Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014167
(943 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069428.1| CKLF-like MARVEL transmembrane domain-contai... 239 3e-63
Alignment gi|NP_001077218.1| CKLF-like MARVEL transmembrane domain-contai... 60 3e-09
>ref|NP_001069428.1| CKLF-like MARVEL transmembrane domain-containing protein 7 [Bos
taurus].
Length = 174
Score = 239 bits (610), Expect = 3e-63
Identities = 128/173 (73%), Positives = 131/173 (75%)
Frame = +2
Query: 71 MSHGAGLVRTTCXXXXXXXXXXXXXXXXXXXXEGLLDPFYPRTHAALLKVAQMITLLIAF 250
MSHGAGLVRTTC LLDP YPRT AA+LKVAQM TLLIAF
Sbjct: 1 MSHGAGLVRTTCSSGSAPGDGVGAGPLGSSSSVRLLDPVYPRTQAAMLKVAQMATLLIAF 60
Query: 251 ICVRSSLKITYSAYSYFEVVTICNLIMILAFYLVHLFRLYRVLTCISWPLSEXXXXXXXX 430
ICVRSSL +YSAYSYFEVVTICNLIMILAFYL HLFRL RVLTCISWPLSE
Sbjct: 61 ICVRSSLWTSYSAYSYFEVVTICNLIMILAFYLAHLFRLPRVLTCISWPLSELLHYLIGT 120
Query: 431 XXXXIASIVAASKSYGQSGLVAGAIFGFLATFLCLASVWLSYKISCVTQSTDA 589
IASIVAASKSY QSGLVAGA+FGFLATFLCLASVWLSYKISCVTQSTDA
Sbjct: 121 LLLLIASIVAASKSYSQSGLVAGAVFGFLATFLCLASVWLSYKISCVTQSTDA 173
>ref|NP_001077218.1| CKLF-like MARVEL transmembrane domain-containing protein 4 [Bos
taurus].
Length = 208
Score = 60.1 bits (144), Expect = 3e-09
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 4/140 (2%)
Frame = +2
Query: 179 DPFYPRTHAALLKVAQMITLLIAFICVRSSLKITYSAYSYFEVVTICNLIMILAFYLV-H 355
DP Y R LKVAQ+I LIAFIC+ + ++ + YF C+ ++ L+
Sbjct: 46 DPDYLRGALGCLKVAQVILALIAFICIETIMECSPCEGLYFFEFVSCSAFVVTGVLLILF 105
Query: 356 LFRLYRVLTCISWPLSEXXXXXXXXXXXXIASIVAASKSYGQSGLVAGAIFGFLATFLCL 535
L+ + I+W L++ IASIV A+ ++ +A IFGFLAT
Sbjct: 106 SLNLHMRIPQINWNLTDLVNTGLSTFFFFIASIVLAALNHKTGAEIAAVIFGFLATAAYA 165
Query: 536 ASVWLS---YKISCVTQSTD 586
+ +L+ +++S QS +
Sbjct: 166 VNTFLAVQKWRVSLRQQSAN 185
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 31,251,140
Number of extensions: 782490
Number of successful extensions: 3434
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3428
Number of HSP's successfully gapped: 2
Length of query: 314
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 212
Effective length of database: 14,306,398
Effective search space: 3032956376
Effective search space used: 3032956376
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-014167
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014167
(943 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852137.1| PREDICTED: similar to chemokine-like factor sup... 212 4e-55
>ref|XP_852137.1| PREDICTED: similar to chemokine-like factor superfamily 7 isoform a
[Canis familiaris].
Length = 303
Score = 212 bits (540), Expect = 4e-55
Identities = 110/139 (79%), Positives = 117/139 (84%)
Frame = +2
Query: 167 EGLLDPFYPRTHAALLKVAQMITLLIAFICVRSSLKITYSAYSYFEVVTICNLIMILAFY 346
EG LDP YPRT +ALLKVAQMITLLIAFICV S+ +Y AYSYFEVVTICNLIMIL FY
Sbjct: 53 EGPLDPVYPRTSSALLKVAQMITLLIAFICVNRSMWTSY-AYSYFEVVTICNLIMILVFY 111
Query: 347 LVHLFRLYRVLTCISWPLSEXXXXXXXXXXXXIASIVAASKSYGQSGLVAGAIFGFLATF 526
LVHLFRLYR+LTCISWPLSE IASIVAASKSY QSGLVAGAIFGF+ATF
Sbjct: 112 LVHLFRLYRMLTCISWPLSELLHYLIGTLLLLIASIVAASKSYSQSGLVAGAIFGFVATF 171
Query: 527 LCLASVWLSYKISCVTQST 583
LCLAS+W+SYKISCVTQST
Sbjct: 172 LCLASIWMSYKISCVTQST 190
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 32,725,543
Number of extensions: 810798
Number of successful extensions: 3574
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3569
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 211
Effective length of database: 15,440,896
Effective search space: 3258029056
Effective search space used: 3258029056
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014167
(943 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230851.1| CKLF-like MARVEL transmembrane domain contai... 272 2e-73
>ref|NP_001230851.1| CKLF-like MARVEL transmembrane domain containing 7 [Sus scrofa].
Length = 175
Score = 272 bits (695), Expect = 2e-73
Identities = 143/175 (81%), Positives = 143/175 (81%)
Frame = +2
Query: 71 MSHGAGLVRTTCXXXXXXXXXXXXXXXXXXXXEGLLDPFYPRTHAALLKVAQMITLLIAF 250
MSHGAGLVRTTC EGLLDPFYPRTHAALLKVAQMITLLIAF
Sbjct: 1 MSHGAGLVRTTCSSGSSSGPGAGAGQPGAGSSEGLLDPFYPRTHAALLKVAQMITLLIAF 60
Query: 251 ICVRSSLKITYSAYSYFEVVTICNLIMILAFYLVHLFRLYRVLTCISWPLSEXXXXXXXX 430
ICVRSSLKITYSAYSYFEVVTICNLIMILAFYLVHLFRLYRVLTCISWPLSE
Sbjct: 61 ICVRSSLKITYSAYSYFEVVTICNLIMILAFYLVHLFRLYRVLTCISWPLSELLHYLIGT 120
Query: 431 XXXXIASIVAASKSYGQSGLVAGAIFGFLATFLCLASVWLSYKISCVTQSTDADV 595
IASIVAASKSYGQSGLVAGAIFGFLATFLCLASVWLSYKISCVTQSTDADV
Sbjct: 121 LLLLIASIVAASKSYGQSGLVAGAIFGFLATFLCLASVWLSYKISCVTQSTDADV 175
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 20,191,398
Number of extensions: 504144
Number of successful extensions: 2180
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2179
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 215
Effective length of database: 8,879,129
Effective search space: 1909012735
Effective search space used: 1909012735
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014167
(943 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598739.1| CKLF-like MARVEL transmembrane domain-containin... 223 2e-58
Alignment gi|NP_705810.2| CKLF-like MARVEL transmembrane domain-containin... 63 4e-10
Alignment gi|NP_062729.1| proteolipid protein 2 [Mus musculus]. 51 1e-06
>ref|NP_598739.1| CKLF-like MARVEL transmembrane domain-containing protein 7 [Mus
musculus].
Length = 167
Score = 223 bits (568), Expect = 2e-58
Identities = 117/173 (67%), Positives = 129/173 (74%)
Frame = +2
Query: 71 MSHGAGLVRTTCXXXXXXXXXXXXXXXXXXXXEGLLDPFYPRTHAALLKVAQMITLLIAF 250
MSHG+GLVRTTC EGLLD YP TH AL KVAQM+TLLIAF
Sbjct: 1 MSHGSGLVRTTCSSGGALGPGQPS--------EGLLDRVYPLTHGALFKVAQMVTLLIAF 52
Query: 251 ICVRSSLKITYSAYSYFEVVTICNLIMILAFYLVHLFRLYRVLTCISWPLSEXXXXXXXX 430
ICVRSS+ I Y A+S+FEVVT+C+LIMIL FYLVHLFR YRVLTCISWPLSE
Sbjct: 53 ICVRSSVPIDYGAHSFFEVVTMCDLIMILIFYLVHLFRFYRVLTCISWPLSELLHYLIGT 112
Query: 431 XXXXIASIVAASKSYGQSGLVAGAIFGFLATFLCLASVWLSYKISCVTQSTDA 589
IASIV ASKSY QSGLVAGAIFGFLA+FLCLAS+WLSYKI+C+TQS+DA
Sbjct: 113 LLLLIASIVIASKSYNQSGLVAGAIFGFLASFLCLASLWLSYKITCITQSSDA 165
>ref|NP_705810.2| CKLF-like MARVEL transmembrane domain-containing protein 4 [Mus
musculus].
Length = 208
Score = 62.8 bits (151), Expect = 4e-10
Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 4/140 (2%)
Frame = +2
Query: 179 DPFYPRTHAALLKVAQMITLLIAFICVRSSLKITYSAYSYFEVVTICNLIMILAFYLVHL 358
DP Y R LKVAQ+I LIAFIC+ + ++ + YF C+ ++ L+
Sbjct: 46 DPDYLRGALGRLKVAQVILALIAFICIETIMECSPCEGLYFFEFVSCSAFVVTGVLLILF 105
Query: 359 -FRLYRVLTCISWPLSEXXXXXXXXXXXXIASIVAASKSYGQSGLVAGAIFGFLATFLCL 535
L+ + I+W L++ IASIV A+ ++ +A IFGFLAT
Sbjct: 106 SLNLHMRIPQINWNLTDLVNTGLSTFFFFIASIVLAALNHKTGAEIAAVIFGFLATAAYA 165
Query: 536 ASVWLS---YKISCVTQSTD 586
S +L+ +++S QST+
Sbjct: 166 VSTFLAMQKWRVSVRQQSTN 185
>ref|NP_062729.1| proteolipid protein 2 [Mus musculus].
Length = 152
Score = 51.2 bits (121), Expect = 1e-06
Identities = 37/125 (29%), Positives = 60/125 (48%)
Frame = +2
Query: 188 YPRTHAALLKVAQMITLLIAFICVRSSLKITYSAYSYFEVVTICNLIMILAFYLVHLFRL 367
+ RT +L A++I L+ IC +S T SAYS V+ + ++L FY L
Sbjct: 19 FSRTKKGILLFAEIILCLVILICFSAS---TTSAYSSLSVIEMICAAVLLVFYTCD---L 72
Query: 368 YRVLTCISWPLSEXXXXXXXXXXXXIASIVAASKSYGQSGLVAGAIFGFLATFLCLASVW 547
+ ++ I+WP ++ I SIV + G S +VAG I G LAT L +
Sbjct: 73 HSKISFINWPWTDFFRSLIATILYLITSIVVLVEGRGSSRVVAG-ILGLLATLLFGYDAY 131
Query: 548 LSYKI 562
+++ +
Sbjct: 132 ITFPL 136
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 26,932,511
Number of extensions: 652227
Number of successful extensions: 2591
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2584
Number of HSP's successfully gapped: 3
Length of query: 314
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 213
Effective length of database: 12,583,923
Effective search space: 2680375599
Effective search space used: 2680375599
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014167
(943 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_612419.1| CKLF-like MARVEL transmembrane domain-containin... 247 1e-65
Alignment gi|NP_852137.1| CKLF-like MARVEL transmembrane domain-containin... 200 2e-51
Alignment gi|NP_852662.1| CKLF-like MARVEL transmembrane domain-containin... 61 1e-09
Alignment gi|NP_848933.1| CKLF-like MARVEL transmembrane domain-containin... 61 1e-09
>ref|NP_612419.1| CKLF-like MARVEL transmembrane domain-containing protein 7 isoform
a [Homo sapiens].
Length = 175
Score = 247 bits (630), Expect = 1e-65
Identities = 130/175 (74%), Positives = 135/175 (77%)
Frame = +2
Query: 71 MSHGAGLVRTTCXXXXXXXXXXXXXXXXXXXXEGLLDPFYPRTHAALLKVAQMITLLIAF 250
MSHGAGLVRTTC EGLLD YPRTHAALLKVAQM+TLLIAF
Sbjct: 1 MSHGAGLVRTTCSSGSALGPGAGAAQPSASPLEGLLDLSYPRTHAALLKVAQMVTLLIAF 60
Query: 251 ICVRSSLKITYSAYSYFEVVTICNLIMILAFYLVHLFRLYRVLTCISWPLSEXXXXXXXX 430
ICVRSSL YSAYSYFEVVTIC+LIMILAFYLVHLFR YRVLTCISWPLSE
Sbjct: 61 ICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVLTCISWPLSELLHYLIGT 120
Query: 431 XXXXIASIVAASKSYGQSGLVAGAIFGFLATFLCLASVWLSYKISCVTQSTDADV 595
IASIVAASKSY QSGLVAGAIFGF+ATFLC+AS+WLSYKISCVTQSTDA V
Sbjct: 121 LLLLIASIVAASKSYNQSGLVAGAIFGFMATFLCMASIWLSYKISCVTQSTDAAV 175
>ref|NP_852137.1| CKLF-like MARVEL transmembrane domain-containing protein 7 isoform
b [Homo sapiens].
Length = 142
Score = 200 bits (508), Expect = 2e-51
Identities = 110/175 (62%), Positives = 115/175 (65%)
Frame = +2
Query: 71 MSHGAGLVRTTCXXXXXXXXXXXXXXXXXXXXEGLLDPFYPRTHAALLKVAQMITLLIAF 250
MSHGAGLVRTTC EGLLD YPRTHAALLKVAQM+TLLIAF
Sbjct: 1 MSHGAGLVRTTCSSGSALGPGAGAAQPSASPLEGLLDLSYPRTHAALLKVAQMVTLLIAF 60
Query: 251 ICVRSSLKITYSAYSYFEVVTICNLIMILAFYLVHLFRLYRVLTCISWPLSEXXXXXXXX 430
ICVRSSL YSAYSYFEVVTIC+LIMILAFYLVHLFR YRVLTCISWPLS
Sbjct: 61 ICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVLTCISWPLS--------- 111
Query: 431 XXXXIASIVAASKSYGQSGLVAGAIFGFLATFLCLASVWLSYKISCVTQSTDADV 595
IFGF+ATFLC+AS+WLSYKISCVTQSTDA V
Sbjct: 112 ------------------------IFGFMATFLCMASIWLSYKISCVTQSTDAAV 142
>ref|NP_852662.1| CKLF-like MARVEL transmembrane domain-containing protein 4 isoform
2 [Homo sapiens].
Length = 208
Score = 61.2 bits (147), Expect = 1e-09
Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 4/140 (2%)
Frame = +2
Query: 179 DPFYPRTHAALLKVAQMITLLIAFICVRSSLKITYSAYSYFEVVTICNLIMILAFYLVHL 358
DP Y R LKVAQ+I LIAFIC+ + + + YF C+ ++ L+
Sbjct: 46 DPDYLRGALGRLKVAQVILALIAFICIETIMACSPCEGLYFFEFVSCSAFVVTGVLLIMF 105
Query: 359 -FRLYRVLTCISWPLSEXXXXXXXXXXXXIASIVAASKSYGQSGLVAGAIFGFLATFLCL 535
L+ + I+W L++ IASIV A+ ++ +A IFGFLAT
Sbjct: 106 SLNLHMRIPQINWNLTDLVNTGLSAFLFFIASIVLAALNHRAGAEIAAVIFGFLATAAYA 165
Query: 536 ASVWLS---YKISCVTQSTD 586
+ +L+ +++S QST+
Sbjct: 166 VNTFLAVQKWRVSVRQQSTN 185
>ref|NP_848933.1| CKLF-like MARVEL transmembrane domain-containing protein 4 isoform
1 [Homo sapiens].
Length = 234
Score = 61.2 bits (147), Expect = 1e-09
Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 4/140 (2%)
Frame = +2
Query: 179 DPFYPRTHAALLKVAQMITLLIAFICVRSSLKITYSAYSYFEVVTICNLIMILAFYLVHL 358
DP Y R LKVAQ+I LIAFIC+ + + + YF C+ ++ L+
Sbjct: 46 DPDYLRGALGRLKVAQVILALIAFICIETIMACSPCEGLYFFEFVSCSAFVVTGVLLIMF 105
Query: 359 -FRLYRVLTCISWPLSEXXXXXXXXXXXXIASIVAASKSYGQSGLVAGAIFGFLATFLCL 535
L+ + I+W L++ IASIV A+ ++ +A IFGFLAT
Sbjct: 106 SLNLHMRIPQINWNLTDLVNTGLSAFLFFIASIVLAALNHRAGAEIAAVIFGFLATAAYA 165
Query: 536 ASVWLS---YKISCVTQSTD 586
+ +L+ +++S QST+
Sbjct: 166 VNTFLAVQKWRVSVRQQSTN 185
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 31,975,354
Number of extensions: 788583
Number of successful extensions: 3121
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3114
Number of HSP's successfully gapped: 5
Length of query: 314
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 212
Effective length of database: 14,934,836
Effective search space: 3166185232
Effective search space used: 3166185232
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014167
(943 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 967 0.0
Sscrofa_Chr13 704 0.0
>Sscrofa_Chr09
|| Length = 153670197
Score = 967 bits (488), Expect = 0.0
Identities = 816/920 (88%), Gaps = 9/920 (0%)
Strand = Plus / Minus
Query: 21 tggccttcggccccggccggaggaggcggcgggcgggcaggggctgcgaaatgtcgcacg 80
||||||| |||||||||| ||||||| |||||||||||||||| |||| |||||
Sbjct: 64204367 tggcctttggccccggccagaggagg-----ggcgggcaggggctgcatgatgttgcacg 64204313
Query: 81 gagctgggctcgttcgcaccacgtgcagcagcggcagctcctcgggacccggtgctggcg 140
|||| ||| || | |||||||| |||||||||||||||||| | |||| |||| |||
Sbjct: 64204312 gagcggggttcatccgcaccacatgcagcagcggcagctcccctagacctggtgttggga 64204253
Query: 141 cggggcagccgggcgcgggctcgtcggaagggctgctggaccccttctacccccgcaccc 200
|||||||| ||| |||||||| | ||||||||||||||||||| |||||||| |||||
Sbjct: 64204252 aggggcagcagggtgcgggctcat-ggaagggctgctggaccccatctacccca-caccc 64204195
Query: 201 acgcggcgctgctgaaagtggcgcagatgatcacactgctgattgccttcatctgtgtga 260
||| ||||||||||||||||||||| ||| ||||||||||||| ||||||||||| ||||
Sbjct: 64204194 acggggcgctgctgaaagtggcgcaaatggtcacactgctgatcgccttcatctgggtga 64204135
Query: 261 ggagctctctgaagatcacctacagtgcctacagctactttgaagtggtcaccatttgca 320
|||| |||| || |||||| |||||||||| |||||| ||||||||||||||||||||||
Sbjct: 64204134 ggagatctcggaggatcacttacagtgcctgcagctagtttgaagtggtcaccatttgca 64204075
Query: 321 acttgatcatgatcctggccttttacctggtccacctcttccgtctctaccgtgtgctca 380
||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||
Sbjct: 64204074 gcttgatcatgatcctggccttttacctggtccacctcttgtgcctctaccgcgtgctca 64204015
Query: 381 cctgtatcagctggcccctatcggagctcctgcactatttaatcggtaccctgctcctcc 440
|||||||||||||||||| |||||||| |||||||||||||||| | |||||||||||
Sbjct: 64204014 cctgtatcagctggcccccatcggagcccctgcactatttaatccggtgcctgctcctcc 64203955
Query: 441 taatcgcatccatcgtggcggcctccaagagtt-acggccagagtggactggtggctgga 499
||||||||||||| |||||| |||||||||||| || ||||||| |||||||||||| |
Sbjct: 64203954 taatcgcatccatggtggcgccctccaagagttaactgccagagcagactggtggctgaa 64203895
Query: 500 gcgatcttcggtttcctggccaccttcctctgcctggcgagcgtgtggttgtcttacaaa 559
|||||||| |||||||||||||||||||||||||||| ||| |||| ||||||| ||
Sbjct: 64203894 gcgatctttagtttcctggccaccttcctctgcctggcaagcatgtgcctgtcttagaag 64203835
Query: 560 atctcgtgtgtgacccagtcaacagatgcagacgtctgatgacgctccagcaccacactg 619
||||| ||||||||||||||||||||||||| | ||||||||| |||||||||||||||
Sbjct: 64203834 atctcatgtgtgacccagtcaacagatgcagccatctgatgaccctccagcaccacactc 64203775
Query: 620 ctccccctggctctgcaggaggccctgcaggaccgatggcccagcccacgggagggtcac 679
||||||||||||||||||||||| |||||||| || |||||||||| |||||| ||
Sbjct: 64203774 ctccccctggctctgcaggaggctctgcaggatgtgtgacccagcccactggaggggcag 64203715
Query: 680 gggcggcggccccaggagagaccagggtctgtgtccctgtgccagatcccctgccggtgg 739
|||| | |||||||||||||||||||| ||||||||| | |||||||||||||| ||||
Sbjct: 64203714 gggcagtggccccaggagagaccagggcctgtgtccccgcaccagatcccctgcccgtgg 64203655
Query: 740 acaagggaggggcttttcctctggctcctaagctgctccagcctctctctccagctttcc 799
||| |||||||||| ||||||||||||||| ||| |||||||||||||||||||| |||
Sbjct: 64203654 acaggggaggggctcttcctctggctcctaggctagtccagcctctctctccagctctcc 64203595
Query: 800 tcatttcttccctgtctggaaaagaaaagcagcctccagggaaatctggtctctccctcc 859
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 64203594 tcacttcttccctgtctggaaaagaaaagcagcctccagggaaatctgatctctccctcc 64203535
Query: 860 tgctttagaactgcctcagggacttgatgaccccgctcaaggtgaaggaggggtttctga 919
||||||||||| ||||||||||||||| |||||| || ||||||| |||||||||||||
Sbjct: 64203534 tgctttagaac-gcctcagggacttgacgaccccacttaaggtgacagaggggtttctga 64203476
Query: 920 attctcctgcggaaacctgc 939
||||||||| ||||||||||
Sbjct: 64203475 attctcctgtggaaacctgc 64203456
>Sscrofa_Chr13
|| Length = 218635234
Score = 704 bits (355), Expect = 0.0
Identities = 361/363 (99%)
Strand = Plus / Minus
Query: 581 acagatgcagacgtctgatgacgctccagcaccacactgctccccctggctctgcaggag 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20400339 acagatgcagacgtctgatgacgctccagcaccacactgctccccctggctctgcaggag 20400280
Query: 641 gccctgcaggaccgatggcccagcccacgggagggtcacgggcggcggccccaggagaga 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20400279 gccctgcaggaccgatggcccagcccacgggagggtcacgggcggcggccccaggagaga 20400220
Query: 701 ccagggtctgtgtccctgtgccagatcccctgccggtggacaagggaggggcttttcctc 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20400219 ccagggtctgtgtccctgtgccagatcccctgccggtggacaagggaggggcttttcctc 20400160
Query: 761 tggctcctaagctgctccagcctctctctccagctttcctcatttcttccctgtctggaa 820
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 20400159 tggctcctaagctgctccagcctctgtctccagctttcctcatttcttccctgtctggaa 20400100
Query: 821 aagaaaagcagcctccagggaaatctggtctctccctcctgctttagaactgcctcaggg 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20400099 aagaaaagcagcctccagggaaatctggtctctccctcctgctttagaactgcctcaggg 20400040
Query: 881 acttgatgaccccgctcaaggtgaaggaggggtttctgaattctcctgcggaaacctgcc 940
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 20400039 acttgatgaccccgctcaaggtgaaggaggggtttctgaattctcccgcggaaacctgcc 20399980
Query: 941 ttt 943
|||
Sbjct: 20399979 ttt 20399977
Score = 420 bits (212), Expect = e-115
Identities = 212/212 (100%)
Strand = Plus / Plus
Query: 18 agctggccttcggccccggccggaggaggcggcgggcgggcaggggctgcgaaatgtcgc 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20374485 agctggccttcggccccggccggaggaggcggcgggcgggcaggggctgcgaaatgtcgc 20374544
Query: 78 acggagctgggctcgttcgcaccacgtgcagcagcggcagctcctcgggacccggtgctg 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20374545 acggagctgggctcgttcgcaccacgtgcagcagcggcagctcctcgggacccggtgctg 20374604
Query: 138 gcgcggggcagccgggcgcgggctcgtcggaagggctgctggaccccttctacccccgca 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20374605 gcgcggggcagccgggcgcgggctcgtcggaagggctgctggaccccttctacccccgca 20374664
Query: 198 cccacgcggcgctgctgaaagtggcgcagatg 229
||||||||||||||||||||||||||||||||
Sbjct: 20374665 cccacgcggcgctgctgaaagtggcgcagatg 20374696
Score = 349 bits (176), Expect = 2e-93
Identities = 176/176 (100%)
Strand = Plus / Minus
Query: 229 gatcacactgctgattgccttcatctgtgtgaggagctctctgaagatcacctacagtgc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20411233 gatcacactgctgattgccttcatctgtgtgaggagctctctgaagatcacctacagtgc 20411174
Query: 289 ctacagctactttgaagtggtcaccatttgcaacttgatcatgatcctggccttttacct 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20411173 ctacagctactttgaagtggtcaccatttgcaacttgatcatgatcctggccttttacct 20411114
Query: 349 ggtccacctcttccgtctctaccgtgtgctcacctgtatcagctggcccctatcgg 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20411113 ggtccacctcttccgtctctaccgtgtgctcacctgtatcagctggcccctatcgg 20411058
Score = 198 bits (100), Expect = 4e-48
Identities = 100/100 (100%)
Strand = Plus / Minus
Query: 403 ggagctcctgcactatttaatcggtaccctgctcctcctaatcgcatccatcgtggcggc 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20405935 ggagctcctgcactatttaatcggtaccctgctcctcctaatcgcatccatcgtggcggc 20405876
Query: 463 ctccaagagttacggccagagtggactggtggctggagcg 502
||||||||||||||||||||||||||||||||||||||||
Sbjct: 20405875 ctccaagagttacggccagagtggactggtggctggagcg 20405836
Score = 157 bits (79), Expect = 1e-35
Identities = 82/83 (98%)
Strand = Plus / Minus
Query: 502 gatcttcggtttcctggccaccttcctctgcctggcgagcgtgtggttgtcttacaaaat 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 20402471 gatcttcggtttcctggccaccttcctctgcctggcgagcgtgtggttgtcttacaagat 20402412
Query: 562 ctcgtgtgtgacccagtcaacag 584
|||||||||||||||||||||||
Sbjct: 20402411 ctcgtgtgtgacccagtcaacag 20402389
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,502,918
Number of extensions: 497
Number of successful extensions: 497
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 492
Number of HSP's successfully gapped: 6
Length of query: 943
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 922
Effective length of database: 2,808,413,156
Effective search space: 2589356929832
Effective search space used: 2589356929832
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)