Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014098
(959 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001193864.1| MMP37-like protein, mitochondrial [Canis lup... 433 e-121
>ref|NP_001193864.1| MMP37-like protein, mitochondrial [Canis lupus familiaris].
Length = 337
Score = 433 bits (1114), Expect = e-121
Identities = 210/236 (88%), Positives = 225/236 (95%)
Frame = +3
Query: 252 MALQALQSSGVTFRKILSHFPEELSLAFAYGSGVYRQAGPSSDQKKAMLDFVFTVDDPVE 431
MALQALQSSGV FR+ILSHFPEELSLAFAYGSGVYRQ GPS+DQK AMLDFVFTVDDPV
Sbjct: 1 MALQALQSSGVAFRRILSHFPEELSLAFAYGSGVYRQVGPSADQKNAMLDFVFTVDDPVA 60
Query: 432 WHSKNLKKNWNHYSFLKIFGPRIISTVQNNYGAGVYYNPLIMCDGRLIKYGVISTSTLIE 611
WHSKNLKKNWNHYSFLK+ GP+II+TVQN+YGAGVYYNP IMCDGRLIKYGVIST+ LI+
Sbjct: 61 WHSKNLKKNWNHYSFLKVLGPKIITTVQNDYGAGVYYNPFIMCDGRLIKYGVISTNILID 120
Query: 612 DLLNWNNLYIAGRLQKPVKIVAMNENVALRSALDKNLKSAVTAAFLMLPESFSEEDLFLE 791
DLLNWNNLYIAGRLQKPVKI+AMNEN+ALRSALDKNL+SAVT AFLMLPESFSEEDLF+E
Sbjct: 121 DLLNWNNLYIAGRLQKPVKIIAMNENIALRSALDKNLRSAVTTAFLMLPESFSEEDLFIE 180
Query: 792 IAGLSYSGDFRMVVGEDRMKVLNIVKPNIAHFRELYGSILQENPQVVYKIQQGSLE 959
IAGLSYSGDFRMV GED+ KVLNIVKPNIAHFRELYG+ILQ+NPQVVYKIQQG LE
Sbjct: 181 IAGLSYSGDFRMVFGEDKTKVLNIVKPNIAHFRELYGNILQDNPQVVYKIQQGRLE 236
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,494,885
Number of extensions: 1273567
Number of successful extensions: 7046
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6949
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 216
Effective length of database: 15,440,896
Effective search space: 3335233536
Effective search space used: 3335233536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-014098
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014098
(959 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001073242.1| MMP37-like protein, mitochondrial precursor ... 430 e-120
>ref|NP_001073242.1| MMP37-like protein, mitochondrial precursor [Bos taurus].
Length = 335
Score = 430 bits (1105), Expect = e-120
Identities = 216/236 (91%), Positives = 224/236 (94%)
Frame = +3
Query: 252 MALQALQSSGVTFRKILSHFPEELSLAFAYGSGVYRQAGPSSDQKKAMLDFVFTVDDPVE 431
MALQALQSSGV FRKILSHFPEELSLAFAYGSGVYRQAGPSSDQK AMLDFVFTVDDP
Sbjct: 1 MALQALQSSGVAFRKILSHFPEELSLAFAYGSGVYRQAGPSSDQKNAMLDFVFTVDDP-- 58
Query: 432 WHSKNLKKNWNHYSFLKIFGPRIISTVQNNYGAGVYYNPLIMCDGRLIKYGVISTSTLIE 611
WHSKNLK+NWNHYSFLK+ GPRII+ VQNNYGAGVYYN LI CDGRLIKYGVISTS LIE
Sbjct: 59 WHSKNLKRNWNHYSFLKVLGPRIITAVQNNYGAGVYYNTLITCDGRLIKYGVISTSVLIE 118
Query: 612 DLLNWNNLYIAGRLQKPVKIVAMNENVALRSALDKNLKSAVTAAFLMLPESFSEEDLFLE 791
DLLNWNNLYIAGRLQKPVKIVAMNE+VALRSALD+NLKSAVTAAFLMLPESFSEEDLF E
Sbjct: 119 DLLNWNNLYIAGRLQKPVKIVAMNEDVALRSALDQNLKSAVTAAFLMLPESFSEEDLFTE 178
Query: 792 IAGLSYSGDFRMVVGEDRMKVLNIVKPNIAHFRELYGSILQENPQVVYKIQQGSLE 959
IAGLSYSGDFRMVVGED+ KVLNIVKPN+AHFRELYGSILQE+PQVVYK QQGSLE
Sbjct: 179 IAGLSYSGDFRMVVGEDKAKVLNIVKPNMAHFRELYGSILQESPQVVYKAQQGSLE 234
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,690,394
Number of extensions: 1229668
Number of successful extensions: 6850
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6736
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 217
Effective length of database: 14,306,398
Effective search space: 3104488366
Effective search space used: 3104488366
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014098
(959 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003132419.1| PREDICTED: MMP37-like protein, mitochondrial... 470 e-133
Alignment gi|XP_003132418.1| PREDICTED: MMP37-like protein, mitochondrial... 470 e-133
>ref|XP_003132419.1| PREDICTED: MMP37-like protein, mitochondrial-like isoform 2 [Sus
scrofa].
Length = 332
Score = 470 bits (1210), Expect = e-133
Identities = 236/236 (100%), Positives = 236/236 (100%)
Frame = +3
Query: 252 MALQALQSSGVTFRKILSHFPEELSLAFAYGSGVYRQAGPSSDQKKAMLDFVFTVDDPVE 431
MALQALQSSGVTFRKILSHFPEELSLAFAYGSGVYRQAGPSSDQKKAMLDFVFTVDDPVE
Sbjct: 1 MALQALQSSGVTFRKILSHFPEELSLAFAYGSGVYRQAGPSSDQKKAMLDFVFTVDDPVE 60
Query: 432 WHSKNLKKNWNHYSFLKIFGPRIISTVQNNYGAGVYYNPLIMCDGRLIKYGVISTSTLIE 611
WHSKNLKKNWNHYSFLKIFGPRIISTVQNNYGAGVYYNPLIMCDGRLIKYGVISTSTLIE
Sbjct: 61 WHSKNLKKNWNHYSFLKIFGPRIISTVQNNYGAGVYYNPLIMCDGRLIKYGVISTSTLIE 120
Query: 612 DLLNWNNLYIAGRLQKPVKIVAMNENVALRSALDKNLKSAVTAAFLMLPESFSEEDLFLE 791
DLLNWNNLYIAGRLQKPVKIVAMNENVALRSALDKNLKSAVTAAFLMLPESFSEEDLFLE
Sbjct: 121 DLLNWNNLYIAGRLQKPVKIVAMNENVALRSALDKNLKSAVTAAFLMLPESFSEEDLFLE 180
Query: 792 IAGLSYSGDFRMVVGEDRMKVLNIVKPNIAHFRELYGSILQENPQVVYKIQQGSLE 959
IAGLSYSGDFRMVVGEDRMKVLNIVKPNIAHFRELYGSILQENPQVVYKIQQGSLE
Sbjct: 181 IAGLSYSGDFRMVVGEDRMKVLNIVKPNIAHFRELYGSILQENPQVVYKIQQGSLE 236
>ref|XP_003132418.1| PREDICTED: MMP37-like protein, mitochondrial-like isoform 1 [Sus
scrofa].
Length = 337
Score = 470 bits (1210), Expect = e-133
Identities = 236/236 (100%), Positives = 236/236 (100%)
Frame = +3
Query: 252 MALQALQSSGVTFRKILSHFPEELSLAFAYGSGVYRQAGPSSDQKKAMLDFVFTVDDPVE 431
MALQALQSSGVTFRKILSHFPEELSLAFAYGSGVYRQAGPSSDQKKAMLDFVFTVDDPVE
Sbjct: 1 MALQALQSSGVTFRKILSHFPEELSLAFAYGSGVYRQAGPSSDQKKAMLDFVFTVDDPVE 60
Query: 432 WHSKNLKKNWNHYSFLKIFGPRIISTVQNNYGAGVYYNPLIMCDGRLIKYGVISTSTLIE 611
WHSKNLKKNWNHYSFLKIFGPRIISTVQNNYGAGVYYNPLIMCDGRLIKYGVISTSTLIE
Sbjct: 61 WHSKNLKKNWNHYSFLKIFGPRIISTVQNNYGAGVYYNPLIMCDGRLIKYGVISTSTLIE 120
Query: 612 DLLNWNNLYIAGRLQKPVKIVAMNENVALRSALDKNLKSAVTAAFLMLPESFSEEDLFLE 791
DLLNWNNLYIAGRLQKPVKIVAMNENVALRSALDKNLKSAVTAAFLMLPESFSEEDLFLE
Sbjct: 121 DLLNWNNLYIAGRLQKPVKIVAMNENVALRSALDKNLKSAVTAAFLMLPESFSEEDLFLE 180
Query: 792 IAGLSYSGDFRMVVGEDRMKVLNIVKPNIAHFRELYGSILQENPQVVYKIQQGSLE 959
IAGLSYSGDFRMVVGEDRMKVLNIVKPNIAHFRELYGSILQENPQVVYKIQQGSLE
Sbjct: 181 IAGLSYSGDFRMVVGEDRMKVLNIVKPNIAHFRELYGSILQENPQVVYKIQQGSLE 236
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,648,164
Number of extensions: 796305
Number of successful extensions: 4505
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4407
Number of HSP's successfully gapped: 2
Length of query: 319
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 220
Effective length of database: 8,879,129
Effective search space: 1953408380
Effective search space used: 1953408380
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014098
(959 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_081170.1| MMP37-like protein, mitochondrial precursor [Mu... 398 e-111
>ref|NP_081170.1| MMP37-like protein, mitochondrial precursor [Mus musculus].
Length = 337
Score = 398 bits (1023), Expect = e-111
Identities = 192/236 (81%), Positives = 216/236 (91%)
Frame = +3
Query: 252 MALQALQSSGVTFRKILSHFPEELSLAFAYGSGVYRQAGPSSDQKKAMLDFVFTVDDPVE 431
MALQAL SSGV R+IL+HFPE+LSLAFAYGS VYRQAGPS+ Q+ MLD VFTVDDPV
Sbjct: 1 MALQALHSSGVGLRRILAHFPEDLSLAFAYGSAVYRQAGPSAHQENPMLDLVFTVDDPVA 60
Query: 432 WHSKNLKKNWNHYSFLKIFGPRIISTVQNNYGAGVYYNPLIMCDGRLIKYGVISTSTLIE 611
WH+ NLKKNW+HYSFLK+ GPRIIS++QNNYGAGVY+NPLI CDG+LIKYGVIST TLIE
Sbjct: 61 WHAMNLKKNWSHYSFLKLLGPRIISSIQNNYGAGVYFNPLIRCDGKLIKYGVISTGTLIE 120
Query: 612 DLLNWNNLYIAGRLQKPVKIVAMNENVALRSALDKNLKSAVTAAFLMLPESFSEEDLFLE 791
DLLNWNNLYIAGRLQKPVKIV+MNEN+ALR+ALDKNL+SAVT A LMLPESFSEEDLF+E
Sbjct: 121 DLLNWNNLYIAGRLQKPVKIVSMNENMALRAALDKNLRSAVTTACLMLPESFSEEDLFIE 180
Query: 792 IAGLSYSGDFRMVVGEDRMKVLNIVKPNIAHFRELYGSILQENPQVVYKIQQGSLE 959
IAGLSYSGDFRMV+GE++ KVLNIVKPN+ HFRELY SILQ++PQVVYK+ QG LE
Sbjct: 181 IAGLSYSGDFRMVIGEEKSKVLNIVKPNVGHFRELYESILQKDPQVVYKMHQGQLE 236
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,139,415
Number of extensions: 1022004
Number of successful extensions: 5133
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5037
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 218
Effective length of database: 12,583,923
Effective search space: 2743295214
Effective search space used: 2743295214
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014098
(959 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_620162.1| MMP37-like protein, mitochondrial precursor [Ho... 426 e-119
>ref|NP_620162.1| MMP37-like protein, mitochondrial precursor [Homo sapiens].
Length = 316
Score = 426 bits (1095), Expect = e-119
Identities = 209/236 (88%), Positives = 224/236 (94%)
Frame = +3
Query: 252 MALQALQSSGVTFRKILSHFPEELSLAFAYGSGVYRQAGPSSDQKKAMLDFVFTVDDPVE 431
MALQ LQSS VTFRKILSHFPEELSLAF YGSGVYRQAGPSSDQK AMLDFVFTVDDPV
Sbjct: 1 MALQTLQSSWVTFRKILSHFPEELSLAFVYGSGVYRQAGPSSDQKNAMLDFVFTVDDPVA 60
Query: 432 WHSKNLKKNWNHYSFLKIFGPRIISTVQNNYGAGVYYNPLIMCDGRLIKYGVISTSTLIE 611
WHSKNLKKNW+HYSFLK+ GP+II+++QNNYGAGVYYN LIMC+GRLIKYGVIST+ LIE
Sbjct: 61 WHSKNLKKNWSHYSFLKVLGPKIITSIQNNYGAGVYYNSLIMCNGRLIKYGVISTNVLIE 120
Query: 612 DLLNWNNLYIAGRLQKPVKIVAMNENVALRSALDKNLKSAVTAAFLMLPESFSEEDLFLE 791
DLLNWNNLYIAGRLQKPVKI+++NE+V LRSALD+NLKSAVTAAFLMLPESFSEEDLF+E
Sbjct: 121 DLLNWNNLYIAGRLQKPVKIISVNEDVTLRSALDRNLKSAVTAAFLMLPESFSEEDLFIE 180
Query: 792 IAGLSYSGDFRMVVGEDRMKVLNIVKPNIAHFRELYGSILQENPQVVYKIQQGSLE 959
IAGLSYSGDFRMVVGED+ KVLNIVKPNIAHFRELYGSILQENPQVVYK QQG LE
Sbjct: 181 IAGLSYSGDFRMVVGEDKTKVLNIVKPNIAHFRELYGSILQENPQVVYKSQQGWLE 236
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,605,477
Number of extensions: 1240575
Number of successful extensions: 6715
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6594
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 216
Effective length of database: 14,901,872
Effective search space: 3218804352
Effective search space used: 3218804352
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014098
(959 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 765 0.0
Sscrofa_Chr15 244 7e-62
>Sscrofa_Chr13
|| Length = 218635234
Score = 765 bits (386), Expect = 0.0
Identities = 386/386 (100%)
Strand = Plus / Minus
Query: 1 cacgtggccgctggaccggctgggccagcgcccacctggttctctagtaggtgctttcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75197020 cacgtggccgctggaccggctgggccagcgcccacctggttctctagtaggtgctttcca 75196961
Query: 61 gcctgctccgggactggagtacccccgcgagtccctgccggccacgccacttcctgcccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75196960 gcctgctccgggactggagtacccccgcgagtccctgccggccacgccacttcctgcccc 75196901
Query: 121 cggcctcagccttctcctgttctgaccagtcctcgacttccatctcccacccttagcggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75196900 cggcctcagccttctcctgttctgaccagtcctcgacttccatctcccacccttagcggg 75196841
Query: 181 tatcagttcctcgccctgctgtccttcgctcccctccccgccaagggtccctgtcgctga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75196840 tatcagttcctcgccctgctgtccttcgctcccctccccgccaagggtccctgtcgctga 75196781
Query: 241 gccccggccccatggcgctgcaggcgttgcaaagctccggggtgaccttccgcaagatcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75196780 gccccggccccatggcgctgcaggcgttgcaaagctccggggtgaccttccgcaagatcc 75196721
Query: 301 tgtctcacttccccgaagagctgagcctggctttcgcctacggttctggagtgtaccgcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75196720 tgtctcacttccccgaagagctgagcctggctttcgcctacggttctggagtgtaccgcc 75196661
Query: 361 aggcggggcccagctcagaccagaag 386
||||||||||||||||||||||||||
Sbjct: 75196660 aggcggggcccagctcagaccagaag 75196635
Score = 367 bits (185), Expect = 7e-99
Identities = 185/185 (100%)
Strand = Plus / Minus
Query: 385 agaaggccatgctggactttgtgttcacagtcgatgaccctgtagaatggcattccaaga 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75193882 agaaggccatgctggactttgtgttcacagtcgatgaccctgtagaatggcattccaaga 75193823
Query: 445 acctgaagaaaaactggaaccattactctttcctaaaaatttttgggcccaggattatca 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75193822 acctgaagaaaaactggaaccattactctttcctaaaaatttttgggcccaggattatca 75193763
Query: 505 gcactgtccagaataactacggcgccggagtttactataatccgttgatcatgtgtgatg 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75193762 gcactgtccagaataactacggcgccggagtttactataatccgttgatcatgtgtgatg 75193703
Query: 565 gtagg 569
|||||
Sbjct: 75193702 gtagg 75193698
Score = 305 bits (154), Expect = 2e-80
Identities = 154/154 (100%)
Strand = Plus / Minus
Query: 662 ggtgaaaatcgtagcaatgaatgagaatgtggctcttaggtcagcccttgataaaaatct 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75182691 ggtgaaaatcgtagcaatgaatgagaatgtggctcttaggtcagcccttgataaaaatct 75182632
Query: 722 gaaaagtgctgtgactgctgctttcctcatgctccccgaaagcttttctgaagaagacct 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75182631 gaaaagtgctgtgactgctgctttcctcatgctccccgaaagcttttctgaagaagacct 75182572
Query: 782 gtttttggagattgctggtctctcctactcaggt 815
||||||||||||||||||||||||||||||||||
Sbjct: 75182571 gtttttggagattgctggtctctcctactcaggt 75182538
Score = 293 bits (148), Expect = 9e-77
Identities = 148/148 (100%)
Strand = Plus / Minus
Query: 811 caggtgactttcgcatggtggttggagaggataggatgaaagtgttgaatattgtgaagc 870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75164954 caggtgactttcgcatggtggttggagaggataggatgaaagtgttgaatattgtgaagc 75164895
Query: 871 ccaacatagcccactttcgtgaactctatggcagcattctacaggagaacccccaagtgg 930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75164894 ccaacatagcccactttcgtgaactctatggcagcattctacaggagaacccccaagtgg 75164835
Query: 931 tgtataaaatccagcaaggcagcctgga 958
||||||||||||||||||||||||||||
Sbjct: 75164834 tgtataaaatccagcaaggcagcctgga 75164807
Score = 192 bits (97), Expect = 2e-46
Identities = 97/97 (100%)
Strand = Plus / Minus
Query: 569 gcttatcaagtatggggttattagcactagtactttgattgaagacctcctcaactggaa 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75190914 gcttatcaagtatggggttattagcactagtactttgattgaagacctcctcaactggaa 75190855
Query: 629 taacttatacattgctggaagactccagaaaccggtg 665
|||||||||||||||||||||||||||||||||||||
Sbjct: 75190854 taacttatacattgctggaagactccagaaaccggtg 75190818
>Sscrofa_Chr15
|| Length = 157681621
Score = 244 bits (123), Expect = 7e-62
Identities = 141/147 (95%)
Strand = Plus / Minus
Query: 812 aggtgactttcgcatggtggttggagaggataggatgaaagtgttgaatattgtgaagcc 871
||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 64019571 aggtgactttcagatggtggttggagaggataggatgaaagtgttgaatactgtgaagcc 64019512
Query: 872 caacatagcccactttcgtgaactctatggcagcattctacaggagaacccccaagtggt 931
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64019511 caacacaatccactttcgtgaactctatggcagcattctacaggagaacccccaagtggt 64019452
Query: 932 gtataaaatccagcaaggcagcctgga 958
|||||||||||||||||||||||||||
Sbjct: 64019451 gtataaaatccagcaaggcagcctgga 64019425
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,369,368
Number of extensions: 121
Number of successful extensions: 121
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 6
Length of query: 959
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 938
Effective length of database: 2,808,413,156
Effective search space: 2634291540328
Effective search space used: 2634291540328
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)