Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014121
(1202 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001179111.1| mitochondrial ubiquitin ligase activator of ... 563 e-160
Alignment gi|XP_002685772.1| PREDICTED: mitochondrial ubiquitin ligase ac... 563 e-160
Alignment gi|NP_001068764.1| E3 ubiquitin-protein ligase LRSAM1 [Bos taur... 51 2e-06
>ref|NP_001179111.1| mitochondrial ubiquitin ligase activator of NFKB 1 [Bos taurus].
Length = 350
Score = 563 bits (1451), Expect = e-160
Identities = 284/353 (80%), Positives = 301/353 (85%), Gaps = 1/353 (0%)
Frame = +3
Query: 126 MESGGRPSLGQFILLGTSSVVTAVLYSVYRQKAQVAQELKGAKRIHLGEDLKSILSEAPG 305
MESGGRPSLGQFILLGTSSVVTA LYSVYRQKAQVAQELKGAKRIHLGEDLKSILSEAPG
Sbjct: 1 MESGGRPSLGQFILLGTSSVVTAFLYSVYRQKAQVAQELKGAKRIHLGEDLKSILSEAPG 60
Query: 306 KCVPYAVIEGAVRSVKETLNSQFVENCKGVIQRLTLQEHKMVWNRTTHLWNDCSKIIHQR 485
KCVPYAVIEGAVRSVKETLNSQFVENCKGVIQRLTLQEHKMVWNRTTHLWNDCSKIIHQR
Sbjct: 61 KCVPYAVIEGAVRSVKETLNSQFVENCKGVIQRLTLQEHKMVWNRTTHLWNDCSKIIHQR 120
Query: 486 TNTVPFDLVPHEDGVDVAVRVLKPLDSLDLGLETVYEKFHPSIQSFTDVIGHYISGERPK 665
TNTVPFDLVPHEDG VAVRVLKPLD++DLGLETVYE+FHPS SFTDV+GHY+SGERPK
Sbjct: 121 TNTVPFDLVPHEDGAGVAVRVLKPLDAVDLGLETVYERFHPSTPSFTDVVGHYLSGERPK 180
Query: 666 GIQETEEMLKVGATLTGVGELVLDNNAVRLQPPK-QGMQYYLSSQDFDSLLQRQESSVRL 842
G+QETEEMLKVGA LTGVGELVLD++ VRLQPPK GMQYYLSSQDFDSLLQRQESSVRL
Sbjct: 181 GVQETEEMLKVGAPLTGVGELVLDHSCVRLQPPKGPGMQYYLSSQDFDSLLQRQESSVRL 240
Query: 843 WKVLMLVFGFATCATLFFIXXXXXXXXXXXXXXXXXXXXXXXHEARLLSGAQPEDRESLK 1022
WKVL LVFGFA CA+LFF+ A EDRE K
Sbjct: 241 WKVLALVFGFAACASLFFL---LRKQYLRRRRERQRPEEEFRERACPEEDRPEEDREGPK 297
Query: 1023 SACVVCLSNFRSCVFLECGHVCSCAECYRALPEPKRCPIRRQAITRVIPLYTA 1181
ACVVCL+NFRSCVFLECGH+C+C ECYRALPEP+RCPI RQ I+RV+ LY +
Sbjct: 298 GACVVCLNNFRSCVFLECGHLCACTECYRALPEPRRCPICRQEISRVVRLYNS 350
>ref|XP_002685772.1| PREDICTED: mitochondrial ubiquitin ligase activator of NFKB 1-like
[Bos taurus].
Length = 350
Score = 563 bits (1451), Expect = e-160
Identities = 284/353 (80%), Positives = 301/353 (85%), Gaps = 1/353 (0%)
Frame = +3
Query: 126 MESGGRPSLGQFILLGTSSVVTAVLYSVYRQKAQVAQELKGAKRIHLGEDLKSILSEAPG 305
MESGGRPSLGQFILLGTSSVVTA LYSVYRQKAQVAQELKGAKRIHLGEDLKSILSEAPG
Sbjct: 1 MESGGRPSLGQFILLGTSSVVTAFLYSVYRQKAQVAQELKGAKRIHLGEDLKSILSEAPG 60
Query: 306 KCVPYAVIEGAVRSVKETLNSQFVENCKGVIQRLTLQEHKMVWNRTTHLWNDCSKIIHQR 485
KCVPYAVIEGAVRSVKETLNSQFVENCKGVIQRLTLQEHKMVWNRTTHLWNDCSKIIHQR
Sbjct: 61 KCVPYAVIEGAVRSVKETLNSQFVENCKGVIQRLTLQEHKMVWNRTTHLWNDCSKIIHQR 120
Query: 486 TNTVPFDLVPHEDGVDVAVRVLKPLDSLDLGLETVYEKFHPSIQSFTDVIGHYISGERPK 665
TNTVPFDLVPHEDG VAVRVLKPLD++DLGLETVYE+FHPS SFTDV+GHY+SGERPK
Sbjct: 121 TNTVPFDLVPHEDGAGVAVRVLKPLDAVDLGLETVYERFHPSTPSFTDVVGHYLSGERPK 180
Query: 666 GIQETEEMLKVGATLTGVGELVLDNNAVRLQPPK-QGMQYYLSSQDFDSLLQRQESSVRL 842
G+QETEEMLKVGA LTGVGELVLD++ VRLQPPK GMQYYLSSQDFDSLLQRQESSVRL
Sbjct: 181 GVQETEEMLKVGAPLTGVGELVLDHSCVRLQPPKGPGMQYYLSSQDFDSLLQRQESSVRL 240
Query: 843 WKVLMLVFGFATCATLFFIXXXXXXXXXXXXXXXXXXXXXXXHEARLLSGAQPEDRESLK 1022
WKVL LVFGFA CA+LFF+ A EDRE K
Sbjct: 241 WKVLALVFGFAACASLFFL---LRKQYLRRRRERQRPEEEFRERACPEEDRPEEDREGPK 297
Query: 1023 SACVVCLSNFRSCVFLECGHVCSCAECYRALPEPKRCPIRRQAITRVIPLYTA 1181
ACVVCL+NFRSCVFLECGH+C+C ECYRALPEP+RCPI RQ I+RV+ LY +
Sbjct: 298 GACVVCLNNFRSCVFLECGHLCACTECYRALPEPRRCPICRQEISRVVRLYNS 350
>ref|NP_001068764.1| E3 ubiquitin-protein ligase LRSAM1 [Bos taurus].
Length = 724
Score = 51.2 bits (121), Expect = 2e-06
Identities = 28/68 (41%), Positives = 35/68 (51%)
Frame = +3
Query: 972 EARLLSGAQPEDRESLKSACVVCLSNFRSCVFLECGHVCSCAECYRALPEPKRCPIRRQA 1151
EA S E E S CVVCL +FL CGHVC C C + L + CP+ RQ
Sbjct: 657 EAVRPSAPPAELLEVQTSECVVCLEREAQMIFLNCGHVCCCQPCSQPL---RTCPLCRQD 713
Query: 1152 ITRVIPLY 1175
IT+ + +Y
Sbjct: 714 ITQRLRIY 721
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,927,622
Number of extensions: 840041
Number of successful extensions: 3539
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3531
Number of HSP's successfully gapped: 3
Length of query: 400
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 296
Effective length of database: 14,240,222
Effective search space: 4215105712
Effective search space used: 4215105712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-014121
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014121
(1202 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_544520.2| PREDICTED: similar to CG1134-PA [Canis familiar... 621 e-178
Alignment gi|XP_862751.1| PREDICTED: similar to leucine rich repeat and s... 56 8e-08
Alignment gi|XP_548450.2| PREDICTED: similar to leucine rich repeat and s... 56 8e-08
Alignment gi|XP_867870.1| PREDICTED: similar to rififylin isoform 4 [Cani... 49 7e-06
>ref|XP_544520.2| PREDICTED: similar to CG1134-PA [Canis familiaris].
Length = 352
Score = 621 bits (1602), Expect = e-178
Identities = 313/352 (88%), Positives = 320/352 (90%)
Frame = +3
Query: 126 MESGGRPSLGQFILLGTSSVVTAVLYSVYRQKAQVAQELKGAKRIHLGEDLKSILSEAPG 305
MESGGRPSLGQFILLGTSSVVTAVLYSVYRQKAQVAQELKGAKRIHLGEDLKSILSEAPG
Sbjct: 1 MESGGRPSLGQFILLGTSSVVTAVLYSVYRQKAQVAQELKGAKRIHLGEDLKSILSEAPG 60
Query: 306 KCVPYAVIEGAVRSVKETLNSQFVENCKGVIQRLTLQEHKMVWNRTTHLWNDCSKIIHQR 485
KCVPYAVIEGAVRSVKETLNSQFVENCKGVIQRLTLQEHKMVWNRTTHLWND SKIIHQR
Sbjct: 61 KCVPYAVIEGAVRSVKETLNSQFVENCKGVIQRLTLQEHKMVWNRTTHLWNDYSKIIHQR 120
Query: 486 TNTVPFDLVPHEDGVDVAVRVLKPLDSLDLGLETVYEKFHPSIQSFTDVIGHYISGERPK 665
TNTVPFDLVPHEDGV VAVRVLKPLDS DLGLETVYEKFHPSIQSFTDVIGHYISGERPK
Sbjct: 121 TNTVPFDLVPHEDGVGVAVRVLKPLDSQDLGLETVYEKFHPSIQSFTDVIGHYISGERPK 180
Query: 666 GIQETEEMLKVGATLTGVGELVLDNNAVRLQPPKQGMQYYLSSQDFDSLLQRQESSVRLW 845
GIQETEEMLKVGATLTGVGELVLDNN+VRLQPPKQGMQYYLSSQDFDSLLQRQESSVRLW
Sbjct: 181 GIQETEEMLKVGATLTGVGELVLDNNSVRLQPPKQGMQYYLSSQDFDSLLQRQESSVRLW 240
Query: 846 KVLMLVFGFATCATLFFIXXXXXXXXXXXXXXXXXXXXXXXHEARLLSGAQPEDRESLKS 1025
KVL LVFGFATCA LFFI HEA+LLS A+PEDRESLKS
Sbjct: 241 KVLTLVFGFATCAALFFILRKHYLQRQERQRLRQMEKEFQEHEAQLLSRAKPEDRESLKS 300
Query: 1026 ACVVCLSNFRSCVFLECGHVCSCAECYRALPEPKRCPIRRQAITRVIPLYTA 1181
ACVVCL++F+SCVFLECGHVCSCAECYRALPEPKRCPI RQ ITRVIPLY +
Sbjct: 301 ACVVCLNSFKSCVFLECGHVCSCAECYRALPEPKRCPICRQEITRVIPLYNS 352
>ref|XP_862751.1| PREDICTED: similar to leucine rich repeat and sterile alpha motif
containing 1 isoform 2 [Canis familiaris].
Length = 701
Score = 55.8 bits (133), Expect = 8e-08
Identities = 26/61 (42%), Positives = 35/61 (57%)
Frame = +3
Query: 993 AQPEDRESLKSACVVCLSNFRSCVFLECGHVCSCAECYRALPEPKRCPIRRQAITRVIPL 1172
A P + E S CVVCL +FL CGHVC C +C + L + CP+ RQ IT+ + +
Sbjct: 641 APPAELEVQTSECVVCLEREAQMIFLNCGHVCCCQQCCQPL---RTCPLCRQEITQRLRI 697
Query: 1173 Y 1175
Y
Sbjct: 698 Y 698
>ref|XP_548450.2| PREDICTED: similar to leucine rich repeat and sterile alpha motif
containing 1 isoform 1 [Canis familiaris].
Length = 728
Score = 55.8 bits (133), Expect = 8e-08
Identities = 26/61 (42%), Positives = 35/61 (57%)
Frame = +3
Query: 993 AQPEDRESLKSACVVCLSNFRSCVFLECGHVCSCAECYRALPEPKRCPIRRQAITRVIPL 1172
A P + E S CVVCL +FL CGHVC C +C + L + CP+ RQ IT+ + +
Sbjct: 668 APPAELEVQTSECVVCLEREAQMIFLNCGHVCCCQQCCQPL---RTCPLCRQEITQRLRI 724
Query: 1173 Y 1175
Y
Sbjct: 725 Y 725
>ref|XP_867870.1| PREDICTED: similar to rififylin isoform 4 [Canis familiaris].
Length = 335
Score = 49.3 bits (116), Expect = 7e-06
Identities = 24/65 (36%), Positives = 38/65 (58%)
Frame = +3
Query: 981 LLSGAQPEDRESLKSACVVCLSNFRSCVFLECGHVCSCAECYRALPEPKRCPIRRQAITR 1160
LL GA P E ++ C +C+ + CV LECGH+ +C +C + + E CPI RQ + R
Sbjct: 274 LLRGAVPPGLE--ENLCRICMDSPIDCVLLECGHMVTCTKCGKRMNE---CPICRQYVIR 328
Query: 1161 VIPLY 1175
+ ++
Sbjct: 329 AVHVF 333
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,453,392
Number of extensions: 865224
Number of successful extensions: 3569
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3565
Number of HSP's successfully gapped: 4
Length of query: 400
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 295
Effective length of database: 15,374,224
Effective search space: 4535396080
Effective search space used: 4535396080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014121
(1202 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003356224.1| PREDICTED: mitochondrial ubiquitin ligase ac... 648 0.0
>ref|XP_003356224.1| PREDICTED: mitochondrial ubiquitin ligase activator of NFKB 1 [Sus
scrofa].
Length = 352
Score = 648 bits (1672), Expect = 0.0
Identities = 326/352 (92%), Positives = 327/352 (92%)
Frame = +3
Query: 126 MESGGRPSLGQFILLGTSSVVTAVLYSVYRQKAQVAQELKGAKRIHLGEDLKSILSEAPG 305
MESGGRPSLGQFILLGTSSVVTAVLYSVYRQKAQVAQELKGAKRIHLGEDLKSILSEAPG
Sbjct: 1 MESGGRPSLGQFILLGTSSVVTAVLYSVYRQKAQVAQELKGAKRIHLGEDLKSILSEAPG 60
Query: 306 KCVPYAVIEGAVRSVKETLNSQFVENCKGVIQRLTLQEHKMVWNRTTHLWNDCSKIIHQR 485
KCVPYAVIEGAVRSVKETLNSQFVENCKGVIQRLTLQEHKMVWNRTTHLWNDCSKIIHQR
Sbjct: 61 KCVPYAVIEGAVRSVKETLNSQFVENCKGVIQRLTLQEHKMVWNRTTHLWNDCSKIIHQR 120
Query: 486 TNTVPFDLVPHEDGVDVAVRVLKPLDSLDLGLETVYEKFHPSIQSFTDVIGHYISGERPK 665
TNTVPFDLVPHEDGVDVAVRVLKPLDSLDLGLETVYEKFHPSIQSFTDVIGHYISGERPK
Sbjct: 121 TNTVPFDLVPHEDGVDVAVRVLKPLDSLDLGLETVYEKFHPSIQSFTDVIGHYISGERPK 180
Query: 666 GIQETEEMLKVGATLTGVGELVLDNNAVRLQPPKQGMQYYLSSQDFDSLLQRQESSVRLW 845
GIQETEEMLKVGATLTGVGELVLDNNAVRLQPPKQGMQYYLSSQDFDSLLQRQESSVRLW
Sbjct: 181 GIQETEEMLKVGATLTGVGELVLDNNAVRLQPPKQGMQYYLSSQDFDSLLQRQESSVRLW 240
Query: 846 KVLMLVFGFATCATLFFIXXXXXXXXXXXXXXXXXXXXXXXHEARLLSGAQPEDRESLKS 1025
KVLMLVFGFATCATLFFI HEARLLSGAQPEDRESLKS
Sbjct: 241 KVLMLVFGFATCATLFFILRKQYLQRQERLRLKQLEEEFREHEARLLSGAQPEDRESLKS 300
Query: 1026 ACVVCLSNFRSCVFLECGHVCSCAECYRALPEPKRCPIRRQAITRVIPLYTA 1181
ACVVCLSNFRSCVFLECGHVCSCAECYRALPEPKRCPI RQAITRVIPLY +
Sbjct: 301 ACVVCLSNFRSCVFLECGHVCSCAECYRALPEPKRCPICRQAITRVIPLYNS 352
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,535,200
Number of extensions: 543014
Number of successful extensions: 2243
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2241
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 299
Effective length of database: 8,829,335
Effective search space: 2639971165
Effective search space used: 2639971165
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014121
(1202 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080965.2| mitochondrial ubiquitin ligase activator of NFK... 605 e-173
Alignment gi|NP_955006.1| E3 ubiquitin-protein ligase LRSAM1 [Mus musculu... 53 4e-07
>ref|NP_080965.2| mitochondrial ubiquitin ligase activator of NFKB 1 [Mus musculus].
Length = 352
Score = 605 bits (1559), Expect = e-173
Identities = 300/352 (85%), Positives = 315/352 (89%)
Frame = +3
Query: 126 MESGGRPSLGQFILLGTSSVVTAVLYSVYRQKAQVAQELKGAKRIHLGEDLKSILSEAPG 305
MESG RPSLGQ ILLGTSS+VTAVLYS+YRQKAQVAQELKGAK+IHLGEDLK ILSEAPG
Sbjct: 1 MESGSRPSLGQVILLGTSSMVTAVLYSIYRQKAQVAQELKGAKKIHLGEDLKGILSEAPG 60
Query: 306 KCVPYAVIEGAVRSVKETLNSQFVENCKGVIQRLTLQEHKMVWNRTTHLWNDCSKIIHQR 485
KCVPYAVIEGAVRSVKETLNSQFVENCKGVIQRL+LQEHKMVWNRTTHLWND SKIIHQR
Sbjct: 61 KCVPYAVIEGAVRSVKETLNSQFVENCKGVIQRLSLQEHKMVWNRTTHLWNDYSKIIHQR 120
Query: 486 TNTVPFDLVPHEDGVDVAVRVLKPLDSLDLGLETVYEKFHPSIQSFTDVIGHYISGERPK 665
TNTVPFDLVPHEDGV V+VRVLKPLDS+DLGLETVYEKFHPS+QSFTD IGHYISGERPK
Sbjct: 121 TNTVPFDLVPHEDGVAVSVRVLKPLDSVDLGLETVYEKFHPSVQSFTDAIGHYISGERPK 180
Query: 666 GIQETEEMLKVGATLTGVGELVLDNNAVRLQPPKQGMQYYLSSQDFDSLLQRQESSVRLW 845
GIQETEEMLKVGATLTG+GELVLDNNAVRLQPPKQGMQYYLSSQDFDSLL RQESSVRLW
Sbjct: 181 GIQETEEMLKVGATLTGIGELVLDNNAVRLQPPKQGMQYYLSSQDFDSLLHRQESSVRLW 240
Query: 846 KVLMLVFGFATCATLFFIXXXXXXXXXXXXXXXXXXXXXXXHEARLLSGAQPEDRESLKS 1025
K+L+LVFGFATCATLFFI HEA+LLS A PEDRESLKS
Sbjct: 241 KILVLVFGFATCATLFFILRKQYLHRQERLRQQQLQEEFLEHEAQLLSQASPEDRESLKS 300
Query: 1026 ACVVCLSNFRSCVFLECGHVCSCAECYRALPEPKRCPIRRQAITRVIPLYTA 1181
ACVVCLSNF+SCVFLECGHVCSC +CY ALPEPKRCPI R+ ITRVIPLY +
Sbjct: 301 ACVVCLSNFKSCVFLECGHVCSCRQCYLALPEPKRCPICRREITRVIPLYNS 352
>ref|NP_955006.1| E3 ubiquitin-protein ligase LRSAM1 [Mus musculus].
Length = 727
Score = 53.1 bits (126), Expect = 4e-07
Identities = 25/61 (40%), Positives = 35/61 (57%)
Frame = +3
Query: 993 AQPEDRESLKSACVVCLSNFRSCVFLECGHVCSCAECYRALPEPKRCPIRRQAITRVIPL 1172
A P + + S CVVCL VFL CGHVC C +C + L + CP+ RQ I++ + +
Sbjct: 667 APPAELDMPTSECVVCLEREAQMVFLTCGHVCCCQQCCQPL---RTCPLCRQEISQRLRI 723
Query: 1173 Y 1175
Y
Sbjct: 724 Y 724
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,123,770
Number of extensions: 704476
Number of successful extensions: 2826
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2817
Number of HSP's successfully gapped: 2
Length of query: 400
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 296
Effective length of database: 12,493,815
Effective search space: 3698169240
Effective search space used: 3698169240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014121
(1202 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_078820.2| mitochondrial ubiquitin ligase activator of NFK... 621 e-178
Alignment gi|NP_001177652.1| E3 ubiquitin-protein ligase LRSAM1 isoform 2... 54 4e-07
Alignment gi|NP_001005374.1| E3 ubiquitin-protein ligase LRSAM1 isoform 1... 54 4e-07
Alignment gi|NP_612370.3| E3 ubiquitin-protein ligase LRSAM1 isoform 1 [H... 54 4e-07
Alignment gi|NP_001005373.1| E3 ubiquitin-protein ligase LRSAM1 isoform 1... 54 4e-07
>ref|NP_078820.2| mitochondrial ubiquitin ligase activator of NFKB 1 [Homo sapiens].
Length = 352
Score = 621 bits (1602), Expect = e-178
Identities = 309/352 (87%), Positives = 322/352 (91%)
Frame = +3
Query: 126 MESGGRPSLGQFILLGTSSVVTAVLYSVYRQKAQVAQELKGAKRIHLGEDLKSILSEAPG 305
MESGGRPSL QFILLGT+SVVTA LYSVYRQKA+V+QELKGAK++HLGEDLKSILSEAPG
Sbjct: 1 MESGGRPSLCQFILLGTTSVVTAALYSVYRQKARVSQELKGAKKVHLGEDLKSILSEAPG 60
Query: 306 KCVPYAVIEGAVRSVKETLNSQFVENCKGVIQRLTLQEHKMVWNRTTHLWNDCSKIIHQR 485
KCVPYAVIEGAVRSVKETLNSQFVENCKGVIQRLTLQEHKMVWNRTTHLWNDCSKIIHQR
Sbjct: 61 KCVPYAVIEGAVRSVKETLNSQFVENCKGVIQRLTLQEHKMVWNRTTHLWNDCSKIIHQR 120
Query: 486 TNTVPFDLVPHEDGVDVAVRVLKPLDSLDLGLETVYEKFHPSIQSFTDVIGHYISGERPK 665
TNTVPFDLVPHEDGVDVAVRVLKPLDS+DLGLETVYEKFHPSIQSFTDVIGHYISGERPK
Sbjct: 121 TNTVPFDLVPHEDGVDVAVRVLKPLDSVDLGLETVYEKFHPSIQSFTDVIGHYISGERPK 180
Query: 666 GIQETEEMLKVGATLTGVGELVLDNNAVRLQPPKQGMQYYLSSQDFDSLLQRQESSVRLW 845
GIQETEEMLKVGATLTGVGELVLDNN+VRLQPPKQGMQYYLSSQDFDSLLQRQESSVRLW
Sbjct: 181 GIQETEEMLKVGATLTGVGELVLDNNSVRLQPPKQGMQYYLSSQDFDSLLQRQESSVRLW 240
Query: 846 KVLMLVFGFATCATLFFIXXXXXXXXXXXXXXXXXXXXXXXHEARLLSGAQPEDRESLKS 1025
KVL LVFGFATCATLFFI HEA+LLS A+PEDRESLKS
Sbjct: 241 KVLALVFGFATCATLFFILRKQYLQRQERLRLKQMQEEFQEHEAQLLSRAKPEDRESLKS 300
Query: 1026 ACVVCLSNFRSCVFLECGHVCSCAECYRALPEPKRCPIRRQAITRVIPLYTA 1181
ACVVCLS+F+SCVFLECGHVCSC ECYRALPEPK+CPI RQAITRVIPLY +
Sbjct: 301 ACVVCLSSFKSCVFLECGHVCSCTECYRALPEPKKCPICRQAITRVIPLYNS 352
>ref|NP_001177652.1| E3 ubiquitin-protein ligase LRSAM1 isoform 2 [Homo sapiens].
Length = 696
Score = 53.5 bits (127), Expect = 4e-07
Identities = 25/61 (40%), Positives = 34/61 (55%)
Frame = +3
Query: 993 AQPEDRESLKSACVVCLSNFRSCVFLECGHVCSCAECYRALPEPKRCPIRRQAITRVIPL 1172
A P + E S CVVCL +FL CGHVC C +C + L + CP+ RQ I + + +
Sbjct: 636 APPAELEVQASECVVCLEREAQMIFLNCGHVCCCQQCCQPL---RTCPLCRQDIAQRLRI 692
Query: 1173 Y 1175
Y
Sbjct: 693 Y 693
>ref|NP_001005374.1| E3 ubiquitin-protein ligase LRSAM1 isoform 1 [Homo sapiens].
Length = 723
Score = 53.5 bits (127), Expect = 4e-07
Identities = 25/61 (40%), Positives = 34/61 (55%)
Frame = +3
Query: 993 AQPEDRESLKSACVVCLSNFRSCVFLECGHVCSCAECYRALPEPKRCPIRRQAITRVIPL 1172
A P + E S CVVCL +FL CGHVC C +C + L + CP+ RQ I + + +
Sbjct: 663 APPAELEVQASECVVCLEREAQMIFLNCGHVCCCQQCCQPL---RTCPLCRQDIAQRLRI 719
Query: 1173 Y 1175
Y
Sbjct: 720 Y 720
>ref|NP_612370.3| E3 ubiquitin-protein ligase LRSAM1 isoform 1 [Homo sapiens].
Length = 723
Score = 53.5 bits (127), Expect = 4e-07
Identities = 25/61 (40%), Positives = 34/61 (55%)
Frame = +3
Query: 993 AQPEDRESLKSACVVCLSNFRSCVFLECGHVCSCAECYRALPEPKRCPIRRQAITRVIPL 1172
A P + E S CVVCL +FL CGHVC C +C + L + CP+ RQ I + + +
Sbjct: 663 APPAELEVQASECVVCLEREAQMIFLNCGHVCCCQQCCQPL---RTCPLCRQDIAQRLRI 719
Query: 1173 Y 1175
Y
Sbjct: 720 Y 720
>ref|NP_001005373.1| E3 ubiquitin-protein ligase LRSAM1 isoform 1 [Homo sapiens].
Length = 723
Score = 53.5 bits (127), Expect = 4e-07
Identities = 25/61 (40%), Positives = 34/61 (55%)
Frame = +3
Query: 993 AQPEDRESLKSACVVCLSNFRSCVFLECGHVCSCAECYRALPEPKRCPIRRQAITRVIPL 1172
A P + E S CVVCL +FL CGHVC C +C + L + CP+ RQ I + + +
Sbjct: 663 APPAELEVQASECVVCLEREAQMIFLNCGHVCCCQQCCQPL---RTCPLCRQDIAQRLRI 719
Query: 1173 Y 1175
Y
Sbjct: 720 Y 720
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,667,985
Number of extensions: 843859
Number of successful extensions: 3568
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3566
Number of HSP's successfully gapped: 5
Length of query: 400
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 295
Effective length of database: 14,835,944
Effective search space: 4376603480
Effective search space used: 4376603480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014121
(1202 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 1441 0.0
>Sscrofa_Chr06
|| Length = 157765593
Score = 1441 bits (727), Expect = 0.0
Identities = 747/751 (99%), Gaps = 2/751 (0%)
Strand = Plus / Minus
Query: 454 ggaatgactgttccaagatcattcaccaaaggaccaacacggtgccctttgacctggtgc 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72942708 ggaatgactgttccaagatcattcaccaaaggaccaacacggtgccctttgacctggtgc 72942649
Query: 514 cgcacgaggacggcgtggacgtggctgtgcgggtgctgaagcccctggactcgctggatc 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72942648 cgcacgaggacggcgtggacgtggctgtgcgggtgctgaagcccctggactcgctggatc 72942589
Query: 574 tgggcctggagaccgtgtatgagaagttccacccctccatccagtccttcacggacgtga 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72942588 tgggcctggagaccgtgtatgagaagttccacccctccatccagtccttcacggacgtga 72942529
Query: 634 tcggccactacatcagcggggagcggcccaaaggcatccaggagacggaggagatgctga 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72942528 tcggccactacatcagcggggagcggcccaaaggcatccaggagacggaggagatgctga 72942469
Query: 694 aggtgggggccaccctcacgggggtgggcgagctggtcctggacaacaacgccgtccgcc 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72942468 aggtgggggccaccctcacgggggtgggcgagctggtcctggacaacaacgccgtccgcc 72942409
Query: 754 tgcagccccccaagcagggcatgcagtactatctgagcagccaggacttcgacagcctgc 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72942408 tgcagccccccaagcagggcatgcagtactatctgagcagccaggacttcgacagcctgc 72942349
Query: 814 tgcagaggcaggagtcgagcgtcaggctctggaaggtcctgatgctggtgtttggctttg 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72942348 tgcagaggcaggagtcgagcgtcaggctctggaaggtcctgatgctggtgtttggctttg 72942289
Query: 874 ccacgtgcgccaccctcttcttcatcctccggaagcagtatctgcagcggcaggagcgac 933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72942288 ccacgtgcgccaccctcttcttcatcctccggaagcagtatctgcagcggcaggagcgac 72942229
Query: 934 tgcgcctcaagcagctggaggaggagttccgcgagcacgaggcgcgtctgctgagcggcg 993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72942228 tgcgcctcaagcagctggaggaggagttccgcgagcacgaggcgcgtctgctgagcggcg 72942169
Query: 994 cgcagcccgaggaccgggagagcctcaagagcgcctgcgtcgtgtgcctgagcaacttcc 1053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72942168 cgcagcccgaggaccgggagagcctcaagagcgcctgcgtcgtgtgcctgagcaacttcc 72942109
Query: 1054 gctcttgcgtctttctggagtgcgggcacgtatgctcttgcgccgagtgctaccgcgccc 1113
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72942108 gctcttgcgtcttcctggagtgcgggcacgtatgctcttgcgccgagtgctaccgcgccc 72942049
Query: 1114 tgccggagcccaagaggtgccccatccgccgccaggcgatcacccgcgtgatccccctgt 1173
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 72942048 tgccggagcccaagaggtgccccatctgccgccaggcgatcacccgcgtgatccccctgt 72941989
Query: 1174 ac-acagctaaggg-cttgaagccccgcggg 1202
|| ||||||||||| ||||||||||||||||
Sbjct: 72941988 acaacagctaagggccttgaagccccgcggg 72941958
Score = 337 bits (170), Expect = 8e-90
Identities = 170/170 (100%)
Strand = Plus / Minus
Query: 77 agccagccctccgcggcgtccccgtctgcacccagggctcggctcagccatggagagcgg 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72951879 agccagccctccgcggcgtccccgtctgcacccagggctcggctcagccatggagagcgg 72951820
Query: 137 ggggcggccctctctaggccagttcatcctcctaggcaccagctctgtcgtcaccgccgt 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72951819 ggggcggccctctctaggccagttcatcctcctaggcaccagctctgtcgtcaccgccgt 72951760
Query: 197 cctgtactccgtgtaccggcagaaggcccaggtcgcccaagagctcaagg 246
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72951759 cctgtactccgtgtaccggcagaaggcccaggtcgcccaagagctcaagg 72951710
Score = 246 bits (124), Expect = 2e-62
Identities = 124/124 (100%)
Strand = Plus / Minus
Query: 332 aggagctgttcgatctgttaaagaaacacttaacagccagtttgtagaaaattgcaaggg 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72945735 aggagctgttcgatctgttaaagaaacacttaacagccagtttgtagaaaattgcaaggg 72945676
Query: 392 ggtgattcagcggctgacgcttcaggagcacaagatggtgtggaatcggacaacccacct 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72945675 ggtgattcagcggctgacgcttcaggagcacaagatggtgtggaatcggacaacccacct 72945616
Query: 452 ttgg 455
||||
Sbjct: 72945615 ttgg 72945612
Score = 180 bits (91), Expect = 1e-42
Identities = 91/91 (100%)
Strand = Plus / Minus
Query: 244 agggagctaaaagaatccacttgggtgaagacctaaagagtattctttcagaagctccag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72946231 agggagctaaaagaatccacttgggtgaagacctaaagagtattctttcagaagctccag 72946172
Query: 304 gaaaatgtgtgccttatgctgttatcgaagg 334
|||||||||||||||||||||||||||||||
Sbjct: 72946171 gaaaatgtgtgccttatgctgttatcgaagg 72946141
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,770,955
Number of extensions: 167
Number of successful extensions: 167
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 4
Length of query: 1202
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1181
Effective length of database: 2,808,413,156
Effective search space: 3316735937236
Effective search space used: 3316735937236
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)