Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014100
(947 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001179923.1| splicing factor 3B subunit 1 [Bos taurus]. 510 e-145
Alignment gi|XP_002685522.1| PREDICTED: splicing factor 3b, subunit 1, 15... 510 e-145
>ref|NP_001179923.1| splicing factor 3B subunit 1 [Bos taurus].
Length = 1304
Score = 510 bits (1313), Expect = e-145
Identities = 259/297 (87%), Positives = 262/297 (88%), Gaps = 2/297 (0%)
Frame = +2
Query: 62 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA 241
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
Sbjct: 1 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA 60
Query: 242 TELEXXXXXXXXXXXLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK 421
TELE LLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
Sbjct: 61 TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK 120
Query: 422 KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE 601
KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE
Sbjct: 121 KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE 180
Query: 602 LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSPRWDETPGRAK 781
LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPS RWDETPGRAK
Sbjct: 181 LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAK 240
Query: 782 GSETPGAPPAQNMGSYT*SHTCGSCYSWTKRYTRPMHTS--HGGATSSARKNRWDET 946
GSETPGA P + T SHT + R P H + HGGATSSARKNRWDET
Sbjct: 241 GSETPGATPGSKIWDPTPSHTPAGA-ATPGRGDTPGHATPGHGGATSSARKNRWDET 296
>ref|XP_002685522.1| PREDICTED: splicing factor 3b, subunit 1, 155kDa [Bos taurus].
Length = 1304
Score = 510 bits (1313), Expect = e-145
Identities = 259/297 (87%), Positives = 262/297 (88%), Gaps = 2/297 (0%)
Frame = +2
Query: 62 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA 241
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
Sbjct: 1 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA 60
Query: 242 TELEXXXXXXXXXXXLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK 421
TELE LLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
Sbjct: 61 TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK 120
Query: 422 KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE 601
KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE
Sbjct: 121 KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE 180
Query: 602 LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSPRWDETPGRAK 781
LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPS RWDETPGRAK
Sbjct: 181 LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAK 240
Query: 782 GSETPGAPPAQNMGSYT*SHTCGSCYSWTKRYTRPMHTS--HGGATSSARKNRWDET 946
GSETPGA P + T SHT + R P H + HGGATSSARKNRWDET
Sbjct: 241 GSETPGATPGSKIWDPTPSHTPAGA-ATPGRGDTPGHATPGHGGATSSARKNRWDET 296
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,155,724
Number of extensions: 955392
Number of successful extensions: 4531
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4476
Number of HSP's successfully gapped: 2
Length of query: 315
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 213
Effective length of database: 14,306,398
Effective search space: 3047262774
Effective search space used: 3047262774
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-014100
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014100
(947 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_857064.1| PREDICTED: similar to splicing factor 3b, subun... 510 e-145
Alignment gi|XP_857022.1| PREDICTED: similar to splicing factor 3b, subun... 510 e-145
Alignment gi|XP_856819.1| PREDICTED: similar to splicing factor 3b, subun... 510 e-145
Alignment gi|XP_545578.2| PREDICTED: similar to splicing factor 3b, subun... 510 e-145
Alignment gi|XP_857149.1| PREDICTED: similar to splicing factor 3b, subun... 503 e-142
Alignment gi|XP_857106.1| PREDICTED: similar to splicing factor 3b, subun... 491 e-139
Alignment gi|XP_856734.1| PREDICTED: similar to splicing factor 3b, subun... 258 4e-69
Alignment gi|XP_856779.1| PREDICTED: similar to splicing factor 3b, subun... 256 2e-68
Alignment gi|XP_856616.1| PREDICTED: similar to splicing factor 3b, subun... 256 2e-68
Alignment gi|XP_856982.1| PREDICTED: similar to splicing factor 3b, subun... 224 1e-58
>ref|XP_857064.1| PREDICTED: similar to splicing factor 3b, subunit 1 isoform 1
isoform 14 [Canis familiaris].
Length = 1252
Score = 510 bits (1313), Expect = e-145
Identities = 259/297 (87%), Positives = 262/297 (88%), Gaps = 2/297 (0%)
Frame = +2
Query: 62 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA 241
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
Sbjct: 1 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA 60
Query: 242 TELEXXXXXXXXXXXLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK 421
TELE LLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
Sbjct: 61 TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK 120
Query: 422 KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE 601
KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE
Sbjct: 121 KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE 180
Query: 602 LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSPRWDETPGRAK 781
LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPS RWDETPGRAK
Sbjct: 181 LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAK 240
Query: 782 GSETPGAPPAQNMGSYT*SHTCGSCYSWTKRYTRPMHTS--HGGATSSARKNRWDET 946
GSETPGA P + T SHT + R P H + HGGATSSARKNRWDET
Sbjct: 241 GSETPGATPGSKIWDPTPSHTPAGA-ATPGRGDTPGHATPGHGGATSSARKNRWDET 296
>ref|XP_857022.1| PREDICTED: similar to splicing factor 3b, subunit 1 isoform 1
isoform 13 [Canis familiaris].
Length = 1311
Score = 510 bits (1313), Expect = e-145
Identities = 259/297 (87%), Positives = 262/297 (88%), Gaps = 2/297 (0%)
Frame = +2
Query: 62 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA 241
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
Sbjct: 1 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA 60
Query: 242 TELEXXXXXXXXXXXLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK 421
TELE LLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
Sbjct: 61 TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK 120
Query: 422 KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE 601
KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE
Sbjct: 121 KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE 180
Query: 602 LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSPRWDETPGRAK 781
LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPS RWDETPGRAK
Sbjct: 181 LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAK 240
Query: 782 GSETPGAPPAQNMGSYT*SHTCGSCYSWTKRYTRPMHTS--HGGATSSARKNRWDET 946
GSETPGA P + T SHT + R P H + HGGATSSARKNRWDET
Sbjct: 241 GSETPGATPGSKIWDPTPSHTPAGA-ATPGRGDTPGHATPGHGGATSSARKNRWDET 296
>ref|XP_856819.1| PREDICTED: similar to splicing factor 3b, subunit 1 isoform 8
[Canis familiaris].
Length = 425
Score = 510 bits (1313), Expect = e-145
Identities = 259/297 (87%), Positives = 262/297 (88%), Gaps = 2/297 (0%)
Frame = +2
Query: 62 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA 241
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
Sbjct: 1 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA 60
Query: 242 TELEXXXXXXXXXXXLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK 421
TELE LLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
Sbjct: 61 TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK 120
Query: 422 KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE 601
KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE
Sbjct: 121 KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE 180
Query: 602 LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSPRWDETPGRAK 781
LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPS RWDETPGRAK
Sbjct: 181 LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAK 240
Query: 782 GSETPGAPPAQNMGSYT*SHTCGSCYSWTKRYTRPMHTS--HGGATSSARKNRWDET 946
GSETPGA P + T SHT + R P H + HGGATSSARKNRWDET
Sbjct: 241 GSETPGATPGSKIWDPTPSHTPAGA-ATPGRGDTPGHATPGHGGATSSARKNRWDET 296
>ref|XP_545578.2| PREDICTED: similar to splicing factor 3b, subunit 1 isoform 1
isoform 1 [Canis familiaris].
Length = 1304
Score = 510 bits (1313), Expect = e-145
Identities = 259/297 (87%), Positives = 262/297 (88%), Gaps = 2/297 (0%)
Frame = +2
Query: 62 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA 241
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
Sbjct: 1 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA 60
Query: 242 TELEXXXXXXXXXXXLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK 421
TELE LLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
Sbjct: 61 TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK 120
Query: 422 KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE 601
KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE
Sbjct: 121 KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE 180
Query: 602 LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSPRWDETPGRAK 781
LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPS RWDETPGRAK
Sbjct: 181 LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAK 240
Query: 782 GSETPGAPPAQNMGSYT*SHTCGSCYSWTKRYTRPMHTS--HGGATSSARKNRWDET 946
GSETPGA P + T SHT + R P H + HGGATSSARKNRWDET
Sbjct: 241 GSETPGATPGSKIWDPTPSHTPAGA-ATPGRGDTPGHATPGHGGATSSARKNRWDET 296
>ref|XP_857149.1| PREDICTED: similar to splicing factor 3b, subunit 1 isoform 1
isoform 16 [Canis familiaris].
Length = 1312
Score = 503 bits (1294), Expect = e-142
Identities = 259/305 (84%), Positives = 262/305 (85%), Gaps = 10/305 (3%)
Frame = +2
Query: 62 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA 241
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
Sbjct: 1 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA 60
Query: 242 TELEXXXXXXXXXXXLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK 421
TELE LLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
Sbjct: 61 TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK 120
Query: 422 KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE 601
KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE
Sbjct: 121 KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE 180
Query: 602 LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQA--------ETPGHTPSPRW 757
LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQA ETPGHTPS RW
Sbjct: 181 LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAEAETQAEGETPGHTPSLRW 240
Query: 758 DETPGRAKGSETPGAPPAQNMGSYT*SHTCGSCYSWTKRYTRPMHTS--HGGATSSARKN 931
DETPGRAKGSETPGA P + T SHT + R P H + HGGATSSARKN
Sbjct: 241 DETPGRAKGSETPGATPGSKIWDPTPSHTPAGA-ATPGRGDTPGHATPGHGGATSSARKN 299
Query: 932 RWDET 946
RWDET
Sbjct: 300 RWDET 304
>ref|XP_857106.1| PREDICTED: similar to splicing factor 3b, subunit 1 isoform 1
isoform 15 [Canis familiaris].
Length = 1305
Score = 491 bits (1264), Expect = e-139
Identities = 254/299 (84%), Positives = 258/299 (86%), Gaps = 4/299 (1%)
Frame = +2
Query: 62 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA 241
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
Sbjct: 1 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA 60
Query: 242 TELEXXXXXXXXXXXLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK 421
TELE LLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
Sbjct: 61 TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK 120
Query: 422 KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE 601
KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE
Sbjct: 121 KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE 180
Query: 602 LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLS--SWDQAETPGHTPSPRWDETPGR 775
LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLS W+ TPGHTPS RWDETPGR
Sbjct: 181 LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSIFFWEDT-TPGHTPSLRWDETPGR 239
Query: 776 AKGSETPGAPPAQNMGSYT*SHTCGSCYSWTKRYTRPMHTS--HGGATSSARKNRWDET 946
AKGSETPGA P + T SHT + R P H + HGGATSSARKNRWDET
Sbjct: 240 AKGSETPGATPGSKIWDPTPSHTPAGA-ATPGRGDTPGHATPGHGGATSSARKNRWDET 297
>ref|XP_856734.1| PREDICTED: similar to splicing factor 3b, subunit 1 isoform 6
[Canis familiaris].
Length = 154
Score = 258 bits (660), Expect = 4e-69
Identities = 129/143 (90%), Positives = 129/143 (90%)
Frame = +2
Query: 62 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA 241
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
Sbjct: 1 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA 60
Query: 242 TELEXXXXXXXXXXXLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK 421
TELE LLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
Sbjct: 61 TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK 120
Query: 422 KHRRTMIISPERLDPFADGGKTP 490
KHRRTMIISPERLDPFADG P
Sbjct: 121 KHRRTMIISPERLDPFADGNSFP 143
>ref|XP_856779.1| PREDICTED: similar to splicing factor 3b, subunit 1 isoform 2
isoform 7 [Canis familiaris].
Length = 144
Score = 256 bits (655), Expect = 2e-68
Identities = 128/139 (92%), Positives = 128/139 (92%)
Frame = +2
Query: 62 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA 241
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
Sbjct: 1 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA 60
Query: 242 TELEXXXXXXXXXXXLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK 421
TELE LLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
Sbjct: 61 TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK 120
Query: 422 KHRRTMIISPERLDPFADG 478
KHRRTMIISPERLDPFADG
Sbjct: 121 KHRRTMIISPERLDPFADG 139
>ref|XP_856616.1| PREDICTED: similar to splicing factor 3b, subunit 1 isoform 2
isoform 3 [Canis familiaris].
Length = 144
Score = 256 bits (655), Expect = 2e-68
Identities = 128/139 (92%), Positives = 128/139 (92%)
Frame = +2
Query: 62 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA 241
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
Sbjct: 1 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA 60
Query: 242 TELEXXXXXXXXXXXLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK 421
TELE LLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
Sbjct: 61 TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK 120
Query: 422 KHRRTMIISPERLDPFADG 478
KHRRTMIISPERLDPFADG
Sbjct: 121 KHRRTMIISPERLDPFADG 139
>ref|XP_856982.1| PREDICTED: similar to splicing factor 3b, subunit 1 isoform 1
isoform 12 [Canis familiaris].
Length = 1149
Score = 224 bits (570), Expect = 1e-58
Identities = 115/142 (80%), Positives = 118/142 (83%), Gaps = 2/142 (1%)
Frame = +2
Query: 527 MREQHLTKEEREIRQQLAEKAKAGELKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKL 706
MREQHLTKEEREIRQQLAEKAKAGELKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKL
Sbjct: 1 MREQHLTKEEREIRQQLAEKAKAGELKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKL 60
Query: 707 SSWDQAETPGHTPSPRWDETPGRAKGSETPGAPPAQNMGSYT*SHTCGSCYSWTKRYTRP 886
SSWDQAETPGHTPS RWDETPGRAKGSETPGA P + T SHT + R P
Sbjct: 61 SSWDQAETPGHTPSLRWDETPGRAKGSETPGATPGSKIWDPTPSHTPAGA-ATPGRGDTP 119
Query: 887 MHTS--HGGATSSARKNRWDET 946
H + HGGATSSARKNRWDET
Sbjct: 120 GHATPGHGGATSSARKNRWDET 141
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,726,404
Number of extensions: 985225
Number of successful extensions: 4760
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 4623
Number of HSP's successfully gapped: 13
Length of query: 315
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 212
Effective length of database: 15,440,896
Effective search space: 3273469952
Effective search space used: 3273469952
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014100
(947 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928829.1| PREDICTED: splicing factor 3B subunit 1 isof... 510 e-145
Alignment gi|XP_003359650.1| PREDICTED: splicing factor 3B subunit 1 isof... 256 1e-68
Alignment gi|XP_003359649.1| PREDICTED: splicing factor 3B subunit 1 isof... 256 1e-68
>ref|XP_001928829.1| PREDICTED: splicing factor 3B subunit 1 isoform 1 [Sus scrofa].
Length = 1304
Score = 510 bits (1313), Expect = e-145
Identities = 259/297 (87%), Positives = 262/297 (88%), Gaps = 2/297 (0%)
Frame = +2
Query: 62 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA 241
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
Sbjct: 1 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA 60
Query: 242 TELEXXXXXXXXXXXLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK 421
TELE LLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
Sbjct: 61 TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK 120
Query: 422 KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE 601
KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE
Sbjct: 121 KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE 180
Query: 602 LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSPRWDETPGRAK 781
LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPS RWDETPGRAK
Sbjct: 181 LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAK 240
Query: 782 GSETPGAPPAQNMGSYT*SHTCGSCYSWTKRYTRPMHTS--HGGATSSARKNRWDET 946
GSETPGA P + T SHT + R P H + HGGATSSARKNRWDET
Sbjct: 241 GSETPGATPGSKIWDPTPSHTPAGA-ATPGRGDTPGHATPGHGGATSSARKNRWDET 296
>ref|XP_003359650.1| PREDICTED: splicing factor 3B subunit 1 isoform 3 [Sus scrofa].
Length = 144
Score = 256 bits (655), Expect = 1e-68
Identities = 128/139 (92%), Positives = 128/139 (92%)
Frame = +2
Query: 62 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA 241
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
Sbjct: 1 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA 60
Query: 242 TELEXXXXXXXXXXXLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK 421
TELE LLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
Sbjct: 61 TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK 120
Query: 422 KHRRTMIISPERLDPFADG 478
KHRRTMIISPERLDPFADG
Sbjct: 121 KHRRTMIISPERLDPFADG 139
>ref|XP_003359649.1| PREDICTED: splicing factor 3B subunit 1 isoform 2 [Sus scrofa].
Length = 144
Score = 256 bits (655), Expect = 1e-68
Identities = 128/139 (92%), Positives = 128/139 (92%)
Frame = +2
Query: 62 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA 241
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
Sbjct: 1 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA 60
Query: 242 TELEXXXXXXXXXXXLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK 421
TELE LLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
Sbjct: 61 TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK 120
Query: 422 KHRRTMIISPERLDPFADG 478
KHRRTMIISPERLDPFADG
Sbjct: 121 KHRRTMIISPERLDPFADG 139
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,627,003
Number of extensions: 611514
Number of successful extensions: 2905
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2875
Number of HSP's successfully gapped: 3
Length of query: 315
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 216
Effective length of database: 8,879,129
Effective search space: 1917891864
Effective search space used: 1917891864
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014100
(947 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_112456.2| splicing factor 3B subunit 1 [Mus musculus]. 510 e-145
>ref|NP_112456.2| splicing factor 3B subunit 1 [Mus musculus].
Length = 1304
Score = 510 bits (1313), Expect = e-145
Identities = 259/297 (87%), Positives = 262/297 (88%), Gaps = 2/297 (0%)
Frame = +2
Query: 62 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA 241
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
Sbjct: 1 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA 60
Query: 242 TELEXXXXXXXXXXXLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK 421
TELE LLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
Sbjct: 61 TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK 120
Query: 422 KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE 601
KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE
Sbjct: 121 KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE 180
Query: 602 LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSPRWDETPGRAK 781
LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPS RWDETPGRAK
Sbjct: 181 LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAK 240
Query: 782 GSETPGAPPAQNMGSYT*SHTCGSCYSWTKRYTRPMHTS--HGGATSSARKNRWDET 946
GSETPGA P + T SHT + R P H + HGGATSSARKNRWDET
Sbjct: 241 GSETPGATPGSKIWDPTPSHTPAGA-ATPGRGDTPGHATPGHGGATSSARKNRWDET 296
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,665,852
Number of extensions: 814906
Number of successful extensions: 3619
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3560
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 214
Effective length of database: 12,583,923
Effective search space: 2692959522
Effective search space used: 2692959522
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014100
(947 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036565.2| splicing factor 3B subunit 1 isoform 1 [Homo sa... 510 e-145
Alignment gi|NP_001005526.1| splicing factor 3B subunit 1 isoform 2 [Homo... 256 2e-68
>ref|NP_036565.2| splicing factor 3B subunit 1 isoform 1 [Homo sapiens].
Length = 1304
Score = 510 bits (1313), Expect = e-145
Identities = 259/297 (87%), Positives = 262/297 (88%), Gaps = 2/297 (0%)
Frame = +2
Query: 62 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA 241
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
Sbjct: 1 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA 60
Query: 242 TELEXXXXXXXXXXXLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK 421
TELE LLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
Sbjct: 61 TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK 120
Query: 422 KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE 601
KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE
Sbjct: 121 KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE 180
Query: 602 LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSPRWDETPGRAK 781
LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPS RWDETPGRAK
Sbjct: 181 LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAK 240
Query: 782 GSETPGAPPAQNMGSYT*SHTCGSCYSWTKRYTRPMHTS--HGGATSSARKNRWDET 946
GSETPGA P + T SHT + R P H + HGGATSSARKNRWDET
Sbjct: 241 GSETPGATPGSKIWDPTPSHTPAGA-ATPGRGDTPGHATPGHGGATSSARKNRWDET 296
>ref|NP_001005526.1| splicing factor 3B subunit 1 isoform 2 [Homo sapiens].
Length = 144
Score = 256 bits (655), Expect = 2e-68
Identities = 128/139 (92%), Positives = 128/139 (92%)
Frame = +2
Query: 62 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA 241
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
Sbjct: 1 MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA 60
Query: 242 TELEXXXXXXXXXXXLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK 421
TELE LLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
Sbjct: 61 TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK 120
Query: 422 KHRRTMIISPERLDPFADG 478
KHRRTMIISPERLDPFADG
Sbjct: 121 KHRRTMIISPERLDPFADG 139
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,080,236
Number of extensions: 970240
Number of successful extensions: 4522
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4478
Number of HSP's successfully gapped: 2
Length of query: 315
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 213
Effective length of database: 14,934,836
Effective search space: 3181120068
Effective search space used: 3181120068
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014100
(947 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 343 1e-91
>Sscrofa_Chr15
|| Length = 157681621
Score = 343 bits (173), Expect = 1e-91
Identities = 173/173 (100%)
Strand = Plus / Minus
Query: 555 agagagaaattaggcaacagctagcagaaaaagctaaagctggagaactaaaagtcgtca 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112469432 agagagaaattaggcaacagctagcagaaaaagctaaagctggagaactaaaagtcgtca 112469373
Query: 615 atggagcagcagcatcccagcctccctcaaaacgaaaacggcgttgggatcaaacagctg 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112469372 atggagcagcagcatcccagcctccctcaaaacgaaaacggcgttgggatcaaacagctg 112469313
Query: 675 atcagactcctggtgccactccaaaaaagctatcaagttgggatcaagcagag 727
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112469312 atcagactcctggtgccactccaaaaaagctatcaagttgggatcaagcagag 112469260
Score = 337 bits (170), Expect = 7e-90
Identities = 217/226 (96%), Gaps = 5/226 (2%)
Strand = Plus / Minus
Query: 726 agaccccaggacatactccttcccctagatgggatgagacaccaggacgtgcaaagggaa 785
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 112465903 agaccccaggacatactccttccctaagatgggatgagacaccaggacgtgcaaagggaa 112465844
Query: 786 gtgagactcctggagcaccccca-gctc-aaaatatgggatcctacacctagtcacacac 843
||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 112465843 gtgagactcctggagcaaccccaggctcaaaaatatgggatcctacacctagtcacacac 112465784
Query: 844 ctgcgggagctgctactcctggacgaagcgatacaccaggcccatgc-acacca-gccat 901
|||||||||||||||||||||||||| ||||||||||||| |||||| |||||| |||||
Sbjct: 112465783 ctgcgggagctgctactcctggacgaggcgatacaccagg-ccatgcaacaccaggccat 112465725
Query: 902 ggaggtgcaacttccagtgctcgtaaaaacagatgggatgagaccc 947
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112465724 ggaggtgcaacttccagtgctcgtaaaaacagatgggatgagaccc 112465679
Score = 337 bits (170), Expect = 7e-90
Identities = 170/170 (100%)
Strand = Plus / Minus
Query: 88 agatattgaagcacagattcgagaaattcaaggcaagaaggcagctcttgatgaagctca 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112476825 agatattgaagcacagattcgagaaattcaaggcaagaaggcagctcttgatgaagctca 112476766
Query: 148 aggagtgggccttgattctacaggttattatgaccaggaaatttatggtggaagtgacag 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112476765 aggagtgggccttgattctacaggttattatgaccaggaaatttatggtggaagtgacag 112476706
Query: 208 cagatttgctggatacgtgacatcaattgctgcaactgaacttgaagatg 257
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112476705 cagatttgctggatacgtgacatcaattgctgcaactgaacttgaagatg 112476656
Score = 236 bits (119), Expect = 2e-59
Identities = 119/119 (100%)
Strand = Plus / Minus
Query: 359 cagtatgatccatttgctgagcaccgacctccgaagattgcagaccgggaagatgaatac 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112474281 cagtatgatccatttgctgagcaccgacctccgaagattgcagaccgggaagatgaatac 112474222
Query: 419 aaaaagcacaggcggaccatgataatttctccagagcgtcttgatccttttgcagatgg 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112474221 aaaaagcacaggcggaccatgataatttctccagagcgtcttgatccttttgcagatgg 112474163
Score = 208 bits (105), Expect = 4e-51
Identities = 105/105 (100%)
Strand = Plus / Minus
Query: 257 gatgacgatgactactcatcatctacaagtttgctcggtcagaagaagccaggatatcat 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112474758 gatgacgatgactactcatcatctacaagtttgctcggtcagaagaagccaggatatcat 112474699
Query: 317 gcccctgtggcgctgcttaatgatataccacagtcaacagaacag 361
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112474698 gcccctgtggcgctgcttaatgatataccacagtcaacagaacag 112474654
Score = 168 bits (85), Expect = 3e-39
Identities = 88/89 (98%)
Strand = Plus / Minus
Query: 1 agcggcgacaagcggaagttctggggagcgccagttccgtctgtgtgttcgagtggacaa 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112494053 agcggcgacgagcggaagttctggggagcgccagttccgtctgtgtgttcgagtggacaa 112493994
Query: 61 aatggcgaagatcgccaagactcacgaag 89
|||||||||||||||||||||||||||||
Sbjct: 112493993 aatggcgaagatcgccaagactcacgaag 112493965
Score = 161 bits (81), Expect = 9e-37
Identities = 81/81 (100%)
Strand = Plus / Minus
Query: 476 ggagggaagacccctgatcctaaaatgaatgctaggacttacatggatgtaatgcgagaa 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112472331 ggagggaagacccctgatcctaaaatgaatgctaggacttacatggatgtaatgcgagaa 112472272
Query: 536 cagcatttaactaaagaagag 556
|||||||||||||||||||||
Sbjct: 112472271 cagcatttaactaaagaagag 112472251
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,246,519
Number of extensions: 136
Number of successful extensions: 136
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 7
Length of query: 947
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 926
Effective length of database: 2,808,413,156
Effective search space: 2600590582456
Effective search space used: 2600590582456
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)