Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014103
(1039 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029911.1| protein cornichon homolog [Bos taurus]. 242 4e-64
Alignment gi|NP_001193133.1| protein cornichon homolog 3 [Bos taurus]. 168 6e-42
Alignment gi|XP_002694043.1| PREDICTED: cornichon homolog 3-like [Bos tau... 168 6e-42
Alignment gi|XP_875526.3| PREDICTED: cornichon homolog 2-like, partial [B... 145 7e-35
Alignment gi|XP_002699439.1| PREDICTED: cornichon homolog 2 (Drosophila)-... 139 3e-33
Alignment gi|XP_002684306.1| PREDICTED: cornichon-like [Bos taurus]. 76 6e-14
Alignment gi|NP_001029510.1| protein cornichon homolog 4 [Bos taurus]. 63 4e-10
>ref|NP_001029911.1| protein cornichon homolog [Bos taurus].
Length = 144
Score = 242 bits (617), Expect = 4e-64
Identities = 115/142 (80%), Positives = 115/142 (80%)
Frame = +3
Query: 69 FTFAAFCYMXXXXXXXXXXXXXXWHIIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHAFF 248
FTFAAFCYM WHIIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHAFF
Sbjct: 3 FTFAAFCYMLALLLTAALIFFAIWHIIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHAFF 62
Query: 249 CVMFLCAAEWLTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGWCK 428
CVMFLCAAEWLTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGWCK
Sbjct: 63 CVMFLCAAEWLTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGWCK 122
Query: 429 XXXXXXXXXXXXXGMIYVLVSS 494
GMIYVLVSS
Sbjct: 123 LAFYLLAFFYYLYGMIYVLVSS 144
>ref|NP_001193133.1| protein cornichon homolog 3 [Bos taurus].
Length = 160
Score = 168 bits (426), Expect = 6e-42
Identities = 84/158 (53%), Positives = 93/158 (58%), Gaps = 16/158 (10%)
Frame = +3
Query: 69 FTFAAFCYMXXXXXXXXXXXXXXWHIIAFDELKTDYKNPIDQCNTLNP------------ 212
FTFAAFCYM WHIIAFDEL+TD+K+PIDQCN L+
Sbjct: 3 FTFAAFCYMLSLVLCAALIFFAIWHIIAFDELRTDFKSPIDQCNPLHARERLRNIERICF 62
Query: 213 ----LVLPEYLIHAFFCVMFLCAAEWLTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTI 380
LVLPEY IH+ FC+MFLCA EWLTLGLN+PLL YH WRY P S YDP +
Sbjct: 63 LLRKLVLPEYSIHSLFCIMFLCAQEWLTLGLNVPLLFYHFWRYFHCPADSSELAYDPPVV 122
Query: 381 MNADILAYCQKEGWCKXXXXXXXXXXXXXGMIYVLVSS 494
MNAD L+YCQKE WCK MIY LVSS
Sbjct: 123 MNADTLSYCQKEAWCKLAFYLLSFFYYLYCMIYTLVSS 160
>ref|XP_002694043.1| PREDICTED: cornichon homolog 3-like [Bos taurus].
Length = 160
Score = 168 bits (426), Expect = 6e-42
Identities = 84/158 (53%), Positives = 93/158 (58%), Gaps = 16/158 (10%)
Frame = +3
Query: 69 FTFAAFCYMXXXXXXXXXXXXXXWHIIAFDELKTDYKNPIDQCNTLNP------------ 212
FTFAAFCYM WHIIAFDEL+TD+K+PIDQCN L+
Sbjct: 3 FTFAAFCYMLSLVLCAALIFFAIWHIIAFDELRTDFKSPIDQCNPLHARERLRNIERICF 62
Query: 213 ----LVLPEYLIHAFFCVMFLCAAEWLTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTI 380
LVLPEY IH+ FC+MFLCA EWLTLGLN+PLL YH WRY P S YDP +
Sbjct: 63 LLRKLVLPEYSIHSLFCIMFLCAQEWLTLGLNVPLLFYHFWRYFHCPADSSELAYDPPVV 122
Query: 381 MNADILAYCQKEGWCKXXXXXXXXXXXXXGMIYVLVSS 494
MNAD L+YCQKE WCK MIY LVSS
Sbjct: 123 MNADTLSYCQKEAWCKLAFYLLSFFYYLYCMIYTLVSS 160
>ref|XP_875526.3| PREDICTED: cornichon homolog 2-like, partial [Bos taurus].
Length = 264
Score = 145 bits (365), Expect = 7e-35
Identities = 71/132 (53%), Positives = 81/132 (61%), Gaps = 16/132 (12%)
Frame = +3
Query: 144 IIAFDELKTDYKNPIDQ----------------CNTLNPLVLPEYLIHAFFCVMFLCAAE 275
IIAFDEL+TD+KNPIDQ C L LV+PEY IH FC+MFLCAAE
Sbjct: 132 IIAFDELRTDFKNPIDQGNPARARERLKNIERICCLLRKLVVPEYSIHGLFCLMFLCAAE 191
Query: 276 WLTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGWCKXXXXXXXXX 455
W+TLGLN+PLL YH+WRY RP +YD +IMNADIL YCQKE WCK
Sbjct: 192 WVTLGLNIPLLFYHLWRYFHRPADGSEVMYDAVSIMNADILNYCQKESWCKLAFYLLSFF 251
Query: 456 XXXXGMIYVLVS 491
M+Y LVS
Sbjct: 252 YYLYSMVYTLVS 263
>ref|XP_002699439.1| PREDICTED: cornichon homolog 2 (Drosophila)-like [Bos taurus].
Length = 298
Score = 139 bits (351), Expect = 3e-33
Identities = 66/111 (59%), Positives = 75/111 (67%), Gaps = 16/111 (14%)
Frame = +3
Query: 144 IIAFDELKTDYKNPIDQ----------------CNTLNPLVLPEYLIHAFFCVMFLCAAE 275
IIAFDEL+TD+KNPIDQ C L LV+PEY IH FC+MFLCAAE
Sbjct: 174 IIAFDELRTDFKNPIDQGNPARARERLKNIERICCLLRKLVVPEYSIHGLFCLMFLCAAE 233
Query: 276 WLTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGWCK 428
W+TLGLN+PLL YH+WRY RP +YD +IMNADIL YCQKE WCK
Sbjct: 234 WVTLGLNIPLLFYHLWRYFHRPADGSEVMYDAVSIMNADILNYCQKESWCK 284
>ref|XP_002684306.1| PREDICTED: cornichon-like [Bos taurus].
Length = 174
Score = 75.9 bits (185), Expect = 6e-14
Identities = 34/49 (69%), Positives = 35/49 (71%)
Frame = +3
Query: 69 FTFAAFCYMXXXXXXXXXXXXXXWHIIAFDELKTDYKNPIDQCNTLNPL 215
FTFAAFCYM WHIIAFDELKTDYKNPIDQCNTLNP+
Sbjct: 3 FTFAAFCYMLALLLTAALIFFAIWHIIAFDELKTDYKNPIDQCNTLNPI 51
>ref|NP_001029510.1| protein cornichon homolog 4 [Bos taurus].
Length = 139
Score = 63.2 bits (152), Expect = 4e-10
Identities = 37/118 (31%), Positives = 55/118 (46%)
Frame = +3
Query: 138 WHIIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHAFFCVMFLCAAEWLTLGLNMPLLAYH 317
+ II +L+ DY N C+ LN V+PE + H V+ L + W LN+P+ A++
Sbjct: 22 YFIITLSDLECDYINARSCCSKLNKWVIPELVGHTLVTVLMLISLHWFIFLLNLPVAAWN 81
Query: 318 IWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGWCKXXXXXXXXXXXXXGMIYVLVS 491
I+RY+ P G++DPT I N L KE K MI L++
Sbjct: 82 IYRYIMVP-SGNMGVFDPTEIHNRGQLKSHMKEAMIKLGFHLLCFFMYLYSMILALIN 138
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,652,823
Number of extensions: 827664
Number of successful extensions: 1741
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1737
Number of HSP's successfully gapped: 7
Length of query: 346
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 243
Effective length of database: 14,273,310
Effective search space: 3468414330
Effective search space used: 3468414330
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-014103
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014103
(1039 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_864395.1| PREDICTED: similar to cornichon-like isoform 1 ... 231 7e-61
Alignment gi|XP_851763.1| PREDICTED: similar to cornichon-like isoform 1 ... 231 7e-61
Alignment gi|XP_547821.2| PREDICTED: similar to cornichon-like isoform 1 ... 212 5e-55
Alignment gi|XP_864329.1| PREDICTED: similar to cornichon homolog isoform... 154 1e-37
Alignment gi|XP_864352.1| PREDICTED: similar to cornichon-like isoform 2 ... 75 8e-14
Alignment gi|XP_537238.2| PREDICTED: similar to Protein HSPC163 homolog [... 59 6e-09
>ref|XP_864395.1| PREDICTED: similar to cornichon-like isoform 1 isoform 4 [Canis
familiaris].
Length = 160
Score = 231 bits (590), Expect = 7e-61
Identities = 115/158 (72%), Positives = 115/158 (72%), Gaps = 16/158 (10%)
Frame = +3
Query: 69 FTFAAFCYMXXXXXXXXXXXXXXWHIIAFDELKTDYKNPIDQCNTLNP------------ 212
FTFAAFCYM WHIIAFDELKTDYKNPIDQCNTLNP
Sbjct: 3 FTFAAFCYMLALLLTAALIFFAIWHIIAFDELKTDYKNPIDQCNTLNPTVEKVKKIKRVK 62
Query: 213 ----LVLPEYLIHAFFCVMFLCAAEWLTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTI 380
LVLPEYLIHAFFCVMFLCAAEWLTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTI
Sbjct: 63 IALKLVLPEYLIHAFFCVMFLCAAEWLTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTI 122
Query: 381 MNADILAYCQKEGWCKXXXXXXXXXXXXXGMIYVLVSS 494
MNADILAYCQKEGWCK GMIYVLVSS
Sbjct: 123 MNADILAYCQKEGWCKLAFYLLAFFYYLYGMIYVLVSS 160
>ref|XP_851763.1| PREDICTED: similar to cornichon-like isoform 1 isoform 1 [Canis
familiaris].
Length = 160
Score = 231 bits (590), Expect = 7e-61
Identities = 115/158 (72%), Positives = 115/158 (72%), Gaps = 16/158 (10%)
Frame = +3
Query: 69 FTFAAFCYMXXXXXXXXXXXXXXWHIIAFDELKTDYKNPIDQCNTLNP------------ 212
FTFAAFCYM WHIIAFDELKTDYKNPIDQCNTLNP
Sbjct: 3 FTFAAFCYMLALLLTAALIFFAIWHIIAFDELKTDYKNPIDQCNTLNPRERERHFDNWLV 62
Query: 213 ----LVLPEYLIHAFFCVMFLCAAEWLTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTI 380
LVLPEYLIHAFFCVMFLCAAEWLTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTI
Sbjct: 63 FFFQLVLPEYLIHAFFCVMFLCAAEWLTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTI 122
Query: 381 MNADILAYCQKEGWCKXXXXXXXXXXXXXGMIYVLVSS 494
MNADILAYCQKEGWCK GMIYVLVSS
Sbjct: 123 MNADILAYCQKEGWCKLAFYLLAFFYYLYGMIYVLVSS 160
>ref|XP_547821.2| PREDICTED: similar to cornichon-like isoform 1 [Canis familiaris].
Length = 144
Score = 212 bits (539), Expect = 5e-55
Identities = 103/140 (73%), Positives = 103/140 (73%)
Frame = +3
Query: 3 EGPAPLFXXXXXXXXXXXXXXXFTFAAFCYMXXXXXXXXXXXXXXWHIIAFDELKTDYKN 182
EGPAP F FCYM WHIIAFDELKTDYKN
Sbjct: 5 EGPAPPFSAGSGAAPCSSPGHGGHLRGFCYMLALLLTAALIFFAIWHIIAFDELKTDYKN 64
Query: 183 PIDQCNTLNPLVLPEYLIHAFFCVMFLCAAEWLTLGLNMPLLAYHIWRYMSRPVMSGPGL 362
PIDQCNTLNPLVLPEYLI AFFCVMFLCAAEWLTLGLNMPLLAY IWRYMSRPVMSGPGL
Sbjct: 65 PIDQCNTLNPLVLPEYLICAFFCVMFLCAAEWLTLGLNMPLLAYPIWRYMSRPVMSGPGL 124
Query: 363 YDPTTIMNADILAYCQKEGW 422
YDPTTIMNADILAYCQKEGW
Sbjct: 125 YDPTTIMNADILAYCQKEGW 144
>ref|XP_864329.1| PREDICTED: similar to cornichon homolog isoform 2 [Canis
familiaris].
Length = 96
Score = 154 bits (390), Expect = 1e-37
Identities = 71/85 (83%), Positives = 71/85 (83%)
Frame = +3
Query: 69 FTFAAFCYMXXXXXXXXXXXXXXWHIIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHAFF 248
FTFAAFCYM WHIIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHAFF
Sbjct: 3 FTFAAFCYMLALLLTAALIFFAIWHIIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHAFF 62
Query: 249 CVMFLCAAEWLTLGLNMPLLAYHIW 323
CVMFLCAAEWLTLGLNMPLLAYHIW
Sbjct: 63 CVMFLCAAEWLTLGLNMPLLAYHIW 87
>ref|XP_864352.1| PREDICTED: similar to cornichon-like isoform 2 isoform 3 [Canis
familiaris].
Length = 53
Score = 75.5 bits (184), Expect = 8e-14
Identities = 34/49 (69%), Positives = 35/49 (71%)
Frame = +3
Query: 69 FTFAAFCYMXXXXXXXXXXXXXXWHIIAFDELKTDYKNPIDQCNTLNPL 215
FTFAAFCYM WHIIAFDELKTDYKNPIDQCNTLNP+
Sbjct: 3 FTFAAFCYMLALLLTAALIFFAIWHIIAFDELKTDYKNPIDQCNTLNPV 51
>ref|XP_537238.2| PREDICTED: similar to Protein HSPC163 homolog [Canis familiaris].
Length = 120
Score = 59.3 bits (142), Expect = 6e-09
Identities = 35/116 (30%), Positives = 52/116 (44%)
Frame = +3
Query: 144 IIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHAFFCVMFLCAAEWLTLGLNMPLLAYHIW 323
II +L+ DY N C+ LN V+PE + H V+ L + W LN+P ++I+
Sbjct: 5 IITLSDLECDYINARSCCSKLNKWVIPELIGHTVITVLMLVSLHWFIFLLNLPAATWNIY 64
Query: 324 RYMSRPVMSGPGLYDPTTIMNADILAYCQKEGWCKXXXXXXXXXXXXXGMIYVLVS 491
R++ P G++DPT I N L KE K MI L++
Sbjct: 65 RFIMVP-SGNMGVFDPTEIHNRGQLKSHMKEAMIKLGFHLLCFFMYLYSMILALIN 119
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,032,101
Number of extensions: 843008
Number of successful extensions: 1936
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1932
Number of HSP's successfully gapped: 6
Length of query: 346
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 242
Effective length of database: 15,407,560
Effective search space: 3728629520
Effective search space used: 3728629520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014103
(1039 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230454.1| protein cornichon homolog [Sus scrofa]. 242 3e-64
Alignment gi|XP_003353812.1| PREDICTED: protein cornichon homolog 2-like ... 174 7e-44
Alignment gi|XP_003353811.1| PREDICTED: protein cornichon homolog 2-like ... 167 1e-41
Alignment gi|XP_003130580.2| PREDICTED: protein cornichon homolog 3-like ... 129 3e-30
Alignment gi|XP_003122550.2| PREDICTED: protein cornichon homolog 2-like ... 124 1e-28
>ref|NP_001230454.1| protein cornichon homolog [Sus scrofa].
Length = 144
Score = 242 bits (617), Expect = 3e-64
Identities = 115/142 (80%), Positives = 115/142 (80%)
Frame = +3
Query: 69 FTFAAFCYMXXXXXXXXXXXXXXWHIIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHAFF 248
FTFAAFCYM WHIIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHAFF
Sbjct: 3 FTFAAFCYMLALLLTAALIFFAIWHIIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHAFF 62
Query: 249 CVMFLCAAEWLTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGWCK 428
CVMFLCAAEWLTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGWCK
Sbjct: 63 CVMFLCAAEWLTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGWCK 122
Query: 429 XXXXXXXXXXXXXGMIYVLVSS 494
GMIYVLVSS
Sbjct: 123 LAFYLLAFFYYLYGMIYVLVSS 144
>ref|XP_003353812.1| PREDICTED: protein cornichon homolog 2-like isoform 3 [Sus scrofa].
Length = 144
Score = 174 bits (441), Expect = 7e-44
Identities = 81/141 (57%), Positives = 91/141 (64%)
Frame = +3
Query: 69 FTFAAFCYMXXXXXXXXXXXXXXWHIIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHAFF 248
FTFAAFCYM WHIIAFDEL+TD+KNPIDQ N LV+PEY IH F
Sbjct: 3 FTFAAFCYMLTLVLCASLIFFVIWHIIAFDELRTDFKNPIDQGNPARALVVPEYSIHGLF 62
Query: 249 CVMFLCAAEWLTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGWCK 428
C+MFLCAAEW+TLGLN+PLL YH+WRY RP +YD +IMNADIL YCQKE WCK
Sbjct: 63 CLMFLCAAEWVTLGLNIPLLFYHLWRYFHRPADGSEVMYDAVSIMNADILNYCQKESWCK 122
Query: 429 XXXXXXXXXXXXXGMIYVLVS 491
M+Y LVS
Sbjct: 123 LAFYLLSFFYYLYSMVYTLVS 143
>ref|XP_003353811.1| PREDICTED: protein cornichon homolog 2-like isoform 2 [Sus scrofa].
Length = 160
Score = 167 bits (422), Expect = 1e-41
Identities = 82/157 (52%), Positives = 92/157 (58%), Gaps = 16/157 (10%)
Frame = +3
Query: 69 FTFAAFCYMXXXXXXXXXXXXXXWHIIAFDELKTDYKNPIDQ----------------CN 200
FTFAAFCYM WHIIAFDEL+TD+KNPIDQ C
Sbjct: 3 FTFAAFCYMLTLVLCASLIFFVIWHIIAFDELRTDFKNPIDQGNPARARERLKNIERICC 62
Query: 201 TLNPLVLPEYLIHAFFCVMFLCAAEWLTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTI 380
L LV+PEY IH FC+MFLCAAEW+TLGLN+PLL YH+WRY RP +YD +I
Sbjct: 63 LLRKLVVPEYSIHGLFCLMFLCAAEWVTLGLNIPLLFYHLWRYFHRPADGSEVMYDAVSI 122
Query: 381 MNADILAYCQKEGWCKXXXXXXXXXXXXXGMIYVLVS 491
MNADIL YCQKE WCK M+Y LVS
Sbjct: 123 MNADILNYCQKESWCKLAFYLLSFFYYLYSMVYTLVS 159
>ref|XP_003130580.2| PREDICTED: protein cornichon homolog 3-like [Sus scrofa].
Length = 151
Score = 129 bits (323), Expect = 3e-30
Identities = 71/149 (47%), Positives = 81/149 (54%), Gaps = 7/149 (4%)
Frame = +3
Query: 69 FTFAAFCYMXXXXXXXXXXXXXXWHIIAFD-ELKTDYKNPIDQCN----TLNPL--VLPE 227
FTFAAFCYM WH+ + E + P + +L PL VLPE
Sbjct: 3 FTFAAFCYMLSLVLCAALIFFAIWHVPSIPMEHRLACLPPFLGLHEVPVSLLPLQLVLPE 62
Query: 228 YLIHAFFCVMFLCAAEWLTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTIMNADILAYC 407
Y IH+ FC+MFLCA EWLTLGLN+PLL YH WRY P S YDP +MNAD L+YC
Sbjct: 63 YSIHSLFCIMFLCAQEWLTLGLNVPLLFYHFWRYFHCPADSSELAYDPPVVMNADTLSYC 122
Query: 408 QKEGWCKXXXXXXXXXXXXXGMIYVLVSS 494
QKE WCK MIY LVSS
Sbjct: 123 QKEAWCKLAFYLLSFFYYLYCMIYTLVSS 151
>ref|XP_003122550.2| PREDICTED: protein cornichon homolog 2-like isoform 1 [Sus scrofa].
Length = 115
Score = 124 bits (310), Expect = 1e-28
Identities = 56/99 (56%), Positives = 64/99 (64%)
Frame = +3
Query: 195 CNTLNPLVLPEYLIHAFFCVMFLCAAEWLTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPT 374
C L LV+PEY IH FC+MFLCAAEW+TLGLN+PLL YH+WRY RP +YD
Sbjct: 16 CCLLRKLVVPEYSIHGLFCLMFLCAAEWVTLGLNIPLLFYHLWRYFHRPADGSEVMYDAV 75
Query: 375 TIMNADILAYCQKEGWCKXXXXXXXXXXXXXGMIYVLVS 491
+IMNADIL YCQKE WCK M+Y LVS
Sbjct: 76 SIMNADILNYCQKESWCKLAFYLLSFFYYLYSMVYTLVS 114
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,181,911
Number of extensions: 524917
Number of successful extensions: 1197
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1195
Number of HSP's successfully gapped: 5
Length of query: 346
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 246
Effective length of database: 8,854,232
Effective search space: 2178141072
Effective search space used: 2178141072
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014103
(1039 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034049.2| protein cornichon homolog [Mus musculus]. 242 4e-64
Alignment gi|NP_001153683.1| protein cornichon homolog 3 isoform 2 [Mus m... 168 7e-42
Alignment gi|NP_034050.1| protein cornichon homolog 2 [Mus musculus]. 167 2e-41
Alignment gi|NP_082684.1| protein cornichon homolog 3 isoform 1 [Mus musc... 160 2e-39
Alignment gi|NP_001153684.1| protein cornichon homolog 3 isoform 3 [Mus m... 118 7e-27
Alignment gi|NP_084407.1| protein cornichon homolog 4 [Mus musculus]. 60 3e-09
>ref|NP_034049.2| protein cornichon homolog [Mus musculus].
Length = 144
Score = 242 bits (617), Expect = 4e-64
Identities = 115/142 (80%), Positives = 115/142 (80%)
Frame = +3
Query: 69 FTFAAFCYMXXXXXXXXXXXXXXWHIIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHAFF 248
FTFAAFCYM WHIIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHAFF
Sbjct: 3 FTFAAFCYMLALLLTAALIFFAIWHIIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHAFF 62
Query: 249 CVMFLCAAEWLTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGWCK 428
CVMFLCAAEWLTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGWCK
Sbjct: 63 CVMFLCAAEWLTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGWCK 122
Query: 429 XXXXXXXXXXXXXGMIYVLVSS 494
GMIYVLVSS
Sbjct: 123 LAFYLLAFFYYLYGMIYVLVSS 144
>ref|NP_001153683.1| protein cornichon homolog 3 isoform 2 [Mus musculus].
Length = 160
Score = 168 bits (425), Expect = 7e-42
Identities = 84/158 (53%), Positives = 92/158 (58%), Gaps = 16/158 (10%)
Frame = +3
Query: 69 FTFAAFCYMXXXXXXXXXXXXXXWHIIAFDELKTDYKNPIDQCNT--------------- 203
FTFAAFCYM WHIIAFDEL+TD+K+PIDQCN
Sbjct: 3 FTFAAFCYMLSLVLCAALIFFAIWHIIAFDELRTDFKSPIDQCNPVHARERLRNIERICF 62
Query: 204 -LNPLVLPEYLIHAFFCVMFLCAAEWLTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTI 380
L LVLPEY IH+ FC+MFLCA EWLTLGLN+PLL YH WRY P S YDP +
Sbjct: 63 LLRKLVLPEYSIHSLFCIMFLCAQEWLTLGLNVPLLFYHFWRYFHCPADSSELAYDPPVV 122
Query: 381 MNADILAYCQKEGWCKXXXXXXXXXXXXXGMIYVLVSS 494
MNAD L+YCQKE WCK MIY LVSS
Sbjct: 123 MNADTLSYCQKEAWCKLAFYLLSFFYYLYCMIYTLVSS 160
>ref|NP_034050.1| protein cornichon homolog 2 [Mus musculus].
Length = 160
Score = 167 bits (422), Expect = 2e-41
Identities = 82/157 (52%), Positives = 92/157 (58%), Gaps = 16/157 (10%)
Frame = +3
Query: 69 FTFAAFCYMXXXXXXXXXXXXXXWHIIAFDELKTDYKNPIDQ----------------CN 200
FTFAAFCYM WHIIAFDEL+TD+KNPIDQ C
Sbjct: 3 FTFAAFCYMLTLVLCASLIFFVIWHIIAFDELRTDFKNPIDQGNPARARERLKNIERICC 62
Query: 201 TLNPLVLPEYLIHAFFCVMFLCAAEWLTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTI 380
L LV+PEY IH FC+MFLCAAEW+TLGLN+PLL YH+WRY RP +YD +I
Sbjct: 63 LLRKLVVPEYSIHGLFCLMFLCAAEWVTLGLNIPLLFYHLWRYFHRPADGSEVMYDAVSI 122
Query: 381 MNADILAYCQKEGWCKXXXXXXXXXXXXXGMIYVLVS 491
MNADIL YCQKE WCK M+Y LVS
Sbjct: 123 MNADILNYCQKESWCKLAFYLLSFFYYLYSMVYTLVS 159
>ref|NP_082684.1| protein cornichon homolog 3 isoform 1 [Mus musculus].
Length = 179
Score = 160 bits (404), Expect = 2e-39
Identities = 83/177 (46%), Positives = 93/177 (52%), Gaps = 35/177 (19%)
Frame = +3
Query: 69 FTFAAFCYMXXXXXXXXXXXXXXWHIIAFDELKTDYKNPIDQCNTLNP------------ 212
FTFAAFCYM WHIIAFDEL+TD+K+PIDQCN ++
Sbjct: 3 FTFAAFCYMLSLVLCAALIFFAIWHIIAFDELRTDFKSPIDQCNPVHARERLRNIERICF 62
Query: 213 -----------------------LVLPEYLIHAFFCVMFLCAAEWLTLGLNMPLLAYHIW 323
LVLPEY IH+ FC+MFLCA EWLTLGLN+PLL YH W
Sbjct: 63 LLRKVRGVPPGGRRKGRRERGQQLVLPEYSIHSLFCIMFLCAQEWLTLGLNVPLLFYHFW 122
Query: 324 RYMSRPVMSGPGLYDPTTIMNADILAYCQKEGWCKXXXXXXXXXXXXXGMIYVLVSS 494
RY P S YDP +MNAD L+YCQKE WCK MIY LVSS
Sbjct: 123 RYFHCPADSSELAYDPPVVMNADTLSYCQKEAWCKLAFYLLSFFYYLYCMIYTLVSS 179
>ref|NP_001153684.1| protein cornichon homolog 3 isoform 3 [Mus musculus].
Length = 112
Score = 118 bits (296), Expect = 7e-27
Identities = 57/101 (56%), Positives = 63/101 (62%), Gaps = 16/101 (15%)
Frame = +3
Query: 69 FTFAAFCYMXXXXXXXXXXXXXXWHIIAFDELKTDYKNPIDQCNT--------------- 203
FTFAAFCYM WHIIAFDEL+TD+K+PIDQCN
Sbjct: 3 FTFAAFCYMLSLVLCAALIFFAIWHIIAFDELRTDFKSPIDQCNPVHARERLRNIERICF 62
Query: 204 -LNPLVLPEYLIHAFFCVMFLCAAEWLTLGLNMPLLAYHIW 323
L LVLPEY IH+ FC+MFLCA EWLTLGLN+PLL YH W
Sbjct: 63 LLRKLVLPEYSIHSLFCIMFLCAQEWLTLGLNVPLLFYHFW 103
>ref|NP_084407.1| protein cornichon homolog 4 [Mus musculus].
Length = 139
Score = 60.1 bits (144), Expect = 3e-09
Identities = 35/118 (29%), Positives = 54/118 (45%)
Frame = +3
Query: 138 WHIIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHAFFCVMFLCAAEWLTLGLNMPLLAYH 317
+ II +L+ DY N C+ LN V+PE + H V+ L + W LN+P+ ++
Sbjct: 22 YFIITLSDLECDYINARSCCSKLNKWVIPELVGHTIVTVLMLVSLHWFIFLLNLPVATWN 81
Query: 318 IWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGWCKXXXXXXXXXXXXXGMIYVLVS 491
I+R++ P G++DPT I N L KE K MI L++
Sbjct: 82 IYRFIMVP-SGNMGVFDPTEIHNRGQLKSHMKEAMIKLGFYLLCFFMYLYSMILALIN 138
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,620,499
Number of extensions: 733185
Number of successful extensions: 1722
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1719
Number of HSP's successfully gapped: 7
Length of query: 346
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 244
Effective length of database: 12,553,887
Effective search space: 3063148428
Effective search space used: 3063148428
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014103
(1039 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005767.1| protein cornichon homolog [Homo sapiens]. 242 5e-64
Alignment gi|NP_689708.1| protein cornichon homolog 3 [Homo sapiens]. 168 9e-42
Alignment gi|NP_872359.1| protein cornichon homolog 2 [Homo sapiens]. 167 2e-41
Alignment gi|NP_054903.1| protein cornichon homolog 4 [Homo sapiens]. 62 9e-10
>ref|NP_005767.1| protein cornichon homolog [Homo sapiens].
Length = 144
Score = 242 bits (617), Expect = 5e-64
Identities = 115/142 (80%), Positives = 115/142 (80%)
Frame = +3
Query: 69 FTFAAFCYMXXXXXXXXXXXXXXWHIIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHAFF 248
FTFAAFCYM WHIIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHAFF
Sbjct: 3 FTFAAFCYMLALLLTAALIFFAIWHIIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHAFF 62
Query: 249 CVMFLCAAEWLTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGWCK 428
CVMFLCAAEWLTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGWCK
Sbjct: 63 CVMFLCAAEWLTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGWCK 122
Query: 429 XXXXXXXXXXXXXGMIYVLVSS 494
GMIYVLVSS
Sbjct: 123 LAFYLLAFFYYLYGMIYVLVSS 144
>ref|NP_689708.1| protein cornichon homolog 3 [Homo sapiens].
Length = 160
Score = 168 bits (425), Expect = 9e-42
Identities = 84/158 (53%), Positives = 92/158 (58%), Gaps = 16/158 (10%)
Frame = +3
Query: 69 FTFAAFCYMXXXXXXXXXXXXXXWHIIAFDELKTDYKNPIDQCNT--------------- 203
FTFAAFCYM WHIIAFDEL+TD+K+PIDQCN
Sbjct: 3 FTFAAFCYMLSLVLCAALIFFAIWHIIAFDELRTDFKSPIDQCNPVHARERLRNIERICF 62
Query: 204 -LNPLVLPEYLIHAFFCVMFLCAAEWLTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTI 380
L LVLPEY IH+ FC+MFLCA EWLTLGLN+PLL YH WRY P S YDP +
Sbjct: 63 LLRKLVLPEYSIHSLFCIMFLCAQEWLTLGLNVPLLFYHFWRYFHCPADSSELAYDPPVV 122
Query: 381 MNADILAYCQKEGWCKXXXXXXXXXXXXXGMIYVLVSS 494
MNAD L+YCQKE WCK MIY LVSS
Sbjct: 123 MNADTLSYCQKEAWCKLAFYLLSFFYYLYCMIYTLVSS 160
>ref|NP_872359.1| protein cornichon homolog 2 [Homo sapiens].
Length = 160
Score = 167 bits (422), Expect = 2e-41
Identities = 82/157 (52%), Positives = 92/157 (58%), Gaps = 16/157 (10%)
Frame = +3
Query: 69 FTFAAFCYMXXXXXXXXXXXXXXWHIIAFDELKTDYKNPIDQ----------------CN 200
FTFAAFCYM WHIIAFDEL+TD+KNPIDQ C
Sbjct: 3 FTFAAFCYMLTLVLCASLIFFVIWHIIAFDELRTDFKNPIDQGNPARARERLKNIERICC 62
Query: 201 TLNPLVLPEYLIHAFFCVMFLCAAEWLTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTI 380
L LV+PEY IH FC+MFLCAAEW+TLGLN+PLL YH+WRY RP +YD +I
Sbjct: 63 LLRKLVVPEYSIHGLFCLMFLCAAEWVTLGLNIPLLFYHLWRYFHRPADGSEVMYDAVSI 122
Query: 381 MNADILAYCQKEGWCKXXXXXXXXXXXXXGMIYVLVS 491
MNADIL YCQKE WCK M+Y LVS
Sbjct: 123 MNADILNYCQKESWCKLAFYLLSFFYYLYSMVYTLVS 159
>ref|NP_054903.1| protein cornichon homolog 4 [Homo sapiens].
Length = 139
Score = 62.0 bits (149), Expect = 9e-10
Identities = 36/118 (30%), Positives = 54/118 (45%)
Frame = +3
Query: 138 WHIIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHAFFCVMFLCAAEWLTLGLNMPLLAYH 317
+ II +L+ DY N C+ LN V+PE + H V+ L + W LN+P+ ++
Sbjct: 22 YFIITLSDLECDYINARSCCSKLNKWVIPELIGHTIVTVLLLMSLHWFIFLLNLPVATWN 81
Query: 318 IWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGWCKXXXXXXXXXXXXXGMIYVLVS 491
I+RY+ P G++DPT I N L KE K MI L++
Sbjct: 82 IYRYIMVP-SGNMGVFDPTEIHNRGQLKSHMKEAMIKLGFHLLCFFMYLYSMILALIN 138
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,628,497
Number of extensions: 847678
Number of successful extensions: 1986
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1984
Number of HSP's successfully gapped: 4
Length of query: 346
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 243
Effective length of database: 14,901,872
Effective search space: 3621154896
Effective search space used: 3621154896
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014103
(1039 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|JH118455.1| Sus scrofa unplaced genomic scaffold ChrUScaf424 1055 0.0
Sscrofa_Chr01 1055 0.0
>gb|JH118455.1| Sus scrofa unplaced genomic scaffold ChrUScaf424
Length = 259311
Score = 1055 bits (532), Expect = 0.0
Identities = 538/540 (99%)
Strand = Plus / Plus
Query: 469 gcatgatctatgttttggtgagctcttagaacaacactcagaagaattggtccagttaag 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239329 gcatgatctatgttttggtgagctcttagaacaacactcagaagaattggtccagttaag 239388
Query: 529 tgcatgcaaaaagccaccaaatgaagggattctatccagcaagatcctgtttccaagagt 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239389 tgcatgcaaaaagccaccaaatgaagggattctatccagcaagatcctgtttccaagagt 239448
Query: 589 agcctatggaatctgatcagttactttaaaaaatgactccttattttttaaatgtttcca 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239449 agcctatggaatctgatcagttactttaaaaaatgactccttattttttaaatgtttcca 239508
Query: 649 cattttttgcttgtggaaagactgttttcatatgttatactcggataaagaatttaaatg 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239509 cattttttgcttgtggaaagactgttttcatatgttatactcggataaagaatttaaatg 239568
Query: 709 gaattacatataaattaatataaaatgatacctctggtgtggacaggtttgaacttgcac 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239569 gaattacatataaattaatataaaatgatacctctggtgtggacaggtttgaacttgcac 239628
Query: 769 tccttaaggaacagccataatcccttgaatgattgcattaattattgactgtctttagtc 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239629 tccttaaggaacagccataatcccttgaatgattgcattaattattgactgtctttagtc 239688
Query: 829 cattggaagcttttgtttttaggaacttatagggctcattttggttttactgaaatgcca 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239689 cattggaagcttttgtttttaggaacttatagggctcattttggttttactgaaatgcca 239748
Query: 889 tttaattataaattagctgtagatatcaggtgcttctgatgaactgaaaatatatatctg 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239749 tttaattataaattagctgtagatatcaggtgcttctgatgaactgaaaatatatatctg 239808
Query: 949 acctgtgggaaacttcggggttccgcatctatcatgtaggtgaatatatatggataaatt 1008
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 239809 acctgtgggaaacttcgggtttccgcatctatcatgtaggtgattatatatggataaatt 239868
Score = 250 bits (126), Expect = 1e-63
Identities = 126/126 (100%)
Strand = Plus / Plus
Query: 324 aggtatatgagtagaccagtgatgagtggaccaggactctatgaccctacaaccatcatg 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237007 aggtatatgagtagaccagtgatgagtggaccaggactctatgaccctacaaccatcatg 237066
Query: 384 aatgcagatattctagcttattgtcagaaagaaggatggtgcaaattagctttttatctt 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237067 aatgcagatattctagcttattgtcagaaagaaggatggtgcaaattagctttttatctt 237126
Query: 444 ctagca 449
||||||
Sbjct: 237127 ctagca 237132
Score = 230 bits (116), Expect = 1e-57
Identities = 116/116 (100%)
Strand = Plus / Plus
Query: 213 cttgtccttccagagtacctcatccatgctttcttctgtgtcatgtttctttgtgctgca 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235568 cttgtccttccagagtacctcatccatgctttcttctgtgtcatgtttctttgtgctgca 235627
Query: 273 gagtggcttaccttgggtctcaatatgcccctcttggcatatcatatttggaggta 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235628 gagtggcttaccttgggtctcaatatgcccctcttggcatatcatatttggaggta 235683
Score = 143 bits (72), Expect = 2e-31
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 72 acgttcgcggccttctgttacatgctggcgctgctgcttactgcagcgctcatcttcttc 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226409 acgttcgcggccttctgttacatgctggcgctgctgcttactgcagcgctcatcttcttc 226468
Query: 132 gccatttggcac 143
||||||||||||
Sbjct: 226469 gccatttggcac 226480
Score = 137 bits (69), Expect = 1e-29
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 144 attatagcatttgatgagctgaagactgattacaagaatcctatagaccagtgtaatacc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231384 attatagcatttgatgagctgaagactgattacaagaatcctatagaccagtgtaatacc 231443
Query: 204 ctgaatcct 212
|||||||||
Sbjct: 231444 ctgaatcct 231452
>Sscrofa_Chr01
|| Length = 315321322
Score = 1055 bits (532), Expect = 0.0
Identities = 538/540 (99%)
Strand = Plus / Minus
Query: 469 gcatgatctatgttttggtgagctcttagaacaacactcagaagaattggtccagttaag 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204311551 gcatgatctatgttttggtgagctcttagaacaacactcagaagaattggtccagttaag 204311492
Query: 529 tgcatgcaaaaagccaccaaatgaagggattctatccagcaagatcctgtttccaagagt 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204311491 tgcatgcaaaaagccaccaaatgaagggattctatccagcaagatcctgtttccaagagt 204311432
Query: 589 agcctatggaatctgatcagttactttaaaaaatgactccttattttttaaatgtttcca 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204311431 agcctatggaatctgatcagttactttaaaaaatgactccttattttttaaatgtttcca 204311372
Query: 649 cattttttgcttgtggaaagactgttttcatatgttatactcggataaagaatttaaatg 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204311371 cattttttgcttgtggaaagactgttttcatatgttatactcggataaagaatttaaatg 204311312
Query: 709 gaattacatataaattaatataaaatgatacctctggtgtggacaggtttgaacttgcac 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204311311 gaattacatataaattaatataaaatgatacctctggtgtggacaggtttgaacttgcac 204311252
Query: 769 tccttaaggaacagccataatcccttgaatgattgcattaattattgactgtctttagtc 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204311251 tccttaaggaacagccataatcccttgaatgattgcattaattattgactgtctttagtc 204311192
Query: 829 cattggaagcttttgtttttaggaacttatagggctcattttggttttactgaaatgcca 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204311191 cattggaagcttttgtttttaggaacttatagggctcattttggttttactgaaatgcca 204311132
Query: 889 tttaattataaattagctgtagatatcaggtgcttctgatgaactgaaaatatatatctg 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204311131 tttaattataaattagctgtagatatcaggtgcttctgatgaactgaaaatatatatctg 204311072
Query: 949 acctgtgggaaacttcggggttccgcatctatcatgtaggtgaatatatatggataaatt 1008
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 204311071 acctgtgggaaacttcgggtttccgcatctatcatgtaggtgattatatatggataaatt 204311012
Score = 281 bits (142), Expect = 4e-73
Identities = 142/142 (100%)
Strand = Plus / Minus
Query: 2 agagggccctgcgccgcttttctccgctggcgccggcgctgctccctgctcctccccggc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204148030 agagggccctgcgccgcttttctccgctggcgccggcgctgctccctgctcctccccggc 204147971
Query: 62 catggcgttcacgttcgcggccttctgttacatgctggcgctgctgcttactgcagcgct 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204147970 catggcgttcacgttcgcggccttctgttacatgctggcgctgctgcttactgcagcgct 204147911
Query: 122 catcttcttcgccatttggcac 143
||||||||||||||||||||||
Sbjct: 204147910 catcttcttcgccatttggcac 204147889
Score = 230 bits (116), Expect = 1e-57
Identities = 116/116 (100%)
Strand = Plus / Minus
Query: 213 cttgtccttccagagtacctcatccatgctttcttctgtgtcatgtttctttgtgctgca 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204138580 cttgtccttccagagtacctcatccatgctttcttctgtgtcatgtttctttgtgctgca 204138521
Query: 273 gagtggcttaccttgggtctcaatatgcccctcttggcatatcatatttggaggta 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204138520 gagtggcttaccttgggtctcaatatgcccctcttggcatatcatatttggaggta 204138465
Score = 137 bits (69), Expect = 1e-29
Identities = 69/69 (100%)
Strand = Plus / Minus
Query: 144 attatagcatttgatgagctgaagactgattacaagaatcctatagaccagtgtaatacc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204142767 attatagcatttgatgagctgaagactgattacaagaatcctatagaccagtgtaatacc 204142708
Query: 204 ctgaatcct 212
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Sbjct: 204142707 ctgaatcct 204142699
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,188,205
Number of extensions: 331
Number of successful extensions: 331
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 331
Number of HSP's successfully gapped: 9
Length of query: 1039
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1018
Effective length of database: 2,808,413,156
Effective search space: 2858964592808
Effective search space used: 2858964592808
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)