Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014144
(829 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033670.1| hypothetical protein LOC616423 [Bos taurus]. 149 2e-36
Alignment gi|XP_002699562.1| PREDICTED: hypothetical protein [Bos taurus]. 141 6e-34
Alignment gi|XP_001251828.1| PREDICTED: hypothetical protein [Bos taurus]. 141 6e-34
>ref|NP_001033670.1| hypothetical protein LOC616423 [Bos taurus].
Length = 123
Score = 149 bits (377), Expect = 2e-36
Identities = 83/123 (67%), Positives = 86/123 (69%)
Frame = +2
Query: 26 MGAPGGKINRPRTEXXXXXXXXXXXXXXXXXXXXXXXGAVIDEGLITRHHLKKRASSARA 205
MGAP GKINRPRTE GAVIDEGLITRHHLKKRASSARA
Sbjct: 1 MGAPSGKINRPRTELKKKLFKRRRVLNRERRLKHRVVGAVIDEGLITRHHLKKRASSARA 60
Query: 206 NITLSGKKRRKLLQQIRLAQKEKAAMEVEAPYKPARTSNSQXXXXXXXXXXQDVDMEDLE 385
NITLSGKKRRKLLQQIRLAQKEKAAMEVEAP KP RTS+ Q QDVDMEDLE
Sbjct: 61 NITLSGKKRRKLLQQIRLAQKEKAAMEVEAPPKPTRTSDPQPRSKKKTKAPQDVDMEDLE 120
Query: 386 NQS 394
++S
Sbjct: 121 DKS 123
>ref|XP_002699562.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 123
Score = 141 bits (356), Expect = 6e-34
Identities = 80/123 (65%), Positives = 83/123 (67%)
Frame = +2
Query: 26 MGAPGGKINRPRTEXXXXXXXXXXXXXXXXXXXXXXXGAVIDEGLITRHHLKKRASSARA 205
MGAP GKIN PRTE GAVIDEGLITRHHLKKRASSARA
Sbjct: 1 MGAPSGKINGPRTELKKKLFKRRQVLNREWRLKHWVVGAVIDEGLITRHHLKKRASSARA 60
Query: 206 NITLSGKKRRKLLQQIRLAQKEKAAMEVEAPYKPARTSNSQXXXXXXXXXXQDVDMEDLE 385
NITLSGK RKLLQQIRLAQKEKAAMEVEAP KP RTS+ Q QDVDMEDLE
Sbjct: 61 NITLSGKMCRKLLQQIRLAQKEKAAMEVEAPPKPTRTSDPQPRSKKKTKAPQDVDMEDLE 120
Query: 386 NQS 394
++S
Sbjct: 121 DKS 123
>ref|XP_001251828.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 123
Score = 141 bits (356), Expect = 6e-34
Identities = 80/123 (65%), Positives = 83/123 (67%)
Frame = +2
Query: 26 MGAPGGKINRPRTEXXXXXXXXXXXXXXXXXXXXXXXGAVIDEGLITRHHLKKRASSARA 205
MGAP GKIN PRTE GAVIDEGLITRHHLKKRASSARA
Sbjct: 1 MGAPSGKINGPRTELKKKLFKRRQVLNREWRLKHWVVGAVIDEGLITRHHLKKRASSARA 60
Query: 206 NITLSGKKRRKLLQQIRLAQKEKAAMEVEAPYKPARTSNSQXXXXXXXXXXQDVDMEDLE 385
NITLSGK RKLLQQIRLAQKEKAAMEVEAP KP RTS+ Q QDVDMEDLE
Sbjct: 61 NITLSGKMCRKLLQQIRLAQKEKAAMEVEAPPKPTRTSDPQPRSKKKTKAPQDVDMEDLE 120
Query: 386 NQS 394
++S
Sbjct: 121 DKS 123
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 27,134,126
Number of extensions: 740426
Number of successful extensions: 2493
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2481
Number of HSP's successfully gapped: 3
Length of query: 276
Length of database: 17,681,374
Length adjustment: 101
Effective length of query: 175
Effective length of database: 14,339,486
Effective search space: 2509410050
Effective search space used: 2509410050
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-014144
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014144
(829 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533264.1| PREDICTED: hypothetical protein XP_533264 [Cani... 154 1e-37
>ref|XP_533264.1| PREDICTED: hypothetical protein XP_533264 [Canis familiaris].
Length = 130
Score = 154 bits (388), Expect = 1e-37
Identities = 84/130 (64%), Positives = 88/130 (67%)
Frame = +2
Query: 26 MGAPGGKINRPRTEXXXXXXXXXXXXXXXXXXXXXXXGAVIDEGLITRHHLKKRASSARA 205
MG PGGKINRPRTE GAVIDEGLITRHHLKKRASSARA
Sbjct: 1 MGPPGGKINRPRTELKKKLFKRRRVLNRERRLKHRVVGAVIDEGLITRHHLKKRASSARA 60
Query: 206 NITLSGKKRRKLLQQIRLAQKEKAAMEVEAPYKPARTSNSQXXXXXXXXXXQDVDMEDLE 385
NITLSGKKRRKLLQQIRLAQKEKAAMEVEAP +P RTS Q QD+DMEDL
Sbjct: 61 NITLSGKKRRKLLQQIRLAQKEKAAMEVEAPTRPVRTSGPQPKRQKKTKAPQDIDMEDLG 120
Query: 386 NQS*ISHPSH 415
++ ISHP H
Sbjct: 121 DERGISHPFH 130
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 28,112,544
Number of extensions: 690015
Number of successful extensions: 2467
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2464
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 18,874,504
Length adjustment: 101
Effective length of query: 175
Effective length of database: 15,507,568
Effective search space: 2713824400
Effective search space used: 2713824400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014144
(829 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003353874.1| PREDICTED: hypothetical protein LOC100621377... 164 4e-41
>ref|XP_003353874.1| PREDICTED: hypothetical protein LOC100621377 [Sus scrofa].
Length = 123
Score = 164 bits (416), Expect = 4e-41
Identities = 90/123 (73%), Positives = 90/123 (73%)
Frame = +2
Query: 26 MGAPGGKINRPRTEXXXXXXXXXXXXXXXXXXXXXXXGAVIDEGLITRHHLKKRASSARA 205
MGAPGGKINRPRTE GAVIDEGLITRHHLKKRASSARA
Sbjct: 1 MGAPGGKINRPRTELKKKLFKRRRVLSRERRLRHRVVGAVIDEGLITRHHLKKRASSARA 60
Query: 206 NITLSGKKRRKLLQQIRLAQKEKAAMEVEAPYKPARTSNSQXXXXXXXXXXQDVDMEDLE 385
NITLSGKKRRKLLQQIRLAQKEKAAMEVEAPYKPARTSNSQ QDVDMEDLE
Sbjct: 61 NITLSGKKRRKLLQQIRLAQKEKAAMEVEAPYKPARTSNSQPKLKKKPKPPQDVDMEDLE 120
Query: 386 NQS 394
NQS
Sbjct: 121 NQS 123
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 18,226,880
Number of extensions: 592264
Number of successful extensions: 1624
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1621
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 178
Effective length of database: 8,904,026
Effective search space: 1584916628
Effective search space used: 1584916628
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014144
(829 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079739.1| hypothetical protein LOC66276 [Mus musculus]. 138 4e-33
Alignment gi|XP_001480109.1| PREDICTED: hypothetical protein LOC100048454... 138 4e-33
>ref|NP_079739.1| hypothetical protein LOC66276 [Mus musculus].
Length = 123
Score = 138 bits (348), Expect = 4e-33
Identities = 78/123 (63%), Positives = 81/123 (65%)
Frame = +2
Query: 26 MGAPGGKINRPRTEXXXXXXXXXXXXXXXXXXXXXXXGAVIDEGLITRHHLKKRASSARA 205
M PGGKINRPRTE GAVIDEGL T+HHLKKRASSARA
Sbjct: 1 MAPPGGKINRPRTELKKKLFKRRRVLSRDRRRKRQVVGAVIDEGLTTKHHLKKRASSARA 60
Query: 206 NITLSGKKRRKLLQQIRLAQKEKAAMEVEAPYKPARTSNSQXXXXXXXXXXQDVDMEDLE 385
NITLSGKKRRKLLQQIRLAQKEKAAMEVEAP K RTS Q QDV MEDLE
Sbjct: 61 NITLSGKKRRKLLQQIRLAQKEKAAMEVEAPSKSTRTSQPQPKQQKKIKAPQDVAMEDLE 120
Query: 386 NQS 394
++S
Sbjct: 121 DKS 123
>ref|XP_001480109.1| PREDICTED: hypothetical protein LOC100048454 [Mus musculus].
Length = 123
Score = 138 bits (348), Expect = 4e-33
Identities = 78/123 (63%), Positives = 81/123 (65%)
Frame = +2
Query: 26 MGAPGGKINRPRTEXXXXXXXXXXXXXXXXXXXXXXXGAVIDEGLITRHHLKKRASSARA 205
M PGGKINRPRTE GAVIDEGL T+HHLKKRASSARA
Sbjct: 1 MAPPGGKINRPRTELKKKLFKRRRVLSRDRRRKRQVVGAVIDEGLTTKHHLKKRASSARA 60
Query: 206 NITLSGKKRRKLLQQIRLAQKEKAAMEVEAPYKPARTSNSQXXXXXXXXXXQDVDMEDLE 385
NITLSGKKRRKLLQQIRLAQKEKAAMEVEAP K RTS Q QDV MEDLE
Sbjct: 61 NITLSGKKRRKLLQQIRLAQKEKAAMEVEAPSKSTRTSQPQPKQQKKIKAPQDVAMEDLE 120
Query: 386 NQS 394
++S
Sbjct: 121 DKS 123
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 23,118,259
Number of extensions: 557411
Number of successful extensions: 1979
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1976
Number of HSP's successfully gapped: 2
Length of query: 276
Length of database: 15,617,559
Length adjustment: 100
Effective length of query: 176
Effective length of database: 12,613,959
Effective search space: 2220056784
Effective search space used: 2220056784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014144
(829 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_077004.2| hypothetical protein LOC79081 [Homo sapiens]. 138 5e-33
>ref|NP_077004.2| hypothetical protein LOC79081 [Homo sapiens].
Length = 263
Score = 138 bits (348), Expect = 5e-33
Identities = 65/84 (77%), Positives = 71/84 (84%)
Frame = +1
Query: 64 GAEEEAVQATACAEQGAATEAPCGRSRDRRRADHKAPPQEAGVQCTCQHYSIREEAQKTP 243
GAEEEAVQ A E GAA+EAP GR DR RADH APPQEAGVQCTCQHY++REEAQKTP
Sbjct: 180 GAEEEAVQTPAGVESGAASEAPGGRGCDRPRADHAAPPQEAGVQCTCQHYTVREEAQKTP 239
Query: 244 PADPTCPERKSSNGSGSPLQASQD 315
PADP CPER+ S+GSGSP +ASQD
Sbjct: 240 PADPACPEREDSHGSGSPFKASQD 263
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 27,428,473
Number of extensions: 670129
Number of successful extensions: 2531
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2528
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 18,297,164
Length adjustment: 101
Effective length of query: 175
Effective length of database: 14,967,800
Effective search space: 2619365000
Effective search space used: 2619365000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014144
(829 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 866 0.0
Sscrofa_Chr14 460 e-127
Sscrofa_ChrX 319 1e-84
>Sscrofa_Chr02
|| Length = 162569375
Score = 866 bits (437), Expect = 0.0
Identities = 451/458 (98%)
Strand = Plus / Plus
Query: 286 agtggaagccccctacaagccagccaggactagtaattcacagccaaaattgaaaaagaa 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8434788 agtggaagccccctacaagccagccaggactagtaattcacagccaaaattgaaaaagaa 8434847
Query: 346 gccaaagnnnnnnnaggatgtagacatggaggacctcgaaaatcagagctaaatttcaca 405
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8434848 gccaaagcccccccaggatgtagacatggaggacctcgaaaatcagagctaaatttcaca 8434907
Query: 406 cccctcgcaccagaagattctcagctggagccaggaggagactcgatggttgtttcaaag 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8434908 cccctcgcaccagaagattctcagctggagccaggaggagactcgatggttgtttcaaag 8434967
Query: 466 gacttgggagaaagcgttgctccttttcactctccccagattcctcttccctgatggctt 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8434968 gacttgggagaaagcgttgctccttttcactctccccagattcctcttccctgatggctt 8435027
Query: 526 agtgacctgacctggagggatgtatggagagggaaagagtggaaaagaaagattggagag 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8435028 agtgacctgacctggagggatgtatggagagggaaagagtggaaaagaaagattggagag 8435087
Query: 586 gggggcttcctgatgagtccactccatttgtaataaagccctagagttctcaccgagatg 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8435088 gggggcttcctgatgagtccactccatttgtaataaagccctagagttctcaccgagatg 8435147
Query: 646 cctgtgattgaatgtaggaagagggatgggccatgagaaggggctgtgagtgaggaaaca 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8435148 cctgtgattgaatgtaggaagagggatgggccatgagaaggggctgtgagtgaggaaaca 8435207
Query: 706 agacaattgggtagcagctctctctctctctttttttt 743
||||||||||||||||||||||||||||||||||||||
Sbjct: 8435208 agacaattgggtagcagctctctctctctctttttttt 8435245
Score = 254 bits (128), Expect = 7e-65
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 64 ggagctgaagaagaagctgttcaagcgacggcgtgtgctgagcagggagcggcgactgag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8430239 ggagctgaagaagaagctgttcaagcgacggcgtgtgctgagcagggagcggcgactgag 8430298
Query: 124 gcaccgtgtggtcggagccgtgatagacgaagggctgatcacaaggcaccacctcaagaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8430299 gcaccgtgtggtcggagccgtgatagacgaagggctgatcacaaggcaccacctcaagaa 8430358
Query: 184 gcgggcgt 191
||||||||
Sbjct: 8430359 gcgggcgt 8430366
Score = 194 bits (98), Expect = 5e-47
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 190 gtccagtgcacgtgccaacattactctatccgggaagaagcgcagaaaactcctccagca 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8434608 gtccagtgcacgtgccaacattactctatccgggaagaagcgcagaaaactcctccagca 8434667
Query: 250 gatccgacttgcccagaaagaaaaagcagcaatggaag 287
||||||||||||||||||||||||||||||||||||||
Sbjct: 8434668 gatccgacttgcccagaaagaaaaagcagcaatggaag 8434705
Score = 127 bits (64), Expect = 1e-26
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 2 ggatgcggataccgctgctcaaccatgggtgctccgggcggaaaaatcaaccggccgcga 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8430024 ggatgcggataccgctgctcaaccatgggtgctccgggcggaaaaatcaaccggccgcga 8430083
Query: 62 acgg 65
||||
Sbjct: 8430084 acgg 8430087
>Sscrofa_Chr14
|| Length = 153851969
Score = 460 bits (232), Expect = e-127
Identities = 522/621 (84%), Gaps = 20/621 (3%)
Strand = Plus / Plus
Query: 21 caaccatgggtgctccgggcggaaaaatcaaccggccgcgaacggagctgaagaagaagc 80
|||||| |||||||||||| || |||||||||| ||| | | |||||| |||||| |
Sbjct: 120653765 caaccaggggtgctccgggtgggaaaatcaaccagccccagaaggagctcaagaag---c 120653821
Query: 81 tgttcaagcgacggcgtgtgctgagcagggagcggcgactgaggcaccgtgtggtcggag 140
|||||||||| ||| | ||| ||||| |||||| | |||||| ||||||||||||| |||
Sbjct: 120653822 tgttcaagcggcggtgggtgttgagccgggagcagtgactgaagcaccgtgtggtcagag 120653881
Query: 141 ccgtgatagacgaagggctgatcacaaggcaccacctcaagaagcgggcgtccagtgcac 200
|||||||| | ||||||||||||||| |||||||||||| |||| |||||||
Sbjct: 120653882 ccgtgatacaggaagggctgatcacacggcaccacctcaggaagtgggcgtc-------- 120653933
Query: 201 gtgccaacattactctatccgggaagaagcgcagaaaactcctccagcagatccgacttg 260
|||||| ||| ||| ||||||||| ||||||||||||||||||||||| | ||||
Sbjct: 120653934 -----aacattcctccatctgggaagaagtgcagaaaactcctccagcagatctggcttg 120653988
Query: 261 cccagaaagaaaaagcagcaatggaagtggaagccccctacaagccagccaggactagta 320
| |||||||| ||||||||||||||||||||||||| ||| | | ||| || ||||| |
Sbjct: 120653989 cacagaaagagaaagcagcaatggaagtggaagccctctatgaactagctagcactagaa 120654048
Query: 321 attcacagccaaaattgaaaaagaagccaaagnnnnnnnaggatgtagacatggaggacc 380
||||| ||||||||||||||| |||| |||| |||||||||||||||||||||
Sbjct: 120654049 attcagagccaaaattgaaaacgaagacaaaagccccccaggatgtagacatggaggacc 120654108
Query: 381 tcgaaaatcagagctaaatttcacacccctcgcaccagaagattctcagctggagccagg 440
|| ||||||||||| | || |||||||||||| ||| ||||||||||||||||| ||||
Sbjct: 120654109 tcacaaatcagagctga-ttgcacacccctcgcgccaaaagattctcagctggagacagg 120654167
Query: 441 aggagactcgatggttgtttcaaaggacttgggagaaagcgttgctccttttcactctcc 500
|| |||||| ||||| |||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 120654168 agaagactccatggtcgtttcaaaggactttggagaaggcgttgctccttttcactctcc 120654227
Query: 501 ccagattcctcttccctgatggcttagtgacctgacctggagggatgtatggagagggaa 560
|||| |||||||||| |||||| |||||||||||| || |||| ||||| |||||| |
Sbjct: 120654228 ccagggtcctcttcccggatggcctagtgacctgacgtgaaggggtgtattgagaggaag 120654287
Query: 561 agagtggaaaagaaagattggagag---gggggcttcctgatgagtccactccatttgta 617
|| |||||||||||||||||||||| ||||| |||||| | ||||| ||| ||| |||
Sbjct: 120654288 agggtggaaaagaaagattggagagggaggggggttcctggtcagtccgctctattcgta 120654347
Query: 618 ataaagccctagagttctcac 638
|||||||||||||||||||||
Sbjct: 120654348 ataaagccctagagttctcac 120654368
>Sscrofa_ChrX
|| Length = 144288218
Score = 319 bits (161), Expect = 1e-84
Identities = 285/323 (88%), Gaps = 5/323 (1%)
Strand = Plus / Plus
Query: 392 agctaaatttcacacccctcgcaccagaagattctcagctggagccaggaggagactcga 451
|||||||||||||||| ||| ||||| |||||||||||||||||||||||||| |||||
Sbjct: 67988712 agctaaatttcacacctctcacaccaaaagattctcagctggagccaggagga--ctcga 67988769
Query: 452 tggttgtttcaaaggacttgggagaaagcgttgctccttttcactctccccagattcctc 511
||| ||||| |||||| ||||||||| |||||| |||||||||||||||||||||||
Sbjct: 67988770 tggccatttcagaggactatggagaaagcattgctctttttcactctccccagattcctc 67988829
Query: 512 ttccctgatggcttagtgacctgacctggagggatgtatggagagggaaagagtggaaaa 571
|||||| ||||| |||||||||| |||||||||||||| |||||| | || || |||||
Sbjct: 67988830 ttccctaatggcctagtgacctgccctggagggatgtactgagaggaagagggtagaaaa 67988889
Query: 572 gaaagattggagaggggggcttcctgatgagtccactccatttgtaataaagccctagag 631
|||||||| |||||||| ||||| || ||||||||||||||||||||||||| |||
Sbjct: 67988890 gaaagatta-agaggggg--ttcctaatcagtccactccatttgtaataaagccttagca 67988946
Query: 632 ttctcaccgagatgcctgtgattgaatgtaggaagagggatgggccatgagaaggggctg 691
||||||| |||||| ||||||| ||| ||||||| ||||||||||||||||||||||||
Sbjct: 67988947 ttctcactgagatgtgtgtgattaaatataggaagggggatgggccatgagaaggggctg 67989006
Query: 692 tgagtgaggaaacaagacaattg 714
||||||||||||||| |||||||
Sbjct: 67989007 tgagtgaggaaacaaaacaattg 67989029
Score = 319 bits (161), Expect = 1e-84
Identities = 285/323 (88%), Gaps = 5/323 (1%)
Strand = Plus / Plus
Query: 392 agctaaatttcacacccctcgcaccagaagattctcagctggagccaggaggagactcga 451
|||||||||||||||| ||| ||||| |||||||||||||||||||||||||| |||||
Sbjct: 68245232 agctaaatttcacacctctcacaccaaaagattctcagctggagccaggagga--ctcga 68245289
Query: 452 tggttgtttcaaaggacttgggagaaagcgttgctccttttcactctccccagattcctc 511
||| ||||| |||||| ||||||||| |||||| |||||||||||||||||||||||
Sbjct: 68245290 tggccatttcagaggactatggagaaagcattgctctttttcactctccccagattcctc 68245349
Query: 512 ttccctgatggcttagtgacctgacctggagggatgtatggagagggaaagagtggaaaa 571
|||||| ||||| |||||||||| |||||||||||||| |||||| | || || |||||
Sbjct: 68245350 ttccctaatggcctagtgacctgccctggagggatgtactgagaggaagagggtagaaaa 68245409
Query: 572 gaaagattggagaggggggcttcctgatgagtccactccatttgtaataaagccctagag 631
|||||||| |||||||| ||||| || ||||||||||||||||||||||||| |||
Sbjct: 68245410 gaaagatta-agaggggg--ttcctaatcagtccactccatttgtaataaagccttagca 68245466
Query: 632 ttctcaccgagatgcctgtgattgaatgtaggaagagggatgggccatgagaaggggctg 691
||||||| |||||| ||||||| ||| ||||||| ||||||||||||||||||||||||
Sbjct: 68245467 ttctcactgagatgtgtgtgattaaatataggaagggggatgggccatgagaaggggctg 68245526
Query: 692 tgagtgaggaaacaagacaattg 714
||||||||||||||| |||||||
Sbjct: 68245527 tgagtgaggaaacaaaacaattg 68245549
Score = 157 bits (79), Expect = 1e-35
Identities = 210/251 (83%), Gaps = 2/251 (0%)
Strand = Plus / Plus
Query: 59 cgaacggagctgaagaagaagctgtt-caagcgacggcgtgtgctgagcagggagcggcg 117
||||| ||||| ||| |||||||||| |||| || || | ||| ||||| | | ||||||
Sbjct: 67988366 cgaacagagctaaaggagaagctgtttcaagagatggtgggtgttgagctgagggcggcg 67988425
Query: 118 actgaggcaccgtgtggtcggagccgtgatagacgaagggctgatcacaaggcaccacct 177
|| | ||||| |||||| || || | |||||| ||||||||||||||| |||||| | |
Sbjct: 67988426 accaaagcaccatgtggttggggctgcgatagatgaagggctgatcacacggcacccctt 67988485
Query: 178 caagaagcgggcgtccagtgcacgtgccaacattactctatccgggaagaagcgcagaaa 237
||||||| |||| ||||||| | |||||||||||||| | || ||||||||| ||| |||
Sbjct: 67988486 caagaagtgggcatccagtgaatgtgccaacattactttgtctgggaagaagtgcaaaaa 67988545
Query: 238 actcctccagcagatccgacttgcccagaaagaaaaagcagcaatggaagtggaagcccc 297
|||||||||||||||| | ||| || ||||||| |||||| |||||| |||||||||| |
Sbjct: 67988546 actcctccagcagatctggcttacctagaaagagaaagcaccaatgg-agtggaagcctc 67988604
Query: 298 ctacaagccag 308
|||||||||||
Sbjct: 67988605 ctacaagccag 67988615
Score = 157 bits (79), Expect = 1e-35
Identities = 210/251 (83%), Gaps = 2/251 (0%)
Strand = Plus / Plus
Query: 59 cgaacggagctgaagaagaagctgtt-caagcgacggcgtgtgctgagcagggagcggcg 117
||||| ||||| ||| |||||||||| |||| || || | ||| ||||| | | ||||||
Sbjct: 68244886 cgaacagagctaaaggagaagctgtttcaagagatggtgggtgttgagctgagggcggcg 68244945
Query: 118 actgaggcaccgtgtggtcggagccgtgatagacgaagggctgatcacaaggcaccacct 177
|| | ||||| |||||| || || | |||||| ||||||||||||||| |||||| | |
Sbjct: 68244946 accaaagcaccatgtggttggggctgcgatagatgaagggctgatcacacggcacccctt 68245005
Query: 178 caagaagcgggcgtccagtgcacgtgccaacattactctatccgggaagaagcgcagaaa 237
||||||| |||| ||||||| | |||||||||||||| | || ||||||||| ||| |||
Sbjct: 68245006 caagaagtgggcatccagtgaatgtgccaacattactttgtctgggaagaagtgcaaaaa 68245065
Query: 238 actcctccagcagatccgacttgcccagaaagaaaaagcagcaatggaagtggaagcccc 297
|||||||||||||||| | ||| || ||||||| |||||| |||||| |||||||||| |
Sbjct: 68245066 actcctccagcagatctggcttacctagaaagagaaagcaccaatgg-agtggaagcctc 68245124
Query: 298 ctacaagccag 308
|||||||||||
Sbjct: 68245125 ctacaagccag 68245135
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,120,920
Number of extensions: 16842
Number of successful extensions: 16842
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 16833
Number of HSP's successfully gapped: 11
Length of query: 829
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 808
Effective length of database: 2,808,413,156
Effective search space: 2269197830048
Effective search space used: 2269197830048
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)