Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014120
(1028 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776609.2| signaling lymphocytic activation molecule [Bos ... 320 1e-87
Alignment gi|NP_001178287.1| SLAM family member 7 [Bos taurus]. 66 6e-11
Alignment gi|XP_002685907.1| PREDICTED: SLAM family member 7-like [Bos ta... 66 6e-11
Alignment gi|XP_002685908.1| PREDICTED: CD84 molecule-like [Bos taurus]. 65 1e-10
Alignment gi|XP_588136.4| PREDICTED: CD84 molecule-like [Bos taurus]. 65 1e-10
Alignment gi|NP_001192723.1| SLAM family member 8 [Bos taurus]. 63 4e-10
Alignment gi|XP_002685919.1| PREDICTED: SLAM family member 8-like [Bos ta... 63 4e-10
Alignment gi|NP_001039467.1| CD48 antigen [Bos taurus]. 57 3e-08
Alignment gi|NP_001179279.1| natural killer cell receptor 2B4 [Bos taurus]. 55 1e-07
Alignment gi|XP_002685940.1| PREDICTED: CD244 natural killer cell recepto... 55 1e-07
>ref|NP_776609.2| signaling lymphocytic activation molecule [Bos taurus].
Length = 338
Score = 320 bits (821), Expect = 1e-87
Identities = 174/279 (62%), Positives = 194/279 (69%), Gaps = 3/279 (1%)
Frame = +1
Query: 199 CTTGEGSMNCPK-VLGRLGSSVLLPLTSEGIRKSMNKSIHILVSMAESPVHNIKKKIVSL 375
C TGEG + K +LG+LGSSVLLPL SE I +SMNKSIHILV+MAESP +KKKIVSL
Sbjct: 23 CRTGEGLTSSTKTILGQLGSSVLLPLASEEISRSMNKSIHILVTMAESPKDTVKKKIVSL 82
Query: 376 DLPEGSSPRYLEDGYAFHLENMSLSILESKKEDEGWYFLSLEENVSVQQFCLQLKIYEQV 555
DL +G SPR L DGY FHLEN+SL IL+S+KEDEGWYF+SLEENVSVQ F LQLK+YEQV
Sbjct: 83 DLRKGDSPR-LNDGYEFHLENLSLRILKSRKEDEGWYFISLEENVSVQHFSLQLKLYEQV 141
Query: 556 SRPEIKVLNSTQENGNCSLMLACMVEKGDHVTYSWSQEGGVILPSPANCSHLLYLTLGPQ 735
S P+IKVLN+TQE+GNCSLMLACMVEKGDHVTY+WS+E GV L SP N SHLLYLTLGPQ
Sbjct: 142 STPQIKVLNTTQEDGNCSLMLACMVEKGDHVTYNWSEEAGVPLLSPTNSSHLLYLTLGPQ 201
Query: 736 HADNVYICTANNPISNRSQTFIPWXXXXXXXXXXRQWXXXXXXXXXXXXXXXXXXXXXXX 915
HA+NVYICT +NPISN SQTFIPW RQW
Sbjct: 202 HANNVYICTVSNPISNSSQTFIPWPSCSSSAPESRQWGLYAGLFLGGIVGIIMILQVVIL 261
Query: 916 XXRRXGKATNI--THQWKQKPYYLCPSQKPGSFPKKLTP 1026
RR GK N T + K Y Q GS KK P
Sbjct: 262 LLRRRGKTDNYQPTTEAKSLTIY-AQVQTSGSVQKKPDP 299
>ref|NP_001178287.1| SLAM family member 7 [Bos taurus].
Length = 336
Score = 65.9 bits (159), Expect = 6e-11
Identities = 60/203 (29%), Positives = 92/203 (45%), Gaps = 8/203 (3%)
Frame = +1
Query: 205 TGEGSMNCPKVL-GRLGSSVLLPLT-SEGIRKSMNKSIHILVSMAESPVHNIKKKIVSLD 378
TG + PK L G +G SV+ PL S + S+ + + P KK +V +
Sbjct: 16 TGPAASGIPKKLVGAIGGSVIFPLNLSVNLVDSIIWVFNSTTLVTIQPKTAGKKALVIV- 74
Query: 379 LPEGSSPRYLEDGYAFHLENMSLSILESKKEDEGWYFLSLEENVSVQQFC--LQLKIYEQ 552
+ R LE F E SL + KK D G Y + + + +L +YE
Sbjct: 75 ----TQKRNLER-VNFPHEGYSLKLSRLKKNDSGIYRVEIHSSTLQDPLTQEYELHVYEY 129
Query: 553 VSRPEIKVLNSTQENGNCSLMLACMVEKGDH-VTYSWSQEGGVILPSPANCSH---LLYL 720
+S+P++ + +NG C L C +E G+ VTYSW L N SH +L +
Sbjct: 130 LSKPKVVIGLQENKNGTCVTNLTCSMEHGEEDVTYSWKS-----LDQTTNESHRGSILPI 184
Query: 721 TLGPQHADNVYICTANNPISNRS 789
+ + +D +IC A+NPIS+ S
Sbjct: 185 SWRWEKSDMTFICMASNPISSNS 207
>ref|XP_002685907.1| PREDICTED: SLAM family member 7-like [Bos taurus].
Length = 336
Score = 65.9 bits (159), Expect = 6e-11
Identities = 60/203 (29%), Positives = 92/203 (45%), Gaps = 8/203 (3%)
Frame = +1
Query: 205 TGEGSMNCPKVL-GRLGSSVLLPLT-SEGIRKSMNKSIHILVSMAESPVHNIKKKIVSLD 378
TG + PK L G +G SV+ PL S + S+ + + P KK +V +
Sbjct: 16 TGPAASGIPKKLVGAIGGSVIFPLNLSVNLVDSIIWVFNSTTLVTIQPKTAGKKALVIV- 74
Query: 379 LPEGSSPRYLEDGYAFHLENMSLSILESKKEDEGWYFLSLEENVSVQQFC--LQLKIYEQ 552
+ R LE F E SL + KK D G Y + + + +L +YE
Sbjct: 75 ----TQKRNLER-VNFPHEGYSLKLSRLKKNDSGIYRVEIHSSTLQDPLTQEYELHVYEY 129
Query: 553 VSRPEIKVLNSTQENGNCSLMLACMVEKGDH-VTYSWSQEGGVILPSPANCSH---LLYL 720
+S+P++ + +NG C L C +E G+ VTYSW L N SH +L +
Sbjct: 130 LSKPKVVIGLQENKNGTCVTNLTCSMEHGEEDVTYSWKS-----LDQTTNESHRGSILPI 184
Query: 721 TLGPQHADNVYICTANNPISNRS 789
+ + +D +IC A+NPIS+ S
Sbjct: 185 SWRWEKSDMTFICMASNPISSNS 207
>ref|XP_002685908.1| PREDICTED: CD84 molecule-like [Bos taurus].
Length = 351
Score = 64.7 bits (156), Expect = 1e-10
Identities = 53/190 (27%), Positives = 85/190 (44%), Gaps = 3/190 (1%)
Frame = +1
Query: 235 VLGRLGSSVLLPLTSEGIRKSMNKSIHILVSMAESPVHNIKKKIVSLDLPEGSSPRYLED 414
V G LG S PL + +K S H S+A N ++ + + R
Sbjct: 41 VNGILGESATFPLNIQPSQKVTIISWHSKTSVAFVKPGNFGEEPIVTITHQNYHERISVS 100
Query: 415 GYAFHLENMSLSILESKKEDEGWYF--LSLEENVSVQQFCLQLKIYEQVSRPEIKVLNST 588
G ++LE +L I ED G Y +++E + L++Y ++ +P+I T
Sbjct: 101 GQNYNLELRNLRI-----EDSGIYKADINVETSKVTTTRSYNLQVYRRLEKPKITQSFVT 155
Query: 589 QENGNCSLMLACMVEKGD-HVTYSWSQEGGVILPSPANCSHLLYLTLGPQHADNVYICTA 765
N C++ L C V+K + +VTYSWS G ++L + P + + Y CTA
Sbjct: 156 SVNSTCNVTLMCSVDKEEKNVTYSWSPRG--------EEGNVLQIFQTPDNQEETYTCTA 207
Query: 766 NNPISNRSQT 795
NP+SN S +
Sbjct: 208 WNPVSNNSDS 217
>ref|XP_588136.4| PREDICTED: CD84 molecule-like [Bos taurus].
Length = 351
Score = 64.7 bits (156), Expect = 1e-10
Identities = 53/190 (27%), Positives = 85/190 (44%), Gaps = 3/190 (1%)
Frame = +1
Query: 235 VLGRLGSSVLLPLTSEGIRKSMNKSIHILVSMAESPVHNIKKKIVSLDLPEGSSPRYLED 414
V G LG S PL + +K S H S+A N ++ + + R
Sbjct: 41 VNGILGESATFPLNIQPSQKVTIISWHSKTSVAFVKPGNFGEEPIVTITHQNYHERISVS 100
Query: 415 GYAFHLENMSLSILESKKEDEGWYF--LSLEENVSVQQFCLQLKIYEQVSRPEIKVLNST 588
G ++LE +L I ED G Y +++E + L++Y ++ +P+I T
Sbjct: 101 GQNYNLELRNLRI-----EDSGIYKADINVETSKVTTTRSYNLQVYRRLEKPKITQSFVT 155
Query: 589 QENGNCSLMLACMVEKGD-HVTYSWSQEGGVILPSPANCSHLLYLTLGPQHADNVYICTA 765
N C++ L C V+K + +VTYSWS G ++L + P + + Y CTA
Sbjct: 156 SVNSTCNVTLMCSVDKEEKNVTYSWSPRG--------EEGNVLQIFQTPDNQEETYTCTA 207
Query: 766 NNPISNRSQT 795
NP+SN S +
Sbjct: 208 WNPVSNNSDS 217
>ref|NP_001192723.1| SLAM family member 8 [Bos taurus].
Length = 280
Score = 63.2 bits (152), Expect = 4e-10
Identities = 42/133 (31%), Positives = 62/133 (46%), Gaps = 9/133 (6%)
Frame = +1
Query: 436 NMSLSILESKKEDEGWY-FLSLEENVSVQQFCLQLKIYEQVSRPEIKVL----NSTQENG 600
N+SL + + D G + L +++ + LQLK+Y+ V RP +KV Q
Sbjct: 85 NLSLELRPLESGDSGNFSVLLVDKQGRARTQTLQLKVYDAVPRPVVKVFIAVSGDAQPPK 144
Query: 601 NCSLMLACMVEKGDHVTYSWSQEGGVILP-SPANC---SHLLYLTLGPQHADNVYICTAN 768
C + L+C +TYSW +EG V L PA +L ++LGP Y C +
Sbjct: 145 TCHVFLSCRAPNTSDITYSWRREGTVDLDMEPAGLFTDGQVLSVSLGPGDKGVAYSCIVS 204
Query: 769 NPISNRSQTFIPW 807
NP+S T PW
Sbjct: 205 NPVSWDLATVTPW 217
>ref|XP_002685919.1| PREDICTED: SLAM family member 8-like [Bos taurus].
Length = 280
Score = 63.2 bits (152), Expect = 4e-10
Identities = 42/133 (31%), Positives = 62/133 (46%), Gaps = 9/133 (6%)
Frame = +1
Query: 436 NMSLSILESKKEDEGWY-FLSLEENVSVQQFCLQLKIYEQVSRPEIKVL----NSTQENG 600
N+SL + + D G + L +++ + LQLK+Y+ V RP +KV Q
Sbjct: 85 NLSLELRPLESGDSGNFSVLLVDKQGRARTQTLQLKVYDAVPRPVVKVFIAVSGDAQPPK 144
Query: 601 NCSLMLACMVEKGDHVTYSWSQEGGVILP-SPANC---SHLLYLTLGPQHADNVYICTAN 768
C + L+C +TYSW +EG V L PA +L ++LGP Y C +
Sbjct: 145 TCHVFLSCRAPNTSDITYSWRREGTVDLDMEPAGLFTDGQVLSVSLGPGDKGVAYSCIVS 204
Query: 769 NPISNRSQTFIPW 807
NP+S T PW
Sbjct: 205 NPVSWDLATVTPW 217
>ref|NP_001039467.1| CD48 antigen [Bos taurus].
Length = 239
Score = 56.6 bits (135), Expect = 3e-08
Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 5/151 (3%)
Frame = +1
Query: 358 KKIVSLDLPEGSSPRYLEDGY----AFHLENMSLSILESKKEDEGWYFLS-LEENVSVQQ 522
+KIV + E P Y + H ++ +L I +KED Y L L++N ++
Sbjct: 61 QKIVEWEFDE---PMYFNTKFKNRATLHPQSGALFIRNIQKEDSSTYLLRVLKDNGDEKE 117
Query: 523 FCLQLKIYEQVSRPEIKVLNSTQENGNCSLMLACMVEKGDHVTYSWSQEGGVILPSPANC 702
+ + L + + V +P I V + N NC LML+C+++ V Y+W E G P
Sbjct: 118 WKISLMVLDPVQKPVITVKKLWEMN-NCKLMLSCVIQD-QSVNYTWYWESGSF-PKQLQG 174
Query: 703 SHLLYLTLGPQHADNVYICTANNPISNRSQT 795
S +L + P++ Y C +NP+S+++ T
Sbjct: 175 S-VLQVVHTPENYSKSYTCQVSNPVSSQNST 204
>ref|NP_001179279.1| natural killer cell receptor 2B4 [Bos taurus].
Length = 373
Score = 54.7 bits (130), Expect = 1e-07
Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Frame = +1
Query: 388 GSSPRYLEDGYAFHLENMSLSILESKKEDEGWYFLSLEE---NVSVQQFCLQL---KIYE 549
G +P + F ++ +L I ++ +D G Y L + NV QF + + + +
Sbjct: 80 GQNPNCFNKSFNFTSKDFTLLIEAAQPQDSGLYILEVTSHAGNVWKHQFNVSIFESLLLD 139
Query: 550 QVSRPEIKVLNSTQENGNCSLMLACMVEKGDHVTYSWSQEGGVILPSPANCSHLLYLTLG 729
+V +P + + G C + L+C V +G V+Y+W +G ++ P N + L+
Sbjct: 140 RVEKPHLVEKWKVLDGGICQVTLSCSVARGGDVSYAW-YKGSNLIQIPGNITELVENI-- 196
Query: 730 PQHADNVYICTANNPIS 780
+A +VY C +NP+S
Sbjct: 197 DVNASHVYTCNVSNPVS 213
>ref|XP_002685940.1| PREDICTED: CD244 natural killer cell receptor 2B4-like [Bos
taurus].
Length = 373
Score = 54.7 bits (130), Expect = 1e-07
Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Frame = +1
Query: 388 GSSPRYLEDGYAFHLENMSLSILESKKEDEGWYFLSLEE---NVSVQQFCLQL---KIYE 549
G +P + F ++ +L I ++ +D G Y L + NV QF + + + +
Sbjct: 80 GQNPNCFNKSFNFTSKDFTLLIEAAQPQDSGLYILEVTSHAGNVWKHQFNVSIFESLLLD 139
Query: 550 QVSRPEIKVLNSTQENGNCSLMLACMVEKGDHVTYSWSQEGGVILPSPANCSHLLYLTLG 729
+V +P + + G C + L+C V +G V+Y+W +G ++ P N + L+
Sbjct: 140 RVEKPHLVEKWKVLDGGICQVTLSCSVARGGDVSYAW-YKGSNLIQIPGNITELVENI-- 196
Query: 730 PQHADNVYICTANNPIS 780
+A +VY C +NP+S
Sbjct: 197 DVNASHVYTCNVSNPVS 213
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.133 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,025,707
Number of extensions: 1255574
Number of successful extensions: 6224
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 6088
Number of HSP's successfully gapped: 14
Length of query: 342
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 239
Effective length of database: 14,273,310
Effective search space: 3411321090
Effective search space used: 3411321090
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-014120
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014120
(1028 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003084.1| signaling lymphocytic activation molecule pr... 313 1e-85
Alignment gi|XP_852458.1| PREDICTED: similar to SLAM family member 7 [Can... 66 6e-11
Alignment gi|XP_545760.2| PREDICTED: similar to lymphocyte antigen 9 [Can... 63 5e-10
Alignment gi|XP_545759.2| PREDICTED: similar to B-lymphocyte activation m... 62 7e-10
Alignment gi|XP_545758.2| PREDICTED: similar to CD84 antigen (leukocyte a... 57 3e-08
Alignment gi|XP_545761.2| PREDICTED: similar to CD244 natural killer cell... 54 2e-07
>ref|NP_001003084.1| signaling lymphocytic activation molecule precursor [Canis lupus
familiaris].
Length = 342
Score = 313 bits (803), Expect = 1e-85
Identities = 161/277 (58%), Positives = 192/277 (69%), Gaps = 1/277 (0%)
Frame = +1
Query: 199 CTTGEGSMNCPKVLGRLGSSVLLPLTSEGIRKSMNKSIHILVSMAESPVHNIKKKIVSLD 378
C TGE MNCP+V G+LGSS+ L L SEGI K MNKSIHILV+ AESP ++IKKKIVSLD
Sbjct: 23 CGTGESLMNCPEVPGKLGSSLQLSLASEGISKRMNKSIHILVTRAESPGNSIKKKIVSLD 82
Query: 379 LPEGSSPRYLEDGYAFHLENMSLSILESKKEDEGWYFLSLEENVSVQQFCLQLKIYEQVS 558
LPEG SPRYLE+GY FHLEN++L ILES++E+EGWYF++LEEN SVQ FCLQLK+YEQVS
Sbjct: 83 LPEGGSPRYLENGYKFHLENLTLRILESRRENEGWYFMTLEENFSVQHFCLQLKLYEQVS 142
Query: 559 RPEIKVLNSTQENGNCSLMLACMVEKGDHVTYSWSQEGGVILPSPANCSHLLYLTLGPQH 738
PEIKVLN TQENGNCS+MLAC VEKGD+V YSWS++ G+ PAN SHLL+L+LGPQH
Sbjct: 143 TPEIKVLNWTQENGNCSMMLACEVEKGDNVVYSWSEKLGIDPLIPANSSHLLHLSLGPQH 202
Query: 739 ADNVYICTANNPISNRSQTFIPWXXXXXXXXXXRQWXXXXXXXXXXXXXXXXXXXXXXXX 918
+NVY+CT +NP+SNRS +F PW RQW
Sbjct: 203 VNNVYVCTVSNPVSNRSWSFNPWSKCRPESSVPRQWRLYAGLFLGGIVGVILIFEVVLLL 262
Query: 919 XRRXGKATNITHQWKQKPYYL-CPSQKPGSFPKKLTP 1026
RR GK + ++K + QK GS KK P
Sbjct: 263 LRRRGKTNHYKPTKEEKSLTIYAQVQKSGSTQKKPDP 299
>ref|XP_852458.1| PREDICTED: similar to SLAM family member 7 [Canis familiaris].
Length = 810
Score = 65.9 bits (159), Expect = 6e-11
Identities = 53/192 (27%), Positives = 91/192 (47%), Gaps = 6/192 (3%)
Frame = +1
Query: 232 KVLGRLGSSVLLPLTSEGIRKSMNKSIHILVSMAESPVHNIKKKIVSLDLPEGSSPRYLE 411
+++G LG SV PLT GI+ I+ + +P+ I+ + + + +
Sbjct: 28 ELVGDLGGSVTFPLTLPGIQIDS-----IVWTFNTTPLITIQPRTPDRQANVIVTHSHNK 82
Query: 412 DGYAFHLENMSLSILESKKEDEGWYFLSLEENVSVQQFCLQ--LKIYEQVSRPEIKVLNS 585
F N SL + + K D G Y++ + + + F + L++YE +S+P++ +
Sbjct: 83 KRVDFLHGNYSLKLSKLNKSDSGDYYVVIYSSSFKEPFSQRYGLRVYEHLSKPKVTMGLQ 142
Query: 586 TQENGNCSLMLACMVEK-GDHVTYSWSQEGGVILPSPANCSH---LLYLTLGPQHADNVY 753
+ENG C L C V++ G+ VTYSW G AN S+ +L ++ +
Sbjct: 143 NKENGTCVTNLTCFVDQGGEDVTYSWESLG-----QAANKSYNGSILPISWRLGKGGMTF 197
Query: 754 ICTANNPISNRS 789
IC A NPIS+ S
Sbjct: 198 ICVARNPISSNS 209
>ref|XP_545760.2| PREDICTED: similar to lymphocyte antigen 9 [Canis familiaris].
Length = 636
Score = 62.8 bits (151), Expect = 5e-10
Identities = 56/207 (27%), Positives = 95/207 (45%), Gaps = 6/207 (2%)
Frame = +1
Query: 199 CTTGEGSMNCPK---VLGRLGSSVLLPLTSEGIRKSMNKSIHILVSMAESPVHNIKKKIV 369
CT S P V+G LG SV LPLT S + I ++ M + + + ++K
Sbjct: 242 CTAPGASKGEPMGETVVGVLGESVTLPLTF-----SASHHIENVIWMLNTSIISKEQK-- 294
Query: 370 SLDLPEGSSPRYLEDGYAFHLENMSLSILESKKEDEGWY--FLSLEENVSVQQFCLQLKI 543
++ P +D ++ SL I + K E+ G Y ++ E + ++ + L +
Sbjct: 295 --EMATADPPIKFKDPNKNSSQDFSLKIDQVKMENAGHYSAYVCSEASRVIKTKHITLLV 352
Query: 544 YEQVSRPEIKVLNSTQENGNCSLMLACMVE-KGDHVTYSWSQEGGVILPSPANCSHLLYL 720
Y ++ +P+I EN C + L C VE G +VTY W+ + S ++
Sbjct: 353 YGRLKKPKITWSLELAENDICRVSLTCSVEDSGHNVTYRWTPLPKGTIESQRGPHLNVFW 412
Query: 721 TLGPQHADNVYICTANNPISNRSQTFI 801
T G H + + C A+NP+S+ SQ F+
Sbjct: 413 TSGENHPN--FTCIASNPVSSSSQQFL 437
Score = 54.3 bits (129), Expect = 2e-07
Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 6/155 (3%)
Frame = +1
Query: 349 NIKKKIVSLDLPEGSSPRYLEDGYAFHLENMSLSILESKKEDEGWYFLSLE-ENVSV--- 516
N +K I+ +D + Y+ L N++L ED G Y + +N V
Sbjct: 91 NAQKDIIIMDKSYQDRLNISFNSYSLSLNNLTL-------EDAGPYKAQINYKNAKVTTD 143
Query: 517 QQFCLQLKIYEQVSRPEIKVLN-STQENGNCSLMLACMVEKG-DHVTYSWSQEGGVILPS 690
++F L L YEQV P++ + + + ++G+C++ L C VEK V YSW+ S
Sbjct: 144 KEFFLHL--YEQVQEPQVIIKSVNKSDSGSCNITLICFVEKARTSVLYSWTGRDANASES 201
Query: 691 PANCSHLLYLTLGPQHADNVYICTANNPISNRSQT 795
+ + TL H D Y CTA NP+S + +
Sbjct: 202 HEGSTLTIQWTLC--HPDLPYTCTARNPVSQNTSS 234
>ref|XP_545759.2| PREDICTED: similar to B-lymphocyte activation marker BLAST-1
precursor (BCM1 surface antigen) (Leucocyte antigen
MEM-102) (TCT.1) (Antigen CD48) [Canis familiaris].
Length = 241
Score = 62.4 bits (150), Expect = 7e-10
Identities = 36/123 (29%), Positives = 67/123 (54%), Gaps = 2/123 (1%)
Frame = +1
Query: 433 ENMSLSILESKKEDEGWYFLS-LEENVSVQQFCLQLKIYEQVSRPEIKVLNSTQENGNCS 609
E+ +L I + +KED Y L L+++ + + + L++ + V +P IK+ + N +C
Sbjct: 88 ESYALCIYKVQKEDSSTYILRVLKDSGKEEDWAISLEVLDPVRKPGIKIQTLQEVNNSCH 147
Query: 610 LMLACMVEKGDHVTYSWSQEGGVILPSPANC-SHLLYLTLGPQHADNVYICTANNPISNR 786
L L+C + G Y+W G P P + S +L +T+ Q+ + Y C A+NP+S++
Sbjct: 148 LKLSCEI-SGQSANYTWYGNSG---PLPTDLQSPVLEITVYRQNFSSYYTCQASNPVSSK 203
Query: 787 SQT 795
+ T
Sbjct: 204 NDT 206
>ref|XP_545758.2| PREDICTED: similar to CD84 antigen (leukocyte antigen) [Canis
familiaris].
Length = 619
Score = 57.0 bits (136), Expect = 3e-08
Identities = 53/202 (26%), Positives = 87/202 (43%), Gaps = 8/202 (3%)
Frame = +1
Query: 214 GSMNCPKVLGRLGSSVLLPLTSEGIRKSMNKSIHILVSMAESPVHNIKKKIVSLDLPEGS 393
G + V+G LG SV PL + ++ +N +V +E+ V +
Sbjct: 156 GDTDILTVIGTLGESVTFPLNIQESQQVIN-----IVWNSETSVAFVTPGDSETAPKVTV 210
Query: 394 SPRYLEDGYAFHLENMSLSILESKKEDEGWYFLSLE----ENVSVQQFCLQLKIYEQVSR 561
+ + D +N +L I + ED G Y + E + L+++ ++ +
Sbjct: 211 THQNYNDRINVSRQNYNLEISNLRMEDSGIYKADINTKILEGMVTTTRRYNLQVFRRLGK 270
Query: 562 PEIKVLNSTQENGNCSLMLACMVEK-GDHVTYSWS---QEGGVILPSPANCSHLLYLTLG 729
P+I + T N C++ L C VEK ++VTYSWS +EG I ++ T
Sbjct: 271 PKITQSSMTSINSTCNVTLTCSVEKEEENVTYSWSPLGEEGNAI---------RIFQT-- 319
Query: 730 PQHADNVYICTANNPISNRSQT 795
P Y CTA NP+SN S +
Sbjct: 320 PDSQRLTYTCTAWNPVSNSSDS 341
>ref|XP_545761.2| PREDICTED: similar to CD244 natural killer cell receptor 2B4 [Canis
familiaris].
Length = 285
Score = 54.3 bits (129), Expect = 2e-07
Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 4/135 (2%)
Frame = +1
Query: 403 YLEDGYAFHLENMSLSILESKKEDEGWYFLSL-EENVSVQQFCLQLKIYEQVSRPEIKVL 579
+ + +F EN++L I + G Y L + +EN V Q+ I++ + P+I
Sbjct: 6 HFDSKLSFTTENLALLIKAVRLNHSGCYNLEVTDENGKVDNHYFQVSIFDHIEMPQILKE 65
Query: 580 NSTQENGNCSLMLACMVEKGDHVTYSWSQEGGVILPSPANCSHLLYLTLGPQHADN---V 750
E C L L+C V +V+Y+W G ++ + N LT + N +
Sbjct: 66 WRVLEGDTCQLFLSCSVSSSGNVSYAW-YRGSELIQTEMN------LTRSEEQVVNDSYI 118
Query: 751 YICTANNPISNRSQT 795
Y C +NP+S+ + T
Sbjct: 119 YTCNVSNPVSSANHT 133
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.133 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,788,030
Number of extensions: 1291045
Number of successful extensions: 6368
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6236
Number of HSP's successfully gapped: 7
Length of query: 342
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 239
Effective length of database: 15,440,896
Effective search space: 3690374144
Effective search space used: 3690374144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014120
(1028 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230749.1| signaling lymphocytic activation molecule fa... 438 e-123
Alignment gi|NP_001230643.1| CD48 molecule [Sus scrofa]. 74 2e-13
Alignment gi|XP_001928360.1| PREDICTED: natural killer cell receptor 2B4-... 70 2e-12
Alignment gi|XP_001928499.3| PREDICTED: SLAM family member 5 [Sus scrofa]. 70 2e-12
Alignment gi|XP_001925652.1| PREDICTED: SLAM family member 7-like [Sus sc... 67 2e-11
Alignment gi|XP_001928602.1| PREDICTED: SLAM family member 6 [Sus scrofa]. 66 4e-11
Alignment gi|XP_003355146.1| PREDICTED: SLAM family member 5-like isoform... 60 1e-09
Alignment gi|XP_001928448.2| PREDICTED: t-lymphocyte surface antigen Ly-9... 59 3e-09
Alignment gi|XP_003125718.1| PREDICTED: SLAM family member 8-like isoform... 57 1e-08
Alignment gi|XP_003125717.1| PREDICTED: SLAM family member 8-like isoform... 57 1e-08
>ref|NP_001230749.1| signaling lymphocytic activation molecule family member 1 [Sus
scrofa].
Length = 339
Score = 438 bits (1127), Expect = e-123
Identities = 227/300 (75%), Positives = 230/300 (76%), Gaps = 1/300 (0%)
Frame = +1
Query: 130 MDPKRRXXXXXXXXXXXXXXXXXCTTGEGSMNCPKVLGRLGSSVLLPLTSEGIRKSMNKS 309
MDPKRR CTTGEGSMNCPKVLGRLGSSVLLPLTSEGIRKSMNKS
Sbjct: 1 MDPKRRLFSLNVLLLLSLAFELSCTTGEGSMNCPKVLGRLGSSVLLPLTSEGIRKSMNKS 60
Query: 310 IHILVSMAESPVHNIKKKIVSLDLPEGSSPRYLEDGYAFHLENMSLSILESKKEDEGWYF 489
IHILVSMAESPVHNIKKKIVSLDLPEGSSPRYLEDGYAFHLENMSLSILESKKEDEGWYF
Sbjct: 61 IHILVSMAESPVHNIKKKIVSLDLPEGSSPRYLEDGYAFHLENMSLSILESKKEDEGWYF 120
Query: 490 LSLEENVSVQQFCLQLKIYEQVSRPEIKVLNSTQENGNCSLMLACMVEKGDHVTYSWSQE 669
LSLEENVSVQQFCLQLK+YEQVSRPEIKVLNSTQENGNCSLMLACMVEKGDHVTYSWSQE
Sbjct: 121 LSLEENVSVQQFCLQLKLYEQVSRPEIKVLNSTQENGNCSLMLACMVEKGDHVTYSWSQE 180
Query: 670 GGVILPSPANCSHLLYLTLGPQHADNVYICTANNPISNRSQTFIPWXXXXXXXXXXRQWX 849
GGVILPSPANCSHLLYLTLGPQHADNVYICTANNPISNRSQTFIPW RQW
Sbjct: 181 GGVILPSPANCSHLLYLTLGPQHADNVYICTANNPISNRSQTFIPWSRCSPSSSESRQWG 240
Query: 850 XXXXXXXXXXXXXXXXXXXXXXXXRRXGKATNITHQWKQKPYYL-CPSQKPGSFPKKLTP 1026
RR GKA N + K + QKPGSF KK P
Sbjct: 241 LYVGLLLGGIIGVIMILQVVILLLRRRGKANNYQPAMEAKSLTIYAQVQKPGSFQKKPDP 300
>ref|NP_001230643.1| CD48 molecule [Sus scrofa].
Length = 243
Score = 73.6 bits (179), Expect = 2e-13
Identities = 42/130 (32%), Positives = 72/130 (55%), Gaps = 1/130 (0%)
Frame = +1
Query: 409 EDGYAFHLENMSLSILESKKEDEGWYFLSLEENV-SVQQFCLQLKIYEQVSRPEIKVLNS 585
+D L++ +L I + KKEDE Y L + + + + + + L + + V +P IK+
Sbjct: 82 KDRARLDLQSGALHIQKVKKEDESTYILKVNGDTRNEKNWKIMLTVLDPVPKPIIKIQKM 141
Query: 586 TQENGNCSLMLACMVEKGDHVTYSWSQEGGVILPSPANCSHLLYLTLGPQHADNVYICTA 765
+ N +C LML+C+++ HV Y+W QE G + P S +L +TL PQ+ Y C
Sbjct: 142 QEVNNSCYLMLSCVIQ-DQHVNYTWYQESG-LFPKELQ-SSVLEITLVPQNYSKFYSCQV 198
Query: 766 NNPISNRSQT 795
+NP+S++ T
Sbjct: 199 SNPVSSQKDT 208
>ref|XP_001928360.1| PREDICTED: natural killer cell receptor 2B4-like [Sus scrofa].
Length = 369
Score = 70.1 bits (170), Expect = 2e-12
Identities = 43/151 (28%), Positives = 78/151 (51%), Gaps = 15/151 (9%)
Frame = +1
Query: 388 GSSPRYLE-----------DGYAFHLENMSLSILESKKEDEGWYFLSL-EENVSVQQFCL 531
GS+P YLE D F E+++L I ++ D G Y L + ++ + +F
Sbjct: 69 GSAPSYLEESSNLTLNHLKDRLTFTTEDLTLLIKAAQPWDSGLYCLEITNDSGKIWKFEF 128
Query: 532 QLKIYEQVSRPEIKVLNSTQENGNCSLMLACMVEKGDHVTYSWSQEGGVILPSPANCSHL 711
Q+ +++ V +P ++ T + G C + L+C V +GD+++Y+W +GG ++ +P N +
Sbjct: 129 QVSVFDHVEKPHLQEQWKTLDRGVCQVTLSCSVSRGDNISYAW-YKGGELIQTPRNLT-- 185
Query: 712 LYLTLGPQHADN---VYICTANNPISNRSQT 795
L Q DN +Y C +NP+S + T
Sbjct: 186 ---KLEEQIDDNGLHIYTCNVSNPVSWANHT 213
>ref|XP_001928499.3| PREDICTED: SLAM family member 5 [Sus scrofa].
Length = 358
Score = 69.7 bits (169), Expect = 2e-12
Identities = 55/197 (27%), Positives = 91/197 (46%), Gaps = 11/197 (5%)
Frame = +1
Query: 238 LGRLGSSVLLPLTSEGIRKSMNKSIHILVSMAESPVHNIKKKIVSLDLP--EGSSPRYLE 411
LG +GS+ + + + + +S+ S+ IL S + K V++ +P G++
Sbjct: 17 LGAVGSNTDITMVNGILGESVTFSLSILKSEEVKSISWNSKTSVAVVVPGNSGTTITVTH 76
Query: 412 DGYAFHLE----NMSLSILESKKEDEGWYFLSLE----ENVSVQQFCLQLKIYEQVSRPE 567
Y L N +L + + ED G Y + E V+ C L++Y ++ +P+
Sbjct: 77 QNYYDRLNVSGLNYNLELRNLRMEDSGIYKADITVKSLEKVTTITKCYDLQVYRRLGKPK 136
Query: 568 IKVLNSTQENGNCSLMLACMVEKGD-HVTYSWSQEGGVILPSPANCSHLLYLTLGPQHAD 744
I T NG C++ L C VEK + +VTYSWS G ++L + P +
Sbjct: 137 ITRSLMTSMNGTCNVTLTCSVEKEEKNVTYSWSHLG--------REGNVLQIFQTPDNQH 188
Query: 745 NVYICTANNPISNRSQT 795
Y CTA NP+SN S +
Sbjct: 189 LTYTCTAWNPVSNNSDS 205
>ref|XP_001925652.1| PREDICTED: SLAM family member 7-like [Sus scrofa].
Length = 337
Score = 67.0 bits (162), Expect = 2e-11
Identities = 59/207 (28%), Positives = 91/207 (43%), Gaps = 15/207 (7%)
Frame = +1
Query: 232 KVLGRLGSSVLLPLT-SEGIRKSMNKSIHILVSMAESPVHNIKKKIVSLDLPEGSSPRYL 408
K++G +G SV PL S + S+ + + P KK ++ +
Sbjct: 27 KLVGAVGGSVTFPLNLSANMIDSIIWVFNTTTFVTIQPKMADKKALIIVTQQRN------ 80
Query: 409 EDGYAFHLENMSLSILESKKEDEGWY----FLSLEENVSVQQFCLQLKIYEQVSRPEIKV 576
++ F E+ SL + + KK D G Y + S +N Q++ +L++YE +S+P++ V
Sbjct: 81 KERVDFPNESYSLKLSKLKKNDSGAYRVEIYSSTLQNPLSQEY--ELRVYEYLSKPKVTV 138
Query: 577 LNSTQENGNCSLMLACMVEKGDH-VTYSW--------SQEGGVILPSPANCSHLLYLTLG 729
NG C L C E+G+ VTYSW GG ILP ++L
Sbjct: 139 GLQNNNNGTCVTNLTCSTEEGEEDVTYSWISLGQANNESYGGSILP----------ISLR 188
Query: 730 PQHADNVYICTANNPI-SNRSQTFIPW 807
+ D +IC A NPI SN S W
Sbjct: 189 REKRDMTFICLARNPISSNSSNPIFAW 215
>ref|XP_001928602.1| PREDICTED: SLAM family member 6 [Sus scrofa].
Length = 321
Score = 65.9 bits (159), Expect = 4e-11
Identities = 54/190 (28%), Positives = 91/190 (47%), Gaps = 3/190 (1%)
Frame = +1
Query: 235 VLGRLGSSVLLPLTSEGIRKSMNKS-IHILVSMAESPVHNIKKKIVSLDLPEGSSPRYLE 411
V G LG SV LPL K M+ + +H S+ + + ++ + P+ S+ +
Sbjct: 30 VNGTLGESVTLPLKFPEEEKIMSITWLHDGKSIIFIRPNKAQSPLIHVTDPKQSNRLNVT 89
Query: 412 DGYAFHLENMSLSILESKKEDEGWYFLSLEENVSVQQFCLQLKIYEQVSRPEIKVLNSTQ 591
Y+ L N++++ D G Y + SV + L+I+ ++ ++ L
Sbjct: 90 KSYSLQLSNLTMA-------DTGSYTAQIT-TTSVVFYSYYLRIFRRLGNLQVVTLTERS 141
Query: 592 ENGNCSLMLACMVEK-GDHVTYSWSQEGGVILPSPANCSHLLYLTLGPQH-ADNVYICTA 765
N C + L C VE D+V++SW Q G +LPS AN L ++ P++ D Y+C A
Sbjct: 142 RNETCVIHLTCSVEDPNDNVSFSW-QVSGSMLPSEAN----LTVSWDPKNFRDETYMCIA 196
Query: 766 NNPISNRSQT 795
NP+SN S +
Sbjct: 197 ENPVSNASSS 206
>ref|XP_003355146.1| PREDICTED: SLAM family member 5-like isoform 2 [Sus scrofa].
Length = 240
Score = 60.5 bits (145), Expect = 1e-09
Identities = 38/114 (33%), Positives = 56/114 (49%), Gaps = 5/114 (4%)
Frame = +1
Query: 469 EDEGWYFLSLE----ENVSVQQFCLQLKIYEQVSRPEIKVLNSTQENGNCSLMLACMVEK 636
ED G Y + E V+ C L++Y ++ +P+I T NG C++ L C VEK
Sbjct: 2 EDSGIYKADITVKSLEKVTTITKCYDLQVYRRLGKPKITRSLMTSMNGTCNVTLTCSVEK 61
Query: 637 GD-HVTYSWSQEGGVILPSPANCSHLLYLTLGPQHADNVYICTANNPISNRSQT 795
+ +VTYSWS G ++L + P + Y CTA NP+SN S +
Sbjct: 62 EEKNVTYSWSHLG--------REGNVLQIFQTPDNQHLTYTCTAWNPVSNNSDS 107
>ref|XP_001928448.2| PREDICTED: t-lymphocyte surface antigen Ly-9 isoform 2 [Sus
scrofa].
Length = 453
Score = 59.3 bits (142), Expect = 3e-09
Identities = 52/195 (26%), Positives = 85/195 (43%), Gaps = 10/195 (5%)
Frame = +1
Query: 235 VLGRLGSSVLLPLTSEGIRKSMNKSIHILVSMAESPVHNIKKKIVSLDLPEGSSPRYLED 414
V G LG SV LPL + + + + M S + I ++ L E P
Sbjct: 30 VTGTLGGSVTLPLMLP-----VGQHVESIFWMCRS----VPGTIATVTLEEAGGPDIFYQ 80
Query: 415 GYAFHLENMS-------LSILESKKEDEGWY--FLSLEENVSVQQFCLQLKIYEQVSRPE 567
+ + +S L I ED G Y ++L + + L +YEQ++RP
Sbjct: 81 AETRYWDRLSVVGPGRSLQISHLSWEDAGPYQAHINLRNSHIPHTWEYSLNVYEQLARPR 140
Query: 568 IKVLNSTQENGNCSLMLACMVE-KGDHVTYSWSQEGGVILPSPANCSHLLYLTLGPQHAD 744
+ + + NG+C ++L C+ E +G VTYSW+ G + S + +L ++L P
Sbjct: 141 VTMSSRISGNGHCLVILTCVAESRGGTVTYSWTPLGPRTVVS--HGGSVLSVSLRPGDGA 198
Query: 745 NVYICTANNPISNRS 789
+ C NP+SN S
Sbjct: 199 LNFTCMVKNPVSNSS 213
Score = 49.7 bits (117), Expect = 3e-06
Identities = 52/211 (24%), Positives = 83/211 (39%), Gaps = 7/211 (3%)
Frame = +1
Query: 235 VLGRLGSSVLLPL---TSEGIRKSMNKSIHILVSMAESPVHNIKKKIVSLDLPEGSSPRY 405
V+G LG S LPL + + K S ++ ++ K + +D +G R
Sbjct: 238 VIGTLGKSATLPLEVPVGQEVEKVTWSSRGLVATLQPGRAG----KPILVDGTQGPYSRR 293
Query: 406 L---EDGYAFHLENMSLSILESKKEDEGWYFLSLEENVSVQQFCLQLKIYEQVSRPEIKV 576
L + GY+ + + L + W L + F L ++YE + P I
Sbjct: 294 LSVPQHGYSLQISPLRL---QDSGPFRAWITLHNPPINITKDFTL--RVYEHLQEPSITA 348
Query: 577 LNSTQENGNCSLMLACMVEK-GDHVTYSWSQEGGVILPSPANCSHLLYLTLGPQHADNVY 753
+ E+G C + LAC +++ G+ V YSW G + S + + G + Y
Sbjct: 349 SSQIMEDGTCLVTLACSLDQAGEDVQYSWDPRGRRTVVSHGGSTLNISWRSG---VSDSY 405
Query: 754 ICTANNPISNRSQTFIPWXXXXXXXXXXRQW 846
CT NPIS S + IP R W
Sbjct: 406 RCTVENPISQSSGS-IPIRPLCSASYLPRSW 435
>ref|XP_003125718.1| PREDICTED: SLAM family member 8-like isoform 3 [Sus scrofa].
Length = 252
Score = 57.4 bits (137), Expect = 1e-08
Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 9/133 (6%)
Frame = +1
Query: 436 NMSLSILESKKEDEGWY-FLSLEENVSVQQFCLQLKIYEQVSRPEIKVL----NSTQENG 600
N+SL + + D G + L +++ LQLK+Y+ V RP ++V Q
Sbjct: 58 NLSLELRPLESGDSGNFSVLLVDKEGRAWTQTLQLKVYDAVPRPVVQVFIAISGDAQPLK 117
Query: 601 NCSLMLACMVEKGDHVTYSWSQEGGVILP-SPANC---SHLLYLTLGPQHADNVYICTAN 768
C + L+C +TYSW +EG + L P LL ++LGP Y C +
Sbjct: 118 TCQVFLSCWAPNISDITYSWRREGTLDLGVEPGELFMDRQLLSVSLGPGDKGVAYSCIVS 177
Query: 769 NPISNRSQTFIPW 807
NP+S T PW
Sbjct: 178 NPVSWDLATVTPW 190
>ref|XP_003125717.1| PREDICTED: SLAM family member 8-like isoform 2 [Sus scrofa].
Length = 296
Score = 57.4 bits (137), Expect = 1e-08
Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 9/133 (6%)
Frame = +1
Query: 436 NMSLSILESKKEDEGWY-FLSLEENVSVQQFCLQLKIYEQVSRPEIKVL----NSTQENG 600
N+SL + + D G + L +++ LQLK+Y+ V RP ++V Q
Sbjct: 101 NLSLELRPLESGDSGNFSVLLVDKEGRAWTQTLQLKVYDAVPRPVVQVFIAISGDAQPLK 160
Query: 601 NCSLMLACMVEKGDHVTYSWSQEGGVILP-SPANC---SHLLYLTLGPQHADNVYICTAN 768
C + L+C +TYSW +EG + L P LL ++LGP Y C +
Sbjct: 161 TCQVFLSCWAPNISDITYSWRREGTLDLGVEPGELFMDRQLLSVSLGPGDKGVAYSCIVS 220
Query: 769 NPISNRSQTFIPW 807
NP+S T PW
Sbjct: 221 NPVSWDLATVTPW 233
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.133 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,101,910
Number of extensions: 810257
Number of successful extensions: 4055
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 3958
Number of HSP's successfully gapped: 17
Length of query: 342
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 242
Effective length of database: 8,854,232
Effective search space: 2142724144
Effective search space used: 2142724144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014120
(1028 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038758.2| signaling lymphocytic activation molecule precu... 247 1e-65
Alignment gi|NP_031675.1| CD48 antigen precursor [Mus musculus]. 65 1e-10
Alignment gi|NP_032560.2| T-lymphocyte surface antigen Ly-9 precursor [Mu... 62 9e-10
Alignment gi|NP_083360.2| SLAM family member 8 precursor [Mus musculus]. 61 2e-09
Alignment gi|NP_038517.1| SLAM family member 5 precursor [Mus musculus]. 59 8e-09
Alignment gi|NP_653122.2| SLAM family member 7 precursor [Mus musculus]. 54 2e-07
Alignment gi|NP_083888.3| SLAM family member 9 precursor [Mus musculus]. 54 2e-07
Alignment gi|XP_001003781.1| PREDICTED: natural killer cell receptor 2B4 ... 54 2e-07
Alignment gi|NP_061199.2| natural killer cell receptor 2B4 precursor [Mus... 53 4e-07
Alignment gi|NP_109635.1| SLAM family member 6 [Mus musculus]. 53 4e-07
>ref|NP_038758.2| signaling lymphocytic activation molecule precursor [Mus musculus].
Length = 343
Score = 247 bits (630), Expect = 1e-65
Identities = 126/201 (62%), Positives = 153/201 (76%), Gaps = 3/201 (1%)
Frame = +1
Query: 205 TGEGSMNCPKVLGRLGSSVLLPLTSEG-IRKSMNKSIHILVSMAESPVHNIKKKIVSLDL 381
TG G M+CP +L +LG LPLT+E I KS+NKS+ ILV+MA SP KKIVS DL
Sbjct: 25 TGGGVMDCPVILQKLGQDTWLPLTNEHQINKSVNKSVRILVTMATSPGSKSNKKIVSFDL 84
Query: 382 PEGSSPRYLEDGYAFHLENMSLSILESKKEDEGWYFLSLEENVSVQQFCLQLKIYEQVSR 561
+GS P +LEDGY F +N+SL IL +++E EGWY +S+EENVSVQQFC QLK+YEQVS
Sbjct: 85 SKGSYPDHLEDGYHFQSKNLSLKILGNRRESEGWYLVSVEENVSVQQFCKQLKLYEQVSP 144
Query: 562 PEIKVLNSTQ--ENGNCSLMLACMVEKGDHVTYSWSQEGGVILPSPANCSHLLYLTLGPQ 735
PEIKVLN TQ ENG CSL+LAC V+KGDHVTYSWS E G L S AN SHLL++TL Q
Sbjct: 145 PEIKVLNKTQENENGTCSLLLACTVKKGDHVTYSWSDEAGTHLLSRANRSHLLHITLSNQ 204
Query: 736 HADNVYICTANNPISNRSQTF 798
H D++Y CTA+NP+S+ S+TF
Sbjct: 205 HQDSIYNCTASNPVSSISRTF 225
>ref|NP_031675.1| CD48 antigen precursor [Mus musculus].
Length = 240
Score = 64.7 bits (156), Expect = 1e-10
Identities = 38/132 (28%), Positives = 68/132 (51%), Gaps = 1/132 (0%)
Frame = +1
Query: 403 YLEDGYAFHLENMSLSILESKKEDEGWYFLSLEENVSVQQFCLQLKIYEQVSRPEIKVLN 582
YLE+ N +L I +KED+G Y++ + + + L++++ V +P I++
Sbjct: 85 YLEEN------NGALHISNVRKEDKGTYYMRVLRETE-NELKITLEVFDPVPKPSIEINK 137
Query: 583 STQENGNCSLMLACMVEKGDHVTYSWSQEGGVILPSPANC-SHLLYLTLGPQHADNVYIC 759
+ +C L L+C V K HV Y+W + G P P ++L L + PQ+ Y C
Sbjct: 138 TEASTDSCHLRLSCEV-KDQHVDYTWYESSG---PFPKKSPGYVLDLIVTPQNKSTFYTC 193
Query: 760 TANNPISNRSQT 795
+NP+S+++ T
Sbjct: 194 QVSNPVSSKNDT 205
>ref|NP_032560.2| T-lymphocyte surface antigen Ly-9 precursor [Mus musculus].
Length = 654
Score = 61.6 bits (148), Expect = 9e-10
Identities = 56/196 (28%), Positives = 89/196 (45%), Gaps = 8/196 (4%)
Frame = +1
Query: 235 VLGRLGSSVLLPLTSEGIRKSMNKSIHILVSMAESPVHNIKKKIVSLDL---PEGSSPRY 405
V+G LG V LPL R + N ++ S + ++ + D P+GS R
Sbjct: 256 VVGILGEPVTLPLEFRATRATKN----VVWVFNTSVISQERRGAATADSRRKPKGSEERR 311
Query: 406 LEDGYAFHLENMSLSILESKKEDEGWYFLSL----EENVSVQQFCLQLKIYEQVSRPEIK 573
+ ++ SL I + K ED G Y + + SV+ F L +Y+++ +P +
Sbjct: 312 VRTSD----QDQSLKISQLKMEDAGPYHAYVCSEASRDPSVRHFTLL--VYKRLEKPSVT 365
Query: 574 VLNSTQENGNCSLMLACMVE-KGDHVTYSWSQEGGVILPSPANCSHLLYLTLGPQHADNV 750
NG C ++L C V+ G++VTY+W + S SHL +H N
Sbjct: 366 KSPVHMMNGICEVVLTCSVDGGGNNVTYTWMPLQNKAVMSQGK-SHLNVSWESGEHLPN- 423
Query: 751 YICTANNPISNRSQTF 798
+ CTA+NP+SN S F
Sbjct: 424 FTCTAHNPVSNSSSQF 439
Score = 55.8 bits (133), Expect = 5e-08
Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 7/158 (4%)
Frame = +1
Query: 355 KKKIVSLDLPEGSSPRYLEDGYAFHLENMSLSILESKKEDEGWYFLSL-EENVSV---QQ 522
KK I LD + EDGY+ ++ N++ K D G Y + ++NV + ++
Sbjct: 93 KKDITILDKGYNGRLKVSEDGYSLYMSNLT-------KSDSGSYHAQINQKNVILTTNKE 145
Query: 523 FCLQLKIYEQVSRPEIKVLNST-QENGNCSLMLACMVE-KGDHVTYSWSQEGGVILPSPA 696
F L IYE++ +P+I V + T + +C+ L C V+ D V YSW++E + +
Sbjct: 146 FTLH--IYEKLQKPQIIVESVTPSDTDSCTFTLICTVKGTKDSVQYSWTREDTHL--NTY 201
Query: 697 NCSHLLYLTLGPQHADNVYICTANNPIS-NRSQTFIPW 807
+ SH L ++ D Y C A NP+S N SQ W
Sbjct: 202 DGSHTLRVSQSVCDPDLPYTCKAWNPVSQNSSQPVRIW 239
>ref|NP_083360.2| SLAM family member 8 precursor [Mus musculus].
Length = 278
Score = 60.8 bits (146), Expect = 2e-09
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 9/134 (6%)
Frame = +1
Query: 433 ENMSLSILESKKEDEGWY-FLSLEENVSVQQFCLQLKIYEQVSRPEIKVLNS----TQEN 597
+N+SL + K D G + L ++ L LK+Y+ V +PE++V + TQ
Sbjct: 82 DNLSLELGPLKPGDSGNFSVLMVDTRGQTWTQTLYLKVYDAVPKPEVQVFTAAAEETQPL 141
Query: 598 GNCSLMLACMVEKGDHVTYSWSQEGGV----ILPSPANCSHLLYLTLGPQHADNVYICTA 765
C + L+C +TYSW +EG V + S + +L ++LG D + C A
Sbjct: 142 NTCQVFLSCWAPNISDITYSWRREGTVDFNGEVHSHFSNGQVLSVSLGLGDKDVAFTCIA 201
Query: 766 NNPISNRSQTFIPW 807
+NP+S T PW
Sbjct: 202 SNPVSWDMTTVTPW 215
>ref|NP_038517.1| SLAM family member 5 precursor [Mus musculus].
Length = 329
Score = 58.5 bits (140), Expect = 8e-09
Identities = 40/123 (32%), Positives = 56/123 (45%), Gaps = 2/123 (1%)
Frame = +1
Query: 433 ENMSLSILESKKEDEGWYFLSL-EENVSVQQFCLQLKIYEQVSRPEIKVLNSTQENGNCS 609
+ L I + + ED G Y + EEN L IY ++ P+I + N C+
Sbjct: 88 QKYDLVIRDLRMEDAGTYKADINEENEETITKIYYLHIYRRLKTPKITQSLISSLNNTCN 147
Query: 610 LMLACMVEKGDH-VTYSWSQEGGVILPSPANCSHLLYLTLGPQHADNVYICTANNPISNR 786
+ L C VEK + VTYSWS G S++L + P Y CTA NP+SN
Sbjct: 148 ITLTCSVEKEEKDVTYSWSPFG--------EKSNVLQIVHSPMDQKLTYTCTAQNPVSNS 199
Query: 787 SQT 795
S +
Sbjct: 200 SDS 202
>ref|NP_653122.2| SLAM family member 7 precursor [Mus musculus].
Length = 333
Score = 54.3 bits (129), Expect = 2e-07
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 5/123 (4%)
Frame = +1
Query: 442 SLSILESKKEDEGWYFLSLEENVS----VQQFCLQLKIYEQVSRPEIKVLNSTQENGNCS 609
S+ + + KK D G Y + S +Q++ L +Y+ +SRP++ + + +NG C
Sbjct: 86 SMKLSQLKKNDSGAYRAEIYSTSSQASLIQEYVLH--VYKHLSRPKVTIDRQSNKNGTCV 143
Query: 610 LMLACMVEK-GDHVTYSWSQEGGVILPSPANCSHLLYLTLGPQHADNVYICTANNPISNR 786
+ L C ++ G++VTYSW G + + L + D C A NP+SN
Sbjct: 144 INLTCSTDQDGENVTYSWKAVGQG--DNQFHDGATLSIAWRSGEKDQALTCMARNPVSNS 201
Query: 787 SQT 795
T
Sbjct: 202 FST 204
>ref|NP_083888.3| SLAM family member 9 precursor [Mus musculus].
Length = 285
Score = 54.3 bits (129), Expect = 2e-07
Identities = 39/133 (29%), Positives = 58/133 (43%), Gaps = 6/133 (4%)
Frame = +1
Query: 409 EDGYAFHLENMSLSILESKKEDEGWYFLSLEENVSVQQFC--LQLKIYEQVSRPEIKVLN 582
E Y+ H+ N++ ED G Y + S L++Y ++S+P I V +
Sbjct: 88 ESSYSLHISNLTW-------EDSGLYNAQVNLKTSESHITKSYHLRVYRRLSKPHITVNS 140
Query: 583 STQENGNCSLMLACMVEK-GDHVTYSWSQEGGVILPSPANCSH---LLYLTLGPQHADNV 750
+ E G C++ L C +E+ G VTY W N SH +L + P
Sbjct: 141 NISEEGVCNISLTCSIERAGMDVTYIWLSS-----QDSTNTSHEGSVLSTSWRPGDKAPS 195
Query: 751 YICTANNPISNRS 789
Y C +NPISN S
Sbjct: 196 YTCRVSNPISNIS 208
>ref|XP_001003781.1| PREDICTED: natural killer cell receptor 2B4 isoform 2 [Mus
musculus].
Length = 398
Score = 53.9 bits (128), Expect = 2e-07
Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 1/127 (0%)
Frame = +1
Query: 412 DGYAFHLENMSLSILESKKEDEGWYFLSLE-ENVSVQQFCLQLKIYEQVSRPEIKVLNST 588
D Y F + +LSI ++ +D G Y L L N +V Q+ I + V P +K +
Sbjct: 84 DIYGFDYGDFALSIKSAQLQDSGHYLLELTYRNGTVCTKNFQILILDHVETPHLKAQWNA 143
Query: 589 QENGNCSLMLACMVEKGDHVTYSWSQEGGVILPSPANCSHLLYLTLGPQHADNVYICTAN 768
NG C L L+C V K D+V+Y+ G ++ + N +H T A +++ T N
Sbjct: 144 WTNGTCQLFLSCSVPKDDNVSYA-LYRGSTLISNQRNSTHWENQT----DASSLHTYTCN 198
Query: 769 NPISNRS 789
+SNR+
Sbjct: 199 --VSNRA 203
>ref|NP_061199.2| natural killer cell receptor 2B4 precursor [Mus musculus].
Length = 397
Score = 52.8 bits (125), Expect = 4e-07
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Frame = +1
Query: 412 DGYAFHLENMSLSILESKKEDEGWYFLSLEENVS-VQQFCLQLKIYEQVSRPEIKVLNST 588
D Y F + +LSI +K +D G Y L + V QL I + V P +K
Sbjct: 83 DIYGFDYGDFALSIKSAKLQDSGHYLLEITNTGGKVCNKNFQLLILDHVETPNLKAQWKP 142
Query: 589 QENGNCSLMLACMVEKGDHVTYSWSQEGGVILPSPANCSH 708
NG C L L+C+V K D+V+Y+ G ++ + N +H
Sbjct: 143 WTNGTCQLFLSCLVTKDDNVSYA-LYRGSTLISNQRNSTH 181
>ref|NP_109635.1| SLAM family member 6 [Mus musculus].
Length = 331
Score = 52.8 bits (125), Expect = 4e-07
Identities = 49/189 (25%), Positives = 82/189 (43%), Gaps = 6/189 (3%)
Frame = +1
Query: 241 GRLGSSVLLPLTSEGIRKSMNKSIHILVSMAESPVHNIKKKIVSLDLPEGSSPRYLEDGY 420
G LG S +LPL + K +I++ E + +++L PE SP+ +
Sbjct: 44 GVLGESAVLPL-----KLPAGKIANIIIWNYEWEASQVTALVINLSNPE--SPQIMNTDV 96
Query: 421 AFHL---ENMSLSILESKKEDEGWYFLSLEENVS-VQQFCLQLKIYEQVSRPEIKVLNST 588
L ++ SL I D G Y + S V F L+++E++ E
Sbjct: 97 KKRLNITQSYSLQISNLTMADTGSYTAQITTKDSEVITFKYILRVFERLGNLETTNYTLL 156
Query: 589 QENGNCSLMLACMVE-KGDHVTYSWSQEGGVILPSPANCSHLLYLTLGPQHA-DNVYICT 762
ENG C + LAC+++ + V+ W G + L P + + P+++ D Y+C
Sbjct: 157 LENGTCQIHLACVLKNQSQTVSVEWQATGNISLGGPN-----VTIFWDPRNSGDQTYVCR 211
Query: 763 ANNPISNRS 789
A N +SN S
Sbjct: 212 AKNAVSNLS 220
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.133 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,484,722
Number of extensions: 1063377
Number of successful extensions: 5343
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 5217
Number of HSP's successfully gapped: 11
Length of query: 342
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 240
Effective length of database: 12,553,887
Effective search space: 3012932880
Effective search space used: 3012932880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014120
(1028 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003028.1| signaling lymphocytic activation molecule precu... 287 1e-77
Alignment gi|NP_057466.1| natural killer cell receptor 2B4 isoform 1 prec... 62 9e-10
Alignment gi|NP_067004.3| SLAM family member 7 [Homo sapiens]. 59 9e-09
Alignment gi|NP_254273.2| SLAM family member 9 isoform 1 [Homo sapiens]. 59 9e-09
Alignment gi|NP_001160135.1| natural killer cell receptor 2B4 isoform 2 p... 58 1e-08
Alignment gi|NP_064510.1| SLAM family member 8 precursor [Homo sapiens]. 58 1e-08
Alignment gi|NP_001171810.1| SLAM family member 5 isoform 3 [Homo sapiens]. 55 1e-07
Alignment gi|NP_001171808.1| SLAM family member 5 isoform 1 [Homo sapiens]. 55 1e-07
Alignment gi|NP_003865.1| SLAM family member 5 isoform 2 [Homo sapiens]. 55 1e-07
Alignment gi|NP_001769.2| CD48 antigen precursor [Homo sapiens]. 53 4e-07
>ref|NP_003028.1| signaling lymphocytic activation molecule precursor [Homo sapiens].
Length = 335
Score = 287 bits (735), Expect = 1e-77
Identities = 150/273 (54%), Positives = 181/273 (66%), Gaps = 1/273 (0%)
Frame = +1
Query: 205 TGEGSMNCPKVLGRLGSSVLLPLTSEGIRKSMNKSIHILVSMAESPVHNIKKKIVSLDLP 384
TG MNCPK+L +LGS VLLPLT E I KSMNKSIHI+V+MA+S ++++ KIVSLD
Sbjct: 25 TGGRMMNCPKILRQLGSKVLLPLTYERINKSMNKSIHIVVTMAKSLENSVENKIVSLDPS 84
Query: 385 EGSSPRYLEDGYAFHLENMSLSILESKKEDEGWYFLSLEENVSVQQFCLQLKIYEQVSRP 564
E PRYL D Y F+LEN++L I ES+KEDEGWY ++LE+NVSVQ+FCLQL++YEQVS P
Sbjct: 85 EAGPPRYLGDRYKFYLENLTLGIRESRKEDEGWYLMTLEKNVSVQRFCLQLRLYEQVSTP 144
Query: 565 EIKVLNSTQENGNCSLMLACMVEKGDHVTYSWSQEGGVILPSPANCSHLLYLTLGPQHAD 744
EIKVLN TQENG C+L+L C VEKGDHV YSWS++ G +PAN SHLL LTLGPQHAD
Sbjct: 145 EIKVLNKTQENGTCTLILGCTVEKGDHVAYSWSEKAGTHPLNPANSSHLLSLTLGPQHAD 204
Query: 745 NVYICTANNPISNRSQTFIPWXXXXXXXXXXRQWXXXXXXXXXXXXXXXXXXXXXXXXXR 924
N+YICT +NPISN SQTF PW + W R
Sbjct: 205 NIYICTVSNPISNNSQTFSPWPGCRTDPSETKPW---AVYAGLLGGVIMILIMVVILQLR 261
Query: 925 RXGKATNITHQWKQKPYYL-CPSQKPGSFPKKL 1020
R GK + ++K + QKPG KKL
Sbjct: 262 RRGKTNHYQTTVEKKSLTIYAQVQKPGPLQKKL 294
>ref|NP_057466.1| natural killer cell receptor 2B4 isoform 1 precursor [Homo
sapiens].
Length = 365
Score = 62.0 bits (149), Expect = 9e-10
Identities = 37/144 (25%), Positives = 74/144 (51%), Gaps = 5/144 (3%)
Frame = +1
Query: 379 LPEGSSPRYLEDGYAFHLENMSLSILESKKEDEGWYFLSLEE-NVSVQQFCLQLKIYEQV 555
LP +S D ++F ++N+SL I ++++D G Y L + + VQ Q+ ++++V
Sbjct: 74 LPSNTS----NDRFSFIVKNLSLLIKAAQQQDSGLYCLEVTSISGKVQTATFQVFVFDKV 129
Query: 556 SRPEIKVLNSTQENGNCSLMLACMVEKGDHVTYSWSQEGGVILPSPANCSHLLYLTLGPQ 735
+P ++ + G C + L+C+V + +V+Y+W G ++ + N ++L +
Sbjct: 130 EKPRLQGQGKILDRGRCQVALSCLVSRDGNVSYAW-YRGSKLIQTAGNLTYL------DE 182
Query: 736 HAD----NVYICTANNPISNRSQT 795
D + Y C +NP+S S T
Sbjct: 183 EVDINGTHTYTCNVSNPVSWESHT 206
>ref|NP_067004.3| SLAM family member 7 [Homo sapiens].
Length = 335
Score = 58.5 bits (140), Expect = 9e-09
Identities = 51/191 (26%), Positives = 94/191 (49%), Gaps = 8/191 (4%)
Frame = +1
Query: 232 KVLGRLGSSVLLPLTSEGIRKSMNKSIHILV-SMAESPVHNIKKKIVSLDLPEGSSPRYL 408
+++G +G +V PL KS K + +V + +P+ I+ + ++ + + + +
Sbjct: 28 ELVGSVGGAVTFPL------KSKVKQVDSIVWTFNTTPLVTIQPEGGTIIVTQNRNRERV 81
Query: 409 EDGYAFHLENMSLSILESKKEDEGWYFLSLEENVSVQQFCLQ---LKIYEQVSRPEIKVL 579
+ F SL + + KK D G Y++ + + S+QQ Q L +YE +S+P++ +
Sbjct: 82 D----FPDGGYSLKLSKLKKNDSGIYYVGIYSS-SLQQPSTQEYVLHVYEHLSKPKVTMG 136
Query: 580 NSTQENGNCSLMLACMVEKGDH-VTYSWSQEGGVILPSPANCSH---LLYLTLGPQHADN 747
+ +NG C L C +E G+ V Y+W G AN SH +L ++ +D
Sbjct: 137 LQSNKNGTCVTNLTCCMEHGEEDVIYTWKALG-----QAANESHNGSILPISWRWGESDM 191
Query: 748 VYICTANNPIS 780
+IC A NP+S
Sbjct: 192 TFICVARNPVS 202
>ref|NP_254273.2| SLAM family member 9 isoform 1 [Homo sapiens].
Length = 289
Score = 58.5 bits (140), Expect = 9e-09
Identities = 45/139 (32%), Positives = 64/139 (46%), Gaps = 5/139 (3%)
Frame = +1
Query: 403 YLEDGYAFHLENMSLSILESKKEDEGWYFLSLEENVS----VQQFCLQLKIYEQVSRPEI 570
+L+ Y+ H+ N+S ED G Y + S +QQ+ + +Y +S P+I
Sbjct: 88 FLDPSYSLHISNLSW-------EDSGLYQAQVNLRTSQISTMQQY--NICVYRWLSEPQI 138
Query: 571 KVLNSTQENGNCSLMLACMVEK-GDHVTYSWSQEGGVILPSPANCSHLLYLTLGPQHADN 747
V + G CS+ L C VEK G +TYSW G + +L + P +
Sbjct: 139 TVNFESSGEGACSMSLVCSVEKAGMDMTYSWLSRGDSTY--TFHEGPVLSTSWRPGDSAL 196
Query: 748 VYICTANNPISNRSQTFIP 804
Y C ANNPISN S IP
Sbjct: 197 SYTCRANNPISNVSSCPIP 215
>ref|NP_001160135.1| natural killer cell receptor 2B4 isoform 2 precursor [Homo
sapiens].
Length = 370
Score = 58.2 bits (139), Expect = 1e-08
Identities = 36/149 (24%), Positives = 73/149 (48%), Gaps = 10/149 (6%)
Frame = +1
Query: 379 LPEGSSPRYLEDGYAFHLENMSLSILESKKEDEGWYFLSLE------ENVSVQQFCLQLK 540
LP +S D ++F ++N+SL I ++++D G Y L + + + Q F +
Sbjct: 74 LPSNTS----NDRFSFIVKNLSLLIKAAQQQDSGLYCLEVTSISGKVQTATFQVFVFESL 129
Query: 541 IYEQVSRPEIKVLNSTQENGNCSLMLACMVEKGDHVTYSWSQEGGVILPSPANCSHLLYL 720
+ ++V +P ++ + G C + L+C+V + +V+Y+W G ++ + N ++L
Sbjct: 130 LPDKVEKPRLQGQGKILDRGRCQVALSCLVSRDGNVSYAW-YRGSKLIQTAGNLTYL--- 185
Query: 721 TLGPQHAD----NVYICTANNPISNRSQT 795
+ D + Y C +NP+S S T
Sbjct: 186 ---DEEVDINGTHTYTCNVSNPVSWESHT 211
>ref|NP_064510.1| SLAM family member 8 precursor [Homo sapiens].
Length = 285
Score = 58.2 bits (139), Expect = 1e-08
Identities = 55/208 (26%), Positives = 86/208 (41%), Gaps = 16/208 (7%)
Frame = +1
Query: 232 KVLGRLGSSVLLPLTS-------EGIRKSMNKSIHILVSMAESPVHNIKKKIVSLDLPEG 390
+VL ++G SVLL E I +S+ S +L + + +
Sbjct: 24 QVLSKVGGSVLLVAARPPGFQVREAIWRSLWPSEELLATFFRGSLETLYHS--------- 74
Query: 391 SSPRYLEDGYAFHLENMSLSILESKKEDEGWY-FLSLEENVSVQQFCLQLKIYEQVSRPE 567
R+L G A N+SL + + D G + L ++ LQLK+Y+ V RP
Sbjct: 75 ---RFL--GRAQLHSNLSLELGPLESGDSGNFSVLMVDTRGQPWTQTLQLKVYDAVPRPV 129
Query: 568 IKVL----NSTQENGNCSLMLACMVEKGDHVTYSWSQEG----GVILPSPANCSHLLYLT 723
++V Q + C + L+C +TYSW +E G+ S +L ++
Sbjct: 130 VQVFIAVERDAQPSKTCQVFLSCWAPNISEITYSWRRETTMDFGMEPHSLFTDGQVLSIS 189
Query: 724 LGPQHADNVYICTANNPISNRSQTFIPW 807
LGP D Y C +NP+S T PW
Sbjct: 190 LGPGDRDVAYSCIVSNPVSWDLATVTPW 217
>ref|NP_001171810.1| SLAM family member 5 isoform 3 [Homo sapiens].
Length = 272
Score = 55.1 bits (131), Expect = 1e-07
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Frame = +1
Query: 436 NMSLSILESKKEDEGWYFLSLEENVSVQQFCLQ--LKIYEQVSRPEIKVLNSTQENGNCS 609
N +L I + + ED G Y + + L+IY ++ +P+I N C+
Sbjct: 91 NYNLVISDLRMEDAGDYKADINTQADPYTTTKRYNLQIYRRLGKPKITQSLMASVNSTCN 150
Query: 610 LMLACMVEKGD-HVTYSWSQEGGVILPSPANCSHLLYLTLGPQHADNVYICTANNPISNR 786
+ L C VEK + +VTY+WS G ++L + P+ + Y CTA NP+SN
Sbjct: 151 VTLTCSVEKEEKNVTYNWSPLG--------EEGNVLQIFQTPEDQELTYTCTAQNPVSNN 202
Query: 787 SQT 795
S +
Sbjct: 203 SDS 205
>ref|NP_001171808.1| SLAM family member 5 isoform 1 [Homo sapiens].
Length = 345
Score = 55.1 bits (131), Expect = 1e-07
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Frame = +1
Query: 436 NMSLSILESKKEDEGWYFLSLEENVSVQQFCLQ--LKIYEQVSRPEIKVLNSTQENGNCS 609
N +L I + + ED G Y + + L+IY ++ +P+I N C+
Sbjct: 91 NYNLVISDLRMEDAGDYKADINTQADPYTTTKRYNLQIYRRLGKPKITQSLMASVNSTCN 150
Query: 610 LMLACMVEKGD-HVTYSWSQEGGVILPSPANCSHLLYLTLGPQHADNVYICTANNPISNR 786
+ L C VEK + +VTY+WS G ++L + P+ + Y CTA NP+SN
Sbjct: 151 VTLTCSVEKEEKNVTYNWSPLG--------EEGNVLQIFQTPEDQELTYTCTAQNPVSNN 202
Query: 787 SQT 795
S +
Sbjct: 203 SDS 205
>ref|NP_003865.1| SLAM family member 5 isoform 2 [Homo sapiens].
Length = 328
Score = 55.1 bits (131), Expect = 1e-07
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Frame = +1
Query: 436 NMSLSILESKKEDEGWYFLSLEENVSVQQFCLQ--LKIYEQVSRPEIKVLNSTQENGNCS 609
N +L I + + ED G Y + + L+IY ++ +P+I N C+
Sbjct: 91 NYNLVISDLRMEDAGDYKADINTQADPYTTTKRYNLQIYRRLGKPKITQSLMASVNSTCN 150
Query: 610 LMLACMVEKGD-HVTYSWSQEGGVILPSPANCSHLLYLTLGPQHADNVYICTANNPISNR 786
+ L C VEK + +VTY+WS G ++L + P+ + Y CTA NP+SN
Sbjct: 151 VTLTCSVEKEEKNVTYNWSPLG--------EEGNVLQIFQTPEDQELTYTCTAQNPVSNN 202
Query: 787 SQT 795
S +
Sbjct: 203 SDS 205
>ref|NP_001769.2| CD48 antigen precursor [Homo sapiens].
Length = 243
Score = 53.1 bits (126), Expect = 4e-07
Identities = 34/120 (28%), Positives = 64/120 (53%), Gaps = 2/120 (1%)
Frame = +1
Query: 442 SLSILESKKEDEGWYFLS-LEENVSVQQFCLQLKIYEQVSRPEIKVLNSTQENGNCSLML 618
+L I + +KED Y + L++ + Q++ ++L++ + V +P IK+ + NC L L
Sbjct: 93 ALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKPVIKIEKIEDMDDNCYLKL 152
Query: 619 ACMVEKGDHVTYSWSQEGGVILPSPANCSH-LLYLTLGPQHADNVYICTANNPISNRSQT 795
+C++ G+ V Y+W G P P + +L TL P + Y C +N +S+++ T
Sbjct: 153 SCVI-PGESVNYTWY---GDKRPFPKELQNSVLETTLMPHNYSRCYTCQVSNSVSSKNGT 208
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.133 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,048,097
Number of extensions: 1266292
Number of successful extensions: 6589
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 6415
Number of HSP's successfully gapped: 14
Length of query: 342
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 239
Effective length of database: 14,901,872
Effective search space: 3561547408
Effective search space used: 3561547408
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014120
(1028 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 674 0.0
>Sscrofa_Chr04
|| Length = 143465943
Score = 674 bits (340), Expect = 0.0
Identities = 340/340 (100%)
Strand = Plus / Plus
Query: 208 ggtgagggttcgatgaattgcccaaaggtccttgggcggctgggaagcagcgtgctactg 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97772140 ggtgagggttcgatgaattgcccaaaggtccttgggcggctgggaagcagcgtgctactg 97772199
Query: 268 cccctgacatccgaggggataagaaagagcatgaacaagagcatccacattctggtctca 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97772200 cccctgacatccgaggggataagaaagagcatgaacaagagcatccacattctggtctca 97772259
Query: 328 atggcagaatcacccgtccacaacatcaagaagaaaatagtgtctctcgatctgccagaa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97772260 atggcagaatcacccgtccacaacatcaagaagaaaatagtgtctctcgatctgccagaa 97772319
Query: 388 gggagttctccacgctatctggaggatggctatgcgtttcacctggaaaacatgagcctg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97772320 gggagttctccacgctatctggaggatggctatgcgtttcacctggaaaacatgagcctg 97772379
Query: 448 agtatcctggaaagcaagaaagaggatgagggctggtactttttgagcctggaggaaaac 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97772380 agtatcctggaaagcaagaaagaggatgagggctggtactttttgagcctggaggaaaac 97772439
Query: 508 gtttctgtccagcaattttgcctgcagctgaagatctatg 547
||||||||||||||||||||||||||||||||||||||||
Sbjct: 97772440 gtttctgtccagcaattttgcctgcagctgaagatctatg 97772479
Score = 567 bits (286), Expect = e-159
Identities = 286/286 (100%)
Strand = Plus / Plus
Query: 547 gagcaggtctccaggccggaaattaaggtgttgaactccacgcaggagaatggaaactgc 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97774924 gagcaggtctccaggccggaaattaaggtgttgaactccacgcaggagaatggaaactgc 97774983
Query: 607 agcctgatgctggcctgtatggtggagaagggggaccatgtgacttacagctggagccag 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97774984 agcctgatgctggcctgtatggtggagaagggggaccatgtgacttacagctggagccag 97775043
Query: 667 gaggggggtgtcatcctgccaagccctgccaactgctcccacctcctctatctcaccctt 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97775044 gaggggggtgtcatcctgccaagccctgccaactgctcccacctcctctatctcaccctt 97775103
Query: 727 ggccctcagcatgccgacaatgtctacatctgcactgcgaacaaccccatcagcaaccgc 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97775104 ggccctcagcatgccgacaatgtctacatctgcactgcgaacaaccccatcagcaaccgc 97775163
Query: 787 tctcagaccttcatcccgtggtccagatgtagccccagttcctcag 832
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97775164 tctcagaccttcatcccgtggtccagatgtagccccagttcctcag 97775209
Score = 424 bits (214), Expect = e-116
Identities = 217/218 (99%)
Strand = Plus / Plus
Query: 1 tcgttcctgatgcataaactagacagtagaggcagcacttgcctgacatggagctcactc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97762706 tcgttcctgatgcataaactagacagtagaggcagcacttgcctgacatggagctcactc 97762765
Query: 61 tgctgtggcgtctgtgagcagctgccagctcctcaccaggctgccctccctccctctcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97762766 tgctgtggcgtctgtgagcagctgccagctcctcaccaggctgccctccctccctctcct 97762825
Query: 121 cactggctgatggatcccaagaggaggctcttctccttgaacgtcctgctgcttctgtcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97762826 cactggctgatggatcccaagaggaggctcttctccttgaacgtcctgctgcttctgtcc 97762885
Query: 181 ctggcctttgagctgagctgcacaacgggtgagggttc 218
||||||||||||||||||||||||||||||||| ||||
Sbjct: 97762886 ctggcctttgagctgagctgcacaacgggtgagtgttc 97762923
Score = 196 bits (99), Expect = 2e-47
Identities = 104/106 (98%)
Strand = Plus / Plus
Query: 829 tcagaatcaagacaatggggactgtatgttgggctgctcctagggggcatcattggtgtc 888
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 97786521 tcagaatcaagacaatggggactgtatgttgggctgctcttagggggcatcattggtgtc 97786580
Query: 889 atcatgattctccaagtggtaatactcctgttgagaagangaggta 934
||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 97786581 atcatgattctccaagtggtaatactcctgttgagaagaagaggta 97786626
Score = 63.9 bits (32), Expect = 2e-07
Identities = 68/76 (89%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 930 aggtaaagccaccaat-atcacccaccaatggaagcaaaaaccct-actatctatgccca 987
||||||||||| |||| |||| | | ||||||||||||||| ||| ||||||||||||||
Sbjct: 97790626 aggtaaagccaacaattatcagcgagcaatggaagcaaaaagccttactatctatgccca 97790685
Query: 988 agt-cagaaaccaggt 1002
||| ||||||||||||
Sbjct: 97790686 agtccagaaaccaggt 97790701
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,256,726
Number of extensions: 299
Number of successful extensions: 299
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 299
Number of HSP's successfully gapped: 5
Length of query: 1028
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1007
Effective length of database: 2,808,413,156
Effective search space: 2828072048092
Effective search space used: 2828072048092
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)