Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014089
(876 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014887.1| notchless protein homolog 1 [Bos taurus]. 554 e-158
Alignment gi|NP_001098945.1| WD repeat-containing protein 5 [Bos taurus]. 112 4e-25
Alignment gi|XP_001788325.2| PREDICTED: WD repeat domain 5 [Bos taurus]. 107 1e-23
Alignment gi|NP_001157418.1| WD repeat-containing protein 38 [Bos taurus]. 99 5e-21
Alignment gi|NP_001092501.1| WD repeat-containing protein 51B [Bos taurus]. 97 1e-20
Alignment gi|NP_777088.1| platelet-activating factor acetylhydrolase IB s... 97 1e-20
Alignment gi|XP_001251626.3| PREDICTED: WD repeat domain 51B-like, partia... 97 1e-20
Alignment gi|NP_001069398.1| WD repeat-containing protein 69 [Bos taurus]. 97 2e-20
Alignment gi|NP_001069375.1| ribosome biogenesis protein WDR12 [Bos tauru... 92 5e-19
Alignment gi|NP_001069717.1| F-box/WD repeat-containing protein 7 [Bos ta... 92 8e-19
>ref|NP_001014887.1| notchless protein homolog 1 [Bos taurus].
Length = 486
Score = 554 bits (1428), Expect = e-158
Identities = 266/272 (97%), Positives = 269/272 (98%)
Frame = +1
Query: 61 RDVQRLLVQFQDEGGQLLGSPFDVPVDITPDKLQLVCNALLAQEDPLPLAFYVHDAEIVS 240
RDVQRLLVQFQDEGGQLLGSPFDVPVDITPDKLQLVCNALLAQEDPLPLAFYVHDAEIVS
Sbjct: 13 RDVQRLLVQFQDEGGQLLGSPFDVPVDITPDKLQLVCNALLAQEDPLPLAFYVHDAEIVS 72
Query: 241 SLGKTLESQAVETEKVLDIIYQPQAVFKVRAVTRCTSSLEGHSEAVISVAFSPTGKYLAS 420
SLG+TLESQAVETEKVLDIIYQPQA+F+VRAVTRCTSSLEGHSEAVISVAFSPTGKYLAS
Sbjct: 73 SLGRTLESQAVETEKVLDIIYQPQAIFRVRAVTRCTSSLEGHSEAVISVAFSPTGKYLAS 132
Query: 421 GSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGKQV 600
GSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGKQV
Sbjct: 133 GSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGKQV 192
Query: 601 GRALAGHSKWITALSWEPLHANPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQSVTC 780
GRAL GHSKWITALSWEPLHANPECRYVASSSKDGSVRVWDTTAGRCER LTGH QSVTC
Sbjct: 193 GRALTGHSKWITALSWEPLHANPECRYVASSSKDGSVRVWDTTAGRCERTLTGHAQSVTC 252
Query: 781 LRWGGDGLLYSASQDRTIKVWRAHDGVLCRTL 876
LRWGGDGLLYSASQDRTIKVWRAHDGVLCRTL
Sbjct: 253 LRWGGDGLLYSASQDRTIKVWRAHDGVLCRTL 284
Score = 80.1 bits (196), Expect = 2e-15
Identities = 57/211 (27%), Positives = 88/211 (41%), Gaps = 43/211 (20%)
Frame = +1
Query: 340 RCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISW 519
RC +L GH+++V + + G L S S D T++ W T QGH HWV +++
Sbjct: 238 RCERTLTGHAQSVTCLRWGGDG-LLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMAL 296
Query: 520 SPD------------------------------------------GKKLASGCKNGQILL 573
S D ++L SG + + L
Sbjct: 297 STDYALRTGAFEPAEASVNAQDLRGSLQELKERALSRYNLVRGQGPERLVSGSDDFTLFL 356
Query: 574 WDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSVRVWDTTAGRCERIL 753
W P+ K+ + GH I + + +P+ R +AS+S D S+++WD G+ L
Sbjct: 357 WSPAEDKKPLARMTGHQALINQVVF-----SPDSRVIASASFDKSIKLWDGRTGKYLASL 411
Query: 754 TGHTQSVTCLRWGGDG-LLYSASQDRTIKVW 843
GH +V + W D LL S S D T+KVW
Sbjct: 412 RGHVAAVYQIAWSADSRLLVSGSSDSTLKVW 442
Score = 78.2 bits (191), Expect = 9e-15
Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 2/147 (1%)
Frame = +1
Query: 412 LASGSGDTTVRFWDLSTET-PHFTCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPST 588
L SGS D T+ W + + P GH+ + + +SPD + +AS + I LWD T
Sbjct: 345 LVSGSDDFTLFLWSPAEDKKPLARMTGHQALINQVVFSPDSRVIASASFDKSIKLWDGRT 404
Query: 589 GKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQ 768
GK + +L GH + ++W + + R + S S D +++VWD A + L GH
Sbjct: 405 GKYLA-SLRGHVAAVYQIAW-----SADSRLLVSGSSDSTLKVWDVKAQKLSTDLPGHAD 458
Query: 769 SVTCLRWGGDG-LLYSASQDRTIKVWR 846
V + W DG + S +D+ +++WR
Sbjct: 459 EVYAVDWSPDGQRVASGGKDKCLRIWR 485
Score = 72.4 bits (176), Expect = 5e-13
Identities = 39/122 (31%), Positives = 62/122 (50%)
Frame = +1
Query: 355 LEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGK 534
+ GH + V FSP + +AS S D +++ WD T + +GH V I+WS D +
Sbjct: 369 MTGHQALINQVVFSPDSRVIASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWSADSR 428
Query: 535 KLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSVR 714
L SG + + +WD K + L GH+ + A+ W +P+ + VAS KD +R
Sbjct: 429 LLVSGSSDSTLKVWDVKAQK-LSTDLPGHADEVYAVDW-----SPDGQRVASGGKDKCLR 482
Query: 715 VW 720
+W
Sbjct: 483 IW 484
Score = 65.9 bits (159), Expect = 5e-11
Identities = 29/76 (38%), Positives = 46/76 (60%)
Frame = +1
Query: 349 SSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPD 528
+SL GH AV +A+S + L SGS D+T++ WD+ + GH V ++ WSPD
Sbjct: 409 ASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQKLSTDLPGHADEVYAVDWSPD 468
Query: 529 GKKLASGCKNGQILLW 576
G+++ASG K+ + +W
Sbjct: 469 GQRVASGGKDKCLRIW 484
>ref|NP_001098945.1| WD repeat-containing protein 5 [Bos taurus].
Length = 334
Score = 112 bits (280), Expect = 4e-25
Identities = 59/176 (33%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Frame = +1
Query: 352 SLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDG 531
+L GH++AV SV FSP G++LAS S D ++ W T GH+ + ++WS D
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 532 KKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSV 711
L S + + +WD S+GK + + L GHS ++ ++ NP+ + S S D SV
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCL-KTLKGHSNYVFCCNF-----NPQSNLIVSGSFDESV 153
Query: 712 RVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVWRAHDGVLCRTL 876
R+WD G+C + L H+ V+ + + DG L+ S+S D ++W G +TL
Sbjct: 154 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 209
Score = 83.2 bits (204), Expect = 3e-16
Identities = 43/172 (25%), Positives = 85/172 (49%), Gaps = 4/172 (2%)
Frame = +1
Query: 340 RCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISW 519
+C +L+GHS V F+P + SGS D +VR WD+ T T H V ++ +
Sbjct: 120 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 179
Query: 520 SPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSK 699
+ DG + S +G +WD ++G+ + + + ++ + + +P +Y+ +++
Sbjct: 180 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF-----SPNGKYILAATL 234
Query: 700 DGSVRVWDTTAGRCERILTGHTQSVTCL----RWGGDGLLYSASQDRTIKVW 843
D ++++WD + G+C + TGH C+ G + S S+D + +W
Sbjct: 235 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 286
Score = 75.5 bits (184), Expect = 6e-14
Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 1/135 (0%)
Frame = +1
Query: 475 FTCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEP 654
FT GH V S+ +SP+G+ LAS + I +W GK + ++GH I+ ++W
Sbjct: 39 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAW-- 95
Query: 655 LHANPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQSVTCLRWG-GDGLLYSASQDRT 831
+ + + S+S D ++++WD ++G+C + L GH+ V C + L+ S S D +
Sbjct: 96 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 152
Query: 832 IKVWRAHDGVLCRTL 876
+++W G +TL
Sbjct: 153 VRIWDVKTGKCLKTL 167
>ref|XP_001788325.2| PREDICTED: WD repeat domain 5 [Bos taurus].
Length = 330
Score = 107 bits (267), Expect = 1e-23
Identities = 57/176 (32%), Positives = 92/176 (52%), Gaps = 1/176 (0%)
Frame = +1
Query: 352 SLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDG 531
+LEGH+EAV SV FSP G++LAS S D + W T +GH + ++WS D
Sbjct: 36 TLEGHTEAVSSVKFSPNGEWLASSSADKVIIIWGAYDGKYEKTLKGHNLEISDVAWSSDS 95
Query: 532 KKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSV 711
+L S + + +WD +GK + + L GHS ++ ++ NP + S S D SV
Sbjct: 96 SRLVSASDDKTLKIWDVRSGKCL-KTLKGHSNYVFCCNF-----NPPSNLIISGSFDESV 149
Query: 712 RVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVWRAHDGVLCRTL 876
++W+ G+C + L+ H+ V+ + + G L+ S S D ++W A G + L
Sbjct: 150 KIWEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGVCRIWDAASGQCLKAL 205
Score = 79.3 bits (194), Expect = 4e-15
Identities = 42/172 (24%), Positives = 84/172 (48%), Gaps = 4/172 (2%)
Frame = +1
Query: 340 RCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISW 519
+C +L+GHS V F+P + SGS D +V+ W++ T T H V ++ +
Sbjct: 116 KCLKTLKGHSNYVFCCNFNPPSNLIISGSFDESVKIWEVKTGKCLKTLSAHSDPVSAVHF 175
Query: 520 SPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSK 699
+ G + SG +G +WD ++G+ + + + ++ + + +P +Y+ ++
Sbjct: 176 NCSGSLIVSGSYDGVCRIWDAASGQCLKALVDDDNPPVSFVKF-----SPNGKYILIATL 230
Query: 700 DGSVRVWDTTAGRCERILTGHTQSVTCL----RWGGDGLLYSASQDRTIKVW 843
D ++++WD + GRC + TGH C+ G + S S+D + +W
Sbjct: 231 DNTLKLWDYSRGRCLKTYTGHKNEKYCVFASFSVTGGKWIVSGSEDNLVYIW 282
Score = 79.0 bits (193), Expect = 5e-15
Identities = 42/135 (31%), Positives = 73/135 (54%), Gaps = 1/135 (0%)
Frame = +1
Query: 475 FTCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEP 654
FT +GH V S+ +SP+G+ LAS + I++W GK + L GH+ I+ ++W
Sbjct: 35 FTLEGHTEAVSSVKFSPNGEWLASSSADKVIIIWGAYDGK-YEKTLKGHNLEISDVAW-- 91
Query: 655 LHANPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQSVTCLRWG-GDGLLYSASQDRT 831
+ + + S+S D ++++WD +G+C + L GH+ V C + L+ S S D +
Sbjct: 92 ---SSDSSRLVSASDDKTLKIWDVRSGKCLKTLKGHSNYVFCCNFNPPSNLIISGSFDES 148
Query: 832 IKVWRAHDGVLCRTL 876
+K+W G +TL
Sbjct: 149 VKIWEVKTGKCLKTL 163
Score = 60.5 bits (145), Expect = 2e-09
Identities = 45/174 (25%), Positives = 81/174 (46%), Gaps = 6/174 (3%)
Frame = +1
Query: 340 RCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLST-ETPHFTCQGHRHWVLSIS 516
+C +L HS+ V +V F+ +G + SGS D R WD ++ + V +
Sbjct: 158 KCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGVCRIWDAASGQCLKALVDDDNPPVSFVK 217
Query: 517 WSPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHS--KWITALSWEPLHANPECRYVAS 690
+SP+GK + + + LWD S G+ + + GH K+ S+ +++ S
Sbjct: 218 FSPNGKYILIATLDNTLKLWDYSRGRCL-KTYTGHKNEKYCVFASFSVTGG----KWIVS 272
Query: 691 SSKDGSVRVWDTTAGRCERILTGHTQSV-TCLRWGGDGLLYSAS--QDRTIKVW 843
S+D V +W+ + L GHT V + + ++ SA+ D+T+K+W
Sbjct: 273 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISAACHPTENIIASAALGNDKTVKLW 326
>ref|NP_001157418.1| WD repeat-containing protein 38 [Bos taurus].
Length = 296
Score = 99.0 bits (245), Expect = 5e-21
Identities = 59/167 (35%), Positives = 92/167 (55%), Gaps = 3/167 (1%)
Frame = +1
Query: 355 LEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGK 534
L GH V FSP G+ AS S D T+R WD + +GH+ V ++S+S D K
Sbjct: 59 LRGHKGPVRFCRFSPDGRLFASTSCDRTIRLWDATDAKCLQVLKGHQRSVETVSFSHDSK 118
Query: 535 KLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSVR 714
+LASG + +++LW+ +G QV R GH + + + P + +C +A+ S D ++R
Sbjct: 119 QLASGGWDKRVMLWEVQSG-QVLRHFVGHRDSVQSSDFAP---SSDC--LATGSWDSTIR 172
Query: 715 VWDTTAGR---CERILTGHTQSVTCLRWGGDGLLYSASQDRTIKVWR 846
+WD AG + L GH +++CL + GLL S S D+TI +W+
Sbjct: 173 MWDLRAGTPGIFHQELEGHRGNISCLCYSPSGLLASGSWDKTIHIWK 219
Score = 85.5 bits (210), Expect = 6e-17
Identities = 55/159 (34%), Positives = 84/159 (52%), Gaps = 4/159 (2%)
Frame = +1
Query: 361 GHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETP---HFTCQGHRHWVLSISWSPDG 531
GH ++V S F+P+ LA+GS D+T+R WDL TP H +GHR + + +SP G
Sbjct: 145 GHRDSVQSSDFAPSSDCLATGSWDSTIRMWDLRAGTPGIFHQELEGHRGNISCLCYSPSG 204
Query: 532 KKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSV 711
LASG + I +W PST + + L GH W+ ++++ +P+ + +AS+ V
Sbjct: 205 L-LASGSWDKTIHIWKPST-RSLLIQLKGHITWVKSIAF-----SPDGQQLASAGYSHMV 257
Query: 712 RVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQD 825
+VWD G+C L G + DG LL S + D
Sbjct: 258 KVWDCNTGKCTETLKGVLNVAHACAFMPDGKLLVSGAVD 296
Score = 75.1 bits (183), Expect = 8e-14
Identities = 55/182 (30%), Positives = 80/182 (43%), Gaps = 3/182 (1%)
Frame = +1
Query: 340 RCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISW 519
+C L+GH +V +V+FS K LASG D V W++ + GHR V S +
Sbjct: 96 KCLQVLKGHQRSVETVSFSHDSKQLASGGWDKRVMLWEVQSGQVLRHFVGHRDSVQSSDF 155
Query: 520 SPDGKKLASGCKNGQILLWDPSTGKQ--VGRALAGHSKWITALSWEPLHANPECRYVASS 693
+P LA+G + I +WD G + L GH I+ L + P +AS
Sbjct: 156 APSSDCLATGSWDSTIRMWDLRAGTPGIFHQELEGHRGNISCLCYSP------SGLLASG 209
Query: 694 SKDGSVRVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVWRAHDGVLCR 870
S D ++ +W + L GH V + + DG L SA +KVW + G
Sbjct: 210 SWDKTIHIWKPSTRSLLIQLKGHITWVKSIAFSPDGQQLASAGYSHMVKVWDCNTGKCTE 269
Query: 871 TL 876
TL
Sbjct: 270 TL 271
>ref|NP_001092501.1| WD repeat-containing protein 51B [Bos taurus].
Length = 478
Score = 97.4 bits (241), Expect = 1e-20
Identities = 56/163 (34%), Positives = 89/163 (54%), Gaps = 1/163 (0%)
Frame = +1
Query: 358 EGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGKK 537
+GH A+ SV FSP GK LA+GS DT + W L + F GH+ + S+ +SP G
Sbjct: 15 KGHKAAITSVDFSPNGKQLATGSWDTFLMLWSLRPQARAFRYVGHKDVITSVQFSPLGNL 74
Query: 538 LASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSVRV 717
LAS ++ I LW P + H+ + ++ + + + +++AS+S+D S++V
Sbjct: 75 LASASRDRTIRLWIPDK-RGKSSEFKAHTAPVRSVDF-----SADGQFLASASEDKSIKV 128
Query: 718 WDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVW 843
W+ R L HT V C ++ DG L+ S S+D+TIK+W
Sbjct: 129 WNMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIW 171
Score = 84.3 bits (207), Expect = 1e-16
Identities = 52/178 (29%), Positives = 92/178 (51%), Gaps = 1/178 (0%)
Frame = +1
Query: 346 TSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSP 525
+S + H+ V SV FS G++LAS S D +++ W++ + ++ H HWV +SP
Sbjct: 95 SSEFKAHTAPVRSVDFSADGQFLASASEDKSIKVWNMYRQRFLYSLYRHTHWVRCAKFSP 154
Query: 526 DGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDG 705
DG+ + S ++ I +WD +T KQ + S ++ ++ + N C +AS+ D
Sbjct: 155 DGRLIVSCSEDKTIKIWD-TTNKQ---CVNNFSDFVGFANFVAFNPNGTC--IASAGSDH 208
Query: 706 SVRVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVWRAHDGVLCRTL 876
+V++WD + + H+ V C+ + G L +AS D T+K+ +G L TL
Sbjct: 209 TVKIWDIRVNKLLQHYQVHSGGVNCVSFHPSGNYLITASSDGTLKILDLLEGRLIYTL 266
Score = 55.1 bits (131), Expect = 8e-08
Identities = 29/81 (35%), Positives = 43/81 (53%)
Frame = +1
Query: 334 VTRCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSI 513
V + + HS V V+F P+G YL + S D T++ DL +T QGH V ++
Sbjct: 217 VNKLLQHYQVHSGGVNCVSFHPSGNYLITASSDGTLKILDLLEGRLIYTLQGHTGPVFTV 276
Query: 514 SWSPDGKKLASGCKNGQILLW 576
S+S G+ SG + Q+LLW
Sbjct: 277 SFSKGGELFTSGGADAQVLLW 297
>ref|NP_777088.1| platelet-activating factor acetylhydrolase IB subunit alpha [Bos
taurus].
Length = 410
Score = 97.4 bits (241), Expect = 1e-20
Identities = 58/196 (29%), Positives = 90/196 (45%), Gaps = 21/196 (10%)
Frame = +1
Query: 352 SLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDG 531
+L+GH+++V ++F +GK LAS S D T++ WD T GH H V S++ P+G
Sbjct: 145 TLKGHTDSVEDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNG 204
Query: 532 KKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSV 711
+ S ++ I +W+ TG V + GH +W+ + N + +AS S D +V
Sbjct: 205 DHIVSASRDKTIKMWEVQTGYCV-KTFTGHREWV-----RMVRPNQDGTLIASCSNDQTV 258
Query: 712 RVWDTTAGRCERILTGHTQSVTCLRWGGDG---------------------LLYSASQDR 828
RVW C+ L H V C+ W + L S S+D+
Sbjct: 259 RVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 318
Query: 829 TIKVWRAHDGVLCRTL 876
TIK+W G+ TL
Sbjct: 319 TIKMWDVSTGMCLMTL 334
Score = 91.3 bits (225), Expect = 1e-18
Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 1/165 (0%)
Frame = +1
Query: 352 SLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDG 531
+L GH V V F P + S S D T++ WD T T +GH V IS+ G
Sbjct: 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVEDISFDHSG 162
Query: 532 KKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSV 711
K LAS + I LWD G + R + GH +++++ P ++ S+S+D ++
Sbjct: 163 KLLASCSADMTIKLWD-FQGFECIRTMHGHDHNVSSVA-----IMPNGDHIVSASRDKTI 216
Query: 712 RVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVW 843
++W+ G C + TGH + V +R DG L+ S S D+T++VW
Sbjct: 217 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
Score = 88.6 bits (218), Expect = 7e-18
Identities = 54/184 (29%), Positives = 85/184 (46%), Gaps = 17/184 (9%)
Frame = +1
Query: 343 CTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWS 522
C ++ GH V SVA P G ++ S S D T++ W++ T T GHR WV + +
Sbjct: 184 CIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN 243
Query: 523 PDGKKLASGCKNGQ-ILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECR------- 678
DG +AS C N Q + +W +T K+ L H + +SW P +
Sbjct: 244 QDGTLIAS-CSNDQTVRVWVVAT-KECKAELREHEHVVECISWAPESSYSSISEATGSET 301
Query: 679 --------YVASSSKDGSVRVWDTTAGRCERILTGHTQSVT-CLRWGGDGLLYSASQDRT 831
++ S S+D ++++WD + G C L GH V L G + S + D+T
Sbjct: 302 KKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT 361
Query: 832 IKVW 843
++VW
Sbjct: 362 LRVW 365
Score = 82.8 bits (203), Expect = 4e-16
Identities = 57/188 (30%), Positives = 86/188 (45%), Gaps = 21/188 (11%)
Frame = +1
Query: 343 CTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWS 522
C + GH E V V + G +AS S D TVR W ++T+ + H H V ISW+
Sbjct: 226 CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWA 285
Query: 523 PD--------------------GKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITAL 642
P+ G L SG ++ I +WD STG + L GH W+ +
Sbjct: 286 PESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL-MTLVGHDNWVRGV 344
Query: 643 SWEPLHANPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSAS 819
+ H+ +++ S + D ++RVWD RC + L H VT L + + + S
Sbjct: 345 LF---HSGG--KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGS 399
Query: 820 QDRTIKVW 843
D+T+KVW
Sbjct: 400 VDQTVKVW 407
Score = 62.4 bits (150), Expect = 5e-10
Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 2/135 (1%)
Frame = +1
Query: 475 FTCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEP 654
+ GHR V + + P + S ++ I +WD TG R L GH+ + +S++
Sbjct: 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG-DFERTLKGHTDSVEDISFD- 159
Query: 655 LHANPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQSVT--CLRWGGDGLLYSASQDR 828
H+ + +AS S D ++++WD C R + GH +V+ + GD ++ SAS+D+
Sbjct: 160 -HSG---KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIV-SASRDK 214
Query: 829 TIKVWRAHDGVLCRT 873
TIK+W G +T
Sbjct: 215 TIKMWEVQTGYCVKT 229
Score = 61.6 bits (148), Expect = 9e-10
Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 20/153 (13%)
Frame = +1
Query: 325 VRAVTRCTSSLEGHSEAVISVAFSPT--------------------GKYLASGSGDTTVR 444
V A C + L H V ++++P G +L SGS D T++
Sbjct: 262 VVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 321
Query: 445 FWDLSTETPHFTCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHS 624
WD+ST T GH +WV + + GK + S + + +WD K+ + L H
Sbjct: 322 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD-YKNKRCMKTLNAHE 380
Query: 625 KWITALSWEPLHANPECRYVASSSKDGSVRVWD 723
++T+L + + YV + S D +V+VW+
Sbjct: 381 HFVTSLDF-----HKTAPYVVTGSVDQTVKVWE 408
>ref|XP_001251626.3| PREDICTED: WD repeat domain 51B-like, partial [Bos taurus].
Length = 371
Score = 97.4 bits (241), Expect = 1e-20
Identities = 56/163 (34%), Positives = 89/163 (54%), Gaps = 1/163 (0%)
Frame = +1
Query: 358 EGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGKK 537
+GH A+ SV FSP GK LA+GS DT + W L + F GH+ + S+ +SP G
Sbjct: 15 KGHKAAITSVDFSPNGKQLATGSWDTFLMLWSLRPQARAFRYVGHKDVITSVQFSPLGNL 74
Query: 538 LASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSVRV 717
LAS ++ I LW P + H+ + ++ + + + +++AS+S+D S++V
Sbjct: 75 LASASRDRTIRLWIPDK-RGKSSEFKAHTAPVRSVDF-----SADGQFLASASEDKSIKV 128
Query: 718 WDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVW 843
W+ R L HT V C ++ DG L+ S S+D+TIK+W
Sbjct: 129 WNMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIW 171
Score = 84.3 bits (207), Expect = 1e-16
Identities = 52/178 (29%), Positives = 92/178 (51%), Gaps = 1/178 (0%)
Frame = +1
Query: 346 TSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSP 525
+S + H+ V SV FS G++LAS S D +++ W++ + ++ H HWV +SP
Sbjct: 95 SSEFKAHTAPVRSVDFSADGQFLASASEDKSIKVWNMYRQRFLYSLYRHTHWVRCAKFSP 154
Query: 526 DGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDG 705
DG+ + S ++ I +WD +T KQ + S ++ ++ + N C +AS+ D
Sbjct: 155 DGRLIVSCSEDKTIKIWD-TTNKQ---CVNNFSDFVGFANFVAFNPNGTC--IASAGSDH 208
Query: 706 SVRVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVWRAHDGVLCRTL 876
+V++WD + + H+ V C+ + G L +AS D T+K+ +G L TL
Sbjct: 209 TVKIWDIRVNKLLQHYQVHSGGVNCVSFHPSGNYLITASSDGTLKILDLLEGRLIYTL 266
Score = 55.1 bits (131), Expect = 8e-08
Identities = 29/81 (35%), Positives = 43/81 (53%)
Frame = +1
Query: 334 VTRCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSI 513
V + + HS V V+F P+G YL + S D T++ DL +T QGH V ++
Sbjct: 217 VNKLLQHYQVHSGGVNCVSFHPSGNYLITASSDGTLKILDLLEGRLIYTLQGHTGPVFTV 276
Query: 514 SWSPDGKKLASGCKNGQILLW 576
S+S G+ SG + Q+LLW
Sbjct: 277 SFSKGGELFTSGGADAQVLLW 297
>ref|NP_001069398.1| WD repeat-containing protein 69 [Bos taurus].
Length = 415
Score = 97.1 bits (240), Expect = 2e-20
Identities = 49/172 (28%), Positives = 94/172 (54%), Gaps = 2/172 (1%)
Frame = +1
Query: 340 RCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISW 519
+C + GH+ ++ ++F+P +A+GS DTT + WD+ + FT GH ++S+S+
Sbjct: 168 KCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQSGEEVFTLTGHSAEIISLSF 227
Query: 520 SPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSK 699
+ G ++ +G + + +W+ TG++V L GH I++ + N +C + + S
Sbjct: 228 NTSGNRIITGSFDHTVTVWEADTGRKV-YTLIGHCAEISSAVF-----NWDCSLILTGSM 281
Query: 700 DGSVRVWDTTAGRCERILTGHTQSV--TCLRWGGDGLLYSASQDRTIKVWRA 849
D + ++WD G+C LTGH + +C + G L+ +AS D T +++ A
Sbjct: 282 DKTCKLWDAVNGKCVATLTGHDDEILDSCFDYTGK-LIATASADGTARIFSA 332
Score = 91.3 bits (225), Expect = 1e-18
Identities = 57/177 (32%), Positives = 92/177 (51%), Gaps = 2/177 (1%)
Frame = +1
Query: 352 SLEGHSEAVISVAFS-PTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPD 528
+LEGH V ++AF+ P G +A+GS D T + W + T + T +GH ++ +S++P
Sbjct: 129 TLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQ 188
Query: 529 GKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGS 708
+A+G + LWD +G++V L GHS I +LS+ N + + S D +
Sbjct: 189 STLVATGSMDTTAKLWDIQSGEEV-FTLTGHSAEIISLSF-----NTSGNRIITGSFDHT 242
Query: 709 VRVWDTTAGRCERILTGHTQSVTCLRWGGD-GLLYSASQDRTIKVWRAHDGVLCRTL 876
V VW+ GR L GH ++ + D L+ + S D+T K+W A +G TL
Sbjct: 243 VTVWEADTGRKVYTLIGHCAEISSAVFNWDCSLILTGSMDKTCKLWDAVNGKCVATL 299
Score = 85.5 bits (210), Expect = 6e-17
Identities = 56/176 (31%), Positives = 87/176 (49%), Gaps = 2/176 (1%)
Frame = +1
Query: 355 LEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISW-SPDG 531
L H + +VA + +G +GS D T + WD ++ T +GHR+ V +I++ +P G
Sbjct: 88 LRAHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELHTLEGHRNVVYAIAFNNPYG 147
Query: 532 KKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSV 711
K+A+G + LW TGK GH+ I LS+ NP+ VA+ S D +
Sbjct: 148 DKIATGSFDKTCKLWSVETGK-CYHTFRGHTAEIVCLSF-----NPQSTLVATGSMDTTA 201
Query: 712 RVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVWRAHDGVLCRTL 876
++WD +G LTGH+ + L + G + + S D T+ VW A G TL
Sbjct: 202 KLWDIQSGEEVFTLTGHSAEIISLSFNTSGNRIITGSFDHTVTVWEADTGRKVYTL 257
Score = 75.1 bits (183), Expect = 8e-14
Identities = 46/167 (27%), Positives = 81/167 (48%), Gaps = 2/167 (1%)
Frame = +1
Query: 352 SLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDG 531
+L GH + S F+ + +GS D T + WD T GH +L + G
Sbjct: 256 TLIGHCAEISSAVFNWDCSLILTGSMDKTCKLWDAVNGKCVATLTGHDDEILDSCFDYTG 315
Query: 532 KKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSV 711
K +A+ +G ++ +T + V + L GH I+ +S+ NP+ + + S D +
Sbjct: 316 KLIATASADGTARIFSAATRECVTK-LEGHEGEISKISF-----NPQGNRLLTGSSDKTA 369
Query: 712 RVWDTTAGRCERILTGHTQSV--TCLRWGGDGLLYSASQDRTIKVWR 846
R+WD G+C ++L GHT + + GD ++ + S+D T ++WR
Sbjct: 370 RIWDAQTGQCLQVLEGHTDEIFSCAFNYKGD-IIITGSKDNTCRIWR 415
Score = 69.3 bits (168), Expect = 4e-12
Identities = 37/127 (29%), Positives = 65/127 (51%)
Frame = +1
Query: 340 RCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISW 519
+C ++L GH + ++ F TGK +A+ S D T R + +T +GH + IS+
Sbjct: 294 KCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFSAATRECVTKLEGHEGEISKISF 353
Query: 520 SPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSK 699
+P G +L +G + +WD TG Q + L GH+ I + ++ N + + + SK
Sbjct: 354 NPQGNRLLTGSSDKTARIWDAQTG-QCLQVLEGHTDEIFSCAF-----NYKGDIIITGSK 407
Query: 700 DGSVRVW 720
D + R+W
Sbjct: 408 DNTCRIW 414
Score = 55.5 bits (132), Expect = 6e-08
Identities = 25/82 (30%), Positives = 40/82 (48%)
Frame = +1
Query: 331 AVTRCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLS 510
A C + LEGH + ++F+P G L +GS D T R WD T +GH + S
Sbjct: 333 ATRECVTKLEGHEGEISKISFNPQGNRLLTGSSDKTARIWDAQTGQCLQVLEGHTDEIFS 392
Query: 511 ISWSPDGKKLASGCKNGQILLW 576
+++ G + +G K+ +W
Sbjct: 393 CAFNYKGDIIITGSKDNTCRIW 414
>ref|NP_001069375.1| ribosome biogenesis protein WDR12 [Bos taurus].
Length = 423
Score = 92.4 bits (228), Expect = 5e-19
Identities = 57/168 (33%), Positives = 87/168 (51%), Gaps = 3/168 (1%)
Frame = +1
Query: 352 SLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDG 531
+L GH EA+ SV +S + + S S D T++ WD+ + + T G++ + IS+SP
Sbjct: 252 TLSGHKEAISSVLWSDAEE-ICSASWDHTIKVWDVESGSLKSTLTGNKVFNC-ISYSPLC 309
Query: 532 KKLASGCKNGQILLWDPST--GKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDG 705
K+LASG + I LWDP T G V +L H+ W+T++ W P H + + S S D
Sbjct: 310 KRLASGSTDRHIRLWDPRTKDGSLVSLSLTSHTGWVTSVKWSPTHE----QQLISGSLDN 365
Query: 706 SVRVWDTTAGRCERI-LTGHTQSVTCLRWGGDGLLYSASQDRTIKVWR 846
V++WDT + + L H V + W GLL S D + +R
Sbjct: 366 MVKLWDTRSCKAPLYDLAAHEDKVLSVDWTDSGLLLSGGADNKLYSYR 413
>ref|NP_001069717.1| F-box/WD repeat-containing protein 7 [Bos taurus].
Length = 627
Score = 91.7 bits (226), Expect = 8e-19
Identities = 59/178 (33%), Positives = 87/178 (48%)
Frame = +1
Query: 343 CTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWS 522
C +L GH+ V + K + SGS D T+R WD+ T GH V + +
Sbjct: 373 CIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY- 429
Query: 523 PDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKD 702
DG+++ SG + + +WDP T + L GH+ + +L ++ +H V S S D
Sbjct: 430 -DGRRVVSGAYDFMVKVWDPETETCL-HTLQGHTNRVYSLQFDGIH-------VVSGSLD 480
Query: 703 GSVRVWDTTAGRCERILTGHTQSVTCLRWGGDGLLYSASQDRTIKVWRAHDGVLCRTL 876
S+RVWD G C LTGH QS+T D +L S + D T+K+W G +TL
Sbjct: 481 TSIRVWDVETGNCIHTLTGH-QSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTL 537
Score = 86.3 bits (212), Expect = 3e-17
Identities = 57/182 (31%), Positives = 88/182 (48%), Gaps = 3/182 (1%)
Frame = +1
Query: 340 RCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISW 519
+C L GH AV V + G+ + SG+ D V+ WD TET T QGH + V S+ +
Sbjct: 412 QCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF 469
Query: 520 SPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSK 699
DG + SG + I +WD TG + L GH + + + + S +
Sbjct: 470 --DGIHVVSGSLDTSIRVWDVETGNCI-HTLTGHQSLTSGMELKD-------NILVSGNA 519
Query: 700 DGSVRVWDTTAGRCERILTG---HTQSVTCLRWGGDGLLYSASQDRTIKVWRAHDGVLCR 870
D +V++WD G+C + L G H +VTCL++ + ++S D T+K+W G R
Sbjct: 520 DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF-NKNFVITSSDDGTVKLWDLKTGEFIR 578
Query: 871 TL 876
L
Sbjct: 579 NL 580
Score = 73.2 bits (178), Expect = 3e-13
Identities = 52/176 (29%), Positives = 83/176 (47%), Gaps = 2/176 (1%)
Frame = +1
Query: 355 LEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGK 534
L+GH + VI+ G + SGS D T++ W T T GH V WS +
Sbjct: 296 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQMR 350
Query: 535 K--LASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGS 708
+ SG + + +W+ TG+ + L GH+ + + LH + V S S+D +
Sbjct: 351 DNIIISGSTDRTLKVWNAETGECI-HTLYGHTSTVRCMH---LHE----KRVVSGSRDAT 402
Query: 709 VRVWDTTAGRCERILTGHTQSVTCLRWGGDGLLYSASQDRTIKVWRAHDGVLCRTL 876
+RVWD G+C +L GH +V C+++ G ++ S + D +KVW TL
Sbjct: 403 LRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVV-SGAYDFMVKVWDPETETCLHTL 457
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,860,627
Number of extensions: 1215931
Number of successful extensions: 7584
Number of sequences better than 1.0e-05: 168
Number of HSP's gapped: 6414
Number of HSP's successfully gapped: 433
Length of query: 292
Length of database: 17,681,374
Length adjustment: 101
Effective length of query: 191
Effective length of database: 14,339,486
Effective search space: 2738841826
Effective search space used: 2738841826
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014089
(876 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_548262.2| PREDICTED: similar to Notchless homolog 1 (WD-r... 472 e-133
Alignment gi|XP_850117.1| PREDICTED: similar to WD repeat domain 5 [Canis... 104 1e-22
Alignment gi|XP_534593.2| PREDICTED: similar to CG7568-PA [Canis familiar... 97 2e-20
Alignment gi|XP_537775.2| PREDICTED: similar to platelet-activating facto... 97 2e-20
Alignment gi|XP_854482.1| PREDICTED: similar to platelet-activating facto... 97 2e-20
Alignment gi|XP_868508.1| PREDICTED: similar to platelet-activating facto... 97 2e-20
Alignment gi|XP_868519.1| PREDICTED: similar to platelet-activating facto... 96 6e-20
Alignment gi|XP_536036.2| PREDICTED: similar to WD-repeat protein 12 (YTM... 94 2e-19
Alignment gi|XP_859289.1| PREDICTED: similar to WD-repeat protein 12 (YTM... 94 2e-19
Alignment gi|XP_532646.2| PREDICTED: similar to WD repeat domain 51B [Can... 93 3e-19
>ref|XP_548262.2| PREDICTED: similar to Notchless homolog 1 (WD-repeat protein
HUSSY-07) [Canis familiaris].
Length = 468
Score = 472 bits (1214), Expect = e-133
Identities = 224/234 (95%), Positives = 228/234 (97%)
Frame = +1
Query: 175 ALLAQEDPLPLAFYVHDAEIVSSLGKTLESQAVETEKVLDIIYQPQAVFKVRAVTRCTSS 354
A+ QEDPLPLAFYVHDAEI SSLGKTLESQAVETEKVLDIIYQPQA+F+VRAVTRCTSS
Sbjct: 36 AIALQEDPLPLAFYVHDAEITSSLGKTLESQAVETEKVLDIIYQPQAIFRVRAVTRCTSS 95
Query: 355 LEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGK 534
LEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGK
Sbjct: 96 LEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGK 155
Query: 535 KLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSVR 714
LASGCKNGQILLWDPSTGKQVGR LAGHSKWIT LSWEPLHANPECRY+ASSSKDGSVR
Sbjct: 156 TLASGCKNGQILLWDPSTGKQVGRVLAGHSKWITGLSWEPLHANPECRYMASSSKDGSVR 215
Query: 715 VWDTTAGRCERILTGHTQSVTCLRWGGDGLLYSASQDRTIKVWRAHDGVLCRTL 876
VWDTTAGRCERILTGHTQSVTCLRWGGDGLLYSASQDRTIKVWRAHDGVLCRTL
Sbjct: 216 VWDTTAGRCERILTGHTQSVTCLRWGGDGLLYSASQDRTIKVWRAHDGVLCRTL 269
Score = 78.2 bits (191), Expect = 1e-14
Identities = 56/211 (26%), Positives = 87/211 (41%), Gaps = 43/211 (20%)
Frame = +1
Query: 340 RCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISW 519
RC L GH+++V + + G L S S D T++ W T QGH HWV +++
Sbjct: 223 RCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMAL 281
Query: 520 SPD------------------------------------------GKKLASGCKNGQILL 573
S D ++L SG + + +
Sbjct: 282 STDYALRTGAFEPAEASINAQDLQGSLQELKDRALRRYNLVRGQGPERLVSGSDDFTLFM 341
Query: 574 WDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSVRVWDTTAGRCERIL 753
W P+ K+ + GH I + + +P+ R +AS+S D S+++WD G+ L
Sbjct: 342 WSPAEDKKPLARMTGHQALINQVLF-----SPDSRIIASASFDKSIKLWDGRTGKYLASL 396
Query: 754 TGHTQSVTCLRWGGDG-LLYSASQDRTIKVW 843
GH +V + W D LL S S D T+KVW
Sbjct: 397 RGHVAAVYQIAWSADSRLLVSGSSDSTLKVW 427
Score = 70.5 bits (171), Expect = 2e-12
Identities = 43/145 (29%), Positives = 72/145 (49%), Gaps = 2/145 (1%)
Frame = +1
Query: 412 LASGSGDTTVRFWDLSTET-PHFTCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPST 588
L SGS D T+ W + + P GH+ + + +SPD + +AS + I LWD T
Sbjct: 330 LVSGSDDFTLFMWSPAEDKKPLARMTGHQALINQVLFSPDSRIIASASFDKSIKLWDGRT 389
Query: 589 GKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQ 768
GK + +L GH + ++W + + R + S S D +++VWD A + L GH
Sbjct: 390 GKYLA-SLRGHVAAVYQIAW-----SADSRLLVSGSSDSTLKVWDVKAQKLAADLPGHAD 443
Query: 769 SVTCLRWGGDG-LLYSASQDRTIKV 840
V + W DG + S +D+ +++
Sbjct: 444 EVYAVDWSPDGQRVASGGKDKCLRM 468
Score = 67.0 bits (162), Expect = 2e-11
Identities = 38/121 (31%), Positives = 61/121 (50%)
Frame = +1
Query: 355 LEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGK 534
+ GH + V FSP + +AS S D +++ WD T + +GH V I+WS D +
Sbjct: 354 MTGHQALINQVLFSPDSRIIASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWSADSR 413
Query: 535 KLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSVR 714
L SG + + +WD K + L GH+ + A+ W +P+ + VAS KD +R
Sbjct: 414 LLVSGSSDSTLKVWDVKAQK-LAADLPGHADEVYAVDW-----SPDGQRVASGGKDKCLR 467
Query: 715 V 717
+
Sbjct: 468 M 468
Score = 62.4 bits (150), Expect = 5e-10
Identities = 28/70 (40%), Positives = 43/70 (61%)
Frame = +1
Query: 349 SSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPD 528
+SL GH AV +A+S + L SGS D+T++ WD+ + GH V ++ WSPD
Sbjct: 394 ASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQKLAADLPGHADEVYAVDWSPD 453
Query: 529 GKKLASGCKN 558
G+++ASG K+
Sbjct: 454 GQRVASGGKD 463
>ref|XP_850117.1| PREDICTED: similar to WD repeat domain 5 [Canis familiaris].
Length = 334
Score = 104 bits (259), Expect = 1e-22
Identities = 55/159 (34%), Positives = 87/159 (54%), Gaps = 1/159 (0%)
Frame = +1
Query: 352 SLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDG 531
+L GH++AV SV FSP G++LAS S D ++ W T GH+ + ++WS D
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 532 KKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSV 711
L S + + +WD S+GK + + L GHS ++ ++ NP+ + S S D SV
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCL-KTLKGHSNYVFCCNF-----NPQSNLIVSGSFDESV 153
Query: 712 RVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQD 825
R+WD G+C + L H+ V+ + + DG L+ S+S D
Sbjct: 154 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 192
Score = 75.5 bits (184), Expect = 6e-14
Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 1/135 (0%)
Frame = +1
Query: 475 FTCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEP 654
FT GH V S+ +SP+G+ LAS + I +W GK + ++GH I+ ++W
Sbjct: 39 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAW-- 95
Query: 655 LHANPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQSVTCLRWG-GDGLLYSASQDRT 831
+ + + S+S D ++++WD ++G+C + L GH+ V C + L+ S S D +
Sbjct: 96 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 152
Query: 832 IKVWRAHDGVLCRTL 876
+++W G +TL
Sbjct: 153 VRIWDVKTGKCLKTL 167
Score = 72.0 bits (175), Expect = 7e-13
Identities = 47/175 (26%), Positives = 80/175 (45%), Gaps = 7/175 (4%)
Frame = +1
Query: 340 RCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISW 519
+C +L+GHS V F+P + SGS D +VR WD+ T T H V ++ +
Sbjct: 120 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 179
Query: 520 SPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEP---LHANPECRYVAS 690
+ DG + S +D GK G A + K I P + +P +Y+ +
Sbjct: 180 NRDGSLIVSSS-------YDGLCGK-TGNAASRCMKLILDDDNPPVSFVKFSPNGKYILA 231
Query: 691 SSKDGSVRVWDTTAGRCERILTGHTQSVTCL----RWGGDGLLYSASQDRTIKVW 843
++ D ++++WD + G+C + TGH C+ G + S S+D + +W
Sbjct: 232 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 286
>ref|XP_534593.2| PREDICTED: similar to CG7568-PA [Canis familiaris].
Length = 415
Score = 97.4 bits (241), Expect = 2e-20
Identities = 50/172 (29%), Positives = 95/172 (55%), Gaps = 2/172 (1%)
Frame = +1
Query: 340 RCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISW 519
+C + GH+ ++ ++F+P +A+GS DTT + WD+ + FT +GH ++S+S+
Sbjct: 168 KCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQSGEEVFTLRGHSAEIISLSF 227
Query: 520 SPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSK 699
+ G ++ +G + + +W+ TG++V L GH I++ + N +C + + S
Sbjct: 228 NTSGDRIVTGSFDHTVAVWEADTGRKV-YTLIGHCAEISSALF-----NWDCSLILTGSM 281
Query: 700 DGSVRVWDTTAGRCERILTGHTQSV--TCLRWGGDGLLYSASQDRTIKVWRA 849
D + +WD + G+C LTGH + +C + G L+ +AS D T +V+ A
Sbjct: 282 DKTCMLWDASNGKCVATLTGHDDEILDSCFDYTGK-LIATASADGTARVFSA 332
Score = 89.4 bits (220), Expect = 4e-18
Identities = 56/177 (31%), Positives = 91/177 (51%), Gaps = 2/177 (1%)
Frame = +1
Query: 352 SLEGHSEAVISVAFS-PTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPD 528
+LEGH V ++AF+ P G +A+GS D T + W + T + T +GH ++ +S++P
Sbjct: 129 TLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQ 188
Query: 529 GKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGS 708
+A+G + LWD +G++V L GHS I +LS+ N + + S D +
Sbjct: 189 STLVATGSMDTTAKLWDIQSGEEV-FTLRGHSAEIISLSF-----NTSGDRIVTGSFDHT 242
Query: 709 VRVWDTTAGRCERILTGHTQSVTCLRWGGD-GLLYSASQDRTIKVWRAHDGVLCRTL 876
V VW+ GR L GH ++ + D L+ + S D+T +W A +G TL
Sbjct: 243 VAVWEADTGRKVYTLIGHCAEISSALFNWDCSLILTGSMDKTCMLWDASNGKCVATL 299
Score = 83.2 bits (204), Expect = 3e-16
Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 2/176 (1%)
Frame = +1
Query: 355 LEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISW-SPDG 531
L H + +VA + +G +GS D T + WD ++ T +GHR+ V +I++ +P G
Sbjct: 88 LRAHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELHTLEGHRNVVYAIAFNNPYG 147
Query: 532 KKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSV 711
K+A+G + LW TGK GH+ I LS+ NP+ VA+ S D +
Sbjct: 148 DKIATGSFDKTCKLWSVETGK-CYHTFRGHTAEIVCLSF-----NPQSTLVATGSMDTTA 201
Query: 712 RVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVWRAHDGVLCRTL 876
++WD +G L GH+ + L + G + + S D T+ VW A G TL
Sbjct: 202 KLWDIQSGEEVFTLRGHSAEIISLSFNTSGDRIVTGSFDHTVAVWEADTGRKVYTL 257
Score = 79.3 bits (194), Expect = 4e-15
Identities = 54/204 (26%), Positives = 89/204 (43%), Gaps = 39/204 (19%)
Frame = +1
Query: 352 SLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDG 531
+L GHS +IS++F+ +G + +GS D TV W+ T +T GH + S ++ D
Sbjct: 214 TLRGHSAEIISLSFNTSGDRIVTGSFDHTVAVWEADTGRKVYTLIGHCAEISSALFNWDC 273
Query: 532 KKLASGCKNGQILLWDPSTGKQVGRALAGHS----------------------------- 624
+ +G + +LWD S GK V L GH
Sbjct: 274 SLILTGSMDKTCMLWDASNGKCVA-TLTGHDDEILDSCFDYTGKLIATASADGTARVFSA 332
Query: 625 ---KWITALSWEP-----LHANPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQSV-- 774
K +T L + NP+ + + S D + R+WD G+C ++L GHT +
Sbjct: 333 ATRKCLTKLEGHEGEISKISFNPQGNRLLTGSADETARIWDAQTGQCLQVLEGHTDEIFS 392
Query: 775 TCLRWGGDGLLYSASQDRTIKVWR 846
+ GD ++ + S+D T ++WR
Sbjct: 393 CAFNYKGD-IIITGSKDNTCRIWR 415
Score = 68.6 bits (166), Expect = 8e-12
Identities = 37/127 (29%), Positives = 65/127 (51%)
Frame = +1
Query: 340 RCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISW 519
+C ++L GH + ++ F TGK +A+ S D T R + +T +GH + IS+
Sbjct: 294 KCVATLTGHDDEILDSCFDYTGKLIATASADGTARVFSAATRKCLTKLEGHEGEISKISF 353
Query: 520 SPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSK 699
+P G +L +G + +WD TG Q + L GH+ I + ++ N + + + SK
Sbjct: 354 NPQGNRLLTGSADETARIWDAQTG-QCLQVLEGHTDEIFSCAF-----NYKGDIIITGSK 407
Query: 700 DGSVRVW 720
D + R+W
Sbjct: 408 DNTCRIW 414
Score = 55.8 bits (133), Expect = 5e-08
Identities = 25/82 (30%), Positives = 41/82 (50%)
Frame = +1
Query: 331 AVTRCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLS 510
A +C + LEGH + ++F+P G L +GS D T R WD T +GH + S
Sbjct: 333 ATRKCLTKLEGHEGEISKISFNPQGNRLLTGSADETARIWDAQTGQCLQVLEGHTDEIFS 392
Query: 511 ISWSPDGKKLASGCKNGQILLW 576
+++ G + +G K+ +W
Sbjct: 393 CAFNYKGDIIITGSKDNTCRIW 414
>ref|XP_537775.2| PREDICTED: similar to platelet-activating factor acetylhydrolase
beta subunit isoform 1 [Canis familiaris].
Length = 372
Score = 97.4 bits (241), Expect = 2e-20
Identities = 58/196 (29%), Positives = 90/196 (45%), Gaps = 21/196 (10%)
Frame = +1
Query: 352 SLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDG 531
+L+GH+++V ++F +GK LAS S D T++ WD T GH H V S++ P+G
Sbjct: 107 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNG 166
Query: 532 KKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSV 711
+ S ++ I +W+ TG V + GH +W+ + N + +AS S D +V
Sbjct: 167 DHIVSASRDKTIKMWEVQTGYCV-KTFTGHREWV-----RMVRPNQDGTLIASCSNDQTV 220
Query: 712 RVWDTTAGRCERILTGHTQSVTCLRWGGDG---------------------LLYSASQDR 828
RVW C+ L H V C+ W + L S S+D+
Sbjct: 221 RVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 280
Query: 829 TIKVWRAHDGVLCRTL 876
TIK+W G+ TL
Sbjct: 281 TIKMWDVSTGMCLMTL 296
Score = 91.7 bits (226), Expect = 8e-19
Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 1/165 (0%)
Frame = +1
Query: 352 SLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDG 531
+L GH V V F P + S S D T++ WD T T +GH V IS+ G
Sbjct: 65 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 124
Query: 532 KKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSV 711
K LAS + I LWD G + R + GH +++++ P ++ S+S+D ++
Sbjct: 125 KLLASCSADMTIKLWD-FQGFECIRTMHGHDHNVSSVA-----IMPNGDHIVSASRDKTI 178
Query: 712 RVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVW 843
++W+ G C + TGH + V +R DG L+ S S D+T++VW
Sbjct: 179 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 223
Score = 88.6 bits (218), Expect = 7e-18
Identities = 54/184 (29%), Positives = 85/184 (46%), Gaps = 17/184 (9%)
Frame = +1
Query: 343 CTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWS 522
C ++ GH V SVA P G ++ S S D T++ W++ T T GHR WV + +
Sbjct: 146 CIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN 205
Query: 523 PDGKKLASGCKNGQ-ILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECR------- 678
DG +AS C N Q + +W +T K+ L H + +SW P +
Sbjct: 206 QDGTLIAS-CSNDQTVRVWVVAT-KECKAELREHEHVVECISWAPESSYSSISEATGSET 263
Query: 679 --------YVASSSKDGSVRVWDTTAGRCERILTGHTQSVT-CLRWGGDGLLYSASQDRT 831
++ S S+D ++++WD + G C L GH V L G + S + D+T
Sbjct: 264 KKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT 323
Query: 832 IKVW 843
++VW
Sbjct: 324 LRVW 327
Score = 82.8 bits (203), Expect = 4e-16
Identities = 57/188 (30%), Positives = 86/188 (45%), Gaps = 21/188 (11%)
Frame = +1
Query: 343 CTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWS 522
C + GH E V V + G +AS S D TVR W ++T+ + H H V ISW+
Sbjct: 188 CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWA 247
Query: 523 PD--------------------GKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITAL 642
P+ G L SG ++ I +WD STG + L GH W+ +
Sbjct: 248 PESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL-MTLVGHDNWVRGV 306
Query: 643 SWEPLHANPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSAS 819
+ H+ +++ S + D ++RVWD RC + L H VT L + + + S
Sbjct: 307 LF---HSGG--KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGS 361
Query: 820 QDRTIKVW 843
D+T+KVW
Sbjct: 362 VDQTVKVW 369
Score = 62.4 bits (150), Expect = 5e-10
Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 2/135 (1%)
Frame = +1
Query: 475 FTCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEP 654
+ GHR V + + P + S ++ I +WD TG R L GH+ + +S++
Sbjct: 64 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG-DFERTLKGHTDSVQDISFD- 121
Query: 655 LHANPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQSVT--CLRWGGDGLLYSASQDR 828
H+ + +AS S D ++++WD C R + GH +V+ + GD ++ SAS+D+
Sbjct: 122 -HSG---KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIV-SASRDK 176
Query: 829 TIKVWRAHDGVLCRT 873
TIK+W G +T
Sbjct: 177 TIKMWEVQTGYCVKT 191
Score = 61.6 bits (148), Expect = 9e-10
Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 20/153 (13%)
Frame = +1
Query: 325 VRAVTRCTSSLEGHSEAVISVAFSPT--------------------GKYLASGSGDTTVR 444
V A C + L H V ++++P G +L SGS D T++
Sbjct: 224 VVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 283
Query: 445 FWDLSTETPHFTCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHS 624
WD+ST T GH +WV + + GK + S + + +WD K+ + L H
Sbjct: 284 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD-YKNKRCMKTLNAHE 342
Query: 625 KWITALSWEPLHANPECRYVASSSKDGSVRVWD 723
++T+L + + YV + S D +V+VW+
Sbjct: 343 HFVTSLDF-----HKTAPYVVTGSVDQTVKVWE 370
>ref|XP_854482.1| PREDICTED: similar to platelet-activating factor acetylhydrolase
beta subunit isoform 2 [Canis familiaris].
Length = 410
Score = 97.4 bits (241), Expect = 2e-20
Identities = 58/196 (29%), Positives = 90/196 (45%), Gaps = 21/196 (10%)
Frame = +1
Query: 352 SLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDG 531
+L+GH+++V ++F +GK LAS S D T++ WD T GH H V S++ P+G
Sbjct: 145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNG 204
Query: 532 KKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSV 711
+ S ++ I +W+ TG V + GH +W+ + N + +AS S D +V
Sbjct: 205 DHIVSASRDKTIKMWEVQTGYCV-KTFTGHREWV-----RMVRPNQDGTLIASCSNDQTV 258
Query: 712 RVWDTTAGRCERILTGHTQSVTCLRWGGDG---------------------LLYSASQDR 828
RVW C+ L H V C+ W + L S S+D+
Sbjct: 259 RVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 318
Query: 829 TIKVWRAHDGVLCRTL 876
TIK+W G+ TL
Sbjct: 319 TIKMWDVSTGMCLMTL 334
Score = 91.7 bits (226), Expect = 8e-19
Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 1/165 (0%)
Frame = +1
Query: 352 SLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDG 531
+L GH V V F P + S S D T++ WD T T +GH V IS+ G
Sbjct: 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 162
Query: 532 KKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSV 711
K LAS + I LWD G + R + GH +++++ P ++ S+S+D ++
Sbjct: 163 KLLASCSADMTIKLWD-FQGFECIRTMHGHDHNVSSVA-----IMPNGDHIVSASRDKTI 216
Query: 712 RVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVW 843
++W+ G C + TGH + V +R DG L+ S S D+T++VW
Sbjct: 217 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
Score = 88.6 bits (218), Expect = 7e-18
Identities = 54/184 (29%), Positives = 85/184 (46%), Gaps = 17/184 (9%)
Frame = +1
Query: 343 CTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWS 522
C ++ GH V SVA P G ++ S S D T++ W++ T T GHR WV + +
Sbjct: 184 CIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN 243
Query: 523 PDGKKLASGCKNGQ-ILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECR------- 678
DG +AS C N Q + +W +T K+ L H + +SW P +
Sbjct: 244 QDGTLIAS-CSNDQTVRVWVVAT-KECKAELREHEHVVECISWAPESSYSSISEATGSET 301
Query: 679 --------YVASSSKDGSVRVWDTTAGRCERILTGHTQSVT-CLRWGGDGLLYSASQDRT 831
++ S S+D ++++WD + G C L GH V L G + S + D+T
Sbjct: 302 KKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT 361
Query: 832 IKVW 843
++VW
Sbjct: 362 LRVW 365
Score = 82.8 bits (203), Expect = 4e-16
Identities = 57/188 (30%), Positives = 86/188 (45%), Gaps = 21/188 (11%)
Frame = +1
Query: 343 CTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWS 522
C + GH E V V + G +AS S D TVR W ++T+ + H H V ISW+
Sbjct: 226 CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWA 285
Query: 523 PD--------------------GKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITAL 642
P+ G L SG ++ I +WD STG + L GH W+ +
Sbjct: 286 PESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL-MTLVGHDNWVRGV 344
Query: 643 SWEPLHANPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSAS 819
+ H+ +++ S + D ++RVWD RC + L H VT L + + + S
Sbjct: 345 LF---HSGG--KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGS 399
Query: 820 QDRTIKVW 843
D+T+KVW
Sbjct: 400 VDQTVKVW 407
Score = 62.4 bits (150), Expect = 5e-10
Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 2/135 (1%)
Frame = +1
Query: 475 FTCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEP 654
+ GHR V + + P + S ++ I +WD TG R L GH+ + +S++
Sbjct: 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG-DFERTLKGHTDSVQDISFD- 159
Query: 655 LHANPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQSVT--CLRWGGDGLLYSASQDR 828
H+ + +AS S D ++++WD C R + GH +V+ + GD ++ SAS+D+
Sbjct: 160 -HSG---KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIV-SASRDK 214
Query: 829 TIKVWRAHDGVLCRT 873
TIK+W G +T
Sbjct: 215 TIKMWEVQTGYCVKT 229
Score = 61.6 bits (148), Expect = 9e-10
Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 20/153 (13%)
Frame = +1
Query: 325 VRAVTRCTSSLEGHSEAVISVAFSPT--------------------GKYLASGSGDTTVR 444
V A C + L H V ++++P G +L SGS D T++
Sbjct: 262 VVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 321
Query: 445 FWDLSTETPHFTCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHS 624
WD+ST T GH +WV + + GK + S + + +WD K+ + L H
Sbjct: 322 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD-YKNKRCMKTLNAHE 380
Query: 625 KWITALSWEPLHANPECRYVASSSKDGSVRVWD 723
++T+L + + YV + S D +V+VW+
Sbjct: 381 HFVTSLDF-----HKTAPYVVTGSVDQTVKVWE 408
>ref|XP_868508.1| PREDICTED: similar to platelet-activating factor acetylhydrolase
beta subunit isoform 3 [Canis familiaris].
Length = 345
Score = 97.4 bits (241), Expect = 2e-20
Identities = 58/196 (29%), Positives = 90/196 (45%), Gaps = 21/196 (10%)
Frame = +1
Query: 352 SLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDG 531
+L+GH+++V ++F +GK LAS S D T++ WD T GH H V S++ P+G
Sbjct: 80 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNG 139
Query: 532 KKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSV 711
+ S ++ I +W+ TG V + GH +W+ + N + +AS S D +V
Sbjct: 140 DHIVSASRDKTIKMWEVQTGYCV-KTFTGHREWV-----RMVRPNQDGTLIASCSNDQTV 193
Query: 712 RVWDTTAGRCERILTGHTQSVTCLRWGGDG---------------------LLYSASQDR 828
RVW C+ L H V C+ W + L S S+D+
Sbjct: 194 RVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 253
Query: 829 TIKVWRAHDGVLCRTL 876
TIK+W G+ TL
Sbjct: 254 TIKMWDVSTGMCLMTL 269
Score = 91.7 bits (226), Expect = 8e-19
Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 1/165 (0%)
Frame = +1
Query: 352 SLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDG 531
+L GH V V F P + S S D T++ WD T T +GH V IS+ G
Sbjct: 38 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 97
Query: 532 KKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSV 711
K LAS + I LWD G + R + GH +++++ P ++ S+S+D ++
Sbjct: 98 KLLASCSADMTIKLWD-FQGFECIRTMHGHDHNVSSVA-----IMPNGDHIVSASRDKTI 151
Query: 712 RVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVW 843
++W+ G C + TGH + V +R DG L+ S S D+T++VW
Sbjct: 152 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 196
Score = 88.6 bits (218), Expect = 7e-18
Identities = 54/184 (29%), Positives = 85/184 (46%), Gaps = 17/184 (9%)
Frame = +1
Query: 343 CTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWS 522
C ++ GH V SVA P G ++ S S D T++ W++ T T GHR WV + +
Sbjct: 119 CIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN 178
Query: 523 PDGKKLASGCKNGQ-ILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECR------- 678
DG +AS C N Q + +W +T K+ L H + +SW P +
Sbjct: 179 QDGTLIAS-CSNDQTVRVWVVAT-KECKAELREHEHVVECISWAPESSYSSISEATGSET 236
Query: 679 --------YVASSSKDGSVRVWDTTAGRCERILTGHTQSVT-CLRWGGDGLLYSASQDRT 831
++ S S+D ++++WD + G C L GH V L G + S + D+T
Sbjct: 237 KKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT 296
Query: 832 IKVW 843
++VW
Sbjct: 297 LRVW 300
Score = 82.8 bits (203), Expect = 4e-16
Identities = 57/188 (30%), Positives = 86/188 (45%), Gaps = 21/188 (11%)
Frame = +1
Query: 343 CTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWS 522
C + GH E V V + G +AS S D TVR W ++T+ + H H V ISW+
Sbjct: 161 CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWA 220
Query: 523 PD--------------------GKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITAL 642
P+ G L SG ++ I +WD STG + L GH W+ +
Sbjct: 221 PESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL-MTLVGHDNWVRGV 279
Query: 643 SWEPLHANPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSAS 819
+ H+ +++ S + D ++RVWD RC + L H VT L + + + S
Sbjct: 280 LF---HSGG--KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGS 334
Query: 820 QDRTIKVW 843
D+T+KVW
Sbjct: 335 VDQTVKVW 342
Score = 62.4 bits (150), Expect = 5e-10
Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 2/135 (1%)
Frame = +1
Query: 475 FTCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEP 654
+ GHR V + + P + S ++ I +WD TG R L GH+ + +S++
Sbjct: 37 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG-DFERTLKGHTDSVQDISFD- 94
Query: 655 LHANPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQSVT--CLRWGGDGLLYSASQDR 828
H+ + +AS S D ++++WD C R + GH +V+ + GD ++ SAS+D+
Sbjct: 95 -HSG---KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIV-SASRDK 149
Query: 829 TIKVWRAHDGVLCRT 873
TIK+W G +T
Sbjct: 150 TIKMWEVQTGYCVKT 164
Score = 61.6 bits (148), Expect = 9e-10
Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 20/153 (13%)
Frame = +1
Query: 325 VRAVTRCTSSLEGHSEAVISVAFSPT--------------------GKYLASGSGDTTVR 444
V A C + L H V ++++P G +L SGS D T++
Sbjct: 197 VVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 256
Query: 445 FWDLSTETPHFTCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHS 624
WD+ST T GH +WV + + GK + S + + +WD K+ + L H
Sbjct: 257 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD-YKNKRCMKTLNAHE 315
Query: 625 KWITALSWEPLHANPECRYVASSSKDGSVRVWD 723
++T+L + + YV + S D +V+VW+
Sbjct: 316 HFVTSLDF-----HKTAPYVVTGSVDQTVKVWE 343
>ref|XP_868519.1| PREDICTED: similar to platelet-activating factor acetylhydrolase
beta subunit isoform 5 [Canis familiaris].
Length = 415
Score = 95.5 bits (236), Expect = 6e-20
Identities = 58/201 (28%), Positives = 90/201 (44%), Gaps = 26/201 (12%)
Frame = +1
Query: 352 SLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDG 531
+L+GH+++V ++F +GK LAS S D T++ WD T GH H V S++ P+G
Sbjct: 145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNG 204
Query: 532 KKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSV 711
+ S ++ I +W+ TG V + GH +W+ + N + +AS S D +V
Sbjct: 205 DHIVSASRDKTIKMWEVQTGYCV-KTFTGHREWV-----RMVRPNQDGTLIASCSNDQTV 258
Query: 712 RVWDTTAGRCERILTGHTQSVTCLRWGGDG--------------------------LLYS 813
RVW C+ L H V C+ W + L S
Sbjct: 259 RVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSEEENPRTKKSGKPGPFLLS 318
Query: 814 ASQDRTIKVWRAHDGVLCRTL 876
S+D+TIK+W G+ TL
Sbjct: 319 GSRDKTIKMWDVSTGMCLMTL 339
Score = 91.7 bits (226), Expect = 8e-19
Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 1/165 (0%)
Frame = +1
Query: 352 SLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDG 531
+L GH V V F P + S S D T++ WD T T +GH V IS+ G
Sbjct: 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 162
Query: 532 KKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSV 711
K LAS + I LWD G + R + GH +++++ P ++ S+S+D ++
Sbjct: 163 KLLASCSADMTIKLWD-FQGFECIRTMHGHDHNVSSVA-----IMPNGDHIVSASRDKTI 216
Query: 712 RVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVW 843
++W+ G C + TGH + V +R DG L+ S S D+T++VW
Sbjct: 217 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
Score = 89.7 bits (221), Expect = 3e-18
Identities = 56/189 (29%), Positives = 88/189 (46%), Gaps = 22/189 (11%)
Frame = +1
Query: 343 CTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWS 522
C ++ GH V SVA P G ++ S S D T++ W++ T T GHR WV + +
Sbjct: 184 CIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN 243
Query: 523 PDGKKLASGCKNGQ-ILLWDPSTGKQVGRALAGHSKWITALSWEPLHA------------ 663
DG +AS C N Q + +W +T K+ L H + +SW P +
Sbjct: 244 QDGTLIAS-CSNDQTVRVWVVAT-KECKAELREHEHVVECISWAPESSYSSISEATGSEE 301
Query: 664 -NPECR-------YVASSSKDGSVRVWDTTAGRCERILTGHTQSVT-CLRWGGDGLLYSA 816
NP + ++ S S+D ++++WD + G C L GH V L G + S
Sbjct: 302 ENPRTKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSC 361
Query: 817 SQDRTIKVW 843
+ D+T++VW
Sbjct: 362 ADDKTLRVW 370
Score = 80.9 bits (198), Expect = 1e-15
Identities = 57/193 (29%), Positives = 86/193 (44%), Gaps = 26/193 (13%)
Frame = +1
Query: 343 CTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWS 522
C + GH E V V + G +AS S D TVR W ++T+ + H H V ISW+
Sbjct: 226 CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWA 285
Query: 523 PD-------------------------GKKLASGCKNGQILLWDPSTGKQVGRALAGHSK 627
P+ G L SG ++ I +WD STG + L GH
Sbjct: 286 PESSYSSISEATGSEEENPRTKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL-MTLVGHDN 344
Query: 628 WITALSWEPLHANPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQSVTCLRWGGDG-L 804
W+ + + H+ +++ S + D ++RVWD RC + L H VT L +
Sbjct: 345 WVRGVLF---HSGG--KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY 399
Query: 805 LYSASQDRTIKVW 843
+ + S D+T+KVW
Sbjct: 400 VVTGSVDQTVKVW 412
Score = 62.4 bits (150), Expect = 5e-10
Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 2/135 (1%)
Frame = +1
Query: 475 FTCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEP 654
+ GHR V + + P + S ++ I +WD TG R L GH+ + +S++
Sbjct: 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG-DFERTLKGHTDSVQDISFD- 159
Query: 655 LHANPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQSVT--CLRWGGDGLLYSASQDR 828
H+ + +AS S D ++++WD C R + GH +V+ + GD ++ SAS+D+
Sbjct: 160 -HSG---KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIV-SASRDK 214
Query: 829 TIKVWRAHDGVLCRT 873
TIK+W G +T
Sbjct: 215 TIKMWEVQTGYCVKT 229
Score = 61.6 bits (148), Expect = 9e-10
Identities = 43/159 (27%), Positives = 78/159 (49%), Gaps = 1/159 (0%)
Frame = +1
Query: 250 KTLESQAVETEKVLDII-YQPQAVFKVRAVTRCTSSLEGHSEAVISVAFSPTGKYLASGS 426
K +++ E E V++ I + P++ + +++ T S E + S G +L SGS
Sbjct: 266 KECKAELREHEHVVECISWAPESSYS--SISEATGSEEENPRTKKS---GKPGPFLLSGS 320
Query: 427 GDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGKQVGR 606
D T++ WD+ST T GH +WV + + GK + S + + +WD K+ +
Sbjct: 321 RDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD-YKNKRCMK 379
Query: 607 ALAGHSKWITALSWEPLHANPECRYVASSSKDGSVRVWD 723
L H ++T+L + + YV + S D +V+VW+
Sbjct: 380 TLNAHEHFVTSLDF-----HKTAPYVVTGSVDQTVKVWE 413
>ref|XP_536036.2| PREDICTED: similar to WD-repeat protein 12 (YTM1 homolog) isoform 1
[Canis familiaris].
Length = 343
Score = 94.0 bits (232), Expect = 2e-19
Identities = 59/168 (35%), Positives = 87/168 (51%), Gaps = 3/168 (1%)
Frame = +1
Query: 352 SLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDG 531
+L GH EA+ SV +S + + S S D T+R WD+ + + T G++ + IS+SP
Sbjct: 172 TLSGHKEAISSVLWSDAEE-ICSASWDHTIRVWDVESGSLKSTLTGNKVFNC-ISYSPLC 229
Query: 532 KKLASGCKNGQILLWDPST--GKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDG 705
K+LASG + I LWDP T G V +L H+ W+T+L W P H + + S S D
Sbjct: 230 KRLASGSTDRHIRLWDPRTKDGSLVSLSLTSHTGWVTSLKWSPTHE----QQLISGSLDN 285
Query: 706 SVRVWDTTAGRCERI-LTGHTQSVTCLRWGGDGLLYSASQDRTIKVWR 846
V++WDT + + L H V + W GLL S D + +R
Sbjct: 286 IVKLWDTRSCKAPLYDLAAHEDKVLSVDWTDTGLLLSGGADNKLYSYR 333
>ref|XP_859289.1| PREDICTED: similar to WD-repeat protein 12 (YTM1 homolog) isoform 3
[Canis familiaris].
Length = 212
Score = 94.0 bits (232), Expect = 2e-19
Identities = 59/168 (35%), Positives = 87/168 (51%), Gaps = 3/168 (1%)
Frame = +1
Query: 352 SLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDG 531
+L GH EA+ SV +S + + S S D T+R WD+ + + T G++ + IS+SP
Sbjct: 41 TLSGHKEAISSVLWSDAEE-ICSASWDHTIRVWDVESGSLKSTLTGNKVFNC-ISYSPLC 98
Query: 532 KKLASGCKNGQILLWDPST--GKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDG 705
K+LASG + I LWDP T G V +L H+ W+T+L W P H + + S S D
Sbjct: 99 KRLASGSTDRHIRLWDPRTKDGSLVSLSLTSHTGWVTSLKWSPTHE----QQLISGSLDN 154
Query: 706 SVRVWDTTAGRCERI-LTGHTQSVTCLRWGGDGLLYSASQDRTIKVWR 846
V++WDT + + L H V + W GLL S D + +R
Sbjct: 155 IVKLWDTRSCKAPLYDLAAHEDKVLSVDWTDTGLLLSGGADNKLYSYR 202
>ref|XP_532646.2| PREDICTED: similar to WD repeat domain 51B [Canis familiaris].
Length = 833
Score = 93.2 bits (230), Expect = 3e-19
Identities = 53/163 (32%), Positives = 89/163 (54%), Gaps = 1/163 (0%)
Frame = +1
Query: 358 EGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGKK 537
+GH A+ SV FSP+GK LA+ S DT + W+ + F GH+ V S+ +SP G
Sbjct: 370 KGHKAAITSVDFSPSGKQLATASWDTFLMLWNCKPQARAFRYVGHKDVVTSVQFSPLGNL 429
Query: 538 LASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSVRV 717
LAS ++ + LW P + H+ + ++ + + + +++A++S+D S++V
Sbjct: 430 LASASRDRTVRLWIPDK-RGKSSEFKAHTAPVRSVDF-----SADGQFLATASEDKSIKV 483
Query: 718 WDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVW 843
W+ R L HT V C ++ DG L+ S S+D+TIK+W
Sbjct: 484 WNMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIW 526
Score = 81.3 bits (199), Expect = 1e-15
Identities = 50/178 (28%), Positives = 90/178 (50%), Gaps = 1/178 (0%)
Frame = +1
Query: 346 TSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSP 525
+S + H+ V SV FS G++LA+ S D +++ W++ + ++ H HWV +SP
Sbjct: 450 SSEFKAHTAPVRSVDFSADGQFLATASEDKSIKVWNMYRQRFLYSLYRHTHWVRCAKFSP 509
Query: 526 DGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDG 705
DG+ + S ++ I +WD +T KQ + + + + P N C +AS+ D
Sbjct: 510 DGRLIVSCSEDKTIKIWD-TTNKQCVNNFSDSVGFANFVDFNP---NGTC--IASAGSDH 563
Query: 706 SVRVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVWRAHDGVLCRTL 876
+V++WD + + H+ V C+ + G + +AS D T+K+ +G L TL
Sbjct: 564 TVKIWDIRVNKLLQHYQVHSGGVNCVSFHPSGNYIITASSDGTLKILDLLEGRLIYTL 621
Score = 53.9 bits (128), Expect = 2e-07
Identities = 28/81 (34%), Positives = 44/81 (54%)
Frame = +1
Query: 334 VTRCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSI 513
V + + HS V V+F P+G Y+ + S D T++ DL +T QGH V ++
Sbjct: 572 VNKLLQHYQVHSGGVNCVSFHPSGNYIITASSDGTLKILDLLEGRLIYTLQGHTGPVFTV 631
Query: 514 SWSPDGKKLASGCKNGQILLW 576
S+S G+ +SG + Q+LLW
Sbjct: 632 SFSKGGELFSSGGADTQVLLW 652
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,281,791
Number of extensions: 1240990
Number of successful extensions: 8295
Number of sequences better than 1.0e-05: 212
Number of HSP's gapped: 6854
Number of HSP's successfully gapped: 501
Length of query: 292
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 190
Effective length of database: 15,474,232
Effective search space: 2940104080
Effective search space used: 2940104080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014089
(876 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003358201.1| PREDICTED: notchless protein homolog 1 [Sus ... 563 e-161
Alignment gi|XP_003353752.1| PREDICTED: WD repeat-containing protein 5 [S... 112 3e-25
Alignment gi|XP_003358840.1| PREDICTED: WD repeat-containing protein 5B-l... 104 6e-23
Alignment gi|XP_003353713.1| PREDICTED: WD repeat-containing protein 38-l... 103 2e-22
Alignment gi|XP_001927805.1| PREDICTED: WD repeat-containing protein 38-l... 103 2e-22
Alignment gi|NP_999415.1| platelet-activating factor acetylhydrolase IB s... 98 7e-21
Alignment gi|XP_003359661.1| PREDICTED: ribosome biogenesis protein WDR12... 92 4e-19
Alignment gi|XP_003362067.1| PREDICTED: f-box/WD repeat-containing protei... 92 5e-19
Alignment gi|XP_003362066.1| PREDICTED: f-box/WD repeat-containing protei... 92 5e-19
Alignment gi|XP_003362065.1| PREDICTED: f-box/WD repeat-containing protei... 92 5e-19
>ref|XP_003358201.1| PREDICTED: notchless protein homolog 1 [Sus scrofa].
Length = 485
Score = 563 bits (1452), Expect = e-161
Identities = 271/273 (99%), Positives = 273/273 (100%)
Frame = +1
Query: 58 PRDVQRLLVQFQDEGGQLLGSPFDVPVDITPDKLQLVCNALLAQEDPLPLAFYVHDAEIV 237
PRDVQRLLVQFQDEGGQLLGSPFDVPVDITPDKLQLVCNALLAQEDPLPLAFYVHDAEI+
Sbjct: 11 PRDVQRLLVQFQDEGGQLLGSPFDVPVDITPDKLQLVCNALLAQEDPLPLAFYVHDAEII 70
Query: 238 SSLGKTLESQAVETEKVLDIIYQPQAVFKVRAVTRCTSSLEGHSEAVISVAFSPTGKYLA 417
SSLGKTLESQAVETEKVLDIIYQPQAVF+VRAVTRCTSSLEGHSEAVISVAFSPTGKYLA
Sbjct: 71 SSLGKTLESQAVETEKVLDIIYQPQAVFRVRAVTRCTSSLEGHSEAVISVAFSPTGKYLA 130
Query: 418 SGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGKQ 597
SGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGKQ
Sbjct: 131 SGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGKQ 190
Query: 598 VGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQSVT 777
VGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQSVT
Sbjct: 191 VGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQSVT 250
Query: 778 CLRWGGDGLLYSASQDRTIKVWRAHDGVLCRTL 876
CLRWGGDGLLYSASQDRTIKVWRAHDGVLCRTL
Sbjct: 251 CLRWGGDGLLYSASQDRTIKVWRAHDGVLCRTL 283
Score = 78.6 bits (192), Expect = 4e-15
Identities = 57/211 (27%), Positives = 87/211 (41%), Gaps = 43/211 (20%)
Frame = +1
Query: 340 RCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISW 519
RC L GH+++V + + G L S S D T++ W T QGH HWV +++
Sbjct: 237 RCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMAL 295
Query: 520 SPDG------------------------------------------KKLASGCKNGQILL 573
S D ++L SG + + L
Sbjct: 296 STDYALRTGAFEPAEASVNAQDLRGSLQELKERALSRYNLVRGRGLERLVSGSDDFTLFL 355
Query: 574 WDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSVRVWDTTAGRCERIL 753
W P+ K+ + GH I + + +P+ R +AS+S D S+++WD G+ L
Sbjct: 356 WSPAEDKKPLARMTGHQALINQVLF-----SPDSRIIASASFDKSIKLWDGRTGKYLASL 410
Query: 754 TGHTQSVTCLRWGGDG-LLYSASQDRTIKVW 843
GH +V + W D LL S S D T+KVW
Sbjct: 411 RGHVAAVYQIAWSADSRLLVSGSSDSTLKVW 441
Score = 77.4 bits (189), Expect = 1e-14
Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 2/147 (1%)
Frame = +1
Query: 412 LASGSGDTTVRFWDLSTET-PHFTCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPST 588
L SGS D T+ W + + P GH+ + + +SPD + +AS + I LWD T
Sbjct: 344 LVSGSDDFTLFLWSPAEDKKPLARMTGHQALINQVLFSPDSRIIASASFDKSIKLWDGRT 403
Query: 589 GKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQ 768
GK + +L GH + ++W + + R + S S D +++VWD A + L GH
Sbjct: 404 GKYLA-SLRGHVAAVYQIAW-----SADSRLLVSGSSDSTLKVWDVKAQKLAADLPGHAD 457
Query: 769 SVTCLRWGGDG-LLYSASQDRTIKVWR 846
V + W DG + S +D+ +++WR
Sbjct: 458 EVYAVDWSPDGQRVASGGKDKCLRIWR 484
Score = 72.0 bits (175), Expect = 4e-13
Identities = 39/122 (31%), Positives = 62/122 (50%)
Frame = +1
Query: 355 LEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGK 534
+ GH + V FSP + +AS S D +++ WD T + +GH V I+WS D +
Sbjct: 368 MTGHQALINQVLFSPDSRIIASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWSADSR 427
Query: 535 KLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSVR 714
L SG + + +WD K + L GH+ + A+ W +P+ + VAS KD +R
Sbjct: 428 LLVSGSSDSTLKVWDVKAQK-LAADLPGHADEVYAVDW-----SPDGQRVASGGKDKCLR 481
Query: 715 VW 720
+W
Sbjct: 482 IW 483
Score = 65.5 bits (158), Expect = 4e-11
Identities = 29/76 (38%), Positives = 46/76 (60%)
Frame = +1
Query: 349 SSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPD 528
+SL GH AV +A+S + L SGS D+T++ WD+ + GH V ++ WSPD
Sbjct: 408 ASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQKLAADLPGHADEVYAVDWSPD 467
Query: 529 GKKLASGCKNGQILLW 576
G+++ASG K+ + +W
Sbjct: 468 GQRVASGGKDKCLRIW 483
>ref|XP_003353752.1| PREDICTED: WD repeat-containing protein 5 [Sus scrofa].
Length = 334
Score = 112 bits (280), Expect = 3e-25
Identities = 59/176 (33%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Frame = +1
Query: 352 SLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDG 531
+L GH++AV SV FSP G++LAS S D ++ W T GH+ + ++WS D
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 532 KKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSV 711
L S + + +WD S+GK + + L GHS ++ ++ NP+ + S S D SV
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCL-KTLKGHSNYVFCCNF-----NPQSNLIVSGSFDESV 153
Query: 712 RVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVWRAHDGVLCRTL 876
R+WD G+C + L H+ V+ + + DG L+ S+S D ++W G +TL
Sbjct: 154 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 209
Score = 83.2 bits (204), Expect = 2e-16
Identities = 43/172 (25%), Positives = 85/172 (49%), Gaps = 4/172 (2%)
Frame = +1
Query: 340 RCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISW 519
+C +L+GHS V F+P + SGS D +VR WD+ T T H V ++ +
Sbjct: 120 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 179
Query: 520 SPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSK 699
+ DG + S +G +WD ++G+ + + + ++ + + +P +Y+ +++
Sbjct: 180 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF-----SPNGKYILAATL 234
Query: 700 DGSVRVWDTTAGRCERILTGHTQSVTCL----RWGGDGLLYSASQDRTIKVW 843
D ++++WD + G+C + TGH C+ G + S S+D + +W
Sbjct: 235 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 286
Score = 75.5 bits (184), Expect = 4e-14
Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 1/135 (0%)
Frame = +1
Query: 475 FTCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEP 654
FT GH V S+ +SP+G+ LAS + I +W GK + ++GH I+ ++W
Sbjct: 39 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAW-- 95
Query: 655 LHANPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQSVTCLRWG-GDGLLYSASQDRT 831
+ + + S+S D ++++WD ++G+C + L GH+ V C + L+ S S D +
Sbjct: 96 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 152
Query: 832 IKVWRAHDGVLCRTL 876
+++W G +TL
Sbjct: 153 VRIWDVKTGKCLKTL 167
>ref|XP_003358840.1| PREDICTED: WD repeat-containing protein 5B-like [Sus scrofa].
Length = 330
Score = 104 bits (260), Expect = 6e-23
Identities = 64/211 (30%), Positives = 103/211 (48%), Gaps = 1/211 (0%)
Frame = +1
Query: 247 GKTLESQAVETEKVLDIIYQPQAVFKVRAVTRCTSSLEGHSEAVISVAFSPTGKYLASGS 426
G L S A ++++V + +P K +L GH+EAV SV FSP G++LAS S
Sbjct: 12 GSALSSSANQSKQVAE---KPNYTLKF--------TLVGHTEAVSSVKFSPNGEWLASSS 60
Query: 427 GDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGKQVGR 606
D + W +GH + ++WS D +L S + + +WD GK + +
Sbjct: 61 ADKVIIIWGAYDGKYEKALKGHSLEISDVAWSSDSGRLVSASDDKTLKIWDVRVGKCL-K 119
Query: 607 ALAGHSKWITALSWEPLHANPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQSVTCLR 786
L GHS ++ ++ NP + S S D SV++W+ GRC + L+ H+ V+ +
Sbjct: 120 TLKGHSNYVFCCNF-----NPPSNLIISGSFDESVKIWEVKTGRCLKTLSAHSDPVSAVH 174
Query: 787 WGGDG-LLYSASQDRTIKVWRAHDGVLCRTL 876
+ G L+ S S D ++W A G +TL
Sbjct: 175 FNCKGSLIVSGSYDGVCRIWDAASGQCLKTL 205
Score = 80.9 bits (198), Expect = 9e-16
Identities = 52/218 (23%), Positives = 100/218 (45%), Gaps = 9/218 (4%)
Frame = +1
Query: 217 VHDAEIVSSLGKTLESQAVETEKVLDIIYQPQAVFKVRAVTRCTSSLEGHSEAVISVAFS 396
+ D S G+ + + +T K+ D+ V +C +L+GHS V F+
Sbjct: 86 ISDVAWSSDSGRLVSASDDKTLKIWDV-----------RVGKCLKTLKGHSNYVFCCNFN 134
Query: 397 PTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGKKLASGCKNGQILLW 576
P + SGS D +V+ W++ T T H V ++ ++ G + SG +G +W
Sbjct: 135 PPSNLIISGSFDESVKIWEVKTGRCLKTLSAHSDPVSAVHFNCKGSLIVSGSYDGVCRIW 194
Query: 577 DPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSVRVWDTTAGRCERILT 756
D ++G+ + + + I+ + + +P +Y+ ++ D ++++WD + GRC + T
Sbjct: 195 DAASGQCLKTLVDDDNPPISFVKF-----SPNGKYILIATLDNTLKLWDYSRGRCLKTYT 249
Query: 757 GHTQ---------SVTCLRWGGDGLLYSASQDRTIKVW 843
GH SVT +W + S S+D + +W
Sbjct: 250 GHKNEKYCIFANFSVTSGKW-----IVSGSEDNLVYIW 282
Score = 60.8 bits (146), Expect = 9e-10
Identities = 46/177 (25%), Positives = 84/177 (47%), Gaps = 6/177 (3%)
Frame = +1
Query: 340 RCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLS-IS 516
RC +L HS+ V +V F+ G + SGS D R WD ++ T + +S +
Sbjct: 158 RCLKTLSAHSDPVSAVHFNCKGSLIVSGSYDGVCRIWDAASGQCLKTLVDDDNPPISFVK 217
Query: 517 WSPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHS--KWITALSWEPLHANPECRYVAS 690
+SP+GK + + + LWD S G+ + + GH K+ ++ +++ S
Sbjct: 218 FSPNGKYILIATLDNTLKLWDYSRGRCL-KTYTGHKNEKYCIFANFSVTSG----KWIVS 272
Query: 691 SSKDGSVRVWDTTAGRCERILTGHTQSV-TCLRWGGDGLLYSAS--QDRTIKVWRAH 852
S+D V +W+ + L GHT V + + ++ SA+ D+T+K+W ++
Sbjct: 273 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISAACHPTENIIASAALGNDKTVKLWMSN 329
>ref|XP_003353713.1| PREDICTED: WD repeat-containing protein 38-like [Sus scrofa].
Length = 312
Score = 103 bits (256), Expect = 2e-22
Identities = 61/167 (36%), Positives = 95/167 (56%), Gaps = 3/167 (1%)
Frame = +1
Query: 355 LEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGK 534
L GH+ V FSP G+ AS S D T+R WD++ +GH+ V ++S+SPD K
Sbjct: 59 LGGHTGPVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSK 118
Query: 535 KLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSVR 714
+LASG + +++LW+ +G QV R L GH I + + P + +C +A+ S D ++R
Sbjct: 119 QLASGGWDKRVMLWEVQSG-QVLRHLVGHRDSIQSSDFAP---SSDC--LATGSWDSTIR 172
Query: 715 VWDTTAGR---CERILTGHTQSVTCLRWGGDGLLYSASQDRTIKVWR 846
+WD G + L GH +++CL + GLL S S D+TI +W+
Sbjct: 173 MWDLRGGTGAIFHQELEGHRGNISCLCFSAFGLLASGSWDKTIHIWK 219
Score = 81.3 bits (199), Expect = 7e-16
Identities = 58/185 (31%), Positives = 83/185 (44%), Gaps = 3/185 (1%)
Frame = +1
Query: 331 AVTRCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLS 510
A C L+GH +V +V+FSP K LASG D V W++ + GHR + S
Sbjct: 93 AKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQS 152
Query: 511 ISWSPDGKKLASGCKNGQILLWD--PSTGKQVGRALAGHSKWITALSWEPLHANPECRYV 684
++P LA+G + I +WD TG + L GH I+ L + +
Sbjct: 153 SDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAF------GLL 206
Query: 685 ASSSKDGSVRVWDTTAGRCERILTGHTQSVTCLRWGGDGL-LYSASQDRTIKVWRAHDGV 861
AS S D ++ +W + L GH V + + DGL L SA T+KVW + G
Sbjct: 207 ASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGR 266
Query: 862 LCRTL 876
TL
Sbjct: 267 CTDTL 271
Score = 77.8 bits (190), Expect = 7e-15
Identities = 54/162 (33%), Positives = 84/162 (51%), Gaps = 4/162 (2%)
Frame = +1
Query: 355 LEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETP---HFTCQGHRHWVLSISWSP 525
L GH +++ S F+P+ LA+GS D+T+R WDL T H +GHR + + +S
Sbjct: 143 LVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSA 202
Query: 526 DGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDG 705
G LASG + I +W PST + + L GH W+ ++++ +P+ +AS+
Sbjct: 203 FGL-LASGSWDKTIHIWKPSTRSLLVQ-LKGHVTWVKSIAF-----SPDGLQLASAGYSH 255
Query: 706 SVRVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDR 828
+V+VWD GRC L G + DG LL S + D+
Sbjct: 256 TVKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKLLVSGTADQ 297
Score = 67.4 bits (163), Expect = 1e-11
Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 1/166 (0%)
Frame = +1
Query: 364 HSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGKKLA 543
H V S FSP G+ L + S D V W+ + + GH V +SPDG+ A
Sbjct: 20 HRGEVNSSTFSPDGQRLLTASEDGCVYGWETQSGRLLWKLGGHTGPVKFCRFSPDGRLFA 79
Query: 544 SGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSVRVWD 723
S + I LWD + + + + L GH + + +S+ +P+ + +AS D V +W+
Sbjct: 80 STSSDCTIRLWDVAKVECL-QVLKGHQRSVETVSF-----SPDSKQLASGGWDKRVMLWE 133
Query: 724 TTAGRCERILTGHTQSVTCLRWG-GDGLLYSASQDRTIKVWRAHDG 858
+G+ R L GH S+ + L + S D TI++W G
Sbjct: 134 VQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGG 179
>ref|XP_001927805.1| PREDICTED: WD repeat-containing protein 38-like [Sus scrofa].
Length = 312
Score = 103 bits (256), Expect = 2e-22
Identities = 61/167 (36%), Positives = 95/167 (56%), Gaps = 3/167 (1%)
Frame = +1
Query: 355 LEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGK 534
L GH+ V FSP G+ AS S D T+R WD++ +GH+ V ++S+SPD K
Sbjct: 59 LGGHTGPVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSK 118
Query: 535 KLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSVR 714
+LASG + +++LW+ +G QV R L GH I + + P + +C +A+ S D ++R
Sbjct: 119 QLASGGWDKRVMLWEVQSG-QVLRHLVGHRDSIQSSDFAP---SSDC--LATGSWDSTIR 172
Query: 715 VWDTTAGR---CERILTGHTQSVTCLRWGGDGLLYSASQDRTIKVWR 846
+WD G + L GH +++CL + GLL S S D+TI +W+
Sbjct: 173 MWDLRGGTGAIFHQELEGHRGNISCLCFSAFGLLASGSWDKTIHIWK 219
Score = 81.3 bits (199), Expect = 7e-16
Identities = 58/185 (31%), Positives = 83/185 (44%), Gaps = 3/185 (1%)
Frame = +1
Query: 331 AVTRCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLS 510
A C L+GH +V +V+FSP K LASG D V W++ + GHR + S
Sbjct: 93 AKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQS 152
Query: 511 ISWSPDGKKLASGCKNGQILLWD--PSTGKQVGRALAGHSKWITALSWEPLHANPECRYV 684
++P LA+G + I +WD TG + L GH I+ L + +
Sbjct: 153 SDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAF------GLL 206
Query: 685 ASSSKDGSVRVWDTTAGRCERILTGHTQSVTCLRWGGDGL-LYSASQDRTIKVWRAHDGV 861
AS S D ++ +W + L GH V + + DGL L SA T+KVW + G
Sbjct: 207 ASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGR 266
Query: 862 LCRTL 876
TL
Sbjct: 267 CTDTL 271
Score = 77.8 bits (190), Expect = 7e-15
Identities = 54/162 (33%), Positives = 84/162 (51%), Gaps = 4/162 (2%)
Frame = +1
Query: 355 LEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETP---HFTCQGHRHWVLSISWSP 525
L GH +++ S F+P+ LA+GS D+T+R WDL T H +GHR + + +S
Sbjct: 143 LVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSA 202
Query: 526 DGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDG 705
G LASG + I +W PST + + L GH W+ ++++ +P+ +AS+
Sbjct: 203 FGL-LASGSWDKTIHIWKPSTRSLLVQ-LKGHVTWVKSIAF-----SPDGLQLASAGYSH 255
Query: 706 SVRVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDR 828
+V+VWD GRC L G + DG LL S + D+
Sbjct: 256 TVKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKLLVSGTADQ 297
Score = 67.4 bits (163), Expect = 1e-11
Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 1/166 (0%)
Frame = +1
Query: 364 HSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGKKLA 543
H V S FSP G+ L + S D V W+ + + GH V +SPDG+ A
Sbjct: 20 HRGEVNSSTFSPDGQRLLTASEDGCVYGWETQSGRLLWKLGGHTGPVKFCRFSPDGRLFA 79
Query: 544 SGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSVRVWD 723
S + I LWD + + + + L GH + + +S+ +P+ + +AS D V +W+
Sbjct: 80 STSSDCTIRLWDVAKVECL-QVLKGHQRSVETVSF-----SPDSKQLASGGWDKRVMLWE 133
Query: 724 TTAGRCERILTGHTQSVTCLRWG-GDGLLYSASQDRTIKVWRAHDG 858
+G+ R L GH S+ + L + S D TI++W G
Sbjct: 134 VQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGG 179
>ref|NP_999415.1| platelet-activating factor acetylhydrolase IB subunit alpha [Sus
scrofa].
Length = 410
Score = 97.8 bits (242), Expect = 7e-21
Identities = 58/196 (29%), Positives = 90/196 (45%), Gaps = 21/196 (10%)
Frame = +1
Query: 352 SLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDG 531
+L+GH+++V ++F +GK LAS S D T++ WD T GH H V S++ P+G
Sbjct: 145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNG 204
Query: 532 KKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSV 711
+ S ++ I +W+ TG V + GH +W+ + N + +AS S D +V
Sbjct: 205 DHIVSAARDKTIKMWEVQTGYCV-KTFTGHREWV-----RMVRPNQDGTLIASCSNDQTV 258
Query: 712 RVWDTTAGRCERILTGHTQSVTCLRWGGDG---------------------LLYSASQDR 828
RVW C+ L H V C+ W + L S S+D+
Sbjct: 259 RVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 318
Query: 829 TIKVWRAHDGVLCRTL 876
TIK+W G+ TL
Sbjct: 319 TIKMWDVSTGMCLMTL 334
Score = 90.5 bits (223), Expect = 1e-18
Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 1/165 (0%)
Frame = +1
Query: 352 SLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDG 531
+L GH V V F P + S S D T++ WD T T +GH V IS+ G
Sbjct: 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 162
Query: 532 KKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSV 711
K LAS + I LWD G + R + GH +++++ P ++ S+++D ++
Sbjct: 163 KLLASCSADMTIKLWD-FQGFECIRTMHGHDHNVSSVA-----IMPNGDHIVSAARDKTI 216
Query: 712 RVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVW 843
++W+ G C + TGH + V +R DG L+ S S D+T++VW
Sbjct: 217 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
Score = 87.4 bits (215), Expect = 9e-18
Identities = 53/184 (28%), Positives = 85/184 (46%), Gaps = 17/184 (9%)
Frame = +1
Query: 343 CTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWS 522
C ++ GH V SVA P G ++ S + D T++ W++ T T GHR WV + +
Sbjct: 184 CIRTMHGHDHNVSSVAIMPNGDHIVSAARDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN 243
Query: 523 PDGKKLASGCKNGQ-ILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECR------- 678
DG +AS C N Q + +W +T K+ L H + +SW P +
Sbjct: 244 QDGTLIAS-CSNDQTVRVWVVAT-KECKAELREHEHVVECISWAPESSYSSISEATGSET 301
Query: 679 --------YVASSSKDGSVRVWDTTAGRCERILTGHTQSVT-CLRWGGDGLLYSASQDRT 831
++ S S+D ++++WD + G C L GH V L G + S + D+T
Sbjct: 302 KKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT 361
Query: 832 IKVW 843
++VW
Sbjct: 362 LRVW 365
Score = 82.8 bits (203), Expect = 2e-16
Identities = 57/188 (30%), Positives = 86/188 (45%), Gaps = 21/188 (11%)
Frame = +1
Query: 343 CTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWS 522
C + GH E V V + G +AS S D TVR W ++T+ + H H V ISW+
Sbjct: 226 CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWA 285
Query: 523 PD--------------------GKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITAL 642
P+ G L SG ++ I +WD STG + L GH W+ +
Sbjct: 286 PESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL-MTLVGHDNWVRGV 344
Query: 643 SWEPLHANPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSAS 819
+ H+ +++ S + D ++RVWD RC + L H VT L + + + S
Sbjct: 345 LF---HSGG--KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGS 399
Query: 820 QDRTIKVW 843
D+T+KVW
Sbjct: 400 VDQTVKVW 407
Score = 61.6 bits (148), Expect = 5e-10
Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 20/153 (13%)
Frame = +1
Query: 325 VRAVTRCTSSLEGHSEAVISVAFSPT--------------------GKYLASGSGDTTVR 444
V A C + L H V ++++P G +L SGS D T++
Sbjct: 262 VVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 321
Query: 445 FWDLSTETPHFTCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHS 624
WD+ST T GH +WV + + GK + S + + +WD K+ + L H
Sbjct: 322 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD-YKNKRCMKTLNAHE 380
Query: 625 KWITALSWEPLHANPECRYVASSSKDGSVRVWD 723
++T+L + + YV + S D +V+VW+
Sbjct: 381 HFVTSLDF-----HKTAPYVVTGSVDQTVKVWE 408
Score = 61.2 bits (147), Expect = 7e-10
Identities = 39/135 (28%), Positives = 69/135 (51%), Gaps = 2/135 (1%)
Frame = +1
Query: 475 FTCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEP 654
+ GHR V + + P + S ++ I +WD TG R L GH+ + +S++
Sbjct: 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG-DFERTLKGHTDSVQDISFD- 159
Query: 655 LHANPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQSVT--CLRWGGDGLLYSASQDR 828
H+ + +AS S D ++++WD C R + GH +V+ + GD ++ SA++D+
Sbjct: 160 -HSG---KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIV-SAARDK 214
Query: 829 TIKVWRAHDGVLCRT 873
TIK+W G +T
Sbjct: 215 TIKMWEVQTGYCVKT 229
>ref|XP_003359661.1| PREDICTED: ribosome biogenesis protein WDR12-like [Sus scrofa].
Length = 220
Score = 92.0 bits (227), Expect = 4e-19
Identities = 67/209 (32%), Positives = 104/209 (49%), Gaps = 8/209 (3%)
Frame = +1
Query: 244 LGKTLESQAVETEKVLDIIYQPQAVF--KVRAVTRCTS---SLEGHSEAVISVAFSPTGK 408
LG L+S A + + +I VF K++ + R + +L GH EA+ SV +S +
Sbjct: 8 LGFKLKSAAYKQYDLGQVISLSFNVFMYKIKRIWRNVTPIVTLSGHKEAISSVLWSDAEE 67
Query: 409 YLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPST 588
+ S S D T+ WD+ + + T G++ + IS+SP K+LASG + I LWDP T
Sbjct: 68 -ICSASWDHTIGVWDVESGSLKSTLTGNKVFNC-ISYSPLCKRLASGSTDRHIRLWDPRT 125
Query: 589 --GKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSVRVWDTTAGRCERI-LTG 759
G V +L H+ W+T++ W P H + + S S D V++WDT + + L
Sbjct: 126 KDGSLVSLSLTSHTGWVTSVKWSPTHE----QQLISGSLDNIVKLWDTRSCKAPLYDLAA 181
Query: 760 HTQSVTCLRWGGDGLLYSASQDRTIKVWR 846
H V + W GLL S D + +R
Sbjct: 182 HEDKVLSVDWTNTGLLLSGGADNKLYSYR 210
>ref|XP_003362067.1| PREDICTED: f-box/WD repeat-containing protein 7 isoform 3 [Sus
scrofa].
Length = 589
Score = 91.7 bits (226), Expect = 5e-19
Identities = 59/178 (33%), Positives = 87/178 (48%)
Frame = +1
Query: 343 CTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWS 522
C +L GH+ V + K + SGS D T+R WD+ T GH V + +
Sbjct: 335 CIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY- 391
Query: 523 PDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKD 702
DG+++ SG + + +WDP T + L GH+ + +L ++ +H V S S D
Sbjct: 392 -DGRRVVSGAYDFMVKVWDPETETCL-HTLQGHTNRVYSLQFDGIH-------VVSGSLD 442
Query: 703 GSVRVWDTTAGRCERILTGHTQSVTCLRWGGDGLLYSASQDRTIKVWRAHDGVLCRTL 876
S+RVWD G C LTGH QS+T D +L S + D T+K+W G +TL
Sbjct: 443 TSIRVWDVETGNCIHTLTGH-QSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTL 499
Score = 86.3 bits (212), Expect = 2e-17
Identities = 57/182 (31%), Positives = 88/182 (48%), Gaps = 3/182 (1%)
Frame = +1
Query: 340 RCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISW 519
+C L GH AV V + G+ + SG+ D V+ WD TET T QGH + V S+ +
Sbjct: 374 QCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF 431
Query: 520 SPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSK 699
DG + SG + I +WD TG + L GH + + + + S +
Sbjct: 432 --DGIHVVSGSLDTSIRVWDVETGNCI-HTLTGHQSLTSGMELKD-------NILVSGNA 481
Query: 700 DGSVRVWDTTAGRCERILTG---HTQSVTCLRWGGDGLLYSASQDRTIKVWRAHDGVLCR 870
D +V++WD G+C + L G H +VTCL++ + ++S D T+K+W G R
Sbjct: 482 DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF-NKNFVITSSDDGTVKLWDLKTGEFIR 540
Query: 871 TL 876
L
Sbjct: 541 NL 542
Score = 69.3 bits (168), Expect = 3e-12
Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 2/176 (1%)
Frame = +1
Query: 355 LEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGK 534
L+GH + VI+ SGS D T++ W T T GH V WS +
Sbjct: 258 LKGHDDHVIT-CXXXXXXXXXSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQMR 312
Query: 535 K--LASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGS 708
+ SG + + +W+ TG+ + L GH+ + + LH + V S S+D +
Sbjct: 313 DNIIISGSTDRTLKVWNAETGECI-HTLYGHTSTVRCMH---LHE----KRVVSGSRDAT 364
Query: 709 VRVWDTTAGRCERILTGHTQSVTCLRWGGDGLLYSASQDRTIKVWRAHDGVLCRTL 876
+RVWD G+C +L GH +V C+++ G ++ S + D +KVW TL
Sbjct: 365 LRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVV-SGAYDFMVKVWDPETETCLHTL 419
>ref|XP_003362066.1| PREDICTED: f-box/WD repeat-containing protein 7 isoform 2 [Sus
scrofa].
Length = 705
Score = 91.7 bits (226), Expect = 5e-19
Identities = 59/178 (33%), Positives = 87/178 (48%)
Frame = +1
Query: 343 CTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWS 522
C +L GH+ V + K + SGS D T+R WD+ T GH V + +
Sbjct: 451 CIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY- 507
Query: 523 PDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKD 702
DG+++ SG + + +WDP T + L GH+ + +L ++ +H V S S D
Sbjct: 508 -DGRRVVSGAYDFMVKVWDPETETCL-HTLQGHTNRVYSLQFDGIH-------VVSGSLD 558
Query: 703 GSVRVWDTTAGRCERILTGHTQSVTCLRWGGDGLLYSASQDRTIKVWRAHDGVLCRTL 876
S+RVWD G C LTGH QS+T D +L S + D T+K+W G +TL
Sbjct: 559 TSIRVWDVETGNCIHTLTGH-QSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTL 615
Score = 86.3 bits (212), Expect = 2e-17
Identities = 57/182 (31%), Positives = 88/182 (48%), Gaps = 3/182 (1%)
Frame = +1
Query: 340 RCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISW 519
+C L GH AV V + G+ + SG+ D V+ WD TET T QGH + V S+ +
Sbjct: 490 QCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF 547
Query: 520 SPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSK 699
DG + SG + I +WD TG + L GH + + + + S +
Sbjct: 548 --DGIHVVSGSLDTSIRVWDVETGNCI-HTLTGHQSLTSGMELKD-------NILVSGNA 597
Query: 700 DGSVRVWDTTAGRCERILTG---HTQSVTCLRWGGDGLLYSASQDRTIKVWRAHDGVLCR 870
D +V++WD G+C + L G H +VTCL++ + ++S D T+K+W G R
Sbjct: 598 DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF-NKNFVITSSDDGTVKLWDLKTGEFIR 656
Query: 871 TL 876
L
Sbjct: 657 NL 658
Score = 69.3 bits (168), Expect = 3e-12
Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 2/176 (1%)
Frame = +1
Query: 355 LEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGK 534
L+GH + VI+ SGS D T++ W T T GH V WS +
Sbjct: 374 LKGHDDHVIT-CXXXXXXXXXSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQMR 428
Query: 535 K--LASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGS 708
+ SG + + +W+ TG+ + L GH+ + + LH + V S S+D +
Sbjct: 429 DNIIISGSTDRTLKVWNAETGECI-HTLYGHTSTVRCMH---LHE----KRVVSGSRDAT 480
Query: 709 VRVWDTTAGRCERILTGHTQSVTCLRWGGDGLLYSASQDRTIKVWRAHDGVLCRTL 876
+RVWD G+C +L GH +V C+++ G ++ S + D +KVW TL
Sbjct: 481 LRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVV-SGAYDFMVKVWDPETETCLHTL 535
>ref|XP_003362065.1| PREDICTED: f-box/WD repeat-containing protein 7 isoform 1 [Sus
scrofa].
Length = 627
Score = 91.7 bits (226), Expect = 5e-19
Identities = 59/178 (33%), Positives = 87/178 (48%)
Frame = +1
Query: 343 CTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWS 522
C +L GH+ V + K + SGS D T+R WD+ T GH V + +
Sbjct: 373 CIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY- 429
Query: 523 PDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKD 702
DG+++ SG + + +WDP T + L GH+ + +L ++ +H V S S D
Sbjct: 430 -DGRRVVSGAYDFMVKVWDPETETCL-HTLQGHTNRVYSLQFDGIH-------VVSGSLD 480
Query: 703 GSVRVWDTTAGRCERILTGHTQSVTCLRWGGDGLLYSASQDRTIKVWRAHDGVLCRTL 876
S+RVWD G C LTGH QS+T D +L S + D T+K+W G +TL
Sbjct: 481 TSIRVWDVETGNCIHTLTGH-QSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTL 537
Score = 86.3 bits (212), Expect = 2e-17
Identities = 57/182 (31%), Positives = 88/182 (48%), Gaps = 3/182 (1%)
Frame = +1
Query: 340 RCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISW 519
+C L GH AV V + G+ + SG+ D V+ WD TET T QGH + V S+ +
Sbjct: 412 QCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF 469
Query: 520 SPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSK 699
DG + SG + I +WD TG + L GH + + + + S +
Sbjct: 470 --DGIHVVSGSLDTSIRVWDVETGNCI-HTLTGHQSLTSGMELKD-------NILVSGNA 519
Query: 700 DGSVRVWDTTAGRCERILTG---HTQSVTCLRWGGDGLLYSASQDRTIKVWRAHDGVLCR 870
D +V++WD G+C + L G H +VTCL++ + ++S D T+K+W G R
Sbjct: 520 DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF-NKNFVITSSDDGTVKLWDLKTGEFIR 578
Query: 871 TL 876
L
Sbjct: 579 NL 580
Score = 69.3 bits (168), Expect = 3e-12
Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 2/176 (1%)
Frame = +1
Query: 355 LEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGK 534
L+GH + VI+ SGS D T++ W T T GH V WS +
Sbjct: 296 LKGHDDHVIT-CXXXXXXXXXSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQMR 350
Query: 535 K--LASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGS 708
+ SG + + +W+ TG+ + L GH+ + + LH + V S S+D +
Sbjct: 351 DNIIISGSTDRTLKVWNAETGECI-HTLYGHTSTVRCMH---LHE----KRVVSGSRDAT 402
Query: 709 VRVWDTTAGRCERILTGHTQSVTCLRWGGDGLLYSASQDRTIKVWRAHDGVLCRTL 876
+RVWD G+C +L GH +V C+++ G ++ S + D +KVW TL
Sbjct: 403 LRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVV-SGAYDFMVKVWDPETETCLHTL 457
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,452,027
Number of extensions: 783235
Number of successful extensions: 5024
Number of sequences better than 1.0e-05: 122
Number of HSP's gapped: 4203
Number of HSP's successfully gapped: 286
Length of query: 292
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 194
Effective length of database: 8,904,026
Effective search space: 1727381044
Effective search space used: 1727381044
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014089
(876 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_663406.2| notchless protein homolog 1 [Mus musculus]. 544 e-155
Alignment gi|NP_543124.1| WD repeat-containing protein 5 [Mus musculus]. 112 4e-25
Alignment gi|NP_083963.1| WD repeat-containing protein 38 [Mus musculus]. 103 2e-22
Alignment gi|NP_081389.1| WD repeat-containing protein 5B [Mus musculus]. 102 3e-22
Alignment gi|NP_038653.1| platelet-activating factor acetylhydrolase IB s... 97 1e-20
Alignment gi|NP_598727.1| TAF5-like RNA polymerase II p300/CBP-associated... 96 4e-20
Alignment gi|NP_081630.2| POC1 centriolar protein homolog A [Mus musculus]. 92 7e-19
Alignment gi|NP_536353.2| F-box/WD repeat-containing protein 7 isoform 2 ... 92 7e-19
Alignment gi|NP_001171245.1| F-box/WD repeat-containing protein 7 isoform... 92 7e-19
Alignment gi|NP_001171244.1| F-box/WD repeat-containing protein 7 isoform... 92 7e-19
>ref|NP_663406.2| notchless protein homolog 1 [Mus musculus].
Length = 485
Score = 544 bits (1401), Expect = e-155
Identities = 259/271 (95%), Positives = 266/271 (98%)
Frame = +1
Query: 64 DVQRLLVQFQDEGGQLLGSPFDVPVDITPDKLQLVCNALLAQEDPLPLAFYVHDAEIVSS 243
DVQRLLVQFQDEGGQLLGSPFDVPVDITPDKLQLVCNALLAQE+PLPLAFYVHDAEIVSS
Sbjct: 13 DVQRLLVQFQDEGGQLLGSPFDVPVDITPDKLQLVCNALLAQEEPLPLAFYVHDAEIVSS 72
Query: 244 LGKTLESQAVETEKVLDIIYQPQAVFKVRAVTRCTSSLEGHSEAVISVAFSPTGKYLASG 423
LGKTLESQ+VETEK++DIIYQPQAVF+VRAVTRCTSSLEGHSEAVISVAFSPTGKYLASG
Sbjct: 73 LGKTLESQSVETEKIVDIIYQPQAVFRVRAVTRCTSSLEGHSEAVISVAFSPTGKYLASG 132
Query: 424 SGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGKQVG 603
SGDTTVRFWDLSTETPHFTC+GHRHWVLSISWSPDGKKLASGCKNGQ+LLWDPSTG QVG
Sbjct: 133 SGDTTVRFWDLSTETPHFTCKGHRHWVLSISWSPDGKKLASGCKNGQVLLWDPSTGLQVG 192
Query: 604 RALAGHSKWITALSWEPLHANPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQSVTCL 783
R L GHSKWIT LSWEPLH NPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQSVTCL
Sbjct: 193 RTLTGHSKWITGLSWEPLHMNPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQSVTCL 252
Query: 784 RWGGDGLLYSASQDRTIKVWRAHDGVLCRTL 876
RWGGDGLLYSASQDRTIKVWRAHDGVLCRTL
Sbjct: 253 RWGGDGLLYSASQDRTIKVWRAHDGVLCRTL 283
Score = 78.2 bits (191), Expect = 8e-15
Identities = 57/228 (25%), Positives = 105/228 (46%), Gaps = 7/228 (3%)
Frame = +1
Query: 184 AQEDPLPLAFYVHDAEIVSSL---GKTLESQAVETEKVLDI-IYQP-QAVFKVRAVTRCT 348
A +D + HD + +L G + + A+ T+ L ++P +A + +
Sbjct: 263 ASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDYALRTGAFEPAEATVNAQDLQGSL 322
Query: 349 SSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTET-PHFTCQGHRHWVLSISWSP 525
L+ + + ++ + L SGS D T+ W + + P GH+ + + +SP
Sbjct: 323 KELKERASSRYNLVRGQGPERLVSGSDDFTLFLWSPAEDKKPLARMTGHQALINQVLFSP 382
Query: 526 DGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDG 705
D + +AS + I LWD TGK + +L GH + ++W + + R + S S D
Sbjct: 383 DSRIVASASFDKSIKLWDGRTGKYLA-SLRGHVAAVYQIAW-----SADSRLLVSGSSDS 436
Query: 706 SVRVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVWR 846
+++VWD A + L GH V + W DG + S +D+ +++WR
Sbjct: 437 TLKVWDVKAQKLATDLPGHADEVYAVDWSPDGQRVASGGKDKCLRIWR 484
>ref|NP_543124.1| WD repeat-containing protein 5 [Mus musculus].
Length = 334
Score = 112 bits (280), Expect = 4e-25
Identities = 59/176 (33%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Frame = +1
Query: 352 SLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDG 531
+L GH++AV SV FSP G++LAS S D ++ W T GH+ + ++WS D
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 532 KKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSV 711
L S + + +WD S+GK + + L GHS ++ ++ NP+ + S S D SV
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCL-KTLKGHSNYVFCCNF-----NPQSNLIVSGSFDESV 153
Query: 712 RVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVWRAHDGVLCRTL 876
R+WD G+C + L H+ V+ + + DG L+ S+S D ++W G +TL
Sbjct: 154 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 209
Score = 83.2 bits (204), Expect = 2e-16
Identities = 43/172 (25%), Positives = 85/172 (49%), Gaps = 4/172 (2%)
Frame = +1
Query: 340 RCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISW 519
+C +L+GHS V F+P + SGS D +VR WD+ T T H V ++ +
Sbjct: 120 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 179
Query: 520 SPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSK 699
+ DG + S +G +WD ++G+ + + + ++ + + +P +Y+ +++
Sbjct: 180 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF-----SPNGKYILAATL 234
Query: 700 DGSVRVWDTTAGRCERILTGHTQSVTCL----RWGGDGLLYSASQDRTIKVW 843
D ++++WD + G+C + TGH C+ G + S S+D + +W
Sbjct: 235 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 286
Score = 75.5 bits (184), Expect = 5e-14
Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 1/135 (0%)
Frame = +1
Query: 475 FTCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEP 654
FT GH V S+ +SP+G+ LAS + I +W GK + ++GH I+ ++W
Sbjct: 39 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAW-- 95
Query: 655 LHANPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQSVTCLRWG-GDGLLYSASQDRT 831
+ + + S+S D ++++WD ++G+C + L GH+ V C + L+ S S D +
Sbjct: 96 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 152
Query: 832 IKVWRAHDGVLCRTL 876
+++W G +TL
Sbjct: 153 VRIWDVKTGKCLKTL 167
>ref|NP_083963.1| WD repeat-containing protein 38 [Mus musculus].
Length = 303
Score = 103 bits (257), Expect = 2e-22
Identities = 59/167 (35%), Positives = 92/167 (55%), Gaps = 3/167 (1%)
Frame = +1
Query: 355 LEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGK 534
L GH V S FSP G+ +AS S D ++R WD++ +GH+ V ++S+SPD K
Sbjct: 64 LAGHRGPVKSCCFSPDGRLIASSSSDHSIRLWDVARSKCLHVLKGHQRSVETVSFSPDSK 123
Query: 535 KLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSVR 714
+LASG + + ++W+ +G++V L GH I + + P + +A+ S D +V
Sbjct: 124 QLASGGWDKRAIVWEVQSGRRV-HLLVGHCDSIQSSDFSPTSDS-----LATGSWDSTVH 177
Query: 715 VWDTTAGR---CERILTGHTQSVTCLRWGGDGLLYSASQDRTIKVWR 846
+WD A L GHT +++CL + GLL S S D+TI VW+
Sbjct: 178 IWDLRASTPVVSYHNLEGHTGNISCLCYSASGLLASGSWDKTICVWK 224
Score = 80.1 bits (196), Expect = 2e-15
Identities = 60/185 (32%), Positives = 83/185 (44%), Gaps = 3/185 (1%)
Frame = +1
Query: 331 AVTRCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLS 510
A ++C L+GH +V +V+FSP K LASG D W++ + GH + S
Sbjct: 98 ARSKCLHVLKGHQRSVETVSFSPDSKQLASGGWDKRAIVWEVQSGRRVHLLVGHCDSIQS 157
Query: 511 ISWSPDGKKLASGCKNGQILLWD--PSTGKQVGRALAGHSKWITALSWEPLHANPECRYV 684
+SP LA+G + + +WD ST L GH+ I+ L + +
Sbjct: 158 SDFSPTSDSLATGSWDSTVHIWDLRASTPVVSYHNLEGHTGNISCLCYS------ASGLL 211
Query: 685 ASSSKDGSVRVWDTTAGRCERILTGHTQSVTCLRWGGDGL-LYSASQDRTIKVWRAHDGV 861
AS S D ++ VW T L GHT V L + D L L SA RT+KVW G
Sbjct: 212 ASGSWDKTICVWKPTTNNLPLQLKGHTIWVNSLAFSPDELKLASAGYSRTVKVWDCLTGK 271
Query: 862 LCRTL 876
TL
Sbjct: 272 CLETL 276
Score = 79.3 bits (194), Expect = 4e-15
Identities = 48/138 (34%), Positives = 72/138 (52%), Gaps = 3/138 (2%)
Frame = +1
Query: 355 LEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETP---HFTCQGHRHWVLSISWSP 525
L GH +++ S FSPT LA+GS D+TV WDL TP + +GH + + +S
Sbjct: 148 LVGHCDSIQSSDFSPTSDSLATGSWDSTVHIWDLRASTPVVSYHNLEGHTGNISCLCYSA 207
Query: 526 DGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDG 705
G LASG + I +W P+T + L GH+ W+ +L++ P +AS+
Sbjct: 208 SGL-LASGSWDKTICVWKPTTNN-LPLQLKGHTIWVNSLAFSPDELK-----LASAGYSR 260
Query: 706 SVRVWDTTAGRCERILTG 759
+V+VWD G+C L G
Sbjct: 261 TVKVWDCLTGKCLETLKG 278
>ref|NP_081389.1| WD repeat-containing protein 5B [Mus musculus].
Length = 328
Score = 102 bits (255), Expect = 3e-22
Identities = 55/176 (31%), Positives = 90/176 (51%), Gaps = 1/176 (0%)
Frame = +1
Query: 352 SLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDG 531
+L GHS A+ SV FSP G++LAS + D + W T GH + ++WS D
Sbjct: 34 TLAGHSAAISSVKFSPNGEWLASSAADALIIIWGAYDGNCKKTLYGHSLEISDVAWSSDS 93
Query: 532 KKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSV 711
+L S + + +WD +GK + + L GHS ++ + NP + S S D SV
Sbjct: 94 SRLVSASDDKTLKVWDMRSGKCL-KTLKGHSDFVFCCDF-----NPPSNLIVSGSFDESV 147
Query: 712 RVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVWRAHDGVLCRTL 876
++W+ G+C + L+ H+ ++ + + +G L+ S S D ++W A G RTL
Sbjct: 148 KIWEVKTGKCLKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWDAASGQCLRTL 203
Score = 84.3 bits (207), Expect = 1e-16
Identities = 52/179 (29%), Positives = 90/179 (50%), Gaps = 2/179 (1%)
Frame = +1
Query: 343 CTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWS 522
C +L GHS + VA+S L S S D T++ WD+ + T +GH +V ++
Sbjct: 73 CKKTLYGHSLEISDVAWSSDSSRLVSASDDKTLKVWDMRSGKCLKTLKGHSDFVFCCDFN 132
Query: 523 PDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKD 702
P + SG + + +W+ TGK + + L+ HS I+A+++ N + S S D
Sbjct: 133 PPSNLIVSGSFDESVKIWEVKTGKCL-KTLSAHSDPISAVNF-----NCNGSLIVSGSYD 186
Query: 703 GSVRVWDTTAGRCERILTGH-TQSVTCLRWGGDG-LLYSASQDRTIKVWRAHDGVLCRT 873
G R+WD +G+C R L V+ +++ +G + +A+ D T+K+W G +T
Sbjct: 187 GLCRIWDAASGQCLRTLADEGNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKT 245
Score = 83.2 bits (204), Expect = 2e-16
Identities = 46/172 (26%), Positives = 86/172 (50%), Gaps = 4/172 (2%)
Frame = +1
Query: 340 RCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISW 519
+C +L+GHS+ V F+P + SGS D +V+ W++ T T H + ++++
Sbjct: 114 KCLKTLKGHSDFVFCCDFNPPSNLIVSGSFDESVKIWEVKTGKCLKTLSAHSDPISAVNF 173
Query: 520 SPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSK 699
+ +G + SG +G +WD ++G Q R LA + + +P +Y+ +++
Sbjct: 174 NCNGSLIVSGSYDGLCRIWDAASG-QCLRTLADEGNPPVSF----VKFSPNGKYILTATL 228
Query: 700 DGSVRVWDTTAGRCERILTGHTQSVTCL----RWGGDGLLYSASQDRTIKVW 843
D ++++WD + GRC + TGH CL G + S S+D + +W
Sbjct: 229 DNTLKLWDYSRGRCLKTYTGHKNEKYCLFASFSVTGRKWVVSGSEDNMVYIW 280
Score = 62.0 bits (149), Expect = 6e-10
Identities = 47/174 (27%), Positives = 78/174 (44%), Gaps = 6/174 (3%)
Frame = +1
Query: 340 RCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLS-IS 516
+C +L HS+ + +V F+ G + SGS D R WD ++ T + +S +
Sbjct: 156 KCLKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWDAASGQCLRTLADEGNPPVSFVK 215
Query: 517 WSPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHS--KWITALSWEPLHANPECRYVAS 690
+SP+GK + + + + LWD S G+ + + GH K+ S+ ++V S
Sbjct: 216 FSPNGKYILTATLDNTLKLWDYSRGRCL-KTYTGHKNEKYCLFASFSVTGR----KWVVS 270
Query: 691 SSKDGSVRVWDTTAGRCERILTGHTQ---SVTCLRWGGDGLLYSASQDRTIKVW 843
S+D V +W+ + L GHT S C + D+TIKVW
Sbjct: 271 GSEDNMVYIWNLQTKEIVQRLQGHTDVVISAACHPTKNIIASAALENDKTIKVW 324
>ref|NP_038653.1| platelet-activating factor acetylhydrolase IB subunit alpha [Mus
musculus].
Length = 410
Score = 97.4 bits (241), Expect = 1e-20
Identities = 58/196 (29%), Positives = 90/196 (45%), Gaps = 21/196 (10%)
Frame = +1
Query: 352 SLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDG 531
+L+GH+++V ++F +GK LAS S D T++ WD T GH H V S++ P+G
Sbjct: 145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNG 204
Query: 532 KKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSV 711
+ S ++ I +W+ TG V + GH +W+ + N + +AS S D +V
Sbjct: 205 DHIVSASRDKTIKMWEVQTGYCV-KTFTGHREWV-----RMVRPNQDGTLIASCSNDQTV 258
Query: 712 RVWDTTAGRCERILTGHTQSVTCLRWGGDG---------------------LLYSASQDR 828
RVW C+ L H V C+ W + L S S+D+
Sbjct: 259 RVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 318
Query: 829 TIKVWRAHDGVLCRTL 876
TIK+W G+ TL
Sbjct: 319 TIKMWDVSTGMCLMTL 334
Score = 91.7 bits (226), Expect = 7e-19
Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 1/165 (0%)
Frame = +1
Query: 352 SLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDG 531
+L GH V V F P + S S D T++ WD T T +GH V IS+ G
Sbjct: 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 162
Query: 532 KKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSV 711
K LAS + I LWD G + R + GH +++++ P ++ S+S+D ++
Sbjct: 163 KLLASCSADMTIKLWD-FQGFECIRTMHGHDHNVSSVA-----IMPNGDHIVSASRDKTI 216
Query: 712 RVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVW 843
++W+ G C + TGH + V +R DG L+ S S D+T++VW
Sbjct: 217 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
Score = 88.6 bits (218), Expect = 6e-18
Identities = 54/184 (29%), Positives = 85/184 (46%), Gaps = 17/184 (9%)
Frame = +1
Query: 343 CTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWS 522
C ++ GH V SVA P G ++ S S D T++ W++ T T GHR WV + +
Sbjct: 184 CIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN 243
Query: 523 PDGKKLASGCKNGQ-ILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECR------- 678
DG +AS C N Q + +W +T K+ L H + +SW P +
Sbjct: 244 QDGTLIAS-CSNDQTVRVWVVAT-KECKAELREHEHVVECISWAPESSYSSISEATGSET 301
Query: 679 --------YVASSSKDGSVRVWDTTAGRCERILTGHTQSVT-CLRWGGDGLLYSASQDRT 831
++ S S+D ++++WD + G C L GH V L G + S + D+T
Sbjct: 302 KKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT 361
Query: 832 IKVW 843
++VW
Sbjct: 362 LRVW 365
Score = 82.8 bits (203), Expect = 3e-16
Identities = 57/188 (30%), Positives = 86/188 (45%), Gaps = 21/188 (11%)
Frame = +1
Query: 343 CTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWS 522
C + GH E V V + G +AS S D TVR W ++T+ + H H V ISW+
Sbjct: 226 CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWA 285
Query: 523 PD--------------------GKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITAL 642
P+ G L SG ++ I +WD STG + L GH W+ +
Sbjct: 286 PESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL-MTLVGHDNWVRGV 344
Query: 643 SWEPLHANPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSAS 819
+ H+ +++ S + D ++RVWD RC + L H VT L + + + S
Sbjct: 345 LF---HSGG--KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGS 399
Query: 820 QDRTIKVW 843
D+T+KVW
Sbjct: 400 VDQTVKVW 407
Score = 62.4 bits (150), Expect = 4e-10
Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 2/135 (1%)
Frame = +1
Query: 475 FTCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEP 654
+ GHR V + + P + S ++ I +WD TG R L GH+ + +S++
Sbjct: 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG-DFERTLKGHTDSVQDISFD- 159
Query: 655 LHANPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQSVT--CLRWGGDGLLYSASQDR 828
H+ + +AS S D ++++WD C R + GH +V+ + GD ++ SAS+D+
Sbjct: 160 -HSG---KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIV-SASRDK 214
Query: 829 TIKVWRAHDGVLCRT 873
TIK+W G +T
Sbjct: 215 TIKMWEVQTGYCVKT 229
Score = 61.6 bits (148), Expect = 8e-10
Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 20/153 (13%)
Frame = +1
Query: 325 VRAVTRCTSSLEGHSEAVISVAFSPT--------------------GKYLASGSGDTTVR 444
V A C + L H V ++++P G +L SGS D T++
Sbjct: 262 VVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 321
Query: 445 FWDLSTETPHFTCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHS 624
WD+ST T GH +WV + + GK + S + + +WD K+ + L H
Sbjct: 322 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD-YKNKRCMKTLNAHE 380
Query: 625 KWITALSWEPLHANPECRYVASSSKDGSVRVWD 723
++T+L + + YV + S D +V+VW+
Sbjct: 381 HFVTSLDF-----HKTAPYVVTGSVDQTVKVWE 408
>ref|NP_598727.1| TAF5-like RNA polymerase II p300/CBP-associated factor-associated
factor 65 kDa subunit 5L [Mus musculus].
Length = 589
Score = 95.9 bits (237), Expect = 4e-20
Identities = 56/163 (34%), Positives = 83/163 (50%), Gaps = 1/163 (0%)
Frame = +1
Query: 358 EGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGKK 537
+GH+ V V SP Y ASGS D T R W P GH V + + P+
Sbjct: 381 QGHAYPVWDVDISPFSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNY 440
Query: 538 LASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSVRV 717
LA+G + + LW G V R GH + +LS+ +P +Y+AS+ +D +++
Sbjct: 441 LATGSTDKTVRLWSAQQGNSV-RLFTGHRGPVLSLSF-----SPNGKYLASAGEDQRLKL 494
Query: 718 WDTTAGRCERILTGHTQSVTCLRWGGD-GLLYSASQDRTIKVW 843
WD +G + L GHT S+T L + D GL+ SAS D +++VW
Sbjct: 495 WDLASGTLFKELRGHTDSITSLAFSPDSGLIASASMDNSVRVW 537
Score = 87.8 bits (216), Expect = 1e-17
Identities = 52/127 (40%), Positives = 73/127 (57%)
Frame = +1
Query: 361 GHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGKKL 540
GH V V F P YLA+GS D TVR W GHR VLS+S+SP+GK L
Sbjct: 424 GHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLSFSPNGKYL 483
Query: 541 ASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSVRVW 720
AS ++ ++ LWD ++G + + L GH+ IT+L++ +P+ +AS+S D SVRVW
Sbjct: 484 ASAGEDQRLKLWDLASG-TLFKELRGHTDSITSLAF-----SPDSGLIASASMDNSVRVW 537
Query: 721 DTTAGRC 741
D + C
Sbjct: 538 DIRSTCC 544
>ref|NP_081630.2| POC1 centriolar protein homolog A [Mus musculus].
Length = 405
Score = 91.7 bits (226), Expect = 7e-19
Identities = 53/163 (32%), Positives = 88/163 (53%), Gaps = 1/163 (0%)
Frame = +1
Query: 358 EGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGKK 537
+GH +AV V FS K+LASGS D+T+ W + ++ + GH+ V +++SP G
Sbjct: 16 KGHRDAVTCVDFSLNTKHLASGSMDSTLMIWHMKPQSRAYRFTGHKDAVTCVNFSPSGHL 75
Query: 538 LASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSVRV 717
LASG ++ + +W P+ K H+ + + +H + + + ++S D +V+V
Sbjct: 76 LASGSRDKTVRIWVPNV-KGESTVFRAHTATVRS-----VHFCSDGQSLVTASDDKTVKV 129
Query: 718 WDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVW 843
W T R LT H V C ++ DG L+ SAS D+T+K+W
Sbjct: 130 WSTHRQRFLFSLTQHINWVRCAKFSPDGRLIVSASDDKTVKLW 172
Score = 76.3 bits (186), Expect = 3e-14
Identities = 50/172 (29%), Positives = 83/172 (48%), Gaps = 1/172 (0%)
Frame = +1
Query: 364 HSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGKKLA 543
H+ V SV F G+ L + S D TV+ W + F+ H +WV +SPDG+ +
Sbjct: 102 HTATVRSVHFCSDGQSLVTASDDKTVKVWSTHRQRFLFSLTQHINWVRCAKFSPDGRLIV 161
Query: 544 SGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSVRVWD 723
S + + LWD T ++ + H ++T + + H + C +A++ D +V+VWD
Sbjct: 162 SASDDKTVKLWD-KTSRECIHSYCEHGGFVTYVDF---HPSGTC--IAAAGMDNTVKVWD 215
Query: 724 TTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVWRAHDGVLCRTL 876
R + H+ +V L + G L +AS D T+K+ +G L TL
Sbjct: 216 ARTHRLLQHYQLHSAAVNALSFHPSGNYLITASSDSTLKILDLMEGRLLYTL 267
Score = 70.1 bits (170), Expect = 2e-12
Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 2/169 (1%)
Frame = +1
Query: 352 SLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWD-LSTETPHFTCQGHRHWVLSISWSPD 528
SL H V FSP G+ + S S D TV+ WD S E H C+ H +V + + P
Sbjct: 140 SLTQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECIHSYCE-HGGFVTYVDFHPS 198
Query: 529 GKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGS 708
G +A+ + + +WD T + + + HS + ALS+ +P Y+ ++S D +
Sbjct: 199 GTCIAAAGMDNTVKVWDARTHRLL-QHYQLHSAAVNALSF-----HPSGNYLITASSDST 252
Query: 709 VRVWDTTAGRCERILTGHTQSVTCLRWGGDGLLY-SASQDRTIKVWRAH 852
+++ D GR L GH T + + G + S D + VW+++
Sbjct: 253 LKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVMVWKSN 301
>ref|NP_536353.2| F-box/WD repeat-containing protein 7 isoform 2 [Mus musculus].
Length = 629
Score = 91.7 bits (226), Expect = 7e-19
Identities = 59/178 (33%), Positives = 87/178 (48%)
Frame = +1
Query: 343 CTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWS 522
C +L GH+ V + K + SGS D T+R WD+ T GH V + +
Sbjct: 375 CIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY- 431
Query: 523 PDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKD 702
DG+++ SG + + +WDP T + L GH+ + +L ++ +H V S S D
Sbjct: 432 -DGRRVVSGAYDFMVKVWDPETETCL-HTLQGHTNRVYSLQFDGIH-------VVSGSLD 482
Query: 703 GSVRVWDTTAGRCERILTGHTQSVTCLRWGGDGLLYSASQDRTIKVWRAHDGVLCRTL 876
S+RVWD G C LTGH QS+T D +L S + D T+K+W G +TL
Sbjct: 483 TSIRVWDVETGNCIHTLTGH-QSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTL 539
Score = 86.3 bits (212), Expect = 3e-17
Identities = 57/182 (31%), Positives = 88/182 (48%), Gaps = 3/182 (1%)
Frame = +1
Query: 340 RCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISW 519
+C L GH AV V + G+ + SG+ D V+ WD TET T QGH + V S+ +
Sbjct: 414 QCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF 471
Query: 520 SPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSK 699
DG + SG + I +WD TG + L GH + + + + S +
Sbjct: 472 --DGIHVVSGSLDTSIRVWDVETGNCI-HTLTGHQSLTSGMELKD-------NILVSGNA 521
Query: 700 DGSVRVWDTTAGRCERILTG---HTQSVTCLRWGGDGLLYSASQDRTIKVWRAHDGVLCR 870
D +V++WD G+C + L G H +VTCL++ + ++S D T+K+W G R
Sbjct: 522 DSTVKIWDIKTGQCLQTLQGPSKHQSAVTCLQF-NKNFVITSSDDGTVKLWDLKTGEFIR 580
Query: 871 TL 876
L
Sbjct: 581 NL 582
Score = 73.2 bits (178), Expect = 3e-13
Identities = 52/176 (29%), Positives = 83/176 (47%), Gaps = 2/176 (1%)
Frame = +1
Query: 355 LEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGK 534
L+GH + VI+ G + SGS D T++ W T T GH V WS +
Sbjct: 298 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQMR 352
Query: 535 K--LASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGS 708
+ SG + + +W+ TG+ + L GH+ + + LH + V S S+D +
Sbjct: 353 DNIIISGSTDRTLKVWNAETGECI-HTLYGHTSTVRCMH---LHE----KRVVSGSRDAT 404
Query: 709 VRVWDTTAGRCERILTGHTQSVTCLRWGGDGLLYSASQDRTIKVWRAHDGVLCRTL 876
+RVWD G+C +L GH +V C+++ G ++ S + D +KVW TL
Sbjct: 405 LRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVV-SGAYDFMVKVWDPETETCLHTL 459
>ref|NP_001171245.1| F-box/WD repeat-containing protein 7 isoform 1 [Mus musculus].
Length = 710
Score = 91.7 bits (226), Expect = 7e-19
Identities = 59/178 (33%), Positives = 87/178 (48%)
Frame = +1
Query: 343 CTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWS 522
C +L GH+ V + K + SGS D T+R WD+ T GH V + +
Sbjct: 456 CIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY- 512
Query: 523 PDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKD 702
DG+++ SG + + +WDP T + L GH+ + +L ++ +H V S S D
Sbjct: 513 -DGRRVVSGAYDFMVKVWDPETETCL-HTLQGHTNRVYSLQFDGIH-------VVSGSLD 563
Query: 703 GSVRVWDTTAGRCERILTGHTQSVTCLRWGGDGLLYSASQDRTIKVWRAHDGVLCRTL 876
S+RVWD G C LTGH QS+T D +L S + D T+K+W G +TL
Sbjct: 564 TSIRVWDVETGNCIHTLTGH-QSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTL 620
Score = 86.3 bits (212), Expect = 3e-17
Identities = 57/182 (31%), Positives = 88/182 (48%), Gaps = 3/182 (1%)
Frame = +1
Query: 340 RCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISW 519
+C L GH AV V + G+ + SG+ D V+ WD TET T QGH + V S+ +
Sbjct: 495 QCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF 552
Query: 520 SPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSK 699
DG + SG + I +WD TG + L GH + + + + S +
Sbjct: 553 --DGIHVVSGSLDTSIRVWDVETGNCI-HTLTGHQSLTSGMELKD-------NILVSGNA 602
Query: 700 DGSVRVWDTTAGRCERILTG---HTQSVTCLRWGGDGLLYSASQDRTIKVWRAHDGVLCR 870
D +V++WD G+C + L G H +VTCL++ + ++S D T+K+W G R
Sbjct: 603 DSTVKIWDIKTGQCLQTLQGPSKHQSAVTCLQF-NKNFVITSSDDGTVKLWDLKTGEFIR 661
Query: 871 TL 876
L
Sbjct: 662 NL 663
Score = 73.2 bits (178), Expect = 3e-13
Identities = 52/176 (29%), Positives = 83/176 (47%), Gaps = 2/176 (1%)
Frame = +1
Query: 355 LEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGK 534
L+GH + VI+ G + SGS D T++ W T T GH V WS +
Sbjct: 379 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQMR 433
Query: 535 K--LASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGS 708
+ SG + + +W+ TG+ + L GH+ + + LH + V S S+D +
Sbjct: 434 DNIIISGSTDRTLKVWNAETGECI-HTLYGHTSTVRCMH---LHE----KRVVSGSRDAT 485
Query: 709 VRVWDTTAGRCERILTGHTQSVTCLRWGGDGLLYSASQDRTIKVWRAHDGVLCRTL 876
+RVWD G+C +L GH +V C+++ G ++ S + D +KVW TL
Sbjct: 486 LRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVV-SGAYDFMVKVWDPETETCLHTL 540
>ref|NP_001171244.1| F-box/WD repeat-containing protein 7 isoform 1 [Mus musculus].
Length = 710
Score = 91.7 bits (226), Expect = 7e-19
Identities = 59/178 (33%), Positives = 87/178 (48%)
Frame = +1
Query: 343 CTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWS 522
C +L GH+ V + K + SGS D T+R WD+ T GH V + +
Sbjct: 456 CIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY- 512
Query: 523 PDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKD 702
DG+++ SG + + +WDP T + L GH+ + +L ++ +H V S S D
Sbjct: 513 -DGRRVVSGAYDFMVKVWDPETETCL-HTLQGHTNRVYSLQFDGIH-------VVSGSLD 563
Query: 703 GSVRVWDTTAGRCERILTGHTQSVTCLRWGGDGLLYSASQDRTIKVWRAHDGVLCRTL 876
S+RVWD G C LTGH QS+T D +L S + D T+K+W G +TL
Sbjct: 564 TSIRVWDVETGNCIHTLTGH-QSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTL 620
Score = 86.3 bits (212), Expect = 3e-17
Identities = 57/182 (31%), Positives = 88/182 (48%), Gaps = 3/182 (1%)
Frame = +1
Query: 340 RCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISW 519
+C L GH AV V + G+ + SG+ D V+ WD TET T QGH + V S+ +
Sbjct: 495 QCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF 552
Query: 520 SPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSK 699
DG + SG + I +WD TG + L GH + + + + S +
Sbjct: 553 --DGIHVVSGSLDTSIRVWDVETGNCI-HTLTGHQSLTSGMELKD-------NILVSGNA 602
Query: 700 DGSVRVWDTTAGRCERILTG---HTQSVTCLRWGGDGLLYSASQDRTIKVWRAHDGVLCR 870
D +V++WD G+C + L G H +VTCL++ + ++S D T+K+W G R
Sbjct: 603 DSTVKIWDIKTGQCLQTLQGPSKHQSAVTCLQF-NKNFVITSSDDGTVKLWDLKTGEFIR 661
Query: 871 TL 876
L
Sbjct: 662 NL 663
Score = 73.2 bits (178), Expect = 3e-13
Identities = 52/176 (29%), Positives = 83/176 (47%), Gaps = 2/176 (1%)
Frame = +1
Query: 355 LEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGK 534
L+GH + VI+ G + SGS D T++ W T T GH V WS +
Sbjct: 379 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQMR 433
Query: 535 K--LASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGS 708
+ SG + + +W+ TG+ + L GH+ + + LH + V S S+D +
Sbjct: 434 DNIIISGSTDRTLKVWNAETGECI-HTLYGHTSTVRCMH---LHE----KRVVSGSRDAT 485
Query: 709 VRVWDTTAGRCERILTGHTQSVTCLRWGGDGLLYSASQDRTIKVWRAHDGVLCRTL 876
+RVWD G+C +L GH +V C+++ G ++ S + D +KVW TL
Sbjct: 486 LRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVV-SGAYDFMVKVWDPETETCLHTL 540
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,532,828
Number of extensions: 1015314
Number of successful extensions: 6773
Number of sequences better than 1.0e-05: 159
Number of HSP's gapped: 5603
Number of HSP's successfully gapped: 393
Length of query: 292
Length of database: 15,617,559
Length adjustment: 100
Effective length of query: 192
Effective length of database: 12,613,959
Effective search space: 2421880128
Effective search space used: 2421880128
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014089
(876 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060566.2| notchless protein homolog 1 isoform a [Homo sap... 552 e-157
Alignment gi|NP_438172.1| WD repeat-containing protein 5 [Homo sapiens]. 112 4e-25
Alignment gi|NP_060058.1| WD repeat-containing protein 5 [Homo sapiens]. 112 4e-25
Alignment gi|NP_061942.2| WD repeat-containing protein 5B [Homo sapiens]. 105 5e-23
Alignment gi|NP_001038941.1| WD repeat-containing protein 38 [Homo sapien... 103 2e-22
Alignment gi|NP_849143.1| WD repeat-containing protein 69 [Homo sapiens]. 102 3e-22
Alignment gi|NP_000421.1| platelet-activating factor acetylhydrolase IB s... 97 1e-20
Alignment gi|NP_060726.3| ribosome biogenesis protein WDR12 [Homo sapiens]. 93 4e-19
Alignment gi|NP_055224.1| TAF5-like RNA polymerase II p300/CBP-associated... 93 4e-19
Alignment gi|NP_001013433.1| F-box/WD repeat-containing protein 7 isoform... 92 8e-19
>ref|NP_060566.2| notchless protein homolog 1 isoform a [Homo sapiens].
Length = 485
Score = 552 bits (1422), Expect = e-157
Identities = 263/272 (96%), Positives = 270/272 (99%)
Frame = +1
Query: 61 RDVQRLLVQFQDEGGQLLGSPFDVPVDITPDKLQLVCNALLAQEDPLPLAFYVHDAEIVS 240
RDVQRLLVQFQDEGGQLLGSPFDVPVDITPD+LQLVCNALLAQEDPLPLAF+VHDAEIVS
Sbjct: 12 RDVQRLLVQFQDEGGQLLGSPFDVPVDITPDRLQLVCNALLAQEDPLPLAFFVHDAEIVS 71
Query: 241 SLGKTLESQAVETEKVLDIIYQPQAVFKVRAVTRCTSSLEGHSEAVISVAFSPTGKYLAS 420
SLGKTLESQAVETEKVLDIIYQPQA+F+VRAVTRCTSSLEGHSEAVISVAFSPTGKYLAS
Sbjct: 72 SLGKTLESQAVETEKVLDIIYQPQAIFRVRAVTRCTSSLEGHSEAVISVAFSPTGKYLAS 131
Query: 421 GSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGKQV 600
GSGDTTVRFWDLSTETPHFTC+GHRHWVLSISWSPDG+KLASGCKNGQILLWDPSTGKQV
Sbjct: 132 GSGDTTVRFWDLSTETPHFTCKGHRHWVLSISWSPDGRKLASGCKNGQILLWDPSTGKQV 191
Query: 601 GRALAGHSKWITALSWEPLHANPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQSVTC 780
GR LAGHSKWIT LSWEPLHANPECRYVASSSKDGSVR+WDTTAGRCERILTGHTQSVTC
Sbjct: 192 GRTLAGHSKWITGLSWEPLHANPECRYVASSSKDGSVRIWDTTAGRCERILTGHTQSVTC 251
Query: 781 LRWGGDGLLYSASQDRTIKVWRAHDGVLCRTL 876
LRWGGDGLLYSASQDRTIKVWRAHDGVLCRTL
Sbjct: 252 LRWGGDGLLYSASQDRTIKVWRAHDGVLCRTL 283
Score = 79.3 bits (194), Expect = 4e-15
Identities = 58/211 (27%), Positives = 87/211 (41%), Gaps = 43/211 (20%)
Frame = +1
Query: 340 RCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISW 519
RC L GH+++V + + G L S S D T++ W T QGH HWV +++
Sbjct: 237 RCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMAL 295
Query: 520 SPD------------------------------------------GKKLASGCKNGQILL 573
S D ++L SG + + L
Sbjct: 296 STDYALRTGAFEPAEASVNPQDLQGSLQELKERALSRYNLVRGQGPERLVSGSDDFTLFL 355
Query: 574 WDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSVRVWDTTAGRCERIL 753
W P+ K+ + GH I + + +P+ R VAS+S D S+++WD G+ L
Sbjct: 356 WSPAEDKKPLTRMTGHQALINQVLF-----SPDSRIVASASFDKSIKLWDGRTGKYLASL 410
Query: 754 TGHTQSVTCLRWGGDG-LLYSASQDRTIKVW 843
GH +V + W D LL S S D T+KVW
Sbjct: 411 RGHVAAVYQIAWSADSRLLVSGSSDSTLKVW 441
Score = 77.4 bits (189), Expect = 2e-14
Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 2/147 (1%)
Frame = +1
Query: 412 LASGSGDTTVRFWDLSTETPHFT-CQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPST 588
L SGS D T+ W + + T GH+ + + +SPD + +AS + I LWD T
Sbjct: 344 LVSGSDDFTLFLWSPAEDKKPLTRMTGHQALINQVLFSPDSRIVASASFDKSIKLWDGRT 403
Query: 589 GKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQ 768
GK + +L GH + ++W + + R + S S D +++VWD A + L GH
Sbjct: 404 GKYLA-SLRGHVAAVYQIAW-----SADSRLLVSGSSDSTLKVWDVKAQKLAMDLPGHAD 457
Query: 769 SVTCLRWGGDG-LLYSASQDRTIKVWR 846
V + W DG + S +D+ +++WR
Sbjct: 458 EVYAVDWSPDGQRVASGGKDKCLRIWR 484
Score = 71.6 bits (174), Expect = 9e-13
Identities = 39/122 (31%), Positives = 62/122 (50%)
Frame = +1
Query: 355 LEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGK 534
+ GH + V FSP + +AS S D +++ WD T + +GH V I+WS D +
Sbjct: 368 MTGHQALINQVLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWSADSR 427
Query: 535 KLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSVR 714
L SG + + +WD K + L GH+ + A+ W +P+ + VAS KD +R
Sbjct: 428 LLVSGSSDSTLKVWDVKAQK-LAMDLPGHADEVYAVDW-----SPDGQRVASGGKDKCLR 481
Query: 715 VW 720
+W
Sbjct: 482 IW 483
Score = 66.2 bits (160), Expect = 4e-11
Identities = 29/76 (38%), Positives = 46/76 (60%)
Frame = +1
Query: 349 SSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPD 528
+SL GH AV +A+S + L SGS D+T++ WD+ + GH V ++ WSPD
Sbjct: 408 ASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQKLAMDLPGHADEVYAVDWSPD 467
Query: 529 GKKLASGCKNGQILLW 576
G+++ASG K+ + +W
Sbjct: 468 GQRVASGGKDKCLRIW 483
>ref|NP_438172.1| WD repeat-containing protein 5 [Homo sapiens].
Length = 334
Score = 112 bits (280), Expect = 4e-25
Identities = 59/176 (33%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Frame = +1
Query: 352 SLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDG 531
+L GH++AV SV FSP G++LAS S D ++ W T GH+ + ++WS D
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 532 KKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSV 711
L S + + +WD S+GK + + L GHS ++ ++ NP+ + S S D SV
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCL-KTLKGHSNYVFCCNF-----NPQSNLIVSGSFDESV 153
Query: 712 RVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVWRAHDGVLCRTL 876
R+WD G+C + L H+ V+ + + DG L+ S+S D ++W G +TL
Sbjct: 154 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 209
Score = 83.2 bits (204), Expect = 3e-16
Identities = 43/172 (25%), Positives = 85/172 (49%), Gaps = 4/172 (2%)
Frame = +1
Query: 340 RCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISW 519
+C +L+GHS V F+P + SGS D +VR WD+ T T H V ++ +
Sbjct: 120 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 179
Query: 520 SPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSK 699
+ DG + S +G +WD ++G+ + + + ++ + + +P +Y+ +++
Sbjct: 180 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF-----SPNGKYILAATL 234
Query: 700 DGSVRVWDTTAGRCERILTGHTQSVTCL----RWGGDGLLYSASQDRTIKVW 843
D ++++WD + G+C + TGH C+ G + S S+D + +W
Sbjct: 235 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 286
Score = 75.5 bits (184), Expect = 6e-14
Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 1/135 (0%)
Frame = +1
Query: 475 FTCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEP 654
FT GH V S+ +SP+G+ LAS + I +W GK + ++GH I+ ++W
Sbjct: 39 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAW-- 95
Query: 655 LHANPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQSVTCLRWG-GDGLLYSASQDRT 831
+ + + S+S D ++++WD ++G+C + L GH+ V C + L+ S S D +
Sbjct: 96 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 152
Query: 832 IKVWRAHDGVLCRTL 876
+++W G +TL
Sbjct: 153 VRIWDVKTGKCLKTL 167
>ref|NP_060058.1| WD repeat-containing protein 5 [Homo sapiens].
Length = 334
Score = 112 bits (280), Expect = 4e-25
Identities = 59/176 (33%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Frame = +1
Query: 352 SLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDG 531
+L GH++AV SV FSP G++LAS S D ++ W T GH+ + ++WS D
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 532 KKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSV 711
L S + + +WD S+GK + + L GHS ++ ++ NP+ + S S D SV
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCL-KTLKGHSNYVFCCNF-----NPQSNLIVSGSFDESV 153
Query: 712 RVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVWRAHDGVLCRTL 876
R+WD G+C + L H+ V+ + + DG L+ S+S D ++W G +TL
Sbjct: 154 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 209
Score = 83.2 bits (204), Expect = 3e-16
Identities = 43/172 (25%), Positives = 85/172 (49%), Gaps = 4/172 (2%)
Frame = +1
Query: 340 RCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISW 519
+C +L+GHS V F+P + SGS D +VR WD+ T T H V ++ +
Sbjct: 120 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 179
Query: 520 SPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSK 699
+ DG + S +G +WD ++G+ + + + ++ + + +P +Y+ +++
Sbjct: 180 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF-----SPNGKYILAATL 234
Query: 700 DGSVRVWDTTAGRCERILTGHTQSVTCL----RWGGDGLLYSASQDRTIKVW 843
D ++++WD + G+C + TGH C+ G + S S+D + +W
Sbjct: 235 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 286
Score = 75.5 bits (184), Expect = 6e-14
Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 1/135 (0%)
Frame = +1
Query: 475 FTCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEP 654
FT GH V S+ +SP+G+ LAS + I +W GK + ++GH I+ ++W
Sbjct: 39 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAW-- 95
Query: 655 LHANPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQSVTCLRWG-GDGLLYSASQDRT 831
+ + + S+S D ++++WD ++G+C + L GH+ V C + L+ S S D +
Sbjct: 96 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 152
Query: 832 IKVWRAHDGVLCRTL 876
+++W G +TL
Sbjct: 153 VRIWDVKTGKCLKTL 167
>ref|NP_061942.2| WD repeat-containing protein 5B [Homo sapiens].
Length = 330
Score = 105 bits (262), Expect = 5e-23
Identities = 59/180 (32%), Positives = 93/180 (51%), Gaps = 1/180 (0%)
Frame = +1
Query: 340 RCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISW 519
+CT L GH+EAV SV FSP G++LAS S D + W T GH + ++W
Sbjct: 34 KCT--LVGHTEAVSSVKFSPNGEWLASSSADRLIIIWGAYDGKYEKTLYGHNLEISDVAW 91
Query: 520 SPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSK 699
S D +L S + + LWD +GK + + L GHS ++ ++ NP + S S
Sbjct: 92 SSDSSRLVSASDDKTLKLWDVRSGKCL-KTLKGHSNYVFCCNF-----NPPSNLIISGSF 145
Query: 700 DGSVRVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVWRAHDGVLCRTL 876
D +V++W+ G+C + L+ H+ V+ + + G L+ S S D ++W A G +TL
Sbjct: 146 DETVKIWEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGLCRIWDAASGQCLKTL 205
Score = 82.4 bits (202), Expect = 5e-16
Identities = 43/172 (25%), Positives = 85/172 (49%), Gaps = 4/172 (2%)
Frame = +1
Query: 340 RCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISW 519
+C +L+GHS V F+P + SGS D TV+ W++ T T H V ++ +
Sbjct: 116 KCLKTLKGHSNYVFCCNFNPPSNLIISGSFDETVKIWEVKTGKCLKTLSAHSDPVSAVHF 175
Query: 520 SPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSK 699
+ G + SG +G +WD ++G+ + + + ++ + + +P +Y+ +++
Sbjct: 176 NCSGSLIVSGSYDGLCRIWDAASGQCLKTLVDDDNPPVSFVKF-----SPNGKYILTATL 230
Query: 700 DGSVRVWDTTAGRCERILTGHTQSVTCL----RWGGDGLLYSASQDRTIKVW 843
D ++++WD + GRC + TGH C+ G + S S+D + +W
Sbjct: 231 DNTLKLWDYSRGRCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 282
Score = 61.6 bits (148), Expect = 9e-10
Identities = 47/177 (26%), Positives = 86/177 (48%), Gaps = 6/177 (3%)
Frame = +1
Query: 340 RCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLS-IS 516
+C +L HS+ V +V F+ +G + SGS D R WD ++ T + +S +
Sbjct: 158 KCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGLCRIWDAASGQCLKTLVDDDNPPVSFVK 217
Query: 517 WSPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHS--KWITALSWEPLHANPECRYVAS 690
+SP+GK + + + + LWD S G+ + + GH K+ ++ +++ S
Sbjct: 218 FSPNGKYILTATLDNTLKLWDYSRGRCL-KTYTGHKNEKYCIFANFSVTGG----KWIVS 272
Query: 691 SSKDGSVRVWDTTAGRCERILTGHTQSV-TCLRWGGDGLLYSAS--QDRTIKVWRAH 852
S+D V +W+ + L GHT V + + L+ SA+ D+TIK+W ++
Sbjct: 273 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISAACHPTENLIASAALENDKTIKLWMSN 329
>ref|NP_001038941.1| WD repeat-containing protein 38 [Homo sapiens].
Length = 314
Score = 103 bits (257), Expect = 2e-22
Identities = 60/167 (35%), Positives = 92/167 (55%), Gaps = 3/167 (1%)
Frame = +1
Query: 355 LEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGK 534
L GH+ V FSP G AS S D TVR WD++ +GH+ V ++S+SPD +
Sbjct: 59 LGGHTGPVKFCRFSPDGHLFASASCDCTVRLWDVARAKCLRVLKGHQRSVETVSFSPDSR 118
Query: 535 KLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSVR 714
+LASG + +++LWD +G Q+ R L GH I + + +P +A+ S D +V
Sbjct: 119 QLASGGWDKRVMLWDVQSG-QMLRLLVGHRDSIQSSDF-----SPTVNCLATGSWDSTVH 172
Query: 715 VWD---TTAGRCERILTGHTQSVTCLRWGGDGLLYSASQDRTIKVWR 846
+WD T + L GH+ +++CL + GLL S S D+TI +W+
Sbjct: 173 IWDLRMVTPAVSHQALEGHSANISCLCYSASGLLASGSWDKTIHIWK 219
Score = 82.4 bits (202), Expect = 5e-16
Identities = 60/188 (31%), Positives = 85/188 (45%), Gaps = 6/188 (3%)
Frame = +1
Query: 331 AVTRCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLS 510
A +C L+GH +V +V+FSP + LASG D V WD+ + GHR + S
Sbjct: 93 ARAKCLRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWDVQSGQMLRLLVGHRDSIQS 152
Query: 511 ISWSPDGKKLASGCKNGQILLWD-----PSTGKQVGRALAGHSKWITALSWEPLHANPEC 675
+SP LA+G + + +WD P+ Q AL GHS I+ L +
Sbjct: 153 SDFSPTVNCLATGSWDSTVHIWDLRMVTPAVSHQ---ALEGHSANISCLCYS------AS 203
Query: 676 RYVASSSKDGSVRVWDTTAGRCERILTGHTQSVTCLRWGGDGL-LYSASQDRTIKVWRAH 852
+AS S D ++ +W T L GH V + + D L L SA R +KVW +
Sbjct: 204 GLLASGSWDKTIHIWKPTTSSLLIQLKGHVTWVKSIAFSPDELWLASAGYSRMVKVWDCN 263
Query: 853 DGVLCRTL 876
G TL
Sbjct: 264 TGKCLETL 271
Score = 80.9 bits (198), Expect = 1e-15
Identities = 54/163 (33%), Positives = 84/163 (51%), Gaps = 4/163 (2%)
Frame = +1
Query: 355 LEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETP---HFTCQGHRHWVLSISWSP 525
L GH +++ S FSPT LA+GS D+TV WDL TP H +GH + + +S
Sbjct: 143 LVGHRDSIQSSDFSPTVNCLATGSWDSTVHIWDLRMVTPAVSHQALEGHSANISCLCYSA 202
Query: 526 DGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDG 705
G LASG + I +W P+T + + L GH W+ ++++ +P+ ++AS+
Sbjct: 203 SGL-LASGSWDKTIHIWKPTTSSLLIQ-LKGHVTWVKSIAF-----SPDELWLASAGYSR 255
Query: 706 SVRVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRT 831
V+VWD G+C L G + DG +L S + D+T
Sbjct: 256 MVKVWDCNTGKCLETLKGVLDVAHTCAFTPDGKILVSGAADQT 298
>ref|NP_849143.1| WD repeat-containing protein 69 [Homo sapiens].
Length = 415
Score = 102 bits (255), Expect = 3e-22
Identities = 51/172 (29%), Positives = 97/172 (56%), Gaps = 2/172 (1%)
Frame = +1
Query: 340 RCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISW 519
+C + GH+ ++ ++F+P +A+GS DTT + WD+ +T +GH ++S+S+
Sbjct: 168 KCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQNGEEVYTLRGHSAEIISLSF 227
Query: 520 SPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSK 699
+ G ++ +G + +++WD TG++V L GH I++ S+ N +C + + S
Sbjct: 228 NTSGDRIITGSFDHTVVVWDADTGRKV-NILIGHCAEISSASF-----NWDCSLILTGSM 281
Query: 700 DGSVRVWDTTAGRCERILTGHTQSV--TCLRWGGDGLLYSASQDRTIKVWRA 849
D + ++WD T G+C LTGH + +C + G L+ +AS D T +++ A
Sbjct: 282 DKTCKLWDATNGKCVATLTGHDDEILDSCFDYTGK-LIATASADGTARIFSA 332
Score = 95.1 bits (235), Expect = 7e-20
Identities = 59/178 (33%), Positives = 93/178 (52%), Gaps = 2/178 (1%)
Frame = +1
Query: 349 SSLEGHSEAVISVAFS-PTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSP 525
++LEGH V ++AF+ P G +A+GS D T + W + T + T +GH ++ +S++P
Sbjct: 128 NTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNP 187
Query: 526 DGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDG 705
+A+G + LWD G++V L GHS I +LS+ N + + S D
Sbjct: 188 QSTLVATGSMDTTAKLWDIQNGEEV-YTLRGHSAEIISLSF-----NTSGDRIITGSFDH 241
Query: 706 SVRVWDTTAGRCERILTGHTQSVTCLRWGGD-GLLYSASQDRTIKVWRAHDGVLCRTL 876
+V VWD GR IL GH ++ + D L+ + S D+T K+W A +G TL
Sbjct: 242 TVVVWDADTGRKVNILIGHCAEISSASFNWDCSLILTGSMDKTCKLWDATNGKCVATL 299
Score = 80.5 bits (197), Expect = 2e-15
Identities = 53/170 (31%), Positives = 84/170 (49%), Gaps = 2/170 (1%)
Frame = +1
Query: 355 LEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISW-SPDG 531
L+ H + +VA + +G +GS D T + WD ++ T +GHR+ V +I++ +P G
Sbjct: 88 LKAHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELNTLEGHRNVVYAIAFNNPYG 147
Query: 532 KKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSV 711
K+A+G + LW TGK GH+ I LS+ NP+ VA+ S D +
Sbjct: 148 DKIATGSFDKTCKLWSVETGK-CYHTFRGHTAEIVCLSF-----NPQSTLVATGSMDTTA 201
Query: 712 RVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVWRAHDG 858
++WD G L GH+ + L + G + + S D T+ VW A G
Sbjct: 202 KLWDIQNGEEVYTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVWDADTG 251
Score = 80.1 bits (196), Expect = 2e-15
Identities = 53/210 (25%), Positives = 97/210 (46%), Gaps = 1/210 (0%)
Frame = +1
Query: 220 HDAEIVSSLGKTLESQAVETEKVLDIIYQPQAVFKVRAVTRCTSSLEGHSEAVISVAFSP 399
H AEI+S T ++++ + V R + L GH + S +F+
Sbjct: 218 HSAEIISLSFNT------SGDRIITGSFDHTVVVWDADTGRKVNILIGHCAEISSASFNW 271
Query: 400 TGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGKKLASGCKNGQILLWD 579
+ +GS D T + WD + T GH +L + GK +A+ +G ++
Sbjct: 272 DCSLILTGSMDKTCKLWDATNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFS 331
Query: 580 PSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSVRVWDTTAGRCERILTG 759
+T K + + L GH I+ +S+ NP+ ++ + S D + R+WD G+C ++L G
Sbjct: 332 AATRKCIAK-LEGHEGEISKISF-----NPQGNHLLTGSSDKTARIWDAQTGQCLQVLEG 385
Query: 760 HTQSVTCLRWGGDG-LLYSASQDRTIKVWR 846
HT + + G ++ + S+D T ++WR
Sbjct: 386 HTDEIFSCAFNYKGNIVITGSKDNTCRIWR 415
>ref|NP_000421.1| platelet-activating factor acetylhydrolase IB subunit alpha [Homo
sapiens].
Length = 410
Score = 97.4 bits (241), Expect = 1e-20
Identities = 58/196 (29%), Positives = 90/196 (45%), Gaps = 21/196 (10%)
Frame = +1
Query: 352 SLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDG 531
+L+GH+++V ++F +GK LAS S D T++ WD T GH H V S++ P+G
Sbjct: 145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNG 204
Query: 532 KKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSV 711
+ S ++ I +W+ TG V + GH +W+ + N + +AS S D +V
Sbjct: 205 DHIVSASRDKTIKMWEVQTGYCV-KTFTGHREWV-----RMVRPNQDGTLIASCSNDQTV 258
Query: 712 RVWDTTAGRCERILTGHTQSVTCLRWGGDG---------------------LLYSASQDR 828
RVW C+ L H V C+ W + L S S+D+
Sbjct: 259 RVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 318
Query: 829 TIKVWRAHDGVLCRTL 876
TIK+W G+ TL
Sbjct: 319 TIKMWDVSTGMCLMTL 334
Score = 91.7 bits (226), Expect = 8e-19
Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 1/165 (0%)
Frame = +1
Query: 352 SLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDG 531
+L GH V V F P + S S D T++ WD T T +GH V IS+ G
Sbjct: 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 162
Query: 532 KKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSV 711
K LAS + I LWD G + R + GH +++++ P ++ S+S+D ++
Sbjct: 163 KLLASCSADMTIKLWD-FQGFECIRTMHGHDHNVSSVA-----IMPNGDHIVSASRDKTI 216
Query: 712 RVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVW 843
++W+ G C + TGH + V +R DG L+ S S D+T++VW
Sbjct: 217 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
Score = 88.6 bits (218), Expect = 7e-18
Identities = 54/184 (29%), Positives = 85/184 (46%), Gaps = 17/184 (9%)
Frame = +1
Query: 343 CTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWS 522
C ++ GH V SVA P G ++ S S D T++ W++ T T GHR WV + +
Sbjct: 184 CIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN 243
Query: 523 PDGKKLASGCKNGQ-ILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECR------- 678
DG +AS C N Q + +W +T K+ L H + +SW P +
Sbjct: 244 QDGTLIAS-CSNDQTVRVWVVAT-KECKAELREHEHVVECISWAPESSYSSISEATGSET 301
Query: 679 --------YVASSSKDGSVRVWDTTAGRCERILTGHTQSVT-CLRWGGDGLLYSASQDRT 831
++ S S+D ++++WD + G C L GH V L G + S + D+T
Sbjct: 302 KKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT 361
Query: 832 IKVW 843
++VW
Sbjct: 362 LRVW 365
Score = 82.8 bits (203), Expect = 4e-16
Identities = 57/188 (30%), Positives = 86/188 (45%), Gaps = 21/188 (11%)
Frame = +1
Query: 343 CTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWS 522
C + GH E V V + G +AS S D TVR W ++T+ + H H V ISW+
Sbjct: 226 CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWA 285
Query: 523 PD--------------------GKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITAL 642
P+ G L SG ++ I +WD STG + L GH W+ +
Sbjct: 286 PESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL-MTLVGHDNWVRGV 344
Query: 643 SWEPLHANPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSAS 819
+ H+ +++ S + D ++RVWD RC + L H VT L + + + S
Sbjct: 345 LF---HSGG--KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGS 399
Query: 820 QDRTIKVW 843
D+T+KVW
Sbjct: 400 VDQTVKVW 407
Score = 62.4 bits (150), Expect = 5e-10
Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 2/135 (1%)
Frame = +1
Query: 475 FTCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEP 654
+ GHR V + + P + S ++ I +WD TG R L GH+ + +S++
Sbjct: 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG-DFERTLKGHTDSVQDISFD- 159
Query: 655 LHANPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQSVT--CLRWGGDGLLYSASQDR 828
H+ + +AS S D ++++WD C R + GH +V+ + GD ++ SAS+D+
Sbjct: 160 -HSG---KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIV-SASRDK 214
Query: 829 TIKVWRAHDGVLCRT 873
TIK+W G +T
Sbjct: 215 TIKMWEVQTGYCVKT 229
Score = 61.6 bits (148), Expect = 9e-10
Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 20/153 (13%)
Frame = +1
Query: 325 VRAVTRCTSSLEGHSEAVISVAFSPT--------------------GKYLASGSGDTTVR 444
V A C + L H V ++++P G +L SGS D T++
Sbjct: 262 VVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 321
Query: 445 FWDLSTETPHFTCQGHRHWVLSISWSPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHS 624
WD+ST T GH +WV + + GK + S + + +WD K+ + L H
Sbjct: 322 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD-YKNKRCMKTLNAHE 380
Query: 625 KWITALSWEPLHANPECRYVASSSKDGSVRVWD 723
++T+L + + YV + S D +V+VW+
Sbjct: 381 HFVTSLDF-----HKTAPYVVTGSVDQTVKVWE 408
>ref|NP_060726.3| ribosome biogenesis protein WDR12 [Homo sapiens].
Length = 423
Score = 92.8 bits (229), Expect = 4e-19
Identities = 59/168 (35%), Positives = 87/168 (51%), Gaps = 3/168 (1%)
Frame = +1
Query: 352 SLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDG 531
+L GH EAV SV +S + + S S D T+R WD+ + + T G++ + IS+SP
Sbjct: 252 TLSGHMEAVSSVLWSDAEE-ICSASWDHTIRVWDVESGSLKSTLTGNKVFNC-ISYSPLC 309
Query: 532 KKLASGCKNGQILLWDPST--GKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDG 705
K+LASG + I LWDP T G V +L H+ W+T++ W P H + + S S D
Sbjct: 310 KRLASGSTDRHIRLWDPRTKDGSLVSLSLTSHTGWVTSVKWSPTHE----QQLISGSLDN 365
Query: 706 SVRVWDTTAGRCERI-LTGHTQSVTCLRWGGDGLLYSASQDRTIKVWR 846
V++WDT + + L H V + W GLL S D + +R
Sbjct: 366 IVKLWDTRSCKAPLYDLAAHEDKVLSVDWTDTGLLLSGGADNKLYSYR 413
>ref|NP_055224.1| TAF5-like RNA polymerase II p300/CBP-associated factor-associated
factor 65 kDa subunit 5L isoform a [Homo sapiens].
Length = 589
Score = 92.8 bits (229), Expect = 4e-19
Identities = 53/163 (32%), Positives = 83/163 (50%), Gaps = 1/163 (0%)
Frame = +1
Query: 358 EGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGKK 537
+GH+ V + SP Y ASGS D T R W P GH V + + P+
Sbjct: 381 QGHAYPVWDLDISPYSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNY 440
Query: 538 LASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSVRV 717
LA+G + + LW G V R GH + +L++ +P +Y+AS+ +D +++
Sbjct: 441 LATGSTDKTVRLWSAQQGNSV-RLFTGHRGPVLSLAF-----SPNGKYLASAGEDQRLKL 494
Query: 718 WDTTAGRCERILTGHTQSVTCLRWGGD-GLLYSASQDRTIKVW 843
WD +G + L GHT ++T L + D GL+ SAS D +++VW
Sbjct: 495 WDLASGTLYKELRGHTDNITSLTFSPDSGLIASASMDNSVRVW 537
Score = 85.9 bits (211), Expect = 4e-17
Identities = 52/138 (37%), Positives = 75/138 (54%)
Frame = +1
Query: 361 GHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGKKL 540
GH V V F P YLA+GS D TVR W GHR VLS+++SP+GK L
Sbjct: 424 GHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNGKYL 483
Query: 541 ASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSVRVW 720
AS ++ ++ LWD ++G + + L GH+ IT+L++ +P+ +AS+S D SVRVW
Sbjct: 484 ASAGEDQRLKLWDLASG-TLYKELRGHTDNITSLTF-----SPDSGLIASASMDNSVRVW 537
Query: 721 DTTAGRCERILTGHTQSV 774
D C G + +
Sbjct: 538 DIRNTYCSAPADGSSSEL 555
Score = 80.5 bits (197), Expect = 2e-15
Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 1/175 (0%)
Frame = +1
Query: 355 LEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGK 534
L GH V S F L S S D ++R+WDL + T QGH + V + SP
Sbjct: 338 LRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPYSL 397
Query: 535 KLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGSVR 714
ASG + LW + R AGH + + + +P Y+A+ S D +VR
Sbjct: 398 YFASGSHDRTARLWSFDRTYPL-RIYAGHLADVDCVKF-----HPNSNYLATGSTDKTVR 451
Query: 715 VWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVWRAHDGVLCRTL 876
+W G R+ TGH V L + +G L SA +D+ +K+W G L + L
Sbjct: 452 LWSAQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASGTLYKEL 506
>ref|NP_001013433.1| F-box/WD repeat-containing protein 7 isoform 3 [Homo sapiens].
Length = 589
Score = 91.7 bits (226), Expect = 8e-19
Identities = 59/178 (33%), Positives = 87/178 (48%)
Frame = +1
Query: 343 CTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWS 522
C +L GH+ V + K + SGS D T+R WD+ T GH V + +
Sbjct: 335 CIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY- 391
Query: 523 PDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKD 702
DG+++ SG + + +WDP T + L GH+ + +L ++ +H V S S D
Sbjct: 392 -DGRRVVSGAYDFMVKVWDPETETCL-HTLQGHTNRVYSLQFDGIH-------VVSGSLD 442
Query: 703 GSVRVWDTTAGRCERILTGHTQSVTCLRWGGDGLLYSASQDRTIKVWRAHDGVLCRTL 876
S+RVWD G C LTGH QS+T D +L S + D T+K+W G +TL
Sbjct: 443 TSIRVWDVETGNCIHTLTGH-QSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTL 499
Score = 86.3 bits (212), Expect = 3e-17
Identities = 57/182 (31%), Positives = 88/182 (48%), Gaps = 3/182 (1%)
Frame = +1
Query: 340 RCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISW 519
+C L GH AV V + G+ + SG+ D V+ WD TET T QGH + V S+ +
Sbjct: 374 QCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF 431
Query: 520 SPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSK 699
DG + SG + I +WD TG + L GH + + + + S +
Sbjct: 432 --DGIHVVSGSLDTSIRVWDVETGNCI-HTLTGHQSLTSGMELKD-------NILVSGNA 481
Query: 700 DGSVRVWDTTAGRCERILTG---HTQSVTCLRWGGDGLLYSASQDRTIKVWRAHDGVLCR 870
D +V++WD G+C + L G H +VTCL++ + ++S D T+K+W G R
Sbjct: 482 DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF-NKNFVITSSDDGTVKLWDLKTGEFIR 540
Query: 871 TL 876
L
Sbjct: 541 NL 542
Score = 73.2 bits (178), Expect = 3e-13
Identities = 52/176 (29%), Positives = 83/176 (47%), Gaps = 2/176 (1%)
Frame = +1
Query: 355 LEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGK 534
L+GH + VI+ G + SGS D T++ W T T GH V WS +
Sbjct: 258 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQMR 312
Query: 535 K--LASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVASSSKDGS 708
+ SG + + +W+ TG+ + L GH+ + + LH + V S S+D +
Sbjct: 313 DNIIISGSTDRTLKVWNAETGECI-HTLYGHTSTVRCMH---LHE----KRVVSGSRDAT 364
Query: 709 VRVWDTTAGRCERILTGHTQSVTCLRWGGDGLLYSASQDRTIKVWRAHDGVLCRTL 876
+RVWD G+C +L GH +V C+++ G ++ S + D +KVW TL
Sbjct: 365 LRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVV-SGAYDFMVKVWDPETETCLHTL 419
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,596,171
Number of extensions: 1216423
Number of successful extensions: 7816
Number of sequences better than 1.0e-05: 192
Number of HSP's gapped: 6457
Number of HSP's successfully gapped: 460
Length of query: 292
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 190
Effective length of database: 14,934,836
Effective search space: 2837618840
Effective search space used: 2837618840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014089
(876 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 422 e-115
>Sscrofa_Chr12
|| Length = 63588571
Score = 422 bits (213), Expect = e-115
Identities = 222/225 (98%)
Strand = Plus / Plus
Query: 186 ccaggaggatcccttgccactggctttctatgtccatgatgccgagatcgtctcctccct 245
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 41548440 ccaggaggatcccttgccactggctttctatgtccatgatgccgagatcatctcctccct 41548499
Query: 246 ggggaagacgctggagtcacaggcagtggagacagagaaggttctcgacatcatctacca 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41548500 ggggaagacgctggagtcacaggcagtggagacagagaaggttctcgacatcatctacca 41548559
Query: 306 gccacaggctgtcttcaaggtccgagctgtgacccgctgcaccagctccttggagggtca 365
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 41548560 gccacaggctgtcttcagggtccgcgctgtgacccgctgcaccagctccttggagggtca 41548619
Query: 366 cagtgaggcggtcatttccgtggccttcagccccacaggaaagta 410
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41548620 cagtgaggcggtcatttccgtggccttcagccccacaggaaagta 41548664
Score = 361 bits (182), Expect = 4e-97
Identities = 191/194 (98%)
Strand = Plus / Plus
Query: 663 gaaccccgagtgccgctacgtggccagcagctccaaggacggcagcgtgcgggtctggga 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41551279 gaaccccgagtgccgctacgtggccagcagctccaaggacggcagcgtgcgggtctggga 41551338
Query: 723 cacaaccgctggccgctgtgagcgcatcctcacgggacacacgcagtcggtcacctgtct 782
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 41551339 cacaaccgctggccgctgtgagcgcatcctcacggggcacacgcagtcagtcacctgtct 41551398
Query: 783 ccggtggggaggggacgggctcctctactctgcctcccaggaccgcaccatcaaagtctg 842
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 41551399 ccggtggggaggggacgggctcctctactccgcctcccaggaccgcaccatcaaagtctg 41551458
Query: 843 gagggctcatgacg 856
||||||||||||||
Sbjct: 41551459 gagggctcatgacg 41551472
Score = 289 bits (146), Expect = 1e-75
Identities = 146/146 (100%)
Strand = Plus / Plus
Query: 45 ggatgaggcggcgccgcgcgacgtgcagcggctgctcgtgcagttccaggatgaaggcgg 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41546872 ggatgaggcggcgccgcgcgacgtgcagcggctgctcgtgcagttccaggatgaaggcgg 41546931
Query: 105 gcagttactgggctccccgttcgacgtgccggtggacatcaccccggacaagctgcagct 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41546932 gcagttactgggctccccgttcgacgtgccggtggacatcaccccggacaagctgcagct 41546991
Query: 165 cgtgtgcaacgcgttgctggcccagg 190
||||||||||||||||||||||||||
Sbjct: 41546992 cgtgtgcaacgcgttgctggcccagg 41547017
Score = 202 bits (102), Expect = 2e-49
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 562 cagattctcctgtgggacccaagcacagggaagcaagtgggcagggcccttgcaggccac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41550605 cagattctcctgtgggacccaagcacagggaagcaagtgggcagggcccttgcaggccac 41550664
Query: 622 agcaagtggatcacagccctgagctgggagcccctccatgcg 663
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41550665 agcaagtggatcacagccctgagctgggagcccctccatgcg 41550706
Score = 155 bits (78), Expect = 5e-35
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 487 ggacatagacactgggtccttagcatatcctggtccccagatggcaagaagctggcttcc 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41550363 ggacatagacactgggtccttagcatatcctggtccccagatggcaagaagctggcttcc 41550422
Query: 547 ggctgcaagaatggccag 564
||||||||||||||||||
Sbjct: 41550423 ggctgcaagaatggccag 41550440
Score = 153 bits (77), Expect = 2e-34
Identities = 80/81 (98%)
Strand = Plus / Plus
Query: 408 gtacctggccagtggctccggagacactaccgtgcgcttctgggatctcagcactgagac 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41549241 gtacctggccagtggctccggagacactaccgtgcgcttctgggatctcagcactgagac 41549300
Query: 468 accacatttcacgtgccaggg 488
||||||||||||||||||||
Sbjct: 41549301 tccacatttcacgtgccaggg 41549321
Score = 91.7 bits (46), Expect = 6e-16
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 1 gttttcccctccacgtggggacgcgggatggcggcggccgtggcgg 46
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41546677 gttttcccctccacgtggggacgcgggatggcggcggccgtggcgg 41546722
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 21,973,129
Number of extensions: 121
Number of successful extensions: 121
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 7
Length of query: 876
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 855
Effective length of database: 2,808,413,156
Effective search space: 2401193248380
Effective search space used: 2401193248380
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)