIQS 664
+WV +ELV LE+ F+LCL RD++PG + N+ Q S+K + V++ + ++
Sbjct: 907 EWVLDELVAKLEDPREKHFNLCLEERDWLPGQPVLENLSQ-SIQLSKKTVFVMTDKYAKT 965
Query: 665 RWCIFEYEIAQTWQFLRSHAGII-----FIVLQKLEKSLLRQQ-VELYRLLSRNTYLEWE 826
+++IA F SH ++ I+L LEK L + + +L + L ++ LEW
Sbjct: 966 E----KFKIA----FYLSHQRLMDEKVDVIILIFLEKPLQKSKFFQLRKRLCGSSVLEWP 1017
Query: 827 DSVLGRHIFWRRLKKAL 877
+ FW+ LK AL
Sbjct: 1018 TNPQAHPYFWQCLKNAL 1034
>ref|NP_999522.1| CD180 antigen [Sus scrofa].
Length = 661
Score = 49.7 bits (117), Expect = 3e-06
Identities = 22/72 (30%), Positives = 36/72 (50%)
Frame = +2
Query: 302 CVQVVPNISYQCMELNFYKIPDNIPTSVKILDLSFNYLSHLDSNSFSSFPELQVLDLSSQ 481
C + N +Y C L +IPD +P + L+ FN+L + + +FS L LDL+
Sbjct: 28 CTEKEANRTYNCENLGLREIPDTLPNMTEFLEFGFNFLPTIQNTTFSRLINLVFLDLTRC 87
Query: 482 DEDWVRNELVKN 517
+WV + +N
Sbjct: 88 QINWVHEDTFQN 99
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,283,488
Number of extensions: 662377
Number of successful extensions: 2522
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 2493
Number of HSP's successfully gapped: 13
Length of query: 342
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 242
Effective length of database: 8,854,232
Effective search space: 2142724144
Effective search space used: 2142724144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014086
(1026 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_067272.1| toll-like receptor 4 precursor [Mus musculus]. 272 3e-73
Alignment gi|NP_991389.1| toll-like receptor 13 precursor [Mus musculus]. 102 4e-22
Alignment gi|NP_036035.3| toll-like receptor 2 precursor [Mus musculus]. 102 5e-22
Alignment gi|NP_035734.3| toll-like receptor 6 [Mus musculus]. 91 1e-18
Alignment gi|NP_109607.1| toll-like receptor 1 precursor [Mus musculus]. 90 2e-18
Alignment gi|NP_058624.2| toll-like receptor 5 [Mus musculus]. 68 1e-11
Alignment gi|NP_573474.1| toll-like receptor 7 precursor [Mus musculus]. 57 2e-08
Alignment gi|NP_573475.2| toll-like receptor 8 precursor [Mus musculus]. 55 7e-08
Alignment gi|NP_991392.1| toll-like receptor 12 precursor [Mus musculus]. 52 6e-07
Alignment gi|NP_032559.2| CD180 antigen precursor [Mus musculus]. 49 8e-06
>ref|NP_067272.1| toll-like receptor 4 precursor [Mus musculus].
Length = 835
Score = 272 bits (696), Expect = 3e-73
Identities = 132/150 (88%), Positives = 140/150 (93%)
Frame = +2
Query: 473 SSQDEDWVRNELVKNLEEGVPPFHLCLHYRDFIPGVAIAANIIQEGFHKSRKVIVVVSQH 652
SSQ+EDWVRNELVKNLEEGVP FHLCLHYRDFIPGVAIAANIIQEGFHKSRKVIVVVS+H
Sbjct: 679 SSQNEDWVRNELVKNLEEGVPRFHLCLHYRDFIPGVAIAANIIQEGFHKSRKVIVVVSRH 738
Query: 653 FIQSRWCIFEYEIAQTWQFLRSHAGIIFIVLQKLEKSLLRQQVELYRLLSRNTYLEWEDS 832
FIQSRWCIFEYEIAQTWQFL S +GIIFIVL+K+EKSLLRQQVELYRLLSRNTYLEWED+
Sbjct: 739 FIQSRWCIFEYEIAQTWQFLSSRSGIIFIVLEKVEKSLLRQQVELYRLLSRNTYLEWEDN 798
Query: 833 VLGRHIFWRRLKKALLDGKPWSPEGTEDSE 922
LGRHIFWRRLK ALLDGK +PE T + E
Sbjct: 799 PLGRHIFWRRLKNALLDGKASNPEQTAEEE 828
Score = 89.0 bits (219), Expect = 6e-18
Identities = 48/86 (55%), Positives = 60/86 (69%)
Frame = +2
Query: 218 MIPRIRLAVATIPAMAFLSCLRSESWDPCVQVVPNISYQCMELNFYKIPDNIPTSVKILD 397
M+P LA I A+ F SCL S +PC++VVPNI+YQCM+ K+PD+IP+S K +D
Sbjct: 1 MMPPWLLARTLIMAL-FFSCLTPGSLNPCIEVVPNITYQCMDQKLSKVPDDIPSSTKNID 59
Query: 398 LSFNYLSHLDSNSFSSFPELQVLDLS 475
LSFN L L S SFS+F ELQ LDLS
Sbjct: 60 LSFNPLKILKSYSFSNFSELQWLDLS 85
>ref|NP_991389.1| toll-like receptor 13 precursor [Mus musculus].
Length = 991
Score = 102 bits (255), Expect = 4e-22
Identities = 55/139 (39%), Positives = 78/139 (56%), Gaps = 1/139 (0%)
Frame = +2
Query: 464 LDLSSQDEDWVRNELVKNLEEGVPP-FHLCLHYRDFIPGVAIAANIIQEGFHKSRKVIVV 640
+ S+ DE WV ELV LE+G F LCLH RDF PG+ I NI Q + SRK + V
Sbjct: 838 VSFSATDEAWVYKELVPALEQGSQTTFKLCLHQRDFEPGIDIFENI-QNAINTSRKTLCV 896
Query: 641 VSQHFIQSRWCIFEYEIAQTWQFLRSHAGIIFIVLQKLEKSLLRQQVELYRLLSRNTYLE 820
VS H++ S WC E ++A F II I L+++ L L +L+++ T++
Sbjct: 897 VSNHYLHSEWCRLEVQLASMKMFYEHKDVIILIFLEEIPNYKLSSYHRLRKLINKQTFIT 956
Query: 821 WEDSVLGRHIFWRRLKKAL 877
W DSV + +FW R++ AL
Sbjct: 957 WPDSVHQQPLFWARIRNAL 975
>ref|NP_036035.3| toll-like receptor 2 precursor [Mus musculus].
Length = 784
Score = 102 bits (254), Expect = 5e-22
Identities = 50/136 (36%), Positives = 81/136 (59%), Gaps = 1/136 (0%)
Frame = +2
Query: 473 SSQDEDWVRNELVKNLEEGVPPFHLCLHYRDFIPGVAIAANIIQEGFHKSRKVIVVVSQH 652
S QD WV N +V+ LE PPF LCLH RDF+PG I NII + KS K + V+S++
Sbjct: 648 SEQDSHWVENLMVQQLENSDPPFKLCLHKRDFVPGKWIIDNII-DSIEKSHKTVFVLSEN 706
Query: 653 FIQSRWCIFEYEIAQTWQFLRSHAGIIFIVLQKLEKSLLRQQ-VELYRLLSRNTYLEWED 829
F++S WC +E + + F ++ I ++L+ +E+ + Q+ +L ++++ TYLEW
Sbjct: 707 FVRSEWCKYELDFSHFRLFDENNDAAILVLLEPIERKAIPQRFCKLRKIMNTKTYLEWPL 766
Query: 830 SVLGRHIFWRRLKKAL 877
+ +FW L+ A+
Sbjct: 767 DEGQQEVFWVNLRTAI 782
>ref|NP_035734.3| toll-like receptor 6 [Mus musculus].
Length = 806
Score = 91.3 bits (225), Expect = 1e-18
Identities = 52/137 (37%), Positives = 76/137 (55%), Gaps = 1/137 (0%)
Frame = +2
Query: 473 SSQDEDWVRNELVKNLEEGVPPFHLCLHYRDFIPGVAIAANIIQEGFHKSRKVIVVVSQH 652
S D WV+NEL+ NLE+ +CLH R+F+PG +I NII KS K I V+S H
Sbjct: 660 SEHDSAWVKNELLPNLEKD--DIRVCLHERNFVPGKSIVENIINF-IEKSYKAIFVLSPH 716
Query: 653 FIQSRWCIFEYEIAQTWQFLRSHAGIIFIVLQK-LEKSLLRQQVELYRLLSRNTYLEWED 829
FIQS WC +E A F +I I+L+ L+ ++ + +L L+++ TYLEW
Sbjct: 717 FIQSEWCHYELYFAHHNLFHEGSDNLILILLEPILQNNIPSRYHKLRALMAQRTYLEWPT 776
Query: 830 SVLGRHIFWRRLKKALL 880
R +FW L+ + +
Sbjct: 777 EKGKRGLFWANLRASFI 793
>ref|NP_109607.1| toll-like receptor 1 precursor [Mus musculus].
Length = 795
Score = 90.1 bits (222), Expect = 2e-18
Identities = 53/136 (38%), Positives = 73/136 (53%), Gaps = 1/136 (0%)
Frame = +2
Query: 473 SSQDEDWVRNELVKNLEEGVPPFHLCLHYRDFIPGVAIAANIIQEGFHKSRKVIVVVSQH 652
S D WV+NEL+ NLE+ +CLH R+F+PG +I NII KS K I V+S H
Sbjct: 647 SGHDSAWVKNELLPNLEKD--DIQICLHERNFVPGKSIVENIINF-IEKSYKSIFVLSPH 703
Query: 653 FIQSRWCIFEYEIAQTWQFLRSHAGIIFIVLQKL-EKSLLRQQVELYRLLSRNTYLEWED 829
FIQS WC +E A F +I I+L + + S+ +L L+SR TYLEW
Sbjct: 704 FIQSEWCHYELYFAHHNLFHEGSDNLILILLAPIPQYSIPTNYHKLKTLMSRRTYLEWPT 763
Query: 830 SVLGRHIFWRRLKKAL 877
+FW L+ ++
Sbjct: 764 EKNKHGLFWANLRASI 779
>ref|NP_058624.2| toll-like receptor 5 [Mus musculus].
Length = 873
Score = 68.2 bits (165), Expect = 1e-11
Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 3/161 (1%)
Frame = +2
Query: 473 SSQDEDWVRNELVKNLEEGVPP---FHLCLHYRDFIPGVAIAANIIQEGFHKSRKVIVVV 643
SS+D +W +N L+K+L+ LC RDFIPG +NI Q SRK + +V
Sbjct: 715 SSKDFEWAQNALLKHLDAHYSSRNRLRLCFEERDFIPGENHISNI-QAAVWGSRKTVCLV 773
Query: 644 SQHFIQSRWCIFEYEIAQTWQFLRSHAGIIFIVLQKLEKSLLRQQVELYRLLSRNTYLEW 823
S+HF++ WC+ + AQ+ + +I +V+ L + L + + L + YL W
Sbjct: 774 SRHFLKDGWCLEAFRYAQSRSLSDLKSILIVVVVGSLSQYQLMRHETIRGFLQKQQYLRW 833
Query: 824 EDSVLGRHIFWRRLKKALLDGKPWSPEGTEDSESTQHDTTA 946
+ + F +L +L +G + S S Q T A
Sbjct: 834 PEDLQDVGWFLDKLSGCILK----EEKGKKRSSSIQLRTIA 870
>ref|NP_573474.1| toll-like receptor 7 precursor [Mus musculus].
Length = 1050
Score = 57.0 bits (136), Expect = 2e-08
Identities = 43/137 (31%), Positives = 72/137 (52%), Gaps = 7/137 (5%)
Frame = +2
Query: 488 DWVRNELVKNLEEGVPP-FHLCLHYRDFIPGVAIAANIIQEGFHKSRKVIVVVSQHFIQS 664
+WV ELV LE+ F+LCL RD++PG + N+ Q S+K + V++Q + ++
Sbjct: 907 EWVLQELVAKLEDPREKHFNLCLEERDWLPGQPVLENLSQ-SIQLSKKTVFVMTQKYAKT 965
Query: 665 RWCIFEYEIAQTWQFLRSHAGII-----FIVLQKLEKSLLRQQ-VELYRLLSRNTYLEWE 826
+++A F SH ++ I+L LEK L + + ++L + L R++ LEW
Sbjct: 966 E----SFKMA----FYLSHQRLLDEKVDVIILIFLEKPLQKSKFLQLRKRLCRSSVLEWP 1017
Query: 827 DSVLGRHIFWRRLKKAL 877
+ FW+ LK AL
Sbjct: 1018 ANPQAHPYFWQCLKNAL 1034
>ref|NP_573475.2| toll-like receptor 8 precursor [Mus musculus].
Length = 1032
Score = 55.5 bits (132), Expect = 7e-08
Identities = 39/132 (29%), Positives = 72/132 (54%), Gaps = 1/132 (0%)
Frame = +2
Query: 488 DWVRNELVKNLEEGVPP-FHLCLHYRDFIPGVAIAANIIQEGFHKSRKVIVVVSQHFIQS 664
DWV NEL +LEE LCL RD+ PG+ I N++Q ++S+K I V+++ + +S
Sbjct: 886 DWVINELRYHLEESEDKSVLLCLEERDWDPGLPIIDNLMQS-INQSKKTIFVLTKKYAKS 944
Query: 665 RWCIFEYEIAQTWQFLRSHAGIIFIVLQKLEKSLLRQQVELYRLLSRNTYLEWEDSVLGR 844
+ +A + IIFI+L+ + + Q + L + + +++ L+W ++
Sbjct: 945 WNFKTAFYLALQRLMDENMDVIIFILLEPVLQ--YSQYLRLRQRICKSSILQWPNNPKAE 1002
Query: 845 HIFWRRLKKALL 880
++FW+ LK +L
Sbjct: 1003 NLFWQSLKNVVL 1014
>ref|NP_991392.1| toll-like receptor 12 precursor [Mus musculus].
Length = 906
Score = 52.4 bits (124), Expect = 6e-07
Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 4/137 (2%)
Frame = +2
Query: 479 QDEDWVRNELVKNLEEGVPP---FHLCLHYRDFIPGVAIAANIIQEGFHKSRKVIVVVSQ 649
QD+ WV EL+ LE +P LCL RDF PG + N++ + SR + V+S
Sbjct: 770 QDQGWVIEELLPALEGFLPAGLGLRLCLPERDFEPGKDVVDNVV-DSMLSSRTTLCVLSG 828
Query: 650 HFIQSRWCIFEYEIAQTWQFLRSHAGIIFIV-LQKLEKSLLRQQVELYRLLSRNTYLEWE 826
+ + C E +A + ++ +V L+ + + L L RLL R Y W
Sbjct: 829 QALCNPRCRLELRLATSLLLAAPSPPVLLLVFLEPISRHQLPGYHRLARLLRRGDYCLWP 888
Query: 827 DSVLGRHIFWRRLKKAL 877
+ + FW L+ L
Sbjct: 889 EEEERKSGFWTWLRSRL 905
>ref|NP_032559.2| CD180 antigen precursor [Mus musculus].
Length = 661
Score = 48.5 bits (114), Expect = 8e-06
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +2
Query: 257 AMAFLSCLRSESWDP-CVQVVPNISYQCMELNFYKIPDNIPTSVKILDLSFNYLSHLDSN 433
A+ SC + S D C++ N +Y C L +IP +P S + L+ SFN L + +
Sbjct: 12 ALFLASCRATTSSDQKCIEKEVNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNT 71
Query: 434 SFSSFPELQVLDLSSQDEDWVRNE 505
+FS L LDL+ W+ +
Sbjct: 72 TFSRLINLTFLDLTRCQIYWIHED 95
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,194,400
Number of extensions: 881664
Number of successful extensions: 3038
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 3012
Number of HSP's successfully gapped: 11
Length of query: 342
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 240
Effective length of database: 12,553,887
Effective search space: 3012932880
Effective search space used: 3012932880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014086
(1026 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_612564.1| toll-like receptor 4 precursor [Homo sapiens]. 286 2e-77
Alignment gi|NP_003255.2| toll-like receptor 2 precursor [Homo sapiens]. 100 2e-21
Alignment gi|NP_003254.2| toll-like receptor 1 precursor [Homo sapiens]. 90 3e-18
Alignment gi|NP_006059.2| toll-like receptor 6 precursor [Homo sapiens]. 84 2e-16
Alignment gi|NP_001182037.1| toll-like receptor 10 isoform b [Homo sapien... 76 4e-14
Alignment gi|NP_001182036.1| toll-like receptor 10 isoform a precursor [H... 76 4e-14
Alignment gi|NP_001182035.1| toll-like receptor 10 isoform a precursor [H... 76 4e-14
Alignment gi|NP_001017388.1| toll-like receptor 10 isoform a precursor [H... 76 4e-14
Alignment gi|NP_112218.2| toll-like receptor 10 isoform a precursor [Homo... 76 4e-14
Alignment gi|NP_003259.2| toll-like receptor 5 precursor [Homo sapiens]. 76 6e-14
>ref|NP_612564.1| toll-like receptor 4 precursor [Homo sapiens].
Length = 839
Score = 286 bits (732), Expect = 2e-77
Identities = 138/158 (87%), Positives = 145/158 (91%)
Frame = +2
Query: 473 SSQDEDWVRNELVKNLEEGVPPFHLCLHYRDFIPGVAIAANIIQEGFHKSRKVIVVVSQH 652
SSQDEDWVRNELVKNLEEGVPPF LCLHYRDFIPGVAIAANII EGFHKSRKVIVVVSQH
Sbjct: 681 SSQDEDWVRNELVKNLEEGVPPFQLCLHYRDFIPGVAIAANIIHEGFHKSRKVIVVVSQH 740
Query: 653 FIQSRWCIFEYEIAQTWQFLRSHAGIIFIVLQKLEKSLLRQQVELYRLLSRNTYLEWEDS 832
FIQSRWCIFEYEIAQTWQFL S AGIIFIVLQK+EK+LLRQQVELYRLLSRNTYLEWEDS
Sbjct: 741 FIQSRWCIFEYEIAQTWQFLSSRAGIIFIVLQKVEKTLLRQQVELYRLLSRNTYLEWEDS 800
Query: 833 VLGRHIFWRRLKKALLDGKPWSPEGTEDSESTQHDTTA 946
VLGRHIFWRRL+KALLDGK W+PEGT + + T+
Sbjct: 801 VLGRHIFWRRLRKALLDGKSWNPEGTVGTGCNWQEATS 838
Score = 132 bits (332), Expect = 5e-31
Identities = 65/86 (75%), Positives = 71/86 (82%)
Frame = +2
Query: 218 MIPRIRLAVATIPAMAFLSCLRSESWDPCVQVVPNISYQCMELNFYKIPDNIPTSVKILD 397
M+ RLA IPAMAFLSC+R ESW+PCV+VVPNI+YQCMELNFYKIPDN+P S K LD
Sbjct: 1 MMSASRLAGTLIPAMAFLSCVRPESWEPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLD 60
Query: 398 LSFNYLSHLDSNSFSSFPELQVLDLS 475
LSFN L HL S SF SFPELQVLDLS
Sbjct: 61 LSFNPLRHLGSYSFFSFPELQVLDLS 86
>ref|NP_003255.2| toll-like receptor 2 precursor [Homo sapiens].
Length = 784
Score = 100 bits (250), Expect = 2e-21
Identities = 53/136 (38%), Positives = 80/136 (58%), Gaps = 1/136 (0%)
Frame = +2
Query: 473 SSQDEDWVRNELVKNLEEGVPPFHLCLHYRDFIPGVAIAANIIQEGFHKSRKVIVVVSQH 652
S +D WV N +V+ LE PPF LCLH RDFIPG I NII + KS K + V+S++
Sbjct: 648 SERDAYWVENLMVQELENFNPPFKLCLHKRDFIPGKWIIDNII-DSIEKSHKTVFVLSEN 706
Query: 653 FIQSRWCIFEYEIAQTWQFLRSHAGIIFIVLQKLEKSLLRQQ-VELYRLLSRNTYLEWED 829
F++S WC +E + + F ++ I I+L+ +EK + Q+ +L ++++ TYLEW
Sbjct: 707 FVKSEWCKYELDFSHFRLFDENNDAAILILLEPIEKKAIPQRFCKLRKIMNTKTYLEWPM 766
Query: 830 SVLGRHIFWRRLKKAL 877
R FW L+ A+
Sbjct: 767 DEAQREGFWVNLRAAI 782
>ref|NP_003254.2| toll-like receptor 1 precursor [Homo sapiens].
Length = 786
Score = 90.1 bits (222), Expect = 3e-18
Identities = 54/140 (38%), Positives = 78/140 (55%), Gaps = 2/140 (1%)
Frame = +2
Query: 464 LDLSSQDEDWVRNELVKNLE-EGVPPFHLCLHYRDFIPGVAIAANIIQEGFHKSRKVIVV 640
+ S D WV+NEL+ NLE EG+ +CLH R+F+PG +I NII KS K I V
Sbjct: 641 ISYSGHDSFWVKNELLPNLEKEGM---QICLHERNFVPGKSIVENIIT-CIEKSYKSIFV 696
Query: 641 VSQHFIQSRWCIFEYEIAQTWQFLRSHAGIIFIVLQKL-EKSLLRQQVELYRLLSRNTYL 817
+S +F+QS WC +E A F +I I+L+ + + S+ +L L++R TYL
Sbjct: 697 LSPNFVQSEWCHYELYFAHHNLFHEGSNSLILILLEPIPQYSIPSSYHKLKSLMARRTYL 756
Query: 818 EWEDSVLGRHIFWRRLKKAL 877
EW R +FW L+ A+
Sbjct: 757 EWPKEKSKRGLFWANLRAAI 776
>ref|NP_006059.2| toll-like receptor 6 precursor [Homo sapiens].
Length = 796
Score = 84.3 bits (207), Expect = 2e-16
Identities = 48/138 (34%), Positives = 75/138 (54%), Gaps = 1/138 (0%)
Frame = +2
Query: 464 LDLSSQDEDWVRNELVKNLEEGVPPFHLCLHYRDFIPGVAIAANIIQEGFHKSRKVIVVV 643
+ S D WV++ELV LE+ +CLH R+F+PG +I NII KS K I V+
Sbjct: 646 ISYSEHDSAWVKSELVPYLEK--EDIQICLHERNFVPGKSIVENIIN-CIEKSYKSIFVL 702
Query: 644 SQHFIQSRWCIFEYEIAQTWQFLRSHAGIIFIVLQKL-EKSLLRQQVELYRLLSRNTYLE 820
S +F+QS WC +E A F +I I+L+ + + S+ + +L L+++ TYL+
Sbjct: 703 SPNFVQSEWCHYELYFAHHNLFHEGSNNLILILLEPIPQNSIPNKYHKLKALMTQRTYLQ 762
Query: 821 WEDSVLGRHIFWRRLKKA 874
W R +FW ++ A
Sbjct: 763 WPKEKSKRGLFWANIRAA 780
>ref|NP_001182037.1| toll-like receptor 10 isoform b [Homo sapiens].
Length = 797
Score = 76.3 bits (186), Expect = 4e-14
Identities = 46/139 (33%), Positives = 72/139 (51%), Gaps = 1/139 (0%)
Frame = +2
Query: 464 LDLSSQDEDWVRNELVKNLEEGVPPFHLCLHYRDFIPGVAIAANIIQEGFHKSRKVIVVV 643
+ S D WV+NEL+ NLE+ +CL+ F PG +I+ NI+ KS K I V+
Sbjct: 624 ISYSEHDSLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIV-SFIEKSYKSIFVL 682
Query: 644 SQHFIQSRWCIFEYEIAQTWQFLRSHAGIIFIVLQKLEKSLLRQQV-ELYRLLSRNTYLE 820
S +F+Q+ WC +E+ A F + II I+L+ + + + +L LL + YLE
Sbjct: 683 SPNFVQNEWCHYEFYFAHHNLFHENSDHIILILLEPIPFYCIPTRYHKLKALLEKKAYLE 742
Query: 821 WEDSVLGRHIFWRRLKKAL 877
W +FW L+ A+
Sbjct: 743 WPKDRRKCGLFWANLRAAI 761
>ref|NP_001182036.1| toll-like receptor 10 isoform a precursor [Homo sapiens].
Length = 811
Score = 76.3 bits (186), Expect = 4e-14
Identities = 46/139 (33%), Positives = 72/139 (51%), Gaps = 1/139 (0%)
Frame = +2
Query: 464 LDLSSQDEDWVRNELVKNLEEGVPPFHLCLHYRDFIPGVAIAANIIQEGFHKSRKVIVVV 643
+ S D WV+NEL+ NLE+ +CL+ F PG +I+ NI+ KS K I V+
Sbjct: 638 ISYSEHDSLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIV-SFIEKSYKSIFVL 696
Query: 644 SQHFIQSRWCIFEYEIAQTWQFLRSHAGIIFIVLQKLEKSLLRQQV-ELYRLLSRNTYLE 820
S +F+Q+ WC +E+ A F + II I+L+ + + + +L LL + YLE
Sbjct: 697 SPNFVQNEWCHYEFYFAHHNLFHENSDHIILILLEPIPFYCIPTRYHKLKALLEKKAYLE 756
Query: 821 WEDSVLGRHIFWRRLKKAL 877
W +FW L+ A+
Sbjct: 757 WPKDRRKCGLFWANLRAAI 775
>ref|NP_001182035.1| toll-like receptor 10 isoform a precursor [Homo sapiens].
Length = 811
Score = 76.3 bits (186), Expect = 4e-14
Identities = 46/139 (33%), Positives = 72/139 (51%), Gaps = 1/139 (0%)
Frame = +2
Query: 464 LDLSSQDEDWVRNELVKNLEEGVPPFHLCLHYRDFIPGVAIAANIIQEGFHKSRKVIVVV 643
+ S D WV+NEL+ NLE+ +CL+ F PG +I+ NI+ KS K I V+
Sbjct: 638 ISYSEHDSLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIV-SFIEKSYKSIFVL 696
Query: 644 SQHFIQSRWCIFEYEIAQTWQFLRSHAGIIFIVLQKLEKSLLRQQV-ELYRLLSRNTYLE 820
S +F+Q+ WC +E+ A F + II I+L+ + + + +L LL + YLE
Sbjct: 697 SPNFVQNEWCHYEFYFAHHNLFHENSDHIILILLEPIPFYCIPTRYHKLKALLEKKAYLE 756
Query: 821 WEDSVLGRHIFWRRLKKAL 877
W +FW L+ A+
Sbjct: 757 WPKDRRKCGLFWANLRAAI 775
>ref|NP_001017388.1| toll-like receptor 10 isoform a precursor [Homo sapiens].
Length = 811
Score = 76.3 bits (186), Expect = 4e-14
Identities = 46/139 (33%), Positives = 72/139 (51%), Gaps = 1/139 (0%)
Frame = +2
Query: 464 LDLSSQDEDWVRNELVKNLEEGVPPFHLCLHYRDFIPGVAIAANIIQEGFHKSRKVIVVV 643
+ S D WV+NEL+ NLE+ +CL+ F PG +I+ NI+ KS K I V+
Sbjct: 638 ISYSEHDSLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIV-SFIEKSYKSIFVL 696
Query: 644 SQHFIQSRWCIFEYEIAQTWQFLRSHAGIIFIVLQKLEKSLLRQQV-ELYRLLSRNTYLE 820
S +F+Q+ WC +E+ A F + II I+L+ + + + +L LL + YLE
Sbjct: 697 SPNFVQNEWCHYEFYFAHHNLFHENSDHIILILLEPIPFYCIPTRYHKLKALLEKKAYLE 756
Query: 821 WEDSVLGRHIFWRRLKKAL 877
W +FW L+ A+
Sbjct: 757 WPKDRRKCGLFWANLRAAI 775
>ref|NP_112218.2| toll-like receptor 10 isoform a precursor [Homo sapiens].
Length = 811
Score = 76.3 bits (186), Expect = 4e-14
Identities = 46/139 (33%), Positives = 72/139 (51%), Gaps = 1/139 (0%)
Frame = +2
Query: 464 LDLSSQDEDWVRNELVKNLEEGVPPFHLCLHYRDFIPGVAIAANIIQEGFHKSRKVIVVV 643
+ S D WV+NEL+ NLE+ +CL+ F PG +I+ NI+ KS K I V+
Sbjct: 638 ISYSEHDSLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIV-SFIEKSYKSIFVL 696
Query: 644 SQHFIQSRWCIFEYEIAQTWQFLRSHAGIIFIVLQKLEKSLLRQQV-ELYRLLSRNTYLE 820
S +F+Q+ WC +E+ A F + II I+L+ + + + +L LL + YLE
Sbjct: 697 SPNFVQNEWCHYEFYFAHHNLFHENSDHIILILLEPIPFYCIPTRYHKLKALLEKKAYLE 756
Query: 821 WEDSVLGRHIFWRRLKKAL 877
W +FW L+ A+
Sbjct: 757 WPKDRRKCGLFWANLRAAI 775
>ref|NP_003259.2| toll-like receptor 5 precursor [Homo sapiens].
Length = 858
Score = 75.9 bits (185), Expect = 6e-14
Identities = 43/142 (30%), Positives = 74/142 (52%), Gaps = 3/142 (2%)
Frame = +2
Query: 464 LDLSSQDEDWVRNELVKNLEEGVPP---FHLCLHYRDFIPGVAIAANIIQEGFHKSRKVI 634
L SS+D WV+N L+K+L+ F+LC RDF+PG ANI Q+ SRK++
Sbjct: 697 LCFSSKDFTWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANI-QDAIWNSRKIV 755
Query: 635 VVVSQHFIQSRWCIFEYEIAQTWQFLRSHAGIIFIVLQKLEKSLLRQQVELYRLLSRNTY 814
+VS+HF++ WC+ + AQ ++ +I +V+ L + L + + + + Y
Sbjct: 756 CLVSRHFLRDGWCLEAFSYAQGRCLSDLNSALIMVVVGSLSQYQLMKHQSIRGFVQKQQY 815
Query: 815 LEWEDSVLGRHIFWRRLKKALL 880
L W + + F +L + +L
Sbjct: 816 LRWPEDLQDVGWFLHKLSQQIL 837
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,254,394
Number of extensions: 1050427
Number of successful extensions: 3729
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 3696
Number of HSP's successfully gapped: 14
Length of query: 342
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 239
Effective length of database: 14,901,872
Effective search space: 3561547408
Effective search space used: 3561547408
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014086
(1026 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 1045 0.0
gb|JH118734.1| Sus scrofa unplaced genomic scaffold ChrUScaf2125 611 e-172
>Sscrofa_Chr01
|| Length = 315321322
Score = 1045 bits (527), Expect = 0.0
Identities = 547/554 (98%)
Strand = Plus / Plus
Query: 473 tccagccaggacgaagactgggtgaggaatgaactggtaaagaacttggaggagggggtg 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289784559 tccagccaggacgaagactgggtgaggaatgaactggtaaagaacttggaggagggggtg 289784618
Query: 533 cccccttttcatctctgccttcactacagagacttcattcccggtgtggccatcgctgct 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289784619 cccccttttcatctctgccttcactacagagacttcattcccggtgtggccatcgctgct 289784678
Query: 593 aacatcatccaggaaggtttccacaaaagtcggaaggttattgtcgtggtgtcccagcac 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289784679 aacatcatccaggaaggtttccacaaaagtcggaaggttattgtcgtggtgtcccagcac 289784738
Query: 653 ttcatacagagccgatggtgtatctttgagtatgagattgcccagacctggcagtttctg 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289784739 ttcatacagagccgatggtgtatctttgagtatgagattgcccagacctggcagtttctg 289784798
Query: 713 aggagtcatgccggcatcatcttcatcgtcctgcagaagttggagaagtccctgctgcgg 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289784799 aggagtcatgccggcatcatcttcatcgtcctgcagaagttggagaagtccctgctgcgg 289784858
Query: 773 cagcaggtggagctgtatcgccttctcagcaggaatacctacctggagtgggaagacagc 832
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 289784859 cagcaggtggagctgtatcgccttctcagcaggaatacctacctggagtgggaggacagc 289784918
Query: 833 gtcctggggcggcacatcttctggagacgactcaagaaagccttgctggatggtaaacca 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289784919 gtcctggggcggcacatcttctggagacgactcaagaaagccttgctggatggtaaacca 289784978
Query: 893 tggagtccagaaggaacagaggattcagaaagcacccagcatgataccacagccttcact 952
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 289784979 tggagtccagaaggaacagaggattcagaaagcaaccagcatgatacaacagccttcact 289785038
Query: 953 taaggagggaaaactncccacgtgtcccttggtcagctggatcccgtgcttgtttaccag 1012
||||||||||||||| || ||||||||||||||||||||||||||||||||||| || ||
Sbjct: 289785039 taaggagggaaaactcccaacgtgtcccttggtcagctggatcccgtgcttgttaacaag 289785098
Query: 1013 tactaaatcctgca 1026
||||||||||||||
Sbjct: 289785099 tactaaatcctgca 289785112
Score = 611 bits (308), Expect = e-172
Identities = 311/312 (99%)
Strand = Plus / Plus
Query: 1 agaggagataaatattagagaaacaaaagtccagaatgcgaaggctgccattctcacttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289775847 agaggagataaatattagagaaacaaaagtccagaatgcgaaggctgccattctcacttc 289775906
Query: 61 ctcttaccccttaacccagtgctgctttgaatagagtcagtgcccccgggcagtgtgctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289775907 ctcttaccccttaacccagtgctgctttgaatagagtcagtgcccccgggcagtgtgctg 289775966
Query: 121 aggagagaagacggcagtgcctcggaggctgctctgaccagcagatacagagggtcatgc 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 289775967 aggagagaagacggcagtgcctgggaggctgctctgaccagcagatacagagggtcatgc 289776026
Query: 181 tttctccgggtcacttctgttcacggaaaatgccaggatgattcctcgcatccgcctggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289776027 tttctccgggtcacttctgttcacggaaaatgccaggatgattcctcgcatccgcctggc 289776086
Query: 241 tgtggccacgatcccagccatggcctttctctcctgcctgagatctgagagctgggaccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289776087 tgtggccacgatcccagccatggcctttctctcctgcctgagatctgagagctgggaccc 289776146
Query: 301 ttgcgtgcaggt 312
||||||||||||
Sbjct: 289776147 ttgcgtgcaggt 289776158
Score = 337 bits (170), Expect = 7e-90
Identities = 170/170 (100%)
Strand = Plus / Plus
Query: 308 caggtggttcctaacattagttaccaatgcatggagctgaatttctacaaaatccctgac 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289780024 caggtggttcctaacattagttaccaatgcatggagctgaatttctacaaaatccctgac 289780083
Query: 368 aacatccccacatcagtcaagatactggacctgagctttaactacctgagtcatttagac 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289780084 aacatccccacatcagtcaagatactggacctgagctttaactacctgagtcatttagac 289780143
Query: 428 agcaatagcttctccagctttccagaactgcaggtgctggatttatccag 477
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289780144 agcaatagcttctccagctttccagaactgcaggtgctggatttatccag 289780193
>gb|JH118734.1| Sus scrofa unplaced genomic scaffold ChrUScaf2125
Length = 112571
Score = 611 bits (308), Expect = e-172
Identities = 311/312 (99%)
Strand = Plus / Plus
Query: 1 agaggagataaatattagagaaacaaaagtccagaatgcgaaggctgccattctcacttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32443 agaggagataaatattagagaaacaaaagtccagaatgcgaaggctgccattctcacttc 32502
Query: 61 ctcttaccccttaacccagtgctgctttgaatagagtcagtgcccccgggcagtgtgctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32503 ctcttaccccttaacccagtgctgctttgaatagagtcagtgcccccgggcagtgtgctg 32562
Query: 121 aggagagaagacggcagtgcctcggaggctgctctgaccagcagatacagagggtcatgc 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 32563 aggagagaagacggcagtgcctgggaggctgctctgaccagcagatacagagggtcatgc 32622
Query: 181 tttctccgggtcacttctgttcacggaaaatgccaggatgattcctcgcatccgcctggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32623 tttctccgggtcacttctgttcacggaaaatgccaggatgattcctcgcatccgcctggc 32682
Query: 241 tgtggccacgatcccagccatggcctttctctcctgcctgagatctgagagctgggaccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32683 tgtggccacgatcccagccatggcctttctctcctgcctgagatctgagagctgggaccc 32742
Query: 301 ttgcgtgcaggt 312
||||||||||||
Sbjct: 32743 ttgcgtgcaggt 32754
Score = 337 bits (170), Expect = 7e-90
Identities = 170/170 (100%)
Strand = Plus / Plus
Query: 308 caggtggttcctaacattagttaccaatgcatggagctgaatttctacaaaatccctgac 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36620 caggtggttcctaacattagttaccaatgcatggagctgaatttctacaaaatccctgac 36679
Query: 368 aacatccccacatcagtcaagatactggacctgagctttaactacctgagtcatttagac 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36680 aacatccccacatcagtcaagatactggacctgagctttaactacctgagtcatttagac 36739
Query: 428 agcaatagcttctccagctttccagaactgcaggtgctggatttatccag 477
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36740 agcaatagcttctccagctttccagaactgcaggtgctggatttatccag 36789
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,986,309
Number of extensions: 222
Number of successful extensions: 222
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 5
Length of query: 1026
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1005
Effective length of database: 2,808,413,156
Effective search space: 2822455221780
Effective search space used: 2822455221780
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)