Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014137
(932 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,573,170
Number of extensions: 1130650
Number of successful extensions: 4782
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 4723
Number of HSP's successfully gapped: 0
Length of query: 310
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 207
Effective length of database: 15,440,896
Effective search space: 3196265472
Effective search space used: 3196265472
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-014137
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014137
(932 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002688492.1| PREDICTED: hypothetical protein [Bos taurus]. 482 e-136
Alignment gi|XP_877410.2| PREDICTED: hypothetical protein isoform 2 [Bos ... 482 e-136
>ref|XP_002688492.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 643
Score = 482 bits (1240), Expect = e-136
Identities = 222/245 (90%), Positives = 233/245 (95%)
Frame = +1
Query: 196 PHLVRVDAARALGPLRPFWRSTGFCPPLPHSQAHRYDLSWDQQLNLAYVGAVPHGGIQQV 375
PHLVRVDAARAL PLRPFWRSTGFCPPLPH QA RYDLSWDQQLNLAYVGAVPHGGI+QV
Sbjct: 28 PHLVRVDAARALRPLRPFWRSTGFCPPLPHGQADRYDLSWDQQLNLAYVGAVPHGGIEQV 87
Query: 376 RAHWLLGLVTARRSAGQGLSYNFTHLDRYLDLLRENQLLPGFELMGSPSGHFTDFEDKQQ 555
R HWLL L+TAR GQGL YNFTHLDRYLDLLRENQL+PGFELMGSPSG FT+FEDKQQ
Sbjct: 88 RTHWLLDLITARGLVGQGLRYNFTHLDRYLDLLRENQLVPGFELMGSPSGRFTNFEDKQQ 147
Query: 556 VFEWRNLVSLLARRYVGRYGLKHVSKWNFETWNEPDHHDFDNVSMTLQGFLNYYDACSEG 735
VFEWRNLVSLLARRY+GRYGL+HVSKWNFETWNEPDHHDFDNVSMTLQGFLNYYDACSEG
Sbjct: 148 VFEWRNLVSLLARRYIGRYGLEHVSKWNFETWNEPDHHDFDNVSMTLQGFLNYYDACSEG 207
Query: 736 LRAASPALRLGGPGDSFHDPPRSPLCWGLLAHCHNGTNFFTGEVGVRLDFIALHKKGAGS 915
LRAASPALRLGGPGD+FH PPRSPLCWGLL HC+NG+NFFTGEVGVRLD+IALHKKGAGS
Sbjct: 208 LRAASPALRLGGPGDAFHAPPRSPLCWGLLGHCNNGSNFFTGEVGVRLDYIALHKKGAGS 267
Query: 916 SIYIL 930
SI+IL
Sbjct: 268 SIFIL 272
>ref|XP_877410.2| PREDICTED: hypothetical protein isoform 2 [Bos taurus].
Length = 643
Score = 482 bits (1240), Expect = e-136
Identities = 222/245 (90%), Positives = 233/245 (95%)
Frame = +1
Query: 196 PHLVRVDAARALGPLRPFWRSTGFCPPLPHSQAHRYDLSWDQQLNLAYVGAVPHGGIQQV 375
PHLVRVDAARAL PLRPFWRSTGFCPPLPH QA RYDLSWDQQLNLAYVGAVPHGGI+QV
Sbjct: 28 PHLVRVDAARALRPLRPFWRSTGFCPPLPHGQADRYDLSWDQQLNLAYVGAVPHGGIEQV 87
Query: 376 RAHWLLGLVTARRSAGQGLSYNFTHLDRYLDLLRENQLLPGFELMGSPSGHFTDFEDKQQ 555
R HWLL L+TAR GQGL YNFTHLDRYLDLLRENQL+PGFELMGSPSG FT+FEDKQQ
Sbjct: 88 RTHWLLDLITARGLVGQGLRYNFTHLDRYLDLLRENQLVPGFELMGSPSGRFTNFEDKQQ 147
Query: 556 VFEWRNLVSLLARRYVGRYGLKHVSKWNFETWNEPDHHDFDNVSMTLQGFLNYYDACSEG 735
VFEWRNLVSLLARRY+GRYGL+HVSKWNFETWNEPDHHDFDNVSMTLQGFLNYYDACSEG
Sbjct: 148 VFEWRNLVSLLARRYIGRYGLEHVSKWNFETWNEPDHHDFDNVSMTLQGFLNYYDACSEG 207
Query: 736 LRAASPALRLGGPGDSFHDPPRSPLCWGLLAHCHNGTNFFTGEVGVRLDFIALHKKGAGS 915
LRAASPALRLGGPGD+FH PPRSPLCWGLL HC+NG+NFFTGEVGVRLD+IALHKKGAGS
Sbjct: 208 LRAASPALRLGGPGDAFHAPPRSPLCWGLLGHCNNGSNFFTGEVGVRLDYIALHKKGAGS 267
Query: 916 SIYIL 930
SI+IL
Sbjct: 268 SIFIL 272
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,213,403
Number of extensions: 1140715
Number of successful extensions: 4598
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4559
Number of HSP's successfully gapped: 2
Length of query: 310
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 208
Effective length of database: 14,306,398
Effective search space: 2975730784
Effective search space used: 2975730784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014137
(932 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,839,569
Number of extensions: 795893
Number of successful extensions: 3016
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 2994
Number of HSP's successfully gapped: 0
Length of query: 310
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 211
Effective length of database: 8,879,129
Effective search space: 1873496219
Effective search space used: 1873496219
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014137
(932 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032351.2| alpha-L-iduronidase [Mus musculus]. 452 e-127
>ref|NP_032351.2| alpha-L-iduronidase [Mus musculus].
Length = 643
Score = 452 bits (1162), Expect = e-127
Identities = 207/245 (84%), Positives = 223/245 (91%)
Frame = +1
Query: 196 PHLVRVDAARALGPLRPFWRSTGFCPPLPHSQAHRYDLSWDQQLNLAYVGAVPHGGIQQV 375
P+LVRVDAAR L PL PFWRSTGFCPPLPH QA +YDLSWDQQLNLAY+GAVPH GI+QV
Sbjct: 28 PYLVRVDAARPLRPLLPFWRSTGFCPPLPHDQADQYDLSWDQQLNLAYIGAVPHSGIEQV 87
Query: 376 RAHWLLGLVTARRSAGQGLSYNFTHLDRYLDLLRENQLLPGFELMGSPSGHFTDFEDKQQ 555
R HWLL L+TAR+S GQGL YNFTHLD +LDLL ENQLLPGFELMGSPSG+FTDF+DKQQ
Sbjct: 88 RIHWLLDLITARKSPGQGLMYNFTHLDAFLDLLMENQLLPGFELMGSPSGYFTDFDDKQQ 147
Query: 556 VFEWRNLVSLLARRYVGRYGLKHVSKWNFETWNEPDHHDFDNVSMTLQGFLNYYDACSEG 735
VFEW++LVSLLARRY+GRYGL HVSKWNFETWNEPDHHDFDNVSMT QGFLNYYDACSEG
Sbjct: 148 VFEWKDLVSLLARRYIGRYGLTHVSKWNFETWNEPDHHDFDNVSMTTQGFLNYYDACSEG 207
Query: 736 LRAASPALRLGGPGDSFHDPPRSPLCWGLLAHCHNGTNFFTGEVGVRLDFIALHKKGAGS 915
LR ASP L+LGGPGDSFH PRSP+CW LL HC NGTNFFTGEVGVRLD+I+LHKKGAGS
Sbjct: 208 LRIASPTLKLGGPGDSFHPLPRSPMCWSLLGHCANGTNFFTGEVGVRLDYISLHKKGAGS 267
Query: 916 SIYIL 930
SI IL
Sbjct: 268 SIAIL 272
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,633,204
Number of extensions: 887258
Number of successful extensions: 3390
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3370
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 209
Effective length of database: 12,583,923
Effective search space: 2630039907
Effective search space used: 2630039907
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014137
(932 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000194.2| alpha-L-iduronidase precursor [Homo sapiens]. 455 e-128
>ref|NP_000194.2| alpha-L-iduronidase precursor [Homo sapiens].
Length = 653
Score = 455 bits (1170), Expect = e-128
Identities = 213/245 (86%), Positives = 224/245 (91%)
Frame = +1
Query: 196 PHLVRVDAARALGPLRPFWRSTGFCPPLPHSQAHRYDLSWDQQLNLAYVGAVPHGGIQQV 375
PHLV VDAARAL PLR FWRSTGFCPPLPHSQA +Y LSWDQQLNLAYVGAVPH GI+QV
Sbjct: 29 PHLVHVDAARALWPLRRFWRSTGFCPPLPHSQADQYVLSWDQQLNLAYVGAVPHRGIKQV 88
Query: 376 RAHWLLGLVTARRSAGQGLSYNFTHLDRYLDLLRENQLLPGFELMGSPSGHFTDFEDKQQ 555
R HWLL LVT R S G+GLSYNFTHLD YLDLLRENQLLPGFELMGS SGHFTDFEDKQQ
Sbjct: 89 RTHWLLELVTTRGSTGRGLSYNFTHLDGYLDLLRENQLLPGFELMGSASGHFTDFEDKQQ 148
Query: 556 VFEWRNLVSLLARRYVGRYGLKHVSKWNFETWNEPDHHDFDNVSMTLQGFLNYYDACSEG 735
VFEW++LVS LARRY+GRYGL HVSKWNFETWNEPDHHDFDNVSMT+QGFLNYYDACSEG
Sbjct: 149 VFEWKDLVSSLARRYIGRYGLAHVSKWNFETWNEPDHHDFDNVSMTMQGFLNYYDACSEG 208
Query: 736 LRAASPALRLGGPGDSFHDPPRSPLCWGLLAHCHNGTNFFTGEVGVRLDFIALHKKGAGS 915
LRAASPALRLGGPGDSFH PPRSPL WGLL HCH+GTNFFTGE GVRLD+I+LH+KGA S
Sbjct: 209 LRAASPALRLGGPGDSFHTPPRSPLSWGLLRHCHDGTNFFTGEAGVRLDYISLHRKGARS 268
Query: 916 SIYIL 930
SI IL
Sbjct: 269 SISIL 273
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,659,735
Number of extensions: 1091533
Number of successful extensions: 4281
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4255
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 208
Effective length of database: 14,934,836
Effective search space: 3106445888
Effective search space used: 3106445888
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014137
(932 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL893376.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 283 8e-74
>gb|GL893376.1| Sus scrofa unplaced genomic scaffold chrU_scaffold2147
Length = 58060
Score = 283 bits (143), Expect = 8e-74
Identities = 143/143 (100%)
Strand = Plus / Plus
Query: 269 gtcctcccctgccgcacagccaggctcaccggtatgacctcagctgggaccagcagctca 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51465 gtcctcccctgccgcacagccaggctcaccggtatgacctcagctgggaccagcagctca 51524
Query: 329 acctggcctacgtgggcgccgtccctcatggtggcatccagcaggttcgggcccactggc 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51525 acctggcctacgtgggcgccgtccctcatggtggcatccagcaggttcgggcccactggc 51584
Query: 389 tgctgggccttgtcacagccagg 411
|||||||||||||||||||||||
Sbjct: 51585 tgctgggccttgtcacagccagg 51607
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 19,826,286
Number of extensions: 85
Number of successful extensions: 85
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 1
Length of query: 932
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 911
Effective length of database: 2,808,413,156
Effective search space: 2558464385116
Effective search space used: 2558464385116
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)