Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014114
(1016 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001032219.1| beta-catenin-interacting protein 1 [Bos taur... 158 6e-39
Alignment gi|XP_001253763.1| PREDICTED: catenin, beta interacting protein... 125 8e-29
Alignment gi|XP_001249474.3| PREDICTED: leucine zipper and CTNNBIP1 domai... 59 7e-09
>ref|NP_001032219.1| beta-catenin-interacting protein 1 [Bos taurus].
Length = 81
Score = 158 bits (400), Expect = 6e-39
Identities = 80/81 (98%), Positives = 81/81 (100%)
Frame = +2
Query: 323 MNREGAPGKSPEEMYIQQKVRVLLMLRKMGSNLTASEEEFLRTYAGVVNSQLSQLPQHSI 502
MNREGAPGKSPEEMYIQQKVRVLLMLRKMGSNLTA+EEEFLRTYAGVVNSQLSQLPQHSI
Sbjct: 1 MNREGAPGKSPEEMYIQQKVRVLLMLRKMGSNLTANEEEFLRTYAGVVNSQLSQLPQHSI 60
Query: 503 DQGAEDVVMAFSRSETEDRRQ 565
DQGAEDVVMAFSRSETEDRRQ
Sbjct: 61 DQGAEDVVMAFSRSETEDRRQ 81
>ref|XP_001253763.1| PREDICTED: catenin, beta interacting protein 1-like [Bos taurus].
Length = 299
Score = 125 bits (313), Expect = 8e-29
Identities = 62/63 (98%), Positives = 63/63 (100%)
Frame = +2
Query: 323 MNREGAPGKSPEEMYIQQKVRVLLMLRKMGSNLTASEEEFLRTYAGVVNSQLSQLPQHSI 502
MNREGAPGKSPEEMYIQQKVRVLLMLRKMGSNLTA+EEEFLRTYAGVVNSQLSQLPQHSI
Sbjct: 1 MNREGAPGKSPEEMYIQQKVRVLLMLRKMGSNLTANEEEFLRTYAGVVNSQLSQLPQHSI 60
Query: 503 DQG 511
DQG
Sbjct: 61 DQG 63
>ref|XP_001249474.3| PREDICTED: leucine zipper and CTNNBIP1 domain containing [Bos
taurus].
Length = 164
Score = 58.9 bits (141), Expect = 7e-09
Identities = 33/81 (40%), Positives = 47/81 (58%)
Frame = +2
Query: 323 MNREGAPGKSPEEMYIQQKVRVLLMLRKMGSNLTASEEEFLRTYAGVVNSQLSQLPQHSI 502
M+R+ GK ++Y QQKV +L LRK+G LTA +E FL AG + LSQ + S
Sbjct: 87 MDRDLMVGKLARDLYTQQKVEILTALRKLGEKLTADDENFLSANAGAI---LSQFEKVST 143
Query: 503 DQGAEDVVMAFSRSETEDRRQ 565
D G+ D V+A + E E ++
Sbjct: 144 DLGSGDKVLALASFEVEKTKK 164
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,378,930
Number of extensions: 1154308
Number of successful extensions: 6481
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6374
Number of HSP's successfully gapped: 3
Length of query: 338
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 235
Effective length of database: 14,273,310
Effective search space: 3354227850
Effective search space used: 3354227850
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-014114
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014114
(1016 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850747.1| PREDICTED: similar to catenin, beta interacting... 136 3e-32
Alignment gi|XP_548561.1| PREDICTED: similar to leucine zipper and CTNNBI... 57 3e-08
>ref|XP_850747.1| PREDICTED: similar to catenin, beta interacting protein 1 [Canis
familiaris].
Length = 560
Score = 136 bits (343), Expect = 3e-32
Identities = 68/70 (97%), Positives = 69/70 (98%)
Frame = +2
Query: 299 GVPRAGQGMNREGAPGKSPEEMYIQQKVRVLLMLRKMGSNLTASEEEFLRTYAGVVNSQL 478
G PRAGQGMNREGAPGKSPEEMYIQQKVRVLLMLRKMGSNLTA+EEEFLRTYAGVVNSQL
Sbjct: 213 GGPRAGQGMNREGAPGKSPEEMYIQQKVRVLLMLRKMGSNLTANEEEFLRTYAGVVNSQL 272
Query: 479 SQLPQHSIDQ 508
SQLPQHSIDQ
Sbjct: 273 SQLPQHSIDQ 282
Score = 95.1 bits (235), Expect = 9e-20
Identities = 47/77 (61%), Positives = 52/77 (67%), Gaps = 6/77 (7%)
Frame = +1
Query: 511 CRGCGDGVFQVGDGGPEAVAANPLEHPGSWQGPGDLCGP-----HQLSGGGSPSLAPVPH 675
CRGCGDG+FQVGDGGPEAVA NPLEHPGSWQGP DLCG Q++ P AP PH
Sbjct: 361 CRGCGDGIFQVGDGGPEAVAVNPLEHPGSWQGPRDLCGTRPAEWQQITFPIPP--APTPH 418
Query: 676 PT-PSCPATRGHRGGHQ 723
P P+ HRG H+
Sbjct: 419 PPHPTVTQQGWHRGSHR 435
>ref|XP_548561.1| PREDICTED: similar to leucine zipper and CTNNBIP1 domain containing
[Canis familiaris].
Length = 190
Score = 57.0 bits (136), Expect = 3e-08
Identities = 33/81 (40%), Positives = 46/81 (56%)
Frame = +2
Query: 323 MNREGAPGKSPEEMYIQQKVRVLLMLRKMGSNLTASEEEFLRTYAGVVNSQLSQLPQHSI 502
M+R+ GK +Y QQKV +L LRK+G LTA +E FL AG + LSQ + S
Sbjct: 113 MDRDLMVGKLERGLYTQQKVEILTALRKLGEKLTADDEAFLSANAGAI---LSQFEKVST 169
Query: 503 DQGAEDVVMAFSRSETEDRRQ 565
D G+ D V+A + E E ++
Sbjct: 170 DLGSGDKVLALASFEVEKTKK 190
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,438,917
Number of extensions: 1108741
Number of successful extensions: 7007
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6783
Number of HSP's successfully gapped: 3
Length of query: 338
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 235
Effective length of database: 15,440,896
Effective search space: 3628610560
Effective search space used: 3628610560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014114
(1016 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003362175.1| PREDICTED: hypothetical protein LOC100627651... 113 1e-25
Alignment gi|XP_003362151.1| PREDICTED: protein LZIC-like [Sus scrofa]. 59 6e-09
>ref|XP_003362175.1| PREDICTED: hypothetical protein LOC100627651, partial [Sus scrofa].
Length = 115
Score = 113 bits (283), Expect = 1e-25
Identities = 57/57 (100%), Positives = 57/57 (100%)
Frame = +2
Query: 338 APGKSPEEMYIQQKVRVLLMLRKMGSNLTASEEEFLRTYAGVVNSQLSQLPQHSIDQ 508
APGKSPEEMYIQQKVRVLLMLRKMGSNLTASEEEFLRTYAGVVNSQLSQLPQHSIDQ
Sbjct: 1 APGKSPEEMYIQQKVRVLLMLRKMGSNLTASEEEFLRTYAGVVNSQLSQLPQHSIDQ 57
>ref|XP_003362151.1| PREDICTED: protein LZIC-like [Sus scrofa].
Length = 190
Score = 58.5 bits (140), Expect = 6e-09
Identities = 33/81 (40%), Positives = 47/81 (58%)
Frame = +2
Query: 323 MNREGAPGKSPEEMYIQQKVRVLLMLRKMGSNLTASEEEFLRTYAGVVNSQLSQLPQHSI 502
M+R+ GK ++Y QQKV +L LRK+G LTA +E FL AG + LSQ + S
Sbjct: 113 MDRDLMVGKLERDLYTQQKVEILTALRKLGEKLTADDEAFLAANAGAI---LSQFEKVST 169
Query: 503 DQGAEDVVMAFSRSETEDRRQ 565
D G+ D V+A + E E ++
Sbjct: 170 DLGSGDKVLALASFEVEKTKK 190
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,919,069
Number of extensions: 854995
Number of successful extensions: 4198
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4119
Number of HSP's successfully gapped: 2
Length of query: 338
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 238
Effective length of database: 8,854,232
Effective search space: 2107307216
Effective search space used: 2107307216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014114
(1016 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001135402.1| beta-catenin-interacting protein 1 [Mus musc... 157 1e-38
Alignment gi|NP_075954.1| beta-catenin-interacting protein 1 [Mus musculu... 157 1e-38
Alignment gi|NP_081239.1| protein LZIC [Mus musculus]. 51 1e-06
>ref|NP_001135402.1| beta-catenin-interacting protein 1 [Mus musculus].
Length = 81
Score = 157 bits (398), Expect = 1e-38
Identities = 80/81 (98%), Positives = 81/81 (100%)
Frame = +2
Query: 323 MNREGAPGKSPEEMYIQQKVRVLLMLRKMGSNLTASEEEFLRTYAGVVNSQLSQLPQHSI 502
MNREGAPGKSPEEMYIQQKVRVLLMLRKMGSNLTASEEEFLRTYAGVV+SQLSQLPQHSI
Sbjct: 1 MNREGAPGKSPEEMYIQQKVRVLLMLRKMGSNLTASEEEFLRTYAGVVSSQLSQLPQHSI 60
Query: 503 DQGAEDVVMAFSRSETEDRRQ 565
DQGAEDVVMAFSRSETEDRRQ
Sbjct: 61 DQGAEDVVMAFSRSETEDRRQ 81
>ref|NP_075954.1| beta-catenin-interacting protein 1 [Mus musculus].
Length = 81
Score = 157 bits (398), Expect = 1e-38
Identities = 80/81 (98%), Positives = 81/81 (100%)
Frame = +2
Query: 323 MNREGAPGKSPEEMYIQQKVRVLLMLRKMGSNLTASEEEFLRTYAGVVNSQLSQLPQHSI 502
MNREGAPGKSPEEMYIQQKVRVLLMLRKMGSNLTASEEEFLRTYAGVV+SQLSQLPQHSI
Sbjct: 1 MNREGAPGKSPEEMYIQQKVRVLLMLRKMGSNLTASEEEFLRTYAGVVSSQLSQLPQHSI 60
Query: 503 DQGAEDVVMAFSRSETEDRRQ 565
DQGAEDVVMAFSRSETEDRRQ
Sbjct: 61 DQGAEDVVMAFSRSETEDRRQ 81
>ref|NP_081239.1| protein LZIC [Mus musculus].
Length = 190
Score = 51.2 bits (121), Expect = 1e-06
Identities = 30/81 (37%), Positives = 45/81 (55%)
Frame = +2
Query: 323 MNREGAPGKSPEEMYIQQKVRVLLMLRKMGSNLTASEEEFLRTYAGVVNSQLSQLPQHSI 502
M+R+ GK E+Y Q+KV +L LRK+G LT +E FL A V LSQ + S
Sbjct: 113 MDRDLMVGKLERELYTQRKVEILTALRKLGEKLTEDDETFLSANASAV---LSQFEKVST 169
Query: 503 DQGAEDVVMAFSRSETEDRRQ 565
+ G+ D V+A + + E ++
Sbjct: 170 ELGSGDKVLALAGFDVEKAKK 190
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,130,051
Number of extensions: 879984
Number of successful extensions: 4621
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4498
Number of HSP's successfully gapped: 3
Length of query: 338
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 236
Effective length of database: 12,553,887
Effective search space: 2962717332
Effective search space used: 2962717332
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014114
(1016 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001012329.1| beta-catenin-interacting protein 1 [Homo sap... 157 1e-38
Alignment gi|NP_064633.1| beta-catenin-interacting protein 1 [Homo sapien... 157 1e-38
Alignment gi|NP_115744.2| protein LZIC [Homo sapiens]. 58 1e-08
>ref|NP_001012329.1| beta-catenin-interacting protein 1 [Homo sapiens].
Length = 81
Score = 157 bits (397), Expect = 1e-38
Identities = 80/81 (98%), Positives = 80/81 (98%)
Frame = +2
Query: 323 MNREGAPGKSPEEMYIQQKVRVLLMLRKMGSNLTASEEEFLRTYAGVVNSQLSQLPQHSI 502
MNREGAPGKSPEEMYIQQKVRVLLMLRKMGSNLTASEEEFLRTYAGVVNSQLSQLP HSI
Sbjct: 1 MNREGAPGKSPEEMYIQQKVRVLLMLRKMGSNLTASEEEFLRTYAGVVNSQLSQLPPHSI 60
Query: 503 DQGAEDVVMAFSRSETEDRRQ 565
DQGAEDVVMAFSRSETEDRRQ
Sbjct: 61 DQGAEDVVMAFSRSETEDRRQ 81
>ref|NP_064633.1| beta-catenin-interacting protein 1 [Homo sapiens].
Length = 81
Score = 157 bits (397), Expect = 1e-38
Identities = 80/81 (98%), Positives = 80/81 (98%)
Frame = +2
Query: 323 MNREGAPGKSPEEMYIQQKVRVLLMLRKMGSNLTASEEEFLRTYAGVVNSQLSQLPQHSI 502
MNREGAPGKSPEEMYIQQKVRVLLMLRKMGSNLTASEEEFLRTYAGVVNSQLSQLP HSI
Sbjct: 1 MNREGAPGKSPEEMYIQQKVRVLLMLRKMGSNLTASEEEFLRTYAGVVNSQLSQLPPHSI 60
Query: 503 DQGAEDVVMAFSRSETEDRRQ 565
DQGAEDVVMAFSRSETEDRRQ
Sbjct: 61 DQGAEDVVMAFSRSETEDRRQ 81
>ref|NP_115744.2| protein LZIC [Homo sapiens].
Length = 190
Score = 58.2 bits (139), Expect = 1e-08
Identities = 32/81 (39%), Positives = 47/81 (58%)
Frame = +2
Query: 323 MNREGAPGKSPEEMYIQQKVRVLLMLRKMGSNLTASEEEFLRTYAGVVNSQLSQLPQHSI 502
M+R+ GK ++Y QQKV +L LRK+G LTA +E FL AG + LSQ + S
Sbjct: 113 MDRDLMVGKLERDLYTQQKVEILTALRKLGEKLTADDEAFLSANAGAI---LSQFEKVST 169
Query: 503 DQGAEDVVMAFSRSETEDRRQ 565
D G+ D ++A + E E ++
Sbjct: 170 DLGSGDKILALASFEVEKTKK 190
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,639,830
Number of extensions: 1073048
Number of successful extensions: 6382
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6268
Number of HSP's successfully gapped: 3
Length of query: 338
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 235
Effective length of database: 14,901,872
Effective search space: 3501939920
Effective search space used: 3501939920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014114
(1016 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896393.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 186 2e-44
>gb|GL896393.1| Sus scrofa unplaced genomic scaffold chrU_scaffold738
Length = 37053
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 419 ctgacagccagcgaggaggagttcctgcgcacctacgcgggggtagtgaacagccagctc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10629 ctgacagccagcgaggaggagttcctgcgcacctacgcgggggtagtgaacagccagctc 10688
Query: 479 agccagctgccccagcactccatcgaccagggtg 512
||||||||||||||||||||||||||||||||||
Sbjct: 10689 agccagctgccccagcactccatcgaccagggtg 10722
Score = 167 bits (84), Expect = 1e-38
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 697 actcggggtcatcgagggggacaccagtggtgcagttatgattggcttaaagggacggac 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30646 actcggggtcatcgagggggacaccagtggtgcagttatgattggcttaaagggacggac 30705
Query: 757 tcagattggctgcgggaagaaatg 780
||||||||||||||||||||||||
Sbjct: 30706 tcagattggctgcgggaagaaatg 30729
Score = 165 bits (83), Expect = 6e-38
Identities = 99/103 (96%), Gaps = 1/103 (0%)
Strand = Plus / Plus
Query: 847 aacaaaaattgcgcctcggtgtatggcttcccaggaagcttgccgagctctggtgctttt 906
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 30796 aacaaaaattgcgcctcggtgtatggcttcccaggaagcttgccgagctctggtgc-ttt 30854
Query: 907 atttaggtcacttttttagaatgtgaagaggtccgattggctg 949
|||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 30855 atttaggtcactttttaggaatgtgaagaggtccaattggctg 30897
Score = 163 bits (82), Expect = 2e-37
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 337 ggcccccgggaagagtccggaggagatgtacattcagcagaaggtccgagtgctgctcat 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9703 ggcccccgggaagagtccggaggagatgtacattcagcagaaggtccgagtgctgctcat 9762
Query: 397 gctgaggaagatgggctccaat 418
||||||||||||||||||||||
Sbjct: 9763 gctgaggaagatgggctccaat 9784
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 21,662,971
Number of extensions: 153
Number of successful extensions: 153
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 4
Length of query: 1016
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 995
Effective length of database: 2,808,413,156
Effective search space: 2794371090220
Effective search space used: 2794371090220
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)