Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014130
(1105 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_991348.1| transmembrane protein 176A [Bos taurus]. 134 2e-31
>ref|NP_991348.1| transmembrane protein 176A [Bos taurus].
Length = 241
Score = 134 bits (336), Expect = 2e-31
Identities = 83/241 (34%), Positives = 98/241 (40%), Gaps = 1/241 (0%)
Frame = +1
Query: 115 MGTSDSGEAGPGAPQPNRIEVHVHQEXXXXXXXXXXXXXXXXXXX-QPRTASQTLGSSRL 291
M T D GEA P APQP I+VH H E +PR S+ LG RL
Sbjct: 1 METVDCGEAAPRAPQPASIQVHFHHESGLAKLLLGGCSLLQPLLLPRPRATSRALGRHRL 60
Query: 292 LVASWXXXXXXXXXXXXXXXXXYISRSTTLRESGAPIWTXXXXXXXXXXXFVYEKRGGIY 471
L SW YI STTLR SGAPIWT F+YEKRGGIY
Sbjct: 61 LATSWVMQIVLGLLSGVLGGFLYIFSSTTLRNSGAPIWTGAVAVLAGAVAFIYEKRGGIY 120
Query: 472 WXXXXXXXXXXXXXXXXXXXXXXXXXXXQYHYSFYDNICDVSXXXXXXXXXXXXNPDVSR 651
W +YH+ FY IC+VS +PD+ R
Sbjct: 121 WALLRTLLALAAFSTATAATIIGAGRFYEYHFIFYKGICNVS-PSWRPTGAPTLSPDLER 179
Query: 652 QQLCILYLDKLKAMFTGXXXXXXXXXXXXXXXXXXXXXXCCWRRYQQKEKGDLLLEDTAA 831
Q C Y++ LKA+F CCWRRY++KEK DL LE+T
Sbjct: 180 LQQCTAYVNMLKALFISINAMLLGVWVLLLLASLLPLCLCCWRRYRRKEKRDLPLEETVR 239
Query: 832 S 834
S
Sbjct: 240 S 240
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,761,207
Number of extensions: 1376820
Number of successful extensions: 7129
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7096
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 264
Effective length of database: 14,240,222
Effective search space: 3759418608
Effective search space used: 3759418608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-014130
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014130
(1105 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532758.1| PREDICTED: similar to hepatocellular carcinoma-... 88 2e-17
>ref|XP_532758.1| PREDICTED: similar to hepatocellular carcinoma-associated antigen
112 [Canis familiaris].
Length = 241
Score = 87.8 bits (216), Expect = 2e-17
Identities = 64/231 (27%), Positives = 80/231 (34%), Gaps = 3/231 (1%)
Frame = +1
Query: 115 MGTSDSGEAGPGAPQPNRIEVHVHQEXXXXXXXXXXXXXXXXXXXQPRTASQTLGSSRLL 294
M T DSGE PGAPQP I VH+HQE P QT SRLL
Sbjct: 1 METVDSGEVAPGAPQPMHINVHIHQESALAKLLTSGCSLLRSHF--PGATFQTWSRSRLL 58
Query: 295 VASWXXXXXXXXXXXXXXXXXYISRSTTLRESGAPIWTXXXXXXXXXXXFVYEKRGGIYW 474
+ASW YI +TL SGA IWT F+++KRGGI W
Sbjct: 59 LASWVIQIVLGVSSGVLGGFLYIFYCSTLCSSGAAIWTGAVASLAGAVAFIHQKRGGICW 118
Query: 475 XXXXXXXXXXXXXXXXXXXXXXXXXXXQYHYSFYDNICDVSXXXXXXXXXXXXNP---DV 645
++ + D ICDVS P +
Sbjct: 119 ALLRILLALAAFSTATAAIVIGASNFYRHRFYLRDFICDVSSKAWSWAPLSPSTPSPEEA 178
Query: 646 SRQQLCILYLDKLKAMFTGXXXXXXXXXXXXXXXXXXXXXXCCWRRYQQKE 798
+R LC+ YL L+A+F CW R + K+
Sbjct: 179 TRLHLCLSYLSMLEALFISFQVMLLGIWVLLLLASLVPLCLFCWSRSRHKK 229
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,463,063
Number of extensions: 1404590
Number of successful extensions: 7302
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7280
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 264
Effective length of database: 15,407,560
Effective search space: 4067595840
Effective search space used: 4067595840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014130
(1105 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134631.2| PREDICTED: transmembrane protein 176A-like [... 190 1e-48
>ref|XP_003134631.2| PREDICTED: transmembrane protein 176A-like [Sus scrofa].
Length = 203
Score = 190 bits (483), Expect = 1e-48
Identities = 105/193 (54%), Positives = 107/193 (55%)
Frame = +1
Query: 115 MGTSDSGEAGPGAPQPNRIEVHVHQEXXXXXXXXXXXXXXXXXXXQPRTASQTLGSSRLL 294
MGTSDSGEAGPGAPQPNRIEVHVHQE QPRTASQTLGSSRLL
Sbjct: 1 MGTSDSGEAGPGAPQPNRIEVHVHQESGLAKLLLSGCSLLQPLVLQPRTASQTLGSSRLL 60
Query: 295 VASWXXXXXXXXXXXXXXXXXYISRSTTLRESGAPIWTXXXXXXXXXXXFVYEKRGGIYW 474
VASW YISRSTTLRESGAPIWT FVYEKRGGIYW
Sbjct: 61 VASWVVQIVLGVLSGVLGGFLYISRSTTLRESGAPIWTGAVAVLAGVVAFVYEKRGGIYW 120
Query: 475 XXXXXXXXXXXXXXXXXXXXXXXXXXXQYHYSFYDNICDVSXXXXXXXXXXXXNPDVSRQ 654
QYHYSFYDNICDVS NPDVSRQ
Sbjct: 121 ALLRTALALTAFSTATAAIVIAAANFNQYHYSFYDNICDVSPPWGPTWPPGTPNPDVSRQ 180
Query: 655 QLCILYLDKLKAM 693
QLCILYLDKLK++
Sbjct: 181 QLCILYLDKLKSI 193
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,300,062
Number of extensions: 889155
Number of successful extensions: 4485
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4464
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 268
Effective length of database: 8,854,232
Effective search space: 2372934176
Effective search space used: 2372934176
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014130
(1105 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001091741.1| transmembrane protein 176A [Mus musculus]. 69 5e-12
Alignment gi|NP_079602.4| transmembrane protein 176A [Mus musculus]. 69 5e-12
>ref|NP_001091741.1| transmembrane protein 176A [Mus musculus].
Length = 244
Score = 69.3 bits (168), Expect = 5e-12
Identities = 54/200 (27%), Positives = 70/200 (35%), Gaps = 3/200 (1%)
Frame = +1
Query: 103 VSAGMGTSDSGEAGPGAPQPNRIEVHVHQEXXXXXXXXXXXXXXXXXXXQPRTAS-QTLG 279
+S M T+ G+ P APQP I+VH+HQE P +AS Q+ G
Sbjct: 1 MSTDMETAVVGKVDPEAPQPTHIDVHIHQESALAKLLLAGCSLLRI----PASASTQSQG 56
Query: 280 SSRLLVASWXXXXXXXXXXXXXXXXXYISRSTTLRESGAPIWTXXXXXXXXXXXFVYEKR 459
SSR+LVASW YI + GAP WT F+++KR
Sbjct: 57 SSRVLVASWVVQTVLGALSVVLGGTLYIGHYLAMYSEGAPFWTGIVAMLAGAVAFLHKKR 116
Query: 460 GGIYWXXXXXXXXXXXXXXXXXXXXXXXXXXXQYHYSFYDNIC--DVSXXXXXXXXXXXX 633
GG W Y Y D++C D S
Sbjct: 117 GGTCWALMRTLLVLASFCTAVAAIVIGSRELNFYWYFLGDDVCQRDSSYGWSTMPRTTPV 176
Query: 634 NPDVSRQQLCILYLDKLKAM 693
+ R LCI Y LK +
Sbjct: 177 PEEADRIALCIYYTSMLKTL 196
>ref|NP_079602.4| transmembrane protein 176A [Mus musculus].
Length = 244
Score = 69.3 bits (168), Expect = 5e-12
Identities = 54/200 (27%), Positives = 70/200 (35%), Gaps = 3/200 (1%)
Frame = +1
Query: 103 VSAGMGTSDSGEAGPGAPQPNRIEVHVHQEXXXXXXXXXXXXXXXXXXXQPRTAS-QTLG 279
+S M T+ G+ P APQP I+VH+HQE P +AS Q+ G
Sbjct: 1 MSTDMETAVVGKVDPEAPQPTHIDVHIHQESALAKLLLAGCSLLRI----PASASTQSQG 56
Query: 280 SSRLLVASWXXXXXXXXXXXXXXXXXYISRSTTLRESGAPIWTXXXXXXXXXXXFVYEKR 459
SSR+LVASW YI + GAP WT F+++KR
Sbjct: 57 SSRVLVASWVVQTVLGALSVVLGGTLYIGHYLAMYSEGAPFWTGIVAMLAGAVAFLHKKR 116
Query: 460 GGIYWXXXXXXXXXXXXXXXXXXXXXXXXXXXQYHYSFYDNIC--DVSXXXXXXXXXXXX 633
GG W Y Y D++C D S
Sbjct: 117 GGTCWALMRTLLVLASFCTAVAAIVIGSRELNFYWYFLGDDVCQRDSSYGWSTMPRTTPV 176
Query: 634 NPDVSRQQLCILYLDKLKAM 693
+ R LCI Y LK +
Sbjct: 177 PEEADRIALCIYYTSMLKTL 196
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,396,696
Number of extensions: 1127085
Number of successful extensions: 5429
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5400
Number of HSP's successfully gapped: 2
Length of query: 368
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 265
Effective length of database: 12,523,851
Effective search space: 3318820515
Effective search space used: 3318820515
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014130
(1105 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060957.2| transmembrane protein 176A [Homo sapiens]. 97 3e-20
>ref|NP_060957.2| transmembrane protein 176A [Homo sapiens].
Length = 235
Score = 96.7 bits (239), Expect = 3e-20
Identities = 71/232 (30%), Positives = 88/232 (37%), Gaps = 1/232 (0%)
Frame = +1
Query: 115 MGTSDSGEAGPGAPQPNRIEVHVHQEXXXXXXXXXXXXXXXXXXXQPRTASQTLGSSRLL 294
MGT+DS E P APQ I+VH+HQE +PR A+Q GSSRLL
Sbjct: 1 MGTADSDEMAPEAPQHTHIDVHIHQESALAKLLLTCCSAL-----RPR-ATQARGSSRLL 54
Query: 295 VASWXXXXXXXXXXXXXXXXXYISRSTTLRESGAPIWTXXXXXXXXXXXFVYEKRGGIYW 474
VASW YI T L SGA IWT F+YEKRGG YW
Sbjct: 55 VASWVMQIVLGILSAVLGGFFYIRDYTLLVTSGAAIWTGAVAVLAGAAAFIYEKRGGTYW 114
Query: 475 XXXXXXXXXXXXXXXXXXXXXXXXXXXQYHYSFYDNICDVSXXXXXXXXXXXXNP-DVSR 651
+Y YS+Y++ C +S +P +V R
Sbjct: 115 -ALLRTLLTLAAFSTAIAALKLWNEDFRYGYSYYNSACRISSSSDWNTPAPTQSPEEVRR 173
Query: 652 QQLCILYLDKLKAMFTGXXXXXXXXXXXXXXXXXXXXXXCCWRRYQQKEKGD 807
LC ++D LKA+F CWR + K K D
Sbjct: 174 LHLCTSFMDMLKALFRTLQAMLLGVWILLLLASLTPLWLYCWRMFPTKGKRD 225
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,528,251
Number of extensions: 1368378
Number of successful extensions: 6824
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6783
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 264
Effective length of database: 14,868,908
Effective search space: 3925391712
Effective search space used: 3925391712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014130
(1105 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr18 426 e-116
>Sscrofa_Chr18
|| Length = 61220071
Score = 426 bits (215), Expect = e-116
Identities = 215/215 (100%)
Strand = Plus / Minus
Query: 474 ggccctgctaaggaccgcgctcgcgctgacagctttctcaacggccactgccgccatcgt 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6647970 ggccctgctaaggaccgcgctcgcgctgacagctttctcaacggccactgccgccatcgt 6647911
Query: 534 cattgcagctgcaaatttcaaccagtaccactattctttttatgacaatatctgtgatgt 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6647910 cattgcagctgcaaatttcaaccagtaccactattctttttatgacaatatctgtgatgt 6647851
Query: 594 ctctccaccctggggtcccacctggccccccggcaccccaaatccagatgtcagcagaca 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6647850 ctctccaccctggggtcccacctggccccccggcaccccaaatccagatgtcagcagaca 6647791
Query: 654 acagctgtgcatcttgtacctggacaagctgaagg 688
|||||||||||||||||||||||||||||||||||
Sbjct: 6647790 acagctgtgcatcttgtacctggacaagctgaagg 6647756
Score = 422 bits (213), Expect = e-115
Identities = 213/213 (100%)
Strand = Plus / Minus
Query: 97 aggagcgtgtctgcaggcatgggaacctcagacagtggggaggcggggcctggggctccc 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6650022 aggagcgtgtctgcaggcatgggaacctcagacagtggggaggcggggcctggggctccc 6649963
Query: 157 cagcccaaccgcatcgaggtgcacgtccaccaggagtcaggtctggccaagctcctgctg 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6649962 cagcccaaccgcatcgaggtgcacgtccaccaggagtcaggtctggccaagctcctgctg 6649903
Query: 217 agtgggtgctccctgctgcagcccctggtcctgcagccccgcactgcgtcccagaccctg 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6649902 agtgggtgctccctgctgcagcccctggtcctgcagccccgcactgcgtcccagaccctg 6649843
Query: 277 ggcagcagccggctgctggtggcctcctgggtg 309
|||||||||||||||||||||||||||||||||
Sbjct: 6649842 ggcagcagccggctgctggtggcctcctgggtg 6649810
Score = 224 bits (113), Expect = 8e-56
Identities = 113/113 (100%)
Strand = Plus / Minus
Query: 306 ggtggtgcagatcgtgctgggggtgttgagtggggtcctgggaggcttcctctacatctc 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6649344 ggtggtgcagatcgtgctgggggtgttgagtggggtcctgggaggcttcctctacatctc 6649285
Query: 366 ccgctccaccaccctgcgggaatcgggagctcccatctggaccggggctgtgg 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6649284 ccgctccaccaccctgcgggaatcgggagctcccatctggaccggggctgtgg 6649232
Score = 224 bits (113), Expect = 8e-56
Identities = 113/113 (100%)
Strand = Plus / Minus
Query: 686 aggccatgttcacaggccttcaagtcatactattaggtgtctgggttctgctgctcctgg 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6699547 aggccatgttcacaggccttcaagtcatactattaggtgtctgggttctgctgctcctgg 6699488
Query: 746 cgtctctggtccccctgtgtctgtgctgctggaggaggtaccaacagaaggag 798
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6699487 cgtctctggtccccctgtgtctgtgctgctggaggaggtaccaacagaaggag 6699435
Score = 196 bits (99), Expect = 2e-47
Identities = 99/99 (100%)
Strand = Plus / Minus
Query: 1 ttctgcccagttctctgccctagtggctttccccagccctgcatcacatccagactgctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6650853 ttctgcccagttctctgccctagtggctttccccagccctgcatcacatccagactgctg 6650794
Query: 61 gccttcggtccccggtccccggtccccgaagagaacagg 99
|||||||||||||||||||||||||||||||||||||||
Sbjct: 6650793 gccttcggtccccggtccccggtccccgaagagaacagg 6650755
Score = 117 bits (59), Expect = 1e-23
Identities = 59/59 (100%)
Strand = Plus / Minus
Query: 417 ggctgtgctggctggagttgtcgccttcgtgtatgagaaacgcggtggcatctactggg 475
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6648195 ggctgtgctggctggagttgtcgccttcgtgtatgagaaacgcggtggcatctactggg 6648137
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,322,257
Number of extensions: 300
Number of successful extensions: 300
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 300
Number of HSP's successfully gapped: 6
Length of query: 1105
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1084
Effective length of database: 2,808,413,156
Effective search space: 3044319861104
Effective search space used: 3044319861104
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)