Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014171
(1071 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_541777.2| PREDICTED: similar to Cell death activator CIDE... 367 e-101
Alignment gi|XP_547681.2| PREDICTED: similar to cell death-inducing DNA f... 169 5e-42
Alignment gi|XP_850561.1| PREDICTED: similar to Cell death activator CIDE... 150 2e-36
Alignment gi|XP_853997.1| PREDICTED: similar to Cell death activator CIDE... 150 2e-36
Alignment gi|XP_848948.1| PREDICTED: similar to Cell death activator CIDE... 131 1e-30
Alignment gi|XP_544574.2| PREDICTED: similar to DNA fragmentation factor ... 50 3e-06
>ref|XP_541777.2| PREDICTED: similar to Cell death activator CIDE-3 (Cell
death-inducing DFFA-like effector protein C)
(Fat-specific protein FSP27 homolog) [Canis familiaris].
Length = 238
Score = 367 bits (942), Expect = e-101
Identities = 181/238 (76%), Positives = 206/238 (86%)
Frame = +3
Query: 183 MEYAMKXXXXXXXXXXXXXAAVSTSVVTQQLLSEPSLEAPRTRPCKVSTADRSVRKGIMA 362
MEYAMK AVSTSVVTQQL S+ SLEAP+ RPC+VSTADRSVRKGI+A
Sbjct: 1 MEYAMKSLSLLYPKSLSRHVAVSTSVVTQQLSSKSSLEAPKARPCRVSTADRSVRKGIIA 60
Query: 363 CGLEDLLLKVQDSLMLADKPFFLVLEEDGTTVETEEYFQSLADDTVFMVLHKGQKWQPPS 542
L+DLL KV+D+L+LADKPF+LVLEEDGTTVETEEYFQ+LADDTVFMVL KGQKWQPP
Sbjct: 61 HSLKDLLNKVRDTLLLADKPFYLVLEEDGTTVETEEYFQALADDTVFMVLQKGQKWQPPQ 120
Query: 543 QQGTRYQLSLSHKPAKKIDVARVTFNLYKVNPQDFIGCLNMKATLYGAYSLSYDLRCFGA 722
+QG+RYQLSLSHKPAKKIDVA+VTF+LYK+NPQDFIGCLN+KATLYG YSLSYDL C+GA
Sbjct: 121 EQGSRYQLSLSHKPAKKIDVAQVTFDLYKMNPQDFIGCLNVKATLYGTYSLSYDLHCYGA 180
Query: 723 KRVMKEVLRWAIFGMQASGHVLLGTSCYLQRLLDTTEGEQPTKGKDPSLIPTCLKILQ 896
KR+MKEVLRWA+F M+ +GHVLLGTSCY+Q+LLD TEG QP +GK SLIPT LK+LQ
Sbjct: 181 KRIMKEVLRWALFSMKTTGHVLLGTSCYMQQLLDATEGGQPPEGKARSLIPTSLKMLQ 238
>ref|XP_547681.2| PREDICTED: similar to cell death-inducing DNA fragmentation factor,
alpha subunit-like effector A [Canis familiaris].
Length = 250
Score = 169 bits (427), Expect = 5e-42
Identities = 86/181 (47%), Positives = 123/181 (67%)
Frame = +3
Query: 309 RPCKVSTADRSVRKGIMACGLEDLLLKVQDSLMLADKPFFLVLEEDGTTVETEEYFQSLA 488
RP +VS DRS R+G+MA L++LL K ++L++ LVLEEDGT V+TE++FQ+L
Sbjct: 66 RPFRVSNHDRSSRRGVMADSLKELLSKTLEALVITSGLVTLVLEEDGTVVDTEDFFQTLG 125
Query: 489 DDTVFMVLHKGQKWQPPSQQGTRYQLSLSHKPAKKIDVARVTFNLYKVNPQDFIGCLNMK 668
D+T FM+L +GQKW P G Y + + + KK +ARVTF+LYK+ P+D IGCLN+K
Sbjct: 126 DNTHFMILEEGQKWTP----GANY--TPARQQPKKAGIARVTFDLYKLTPKDVIGCLNVK 179
Query: 669 ATLYGAYSLSYDLRCFGAKRVMKEVLRWAIFGMQASGHVLLGTSCYLQRLLDTTEGEQPT 848
AT+Y YS+SYD+RC G K +++ +LR Q +G +L+ TS Y+ R+L TE + P
Sbjct: 180 ATMYEMYSVSYDIRCTGVKALLRSLLRLLSHAAQVTGQLLIYTSSYMLRVLGDTEEQAPP 239
Query: 849 K 851
K
Sbjct: 240 K 240
>ref|XP_850561.1| PREDICTED: similar to Cell death activator CIDE-B (Cell
death-inducing DFFA-like effector B) [Canis familiaris].
Length = 221
Score = 150 bits (380), Expect = 2e-36
Identities = 81/178 (45%), Positives = 110/178 (61%)
Frame = +3
Query: 300 PRTRPCKVSTADRSVRKGIMACGLEDLLLKVQDSLMLADKPFFLVLEEDGTTVETEEYFQ 479
P RP +V R+ RKG+ A ++LL K ++L+L+ LVLEEDGT VE+E++FQ
Sbjct: 33 PPQRPFRVCDHKRTTRKGLTAATRQELLDKATEALLLSGM-LTLVLEEDGTAVESEDFFQ 91
Query: 480 SLADDTVFMVLHKGQKWQPPSQQGTRYQLSLSHKPAKKIDVARVTFNLYKVNPQDFIGCL 659
L DDT MVL GQ W P Y L KP D+AR+TF++YK NP+D G L
Sbjct: 92 LLEDDTCLMVLECGQSWSPSRSGMLSYGLG-REKPKHSKDIARITFDVYKQNPRDLFGSL 150
Query: 660 NMKATLYGAYSLSYDLRCFGAKRVMKEVLRWAIFGMQASGHVLLGTSCYLQRLLDTTE 833
N+KAT YG YS+S D + G K+V++E+LRW +Q GH+LLG S L+ L++ E
Sbjct: 151 NVKATFYGLYSMSCDFQGLGPKKVLRELLRWTSALLQGLGHMLLGISSSLRHLVEGAE 208
>ref|XP_853997.1| PREDICTED: similar to Cell death activator CIDE-B (Cell
death-inducing DFFA-like effector B) [Canis familiaris].
Length = 221
Score = 150 bits (379), Expect = 2e-36
Identities = 81/178 (45%), Positives = 109/178 (61%)
Frame = +3
Query: 300 PRTRPCKVSTADRSVRKGIMACGLEDLLLKVQDSLMLADKPFFLVLEEDGTTVETEEYFQ 479
P RP +V R+ RKG+ A ++LL K ++L+L+ LVLEEDGT VE+E++FQ
Sbjct: 33 PPQRPFRVCDHKRTTRKGLTAATRQELLDKATEALLLSGM-LTLVLEEDGTAVESEDFFQ 91
Query: 480 SLADDTVFMVLHKGQKWQPPSQQGTRYQLSLSHKPAKKIDVARVTFNLYKVNPQDFIGCL 659
L DDT MVL GQ W P Y L KP D+AR+TF +YK NP+D G L
Sbjct: 92 LLEDDTCLMVLECGQSWSPSRSGMLSYGLG-REKPKHSKDIARITFEVYKQNPRDLFGSL 150
Query: 660 NMKATLYGAYSLSYDLRCFGAKRVMKEVLRWAIFGMQASGHVLLGTSCYLQRLLDTTE 833
N+KAT YG YS+S D + G K+V++E+LRW +Q GH+LLG S L+ L++ E
Sbjct: 151 NVKATFYGLYSMSCDFQGLGPKKVLRELLRWTSALLQGLGHMLLGISSSLRHLVEGAE 208
>ref|XP_848948.1| PREDICTED: similar to Cell death activator CIDE-B (Cell
death-inducing DFFA-like effector B) [Canis familiaris].
Length = 328
Score = 131 bits (330), Expect = 1e-30
Identities = 72/161 (44%), Positives = 98/161 (60%)
Frame = +3
Query: 351 GIMACGLEDLLLKVQDSLMLADKPFFLVLEEDGTTVETEEYFQSLADDTVFMVLHKGQKW 530
G+ A ++LL K ++L+L+ LVLEEDGT VE+E+ FQ L DDT MVL GQ W
Sbjct: 157 GLTAATRQELLDKATEALLLSGM-LTLVLEEDGTAVESEDCFQLLEDDTCLMVLECGQSW 215
Query: 531 QPPSQQGTRYQLSLSHKPAKKIDVARVTFNLYKVNPQDFIGCLNMKATLYGAYSLSYDLR 710
P Y L KP D+AR+TF++YK P+D G LN+KAT YG YS+S D +
Sbjct: 216 SPSRSGILSYGLG-REKPKHSKDIARITFDVYKQYPRDLFGSLNVKATFYGLYSMSCDFQ 274
Query: 711 CFGAKRVMKEVLRWAIFGMQASGHVLLGTSCYLQRLLDTTE 833
G K+V++E+L W +Q GH+LLG S L+ L++ E
Sbjct: 275 GLGPKKVLRELLHWTSALLQGLGHMLLGISSSLRHLVEGAE 315
>ref|XP_544574.2| PREDICTED: similar to DNA fragmentation factor alpha subunit (DNA
fragmentation factor 45 kDa subunit) (DFF-45) (Inhibitor
of CAD) (ICAD) [Canis familiaris].
Length = 326
Score = 50.4 bits (119), Expect = 3e-06
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Frame = +3
Query: 273 LLSEPSLEAPRTRPCKVSTADRSVRKGIMACGLEDLLLKVQDSLMLADK---PFFLVLEE 443
L+ E +PC + + G+ A LE+L K D L + DK P LVL E
Sbjct: 3 LVGAAEAETRTLKPCVLRRNHSREQHGVAASSLEELRRKACDILAI-DKSLAPVTLVLAE 61
Query: 444 DGTTVETEEYFQSLADDTVFMVLHKGQKWQPPSQQG 551
DGT V+ ++YF L +T F+ L +KW + G
Sbjct: 62 DGTIVDDDDYFLCLPSNTKFVALASNEKWTYNNSDG 97
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,866,062
Number of extensions: 1502402
Number of successful extensions: 5630
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5602
Number of HSP's successfully gapped: 6
Length of query: 357
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 253
Effective length of database: 15,407,560
Effective search space: 3898112680
Effective search space used: 3898112680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014171
(1071 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069499.1| cell death activator CIDE-3 [Bos taurus]. 355 4e-98
Alignment gi|NP_001076918.1| cell death activator CIDE-A [Bos taurus]. 166 3e-41
Alignment gi|NP_001029739.1| cell death activator CIDE-B [Bos taurus]. 159 5e-39
Alignment gi|XP_002697851.1| PREDICTED: cell death-inducing DFFA-like eff... 90 4e-18
Alignment gi|XP_002688183.1| PREDICTED: DNA fragmentation factor, 45kDa, ... 49 6e-06
>ref|NP_001069499.1| cell death activator CIDE-3 [Bos taurus].
Length = 222
Score = 355 bits (911), Expect = 4e-98
Identities = 177/218 (81%), Positives = 195/218 (89%)
Frame = +3
Query: 243 AVSTSVVTQQLLSEPSLEAPRTRPCKVSTADRSVRKGIMACGLEDLLLKVQDSLMLADKP 422
AVSTSVVTQQ LSEPS EAPR RPC+V+TADRSVRKGIM LEDL +KVQD+LMLA +P
Sbjct: 6 AVSTSVVTQQQLSEPSAEAPRARPCRVTTADRSVRKGIMVHSLEDLHVKVQDTLMLAYRP 65
Query: 423 FFLVLEEDGTTVETEEYFQSLADDTVFMVLHKGQKWQPPSQQGTRYQLSLSHKPAKKIDV 602
FFLVLEEDGTTVETEEYFQSLADDTVFMVLHKGQKWQPPS+Q TRYQL+LSHKPA KIDV
Sbjct: 66 FFLVLEEDGTTVETEEYFQSLADDTVFMVLHKGQKWQPPSEQSTRYQLALSHKPA-KIDV 124
Query: 603 ARVTFNLYKVNPQDFIGCLNMKATLYGAYSLSYDLRCFGAKRVMKEVLRWAIFGMQASGH 782
A+VTF+LYKVNPQDFIGCLN+KATLYG YS+SYDL C GAKR+MKE LRWA+F M+ +GH
Sbjct: 125 AQVTFDLYKVNPQDFIGCLNVKATLYGTYSVSYDLHCSGAKRIMKEALRWALFSMRTTGH 184
Query: 783 VLLGTSCYLQRLLDTTEGEQPTKGKDPSLIPTCLKILQ 896
+LLGTSCYLQ+LLD TE EQP K K SLIPT LK+LQ
Sbjct: 185 MLLGTSCYLQQLLDATEREQPPKSKAASLIPTSLKMLQ 222
>ref|NP_001076918.1| cell death activator CIDE-A [Bos taurus].
Length = 219
Score = 166 bits (421), Expect = 3e-41
Identities = 88/200 (44%), Positives = 130/200 (65%)
Frame = +3
Query: 264 TQQLLSEPSLEAPRTRPCKVSTADRSVRKGIMACGLEDLLLKVQDSLMLADKPFFLVLEE 443
T+++L P + RP +VS DRS R+G+MA L++LL K D+L++A + LVLEE
Sbjct: 22 TKKVLFTPFMHP--ARPFRVSNHDRSSRRGVMASSLQELLSKTLDALVVASQLVTLVLEE 79
Query: 444 DGTTVETEEYFQSLADDTVFMVLHKGQKWQPPSQQGTRYQLSLSHKPAKKIDVARVTFNL 623
DGT V+TEE+FQ+L D+T MVL +GQKW P Q + + +P ++ +A+VTF+L
Sbjct: 80 DGTVVDTEEFFQTLGDNTHLMVLEQGQKWTPAGHQ------TPARRPPQRRGIAKVTFDL 133
Query: 624 YKVNPQDFIGCLNMKATLYGAYSLSYDLRCFGAKRVMKEVLRWAIFGMQASGHVLLGTSC 803
YK++P+D IGCLN+KAT+Y YS+SYD+ C G K +++ +LR+ Q +G L+
Sbjct: 134 YKLSPKDVIGCLNVKATMYEMYSVSYDIHCTGFKAMLRSLLRFLSHAAQVTGQCLIHMGT 193
Query: 804 YLQRLLDTTEGEQPTKGKDP 863
Y+ R+L TE EQ G P
Sbjct: 194 YMLRVLAETE-EQAVPGSRP 212
>ref|NP_001029739.1| cell death activator CIDE-B [Bos taurus].
Length = 219
Score = 159 bits (401), Expect = 5e-39
Identities = 85/178 (47%), Positives = 115/178 (64%)
Frame = +3
Query: 300 PRTRPCKVSTADRSVRKGIMACGLEDLLLKVQDSLMLADKPFFLVLEEDGTTVETEEYFQ 479
PR RP +V R+ RKG+ A ++LL K ++L+L+ LVLEEDGTTVE+EE+FQ
Sbjct: 33 PRQRPFRVCDNKRTTRKGLTAATRQELLDKALEALVLSGA-LTLVLEEDGTTVESEEFFQ 91
Query: 480 SLADDTVFMVLHKGQKWQPPSQQGTRYQLSLSHKPAKKIDVARVTFNLYKVNPQDFIGCL 659
L DDT MVL GQ W P Y L KP D+AR+TF++YK +P+D G L
Sbjct: 92 LLEDDTCLMVLELGQSWSPRRSGVLSYGLG-QEKPKHSKDIARITFDVYKQSPRDLFGSL 150
Query: 660 NMKATLYGAYSLSYDLRCFGAKRVMKEVLRWAIFGMQASGHVLLGTSCYLQRLLDTTE 833
N+KAT YG YSLS D++ G K++++E+LRWA +Q GH+LLG S L+R ++ TE
Sbjct: 151 NIKATFYGLYSLSCDIQGLGPKKILRELLRWASSLLQGLGHMLLGISSTLRRAVEGTE 208
>ref|XP_002697851.1| PREDICTED: cell death-inducing DFFA-like effector a-like [Bos
taurus].
Length = 280
Score = 89.7 bits (221), Expect = 4e-18
Identities = 46/91 (50%), Positives = 64/91 (70%)
Frame = +3
Query: 264 TQQLLSEPSLEAPRTRPCKVSTADRSVRKGIMACGLEDLLLKVQDSLMLADKPFFLVLEE 443
T+++L P + RP +VS DRS R+G+MA L++LL K D+L++A + LVLEE
Sbjct: 22 TKKVLFTPFMHP--ARPFRVSNHDRSSRRGVMASSLQELLSKTLDALVVASQLVTLVLEE 79
Query: 444 DGTTVETEEYFQSLADDTVFMVLHKGQKWQP 536
DGT V+TEE+FQ+L D+T MVL +GQKW P
Sbjct: 80 DGTVVDTEEFFQTLGDNTHLMVLEQGQKWTP 110
>ref|XP_002688183.1| PREDICTED: DNA fragmentation factor, 45kDa, alpha polypeptide-like
[Bos taurus].
Length = 266
Score = 49.3 bits (116), Expect = 6e-06
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Frame = +3
Query: 270 QLLSEPSLEAP----RTRPCKVSTADRSVRKGIMACGLEDLLLKVQDSLML--ADKPFFL 431
++ S P+ P + C + + + G+ A LE+L K D L + + P L
Sbjct: 2 EVASSPAAPEPGEIWALKQCLLRCNNSREQHGMAASCLEELRNKASDILAIDKSQAPVTL 61
Query: 432 VLEEDGTTVETEEYFQSLADDTVFMVLHKGQKWQPPSQQGTRY 560
VLEEDGT V+ +YF L +T F+ L +KW S GT +
Sbjct: 62 VLEEDGTIVDDYDYFLCLPANTKFVALAGNEKWTHNSDGGTAW 104
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 47,080,611
Number of extensions: 1471032
Number of successful extensions: 5848
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5825
Number of HSP's successfully gapped: 5
Length of query: 357
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 254
Effective length of database: 14,273,310
Effective search space: 3625420740
Effective search space used: 3625420740
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014171
(1071 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001106159.1| cell death activator CIDE-3 [Sus scrofa]. 445 e-125
Alignment gi|NP_001106166.1| cell death activator CIDE-A [Sus scrofa]. 164 6e-41
Alignment gi|NP_001106158.1| cell-death-inducing DNA-fragmentation-factor... 152 4e-37
>ref|NP_001106159.1| cell death activator CIDE-3 [Sus scrofa].
Length = 238
Score = 445 bits (1145), Expect = e-125
Identities = 224/238 (94%), Positives = 225/238 (94%)
Frame = +3
Query: 183 MEYAMKXXXXXXXXXXXXXAAVSTSVVTQQLLSEPSLEAPRTRPCKVSTADRSVRKGIMA 362
MEYAMK AAVSTSVVTQQLLSEPSLEAPRTRPCKVSTADRSVRKGIMA
Sbjct: 1 MEYAMKSLSLLYPRSLSRYAAVSTSVVTQQLLSEPSLEAPRTRPCKVSTADRSVRKGIMA 60
Query: 363 CGLEDLLLKVQDSLMLADKPFFLVLEEDGTTVETEEYFQSLADDTVFMVLHKGQKWQPPS 542
CGLEDLLLKV+DSLMLADKPFFLVLEEDGTTVETEEYFQSLADDTVFMVLHKGQKWQPPS
Sbjct: 61 CGLEDLLLKVRDSLMLADKPFFLVLEEDGTTVETEEYFQSLADDTVFMVLHKGQKWQPPS 120
Query: 543 QQGTRYQLSLSHKPAKKIDVARVTFNLYKVNPQDFIGCLNMKATLYGAYSLSYDLRCFGA 722
QQGTRYQLSLSHKPAKKIDVARVTFNLYKVNPQDFIGCLNMKATLYGAYSLSYDLRCFGA
Sbjct: 121 QQGTRYQLSLSHKPAKKIDVARVTFNLYKVNPQDFIGCLNMKATLYGAYSLSYDLRCFGA 180
Query: 723 KRVMKEVLRWAIFGMQASGHVLLGTSCYLQRLLDTTEGEQPTKGKDPSLIPTCLKILQ 896
KRVMKEVLRWAIFGMQASGHVLLGTSCYLQRLLDTTEGEQPTKGKDPSLIPTCLKILQ
Sbjct: 181 KRVMKEVLRWAIFGMQASGHVLLGTSCYLQRLLDTTEGEQPTKGKDPSLIPTCLKILQ 238
>ref|NP_001106166.1| cell death activator CIDE-A [Sus scrofa].
Length = 219
Score = 164 bits (416), Expect = 6e-41
Identities = 93/200 (46%), Positives = 129/200 (64%)
Frame = +3
Query: 264 TQQLLSEPSLEAPRTRPCKVSTADRSVRKGIMACGLEDLLLKVQDSLMLADKPFFLVLEE 443
T+++L P + RP +VS +RS R+G+ A L++ L K D+L++A + LVLEE
Sbjct: 22 TRKVLLTPLMHP--ARPFRVSNHNRSSRRGVTASSLQEPLSKTLDALVIASRVVTLVLEE 79
Query: 444 DGTTVETEEYFQSLADDTVFMVLHKGQKWQPPSQQGTRYQLSLSHKPAKKIDVARVTFNL 623
DGT V+TEE+FQ L D+T FMVL KGQKW P GT + KP K+ +ARVTF+L
Sbjct: 80 DGTVVDTEEFFQMLGDNTHFMVLEKGQKWTPA---GT--YIPAPQKP-KRSGIARVTFDL 133
Query: 624 YKVNPQDFIGCLNMKATLYGAYSLSYDLRCFGAKRVMKEVLRWAIFGMQASGHVLLGTSC 803
YK+NP+D IGCLN+KAT+Y YS+SYD+RC G K +++ +LR+ Q +G L+
Sbjct: 134 YKLNPKDVIGCLNVKATMYEMYSVSYDIRCTGLKALLRSLLRFLSHTAQVTGQCLIYMGT 193
Query: 804 YLQRLLDTTEGEQPTKGKDP 863
Y+ R+L TE EQ G P
Sbjct: 194 YMLRMLADTE-EQAVPGVRP 212
>ref|NP_001106158.1| cell-death-inducing DNA-fragmentation-factor-like effector B [Sus
scrofa].
Length = 219
Score = 152 bits (383), Expect = 4e-37
Identities = 81/178 (45%), Positives = 112/178 (62%)
Frame = +3
Query: 300 PRTRPCKVSTADRSVRKGIMACGLEDLLLKVQDSLMLADKPFFLVLEEDGTTVETEEYFQ 479
P RP ++ R+ RKG+ A ++LL K +LML + LVLEEDGT VE+E++FQ
Sbjct: 33 PPQRPFRICDHKRTTRKGLTAATRQELLDKALGTLML-NGVLTLVLEEDGTMVESEDFFQ 91
Query: 480 SLADDTVFMVLHKGQKWQPPSQQGTRYQLSLSHKPAKKIDVARVTFNLYKVNPQDFIGCL 659
L DDT MVL GQKW+P Y L KP D+AR+TF++YK NP+D G L
Sbjct: 92 LLEDDTCLMVLELGQKWRPRKSGVLSYGLG-REKPKHSQDIARITFDVYKQNPRDLFGSL 150
Query: 660 NMKATLYGAYSLSYDLRCFGAKRVMKEVLRWAIFGMQASGHVLLGTSCYLQRLLDTTE 833
N+KAT YG YS+S D++ G K++++E+LRWA +Q GHVLLG S ++ ++ E
Sbjct: 151 NIKATFYGLYSMSCDIQGLGPKKILRELLRWASALLQGLGHVLLGISSTIRHAVEGAE 208
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,396,395
Number of extensions: 949503
Number of successful extensions: 3711
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3696
Number of HSP's successfully gapped: 3
Length of query: 357
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 257
Effective length of database: 8,854,232
Effective search space: 2275537624
Effective search space used: 2275537624
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014171
(1071 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_848460.1| cell death activator CIDE-3 [Mus musculus]. 327 7e-90
Alignment gi|NP_031728.2| cell death activator CIDE-A [Mus musculus]. 169 3e-42
Alignment gi|NP_034024.2| cell death activator CIDE-B [Mus musculus]. 152 3e-37
>ref|NP_848460.1| cell death activator CIDE-3 [Mus musculus].
Length = 239
Score = 327 bits (839), Expect = 7e-90
Identities = 166/239 (69%), Positives = 190/239 (79%), Gaps = 1/239 (0%)
Frame = +3
Query: 183 MEYAMKXXXXXXXXXXXXXAAVSTSVVTQQLLSEPSLEAPRTRPCKVSTADRSVRKGIMA 362
M+YAMK AVST+VVTQQL+S+PS E PR RPC+VSTADR VRKGIMA
Sbjct: 1 MDYAMKSLSLLYPRSLSRHVAVSTAVVTQQLVSKPSRETPRARPCRVSTADRKVRKGIMA 60
Query: 363 CGLEDLLLKVQDSLMLADKPFFLVLEEDGTTVETEEYFQSLADDTVFMVLHKGQKWQPPS 542
LEDLL KVQD L L DKPF LVLEEDGT VETEEYFQ+LA DT+FMVL KGQKW+PPS
Sbjct: 61 HSLEDLLNKVQDILKLKDKPFSLVLEEDGTIVETEEYFQALAKDTMFMVLLKGQKWKPPS 120
Query: 543 QQGT-RYQLSLSHKPAKKIDVARVTFNLYKVNPQDFIGCLNMKATLYGAYSLSYDLRCFG 719
+Q R QL+LS KP KKIDVARVTF+LYK+NPQDFIGCLN+KATLY YSLSYDL C+
Sbjct: 121 EQRKKRAQLALSQKPTKKIDVARVTFDLYKLNPQDFIGCLNVKATLYDTYSLSYDLHCYK 180
Query: 720 AKRVMKEVLRWAIFGMQASGHVLLGTSCYLQRLLDTTEGEQPTKGKDPSLIPTCLKILQ 896
AKR++KE+LRW +F MQA+GH+LLGTS Y+Q+ LD TE EQP K K SL+P CLK+LQ
Sbjct: 181 AKRIVKEMLRWTLFSMQATGHMLLGTSSYMQQFLDATEEEQPAKAKPSSLLPACLKMLQ 239
>ref|NP_031728.2| cell death activator CIDE-A [Mus musculus].
Length = 217
Score = 169 bits (429), Expect = 3e-42
Identities = 91/195 (46%), Positives = 133/195 (68%)
Frame = +3
Query: 264 TQQLLSEPSLEAPRTRPCKVSTADRSVRKGIMACGLEDLLLKVQDSLMLADKPFFLVLEE 443
T+++L P + RP +VS DRS R+G+MA L++L+ K D L++ LVLEE
Sbjct: 22 TKKVLLTPLIHP--ARPFRVSNHDRSSRRGVMASSLQELISKTLDVLVITTGLVTLVLEE 79
Query: 444 DGTTVETEEYFQSLADDTVFMVLHKGQKWQPPSQQGTRYQLSLSHKPAKKIDVARVTFNL 623
DGT V+TEE+FQ+L D+T FM+L KGQKW P G++Y + + +P KK +ARVTF+L
Sbjct: 80 DGTVVDTEEFFQTLRDNTHFMILEKGQKWTP----GSKY-VPVCKQP-KKSGIARVTFDL 133
Query: 624 YKVNPQDFIGCLNMKATLYGAYSLSYDLRCFGAKRVMKEVLRWAIFGMQASGHVLLGTSC 803
Y++NP+DF+GCLN+KAT+Y YS+SYD+RC K V++ +LR+ + Q +G L+
Sbjct: 134 YRLNPKDFLGCLNVKATMYEMYSVSYDIRCTSFKAVLRNLLRFMSYAAQMTGQFLVYAGT 193
Query: 804 YLQRLLDTTEGEQPT 848
Y+ R+L TE EQP+
Sbjct: 194 YMLRVLGDTE-EQPS 207
>ref|NP_034024.2| cell death activator CIDE-B [Mus musculus].
Length = 219
Score = 152 bits (385), Expect = 3e-37
Identities = 83/175 (47%), Positives = 113/175 (64%)
Frame = +3
Query: 300 PRTRPCKVSTADRSVRKGIMACGLEDLLLKVQDSLMLADKPFFLVLEEDGTTVETEEYFQ 479
P RP +V R+VRKG+ A L++LL KV ++L+L LVLEEDGT V++E++FQ
Sbjct: 33 PPQRPFRVCDHKRTVRKGLTAASLQELLDKVLETLLLRGV-LTLVLEEDGTAVDSEDFFQ 91
Query: 480 SLADDTVFMVLHKGQKWQPPSQQGTRYQLSLSHKPAKKIDVARVTFNLYKVNPQDFIGCL 659
L DDT MVL +GQ W P S Y L KP D+AR+TF++YK NP+D G L
Sbjct: 92 LLEDDTCLMVLEQGQSWSPKSGM-LSYGLG-REKPKHSKDIARITFDVYKQNPRDLFGSL 149
Query: 660 NMKATLYGAYSLSYDLRCFGAKRVMKEVLRWAIFGMQASGHVLLGTSCYLQRLLD 824
N+KAT YG YS+S D + G KRV++E+LRW +Q GH+LLG S L+ +++
Sbjct: 150 NVKATFYGLYSMSCDFQGVGPKRVLRELLRWTSSLLQGLGHMLLGISSTLRHVVE 204
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,670,792
Number of extensions: 1237066
Number of successful extensions: 4529
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4515
Number of HSP's successfully gapped: 3
Length of query: 357
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 255
Effective length of database: 12,553,887
Effective search space: 3201241185
Effective search space used: 3201241185
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014171
(1071 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001186552.1| cell death activator CIDE-3 isoform 1 [Homo ... 385 e-107
Alignment gi|NP_001186481.1| cell death activator CIDE-3 isoform 3 [Homo ... 372 e-103
Alignment gi|NP_071377.2| cell death activator CIDE-3 isoform 3 [Homo sap... 372 e-103
Alignment gi|NP_001186480.1| cell death activator CIDE-3 isoform 2 [Homo ... 364 e-101
Alignment gi|NP_001270.1| cell death activator CIDE-A isoform 1 [Homo sap... 175 6e-44
Alignment gi|NP_055245.2| cell death activator CIDE-B [Homo sapiens]. 147 2e-35
Alignment gi|NP_998731.1| DNA fragmentation factor subunit alpha isoform ... 49 8e-06
Alignment gi|NP_004392.1| DNA fragmentation factor subunit alpha isoform ... 49 8e-06
>ref|NP_001186552.1| cell death activator CIDE-3 isoform 1 [Homo sapiens].
Length = 251
Score = 385 bits (989), Expect = e-107
Identities = 194/245 (79%), Positives = 209/245 (85%)
Frame = +3
Query: 162 NAVQLTRMEYAMKXXXXXXXXXXXXXAAVSTSVVTQQLLSEPSLEAPRTRPCKVSTADRS 341
NAVQLTRMEYAMK +V TSVVTQQLLSEPS +APR RPC+VSTADRS
Sbjct: 7 NAVQLTRMEYAMKSLSLLYPKSLSRHVSVRTSVVTQQLLSEPSPKAPRARPCRVSTADRS 66
Query: 342 VRKGIMACGLEDLLLKVQDSLMLADKPFFLVLEEDGTTVETEEYFQSLADDTVFMVLHKG 521
VRKGIMA LEDLLLKV+D+LMLADKPFFLVLEEDGTTVETEEYFQ+LA DTVFMVL KG
Sbjct: 67 VRKGIMAYSLEDLLLKVRDTLMLADKPFFLVLEEDGTTVETEEYFQALAGDTVFMVLQKG 126
Query: 522 QKWQPPSQQGTRYQLSLSHKPAKKIDVARVTFNLYKVNPQDFIGCLNMKATLYGAYSLSY 701
QKWQPPS+QGTR+ LSLSHKPAKKIDVARVTF+LYK+NPQDFIGCLN+KAT Y YSLSY
Sbjct: 127 QKWQPPSEQGTRHPLSLSHKPAKKIDVARVTFDLYKLNPQDFIGCLNVKATFYDTYSLSY 186
Query: 702 DLRCFGAKRVMKEVLRWAIFGMQASGHVLLGTSCYLQRLLDTTEGEQPTKGKDPSLIPTC 881
DL C GAKR+MKE RWA+F MQA+GHVLLGTSCYLQ+LLD TE QP KGK SLIPTC
Sbjct: 187 DLHCCGAKRIMKEAFRWALFSMQATGHVLLGTSCYLQQLLDATEEGQPPKGKASSLIPTC 246
Query: 882 LKILQ 896
LKILQ
Sbjct: 247 LKILQ 251
>ref|NP_001186481.1| cell death activator CIDE-3 isoform 3 [Homo sapiens].
Length = 238
Score = 372 bits (956), Expect = e-103
Identities = 187/238 (78%), Positives = 202/238 (84%)
Frame = +3
Query: 183 MEYAMKXXXXXXXXXXXXXAAVSTSVVTQQLLSEPSLEAPRTRPCKVSTADRSVRKGIMA 362
MEYAMK +V TSVVTQQLLSEPS +APR RPC+VSTADRSVRKGIMA
Sbjct: 1 MEYAMKSLSLLYPKSLSRHVSVRTSVVTQQLLSEPSPKAPRARPCRVSTADRSVRKGIMA 60
Query: 363 CGLEDLLLKVQDSLMLADKPFFLVLEEDGTTVETEEYFQSLADDTVFMVLHKGQKWQPPS 542
LEDLLLKV+D+LMLADKPFFLVLEEDGTTVETEEYFQ+LA DTVFMVL KGQKWQPPS
Sbjct: 61 YSLEDLLLKVRDTLMLADKPFFLVLEEDGTTVETEEYFQALAGDTVFMVLQKGQKWQPPS 120
Query: 543 QQGTRYQLSLSHKPAKKIDVARVTFNLYKVNPQDFIGCLNMKATLYGAYSLSYDLRCFGA 722
+QGTR+ LSLSHKPAKKIDVARVTF+LYK+NPQDFIGCLN+KAT Y YSLSYDL C GA
Sbjct: 121 EQGTRHPLSLSHKPAKKIDVARVTFDLYKLNPQDFIGCLNVKATFYDTYSLSYDLHCCGA 180
Query: 723 KRVMKEVLRWAIFGMQASGHVLLGTSCYLQRLLDTTEGEQPTKGKDPSLIPTCLKILQ 896
KR+MKE RWA+F MQA+GHVLLGTSCYLQ+LLD TE QP KGK SLIPTCLKILQ
Sbjct: 181 KRIMKEAFRWALFSMQATGHVLLGTSCYLQQLLDATEEGQPPKGKASSLIPTCLKILQ 238
>ref|NP_071377.2| cell death activator CIDE-3 isoform 3 [Homo sapiens].
Length = 238
Score = 372 bits (956), Expect = e-103
Identities = 187/238 (78%), Positives = 202/238 (84%)
Frame = +3
Query: 183 MEYAMKXXXXXXXXXXXXXAAVSTSVVTQQLLSEPSLEAPRTRPCKVSTADRSVRKGIMA 362
MEYAMK +V TSVVTQQLLSEPS +APR RPC+VSTADRSVRKGIMA
Sbjct: 1 MEYAMKSLSLLYPKSLSRHVSVRTSVVTQQLLSEPSPKAPRARPCRVSTADRSVRKGIMA 60
Query: 363 CGLEDLLLKVQDSLMLADKPFFLVLEEDGTTVETEEYFQSLADDTVFMVLHKGQKWQPPS 542
LEDLLLKV+D+LMLADKPFFLVLEEDGTTVETEEYFQ+LA DTVFMVL KGQKWQPPS
Sbjct: 61 YSLEDLLLKVRDTLMLADKPFFLVLEEDGTTVETEEYFQALAGDTVFMVLQKGQKWQPPS 120
Query: 543 QQGTRYQLSLSHKPAKKIDVARVTFNLYKVNPQDFIGCLNMKATLYGAYSLSYDLRCFGA 722
+QGTR+ LSLSHKPAKKIDVARVTF+LYK+NPQDFIGCLN+KAT Y YSLSYDL C GA
Sbjct: 121 EQGTRHPLSLSHKPAKKIDVARVTFDLYKLNPQDFIGCLNVKATFYDTYSLSYDLHCCGA 180
Query: 723 KRVMKEVLRWAIFGMQASGHVLLGTSCYLQRLLDTTEGEQPTKGKDPSLIPTCLKILQ 896
KR+MKE RWA+F MQA+GHVLLGTSCYLQ+LLD TE QP KGK SLIPTCLKILQ
Sbjct: 181 KRIMKEAFRWALFSMQATGHVLLGTSCYLQQLLDATEEGQPPKGKASSLIPTCLKILQ 238
>ref|NP_001186480.1| cell death activator CIDE-3 isoform 2 [Homo sapiens].
Length = 248
Score = 364 bits (935), Expect = e-101
Identities = 187/248 (75%), Positives = 202/248 (81%), Gaps = 10/248 (4%)
Frame = +3
Query: 183 MEYAMKXXXXXXXXXXXXXAAVSTSVVTQQLLSEPSLEAPRTRPCKVSTADRSVRKGIMA 362
MEYAMK +V TSVVTQQLLSEPS +APR RPC+VSTADRSVRKGIMA
Sbjct: 1 MEYAMKSLSLLYPKSLSRHVSVRTSVVTQQLLSEPSPKAPRARPCRVSTADRSVRKGIMA 60
Query: 363 CGLEDLLLK----------VQDSLMLADKPFFLVLEEDGTTVETEEYFQSLADDTVFMVL 512
LEDLLLK V+D+LMLADKPFFLVLEEDGTTVETEEYFQ+LA DTVFMVL
Sbjct: 61 YSLEDLLLKTRNPEARSQEVRDTLMLADKPFFLVLEEDGTTVETEEYFQALAGDTVFMVL 120
Query: 513 HKGQKWQPPSQQGTRYQLSLSHKPAKKIDVARVTFNLYKVNPQDFIGCLNMKATLYGAYS 692
KGQKWQPPS+QGTR+ LSLSHKPAKKIDVARVTF+LYK+NPQDFIGCLN+KAT Y YS
Sbjct: 121 QKGQKWQPPSEQGTRHPLSLSHKPAKKIDVARVTFDLYKLNPQDFIGCLNVKATFYDTYS 180
Query: 693 LSYDLRCFGAKRVMKEVLRWAIFGMQASGHVLLGTSCYLQRLLDTTEGEQPTKGKDPSLI 872
LSYDL C GAKR+MKE RWA+F MQA+GHVLLGTSCYLQ+LLD TE QP KGK SLI
Sbjct: 181 LSYDLHCCGAKRIMKEAFRWALFSMQATGHVLLGTSCYLQQLLDATEEGQPPKGKASSLI 240
Query: 873 PTCLKILQ 896
PTCLKILQ
Sbjct: 241 PTCLKILQ 248
>ref|NP_001270.1| cell death activator CIDE-A isoform 1 [Homo sapiens].
Length = 219
Score = 175 bits (444), Expect = 6e-44
Identities = 91/195 (46%), Positives = 132/195 (67%)
Frame = +3
Query: 264 TQQLLSEPSLEAPRTRPCKVSTADRSVRKGIMACGLEDLLLKVQDSLMLADKPFFLVLEE 443
T+++L P + RP +VS DRS R+G+MA L++L+ K D+L++A LVLEE
Sbjct: 22 TKRVLFTPLMHP--ARPFRVSNHDRSSRRGVMASSLQELISKTLDALVIATGLVTLVLEE 79
Query: 444 DGTTVETEEYFQSLADDTVFMVLHKGQKWQPPSQQGTRYQLSLSHKPAKKIDVARVTFNL 623
DGT V+TEE+FQ+L D+T FM+L KGQKW P SQ + P K+ +ARVTF+L
Sbjct: 80 DGTVVDTEEFFQTLGDNTHFMILEKGQKWMPGSQHVP------TCSPPKRSGIARVTFDL 133
Query: 624 YKVNPQDFIGCLNMKATLYGAYSLSYDLRCFGAKRVMKEVLRWAIFGMQASGHVLLGTSC 803
Y++NP+DFIGCLN+KAT+Y YS+SYD+RC G K +++ +LR+ + Q +G L+
Sbjct: 134 YRLNPKDFIGCLNVKATMYEMYSVSYDIRCTGLKGLLRSLLRFLSYSAQVTGQFLIYLGT 193
Query: 804 YLQRLLDTTEGEQPT 848
Y+ R+LD E E+P+
Sbjct: 194 YMLRVLDDKE-ERPS 207
>ref|NP_055245.2| cell death activator CIDE-B [Homo sapiens].
Length = 219
Score = 147 bits (371), Expect = 2e-35
Identities = 78/178 (43%), Positives = 109/178 (61%)
Frame = +3
Query: 300 PRTRPCKVSTADRSVRKGIMACGLEDLLLKVQDSLMLADKPFFLVLEEDGTTVETEEYFQ 479
P RP +V R++RKG+ A ++LL K ++L+L + LVLEEDGT V++E++FQ
Sbjct: 33 PPQRPFRVCDHKRTIRKGLTAATRQELLAKALETLLL-NGVLTLVLEEDGTAVDSEDFFQ 91
Query: 480 SLADDTVFMVLHKGQKWQPPSQQGTRYQLSLSHKPAKKIDVARVTFNLYKVNPQDFIGCL 659
L DDT MVL GQ W P Y L +P D+AR TF++YK NP+D G L
Sbjct: 92 LLEDDTCLMVLQSGQSWSPTRSGVLSYGLG-RERPKHSKDIARFTFDVYKQNPRDLFGSL 150
Query: 660 NMKATLYGAYSLSYDLRCFGAKRVMKEVLRWAIFGMQASGHVLLGTSCYLQRLLDTTE 833
N+KAT YG YS+S D + G K+V++E+LRW +Q GH+LLG S L+ ++ E
Sbjct: 151 NVKATFYGLYSMSCDFQGLGPKKVLRELLRWTSTLLQGLGHMLLGISSTLRHAVEGAE 208
>ref|NP_998731.1| DNA fragmentation factor subunit alpha isoform 2 [Homo sapiens].
Length = 268
Score = 48.9 bits (115), Expect = 8e-06
Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Frame = +3
Query: 309 RPCKVSTADRSVRKGIMACGLEDLLLKVQDSLMLADK---PFFLVLEEDGTTVETEEYFQ 479
+PC + + G+ A LEDL K D L + DK P LVL EDGT V+ ++YF
Sbjct: 19 KPCLLRRNYSREQHGVAASCLEDLRSKACDILAI-DKSLTPVTLVLAEDGTIVDDDDYFL 77
Query: 480 SLADDTVFMVLHKGQKWQPPSQQG 551
L +T F+ L +KW + G
Sbjct: 78 CLPSNTKFVALASNEKWAYNNSDG 101
>ref|NP_004392.1| DNA fragmentation factor subunit alpha isoform 1 [Homo sapiens].
Length = 331
Score = 48.9 bits (115), Expect = 8e-06
Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Frame = +3
Query: 309 RPCKVSTADRSVRKGIMACGLEDLLLKVQDSLMLADK---PFFLVLEEDGTTVETEEYFQ 479
+PC + + G+ A LEDL K D L + DK P LVL EDGT V+ ++YF
Sbjct: 19 KPCLLRRNYSREQHGVAASCLEDLRSKACDILAI-DKSLTPVTLVLAEDGTIVDDDDYFL 77
Query: 480 SLADDTVFMVLHKGQKWQPPSQQG 551
L +T F+ L +KW + G
Sbjct: 78 CLPSNTKFVALASNEKWAYNNSDG 101
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 48,098,723
Number of extensions: 1480742
Number of successful extensions: 5683
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 5664
Number of HSP's successfully gapped: 8
Length of query: 357
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 253
Effective length of database: 14,868,908
Effective search space: 3761833724
Effective search space used: 3761833724
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014171
(1071 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 581 e-163
>Sscrofa_Chr13
|| Length = 218635234
Score = 581 bits (293), Expect = e-163
Identities = 329/337 (97%), Gaps = 3/337 (0%)
Strand = Plus / Minus
Query: 737 agaagttcttcgctgggccatctttggcatgcaagcctcaggccacgtgctgcttggcac 796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73217582 agaagttcttcgctgggccatctttggcatgcaagcctcaggccacgtgctgcttggcac 73217523
Query: 797 ctcctgttacctgcagcggctcctggataccactgagggggaacaacccaccaagggcaa 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73217522 ctcctgttacctgcagcggctcctggataccactgagggggaacaacccaccaagggcaa 73217463
Query: 857 agacccatccctcatcccgacctgtctgaagatactgcagtgaaagaatagccaaggact 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73217462 agacccatccctcatcccgacctgtctgaagatactgcagtgaaagaatagccaaggact 73217403
Query: 917 agagttggcatcccatgctcagctggtagcacccacaagactggcagctagagagcttct 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73217402 agagttggcatcccatgctcagctggtagcacccacaagactggcagctagagagcttct 73217343
Query: 977 caccatcccacaccccctgacccccacaggaacatgaatgaagaaacagggggaa-ggct 1035
||||||||||||||||||||||||||||||| ||||||||| ||| || |||||| ||||
Sbjct: 73217342 caccatcccacaccccctgacccccacaggaccatgaatgaggaagcaaggggaagggct 73217283
Query: 1036 gg-aatctgggctgggtt-gcccaaggaaaactgagg 1070
|| ||||||||||||||| ||| ||||||||||||||
Sbjct: 73217282 ggaaatctgggctgggttggccaaaggaaaactgagg 73217246
Score = 379 bits (191), Expect = e-102
Identities = 191/191 (100%)
Strand = Plus / Minus
Query: 546 cagggcactaggtaccaactctccctctcccataagcctgccaagaagatcgatgtggcc 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73219716 cagggcactaggtaccaactctccctctcccataagcctgccaagaagatcgatgtggcc 73219657
Query: 606 cgtgtaaccttcaacctgtacaaggtgaacccacaggacttcattggttgcctgaacatg 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73219656 cgtgtaaccttcaacctgtacaaggtgaacccacaggacttcattggttgcctgaacatg 73219597
Query: 666 aaggcgactctctacggtgcctactccctttcctacgatctgcgctgctttggggccaaa 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73219596 aaggcgactctctacggtgcctactccctttcctacgatctgcgctgctttggggccaaa 73219537
Query: 726 cgtgtcatgaa 736
|||||||||||
Sbjct: 73219536 cgtgtcatgaa 73219526
Score = 317 bits (160), Expect = 7e-84
Identities = 166/168 (98%)
Strand = Plus / Minus
Query: 382 tcctcaaggtccaggacagtctgatgctggcagacaagcctttctttctggtgctggagg 441
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73219963 tcctctaggtccgggacagtctgatgctggcagacaagcctttctttctggtgctggagg 73219904
Query: 442 aagatggcacaactgtagagacagaagagtatttccaatccctggcagatgacaccgtgt 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73219903 aagatggcacaactgtagagacagaagagtatttccaatccctggcagatgacaccgtgt 73219844
Query: 502 tcatggttcttcataaggggcagaaatggcagcccccatcacagcagg 549
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73219843 tcatggttcttcataaggggcagaaatggcagcccccatcacagcagg 73219796
Score = 317 bits (160), Expect = 7e-84
Identities = 160/160 (100%)
Strand = Plus / Minus
Query: 232 ccaggtatgcagcagtaagcacctcggtggtgacacagcagctgctgtcggagcccagcc 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73222303 ccaggtatgcagcagtaagcacctcggtggtgacacagcagctgctgtcggagcccagcc 73222244
Query: 292 tggaggcccccaggacccggccctgcaaagtaagcaccgctgaccggagtgtgcggaagg 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73222243 tggaggcccccaggacccggccctgcaaagtaagcaccgctgaccggagtgtgcggaagg 73222184
Query: 352 gcatcatggcatgcgggcttgaggacctcctcctcaaggt 391
||||||||||||||||||||||||||||||||||||||||
Sbjct: 73222183 gcatcatggcatgcgggcttgaggacctcctcctcaaggt 73222144
Score = 313 bits (158), Expect = 1e-82
Identities = 158/158 (100%)
Strand = Plus / Minus
Query: 1 tggcttgaaatcccaagggcaagagctgcacacttactgcctgtgctccttcccagctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73224869 tggcttgaaatcccaagggcaagagctgcacacttactgcctgtgctccttcccagctgg 73224810
Query: 61 ggctgagggccacgggaggggcaactctggaaataaagtggaaggagggctgggctgagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73224809 ggctgagggccacgggaggggcaactctggaaataaagtggaaggagggctgggctgagc 73224750
Query: 121 cgggaagtgttgaaaatctgggaggctgagagtggagg 158
||||||||||||||||||||||||||||||||||||||
Sbjct: 73224749 cgggaagtgttgaaaatctgggaggctgagagtggagg 73224712
Score = 163 bits (82), Expect = 2e-37
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 156 aggcccaacgctgtccagctgacgaggatggaatacgccatgaagtctctcagccttctc 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73223263 aggcccaacgctgtccagctgacgaggatggaatacgccatgaagtctctcagccttctc 73223204
Query: 216 taccccaggtccctctccaggt 237
||||||||||||||||||||||
Sbjct: 73223203 taccccaggtccctctccaggt 73223182
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,518,288
Number of extensions: 243
Number of successful extensions: 243
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 243
Number of HSP's successfully gapped: 6
Length of query: 1071
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1050
Effective length of database: 2,808,413,156
Effective search space: 2948833813800
Effective search space used: 2948833813800
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)