Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014182
(1030 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_864887.1| PREDICTED: similar to actin-binding LIM protein... 142 4e-34
Alignment gi|XP_535022.2| PREDICTED: similar to actin-binding LIM protein... 127 1e-29
Alignment gi|XP_864927.1| PREDICTED: similar to actin-binding LIM protein... 121 9e-28
Alignment gi|XP_864906.1| PREDICTED: similar to actin-binding LIM protein... 100 4e-21
Alignment gi|XP_852975.1| PREDICTED: similar to Actin-binding LIM protein... 97 3e-20
Alignment gi|XP_855146.1| PREDICTED: similar to Actin-binding LIM protein... 96 7e-20
>ref|XP_864887.1| PREDICTED: similar to actin-binding LIM protein 1 isoform a isoform
3 [Canis familiaris].
Length = 778
Score = 142 bits (359), Expect = 4e-34
Identities = 65/79 (82%), Positives = 67/79 (84%)
Frame = +2
Query: 218 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 397
+AGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY
Sbjct: 298 EAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 357
Query: 398 SRXXXXXXXXXXHTIYVSI 454
SR HTIY +
Sbjct: 358 SRPGSSIPGSPGHTIYAKV 376
>ref|XP_535022.2| PREDICTED: similar to actin-binding LIM protein 1 isoform 2 [Canis
familiaris].
Length = 846
Score = 127 bits (320), Expect = 1e-29
Identities = 65/107 (60%), Positives = 67/107 (62%), Gaps = 28/107 (26%)
Frame = +2
Query: 218 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLR---------- 367
+AGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLR
Sbjct: 298 EAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRLPNSHRSSSD 357
Query: 368 ------------------PTRTSSESIYSRXXXXXXXXXXHTIYVSI 454
PTRTSSESIYSR HTIY +
Sbjct: 358 FFYPKSLVRRTGRSPSLQPTRTSSESIYSRPGSSIPGSPGHTIYAKV 404
>ref|XP_864927.1| PREDICTED: similar to actin-binding LIM protein 1 isoform 5 [Canis
familiaris].
Length = 862
Score = 121 bits (304), Expect = 9e-28
Identities = 65/123 (52%), Positives = 67/123 (54%), Gaps = 44/123 (35%)
Frame = +2
Query: 218 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLR---------- 367
+AGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLR
Sbjct: 298 EAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRLPNSHRSSSD 357
Query: 368 ----------------------------------PTRTSSESIYSRXXXXXXXXXXHTIY 445
PTRTSSESIYSR HTIY
Sbjct: 358 FFYPKSLVRRTGRSPSLQLLSPPCLVNFNKNPRQPTRTSSESIYSRPGSSIPGSPGHTIY 417
Query: 446 VSI 454
+
Sbjct: 418 AKV 420
>ref|XP_864906.1| PREDICTED: similar to actin-binding LIM protein 1 isoform s isoform
4 [Canis familiaris].
Length = 427
Score = 99.8 bits (247), Expect = 4e-21
Identities = 47/60 (78%), Positives = 48/60 (80%)
Frame = +2
Query: 275 MFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIYSRXXXXXXXXXXHTIYVSI 454
MFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIYSR HTIY +
Sbjct: 1 MFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIYSRPGSSIPGSPGHTIYAKV 60
>ref|XP_852975.1| PREDICTED: similar to Actin-binding LIM protein 2 (Actin-binding
LIM protein family member 2) (abLIM2) [Canis
familiaris].
Length = 858
Score = 96.7 bits (239), Expect = 3e-20
Identities = 40/61 (65%), Positives = 51/61 (83%)
Frame = +2
Query: 218 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 397
+AG+KHYHP CA C RC +MF EGEEMYLQGS++WHP C+Q+ +TE+K + TR+SSESI
Sbjct: 438 EAGEKHYHPLCALCVRCGRMFAEGEEMYLQGSSIWHPACRQAARTEDKNKETRSSSESII 497
Query: 398 S 400
S
Sbjct: 498 S 498
>ref|XP_855146.1| PREDICTED: similar to Actin-binding LIM protein 3 (Actin-binding
LIM protein family member 3) (abLIM3) [Canis
familiaris].
Length = 688
Score = 95.5 bits (236), Expect = 7e-20
Identities = 41/59 (69%), Positives = 48/59 (81%)
Frame = +2
Query: 218 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESI 394
+AG KHYHP+CARC RC+QMFTEGEEMYL GS VWHP CKQ+ + E+KL+ RTS SI
Sbjct: 228 EAGGKHYHPTCARCVRCHQMFTEGEEMYLTGSEVWHPICKQAARAEKKLKHRRTSETSI 286
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,885,154
Number of extensions: 1166274
Number of successful extensions: 4650
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4632
Number of HSP's successfully gapped: 6
Length of query: 343
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 239
Effective length of database: 15,407,560
Effective search space: 3682406840
Effective search space used: 3682406840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-014182
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014182
(1030 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002698576.1| PREDICTED: actin binding LIM protein 1 [Bos ... 127 1e-29
Alignment gi|XP_871451.3| PREDICTED: actin-binding LIM protein 1 isoform ... 127 1e-29
Alignment gi|XP_002688526.1| PREDICTED: actin binding LIM protein family,... 98 1e-20
Alignment gi|XP_875649.4| PREDICTED: actin binding LIM protein family, me... 98 1e-20
Alignment gi|NP_001092597.1| actin-binding LIM protein 3 [Bos taurus]. 96 7e-20
>ref|XP_002698576.1| PREDICTED: actin binding LIM protein 1 [Bos taurus].
Length = 709
Score = 127 bits (320), Expect = 1e-29
Identities = 65/107 (60%), Positives = 67/107 (62%), Gaps = 28/107 (26%)
Frame = +2
Query: 218 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLR---------- 367
+AGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLR
Sbjct: 222 EAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPPNIRRSPSD 281
Query: 368 ------------------PTRTSSESIYSRXXXXXXXXXXHTIYVSI 454
PTRTSSESIYSR HTIY +
Sbjct: 282 FFYPKSLIRRTGRSPCLQPTRTSSESIYSRPGSSIPGSPGHTIYAKV 328
>ref|XP_871451.3| PREDICTED: actin-binding LIM protein 1 isoform 2 [Bos taurus].
Length = 709
Score = 127 bits (320), Expect = 1e-29
Identities = 65/107 (60%), Positives = 67/107 (62%), Gaps = 28/107 (26%)
Frame = +2
Query: 218 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLR---------- 367
+AGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLR
Sbjct: 222 EAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPPNIRRSPSD 281
Query: 368 ------------------PTRTSSESIYSRXXXXXXXXXXHTIYVSI 454
PTRTSSESIYSR HTIY +
Sbjct: 282 FFYPKSLIRRTGRSPCLQPTRTSSESIYSRPGSSIPGSPGHTIYAKV 328
>ref|XP_002688526.1| PREDICTED: actin binding LIM protein family, member 3-like [Bos
taurus].
Length = 696
Score = 98.2 bits (243), Expect = 1e-20
Identities = 41/61 (67%), Positives = 51/61 (83%)
Frame = +2
Query: 218 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 397
+AG+KHYHP CA C RC +MF EGEEMYLQGS++WHP C+Q+ +TE+K + TRTSSESI
Sbjct: 276 EAGEKHYHPLCALCVRCGRMFAEGEEMYLQGSSIWHPACRQAARTEDKNKETRTSSESII 335
Query: 398 S 400
S
Sbjct: 336 S 336
>ref|XP_875649.4| PREDICTED: actin binding LIM protein family, member 3-like [Bos
taurus].
Length = 632
Score = 98.2 bits (243), Expect = 1e-20
Identities = 41/61 (67%), Positives = 51/61 (83%)
Frame = +2
Query: 218 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 397
+AG+KHYHP CA C RC +MF EGEEMYLQGS++WHP C+Q+ +TE+K + TRTSSESI
Sbjct: 212 EAGEKHYHPLCALCVRCGRMFAEGEEMYLQGSSIWHPACRQAARTEDKNKETRTSSESII 271
Query: 398 S 400
S
Sbjct: 272 S 272
>ref|NP_001092597.1| actin-binding LIM protein 3 [Bos taurus].
Length = 683
Score = 95.5 bits (236), Expect = 7e-20
Identities = 41/59 (69%), Positives = 48/59 (81%)
Frame = +2
Query: 218 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESI 394
+AG KHYHP+CARC RC+QMFTEGEEMYL GS VWHP CKQ+ + E+KL+ RTS SI
Sbjct: 223 EAGGKHYHPTCARCVRCHQMFTEGEEMYLTGSEVWHPICKQAARAEKKLKHRRTSETSI 281
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,482,227
Number of extensions: 1183618
Number of successful extensions: 4813
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4790
Number of HSP's successfully gapped: 5
Length of query: 343
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 240
Effective length of database: 14,273,310
Effective search space: 3425594400
Effective search space used: 3425594400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014182
(1030 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003133238.1| PREDICTED: actin-binding LIM protein 1 isofo... 142 2e-34
Alignment gi|XP_001929334.1| PREDICTED: actin-binding LIM protein 1 isofo... 142 2e-34
Alignment gi|XP_003133239.1| PREDICTED: actin-binding LIM protein 1 isofo... 127 8e-30
Alignment gi|XP_003128891.2| PREDICTED: actin-binding LIM protein 2-like ... 99 5e-21
>ref|XP_003133238.1| PREDICTED: actin-binding LIM protein 1 isoform 2 [Sus scrofa].
Length = 577
Score = 142 bits (359), Expect = 2e-34
Identities = 65/79 (82%), Positives = 67/79 (84%)
Frame = +2
Query: 218 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 397
+AGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY
Sbjct: 130 EAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 189
Query: 398 SRXXXXXXXXXXHTIYVSI 454
SR HTIY +
Sbjct: 190 SRPGSSIPGSPGHTIYAKV 208
>ref|XP_001929334.1| PREDICTED: actin-binding LIM protein 1 isoform 1 [Sus scrofa].
Length = 780
Score = 142 bits (359), Expect = 2e-34
Identities = 65/79 (82%), Positives = 67/79 (84%)
Frame = +2
Query: 218 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 397
+AGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY
Sbjct: 298 EAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 357
Query: 398 SRXXXXXXXXXXHTIYVSI 454
SR HTIY +
Sbjct: 358 SRPGSSIPGSPGHTIYAKV 376
>ref|XP_003133239.1| PREDICTED: actin-binding LIM protein 1 isoform 3 [Sus scrofa].
Length = 731
Score = 127 bits (320), Expect = 8e-30
Identities = 65/107 (60%), Positives = 67/107 (62%), Gaps = 28/107 (26%)
Frame = +2
Query: 218 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLR---------- 367
+AGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLR
Sbjct: 221 EAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPPNIHRSPSD 280
Query: 368 ------------------PTRTSSESIYSRXXXXXXXXXXHTIYVSI 454
PTRTSSESIYSR HTIY +
Sbjct: 281 FFYPKSLIRRTGRSPSLQPTRTSSESIYSRPGSSIPGSPGHTIYAKV 327
>ref|XP_003128891.2| PREDICTED: actin-binding LIM protein 2-like [Sus scrofa].
Length = 669
Score = 98.6 bits (244), Expect = 5e-21
Identities = 41/61 (67%), Positives = 52/61 (85%)
Frame = +2
Query: 218 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 397
+AG+KHYHP CA C RC +MF+EGEEMYLQGS++WHP C+Q+ +TE+K + TRTSSESI
Sbjct: 249 EAGEKHYHPLCALCVRCGRMFSEGEEMYLQGSSIWHPACRQAARTEDKNKETRTSSESII 308
Query: 398 S 400
S
Sbjct: 309 S 309
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,410,784
Number of extensions: 816424
Number of successful extensions: 2959
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2936
Number of HSP's successfully gapped: 4
Length of query: 343
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 243
Effective length of database: 8,854,232
Effective search space: 2151578376
Effective search space used: 2151578376
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014182
(1030 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001096647.1| actin-binding LIM protein 1 isoform 2 [Mus m... 142 3e-34
Alignment gi|NP_848803.3| actin-binding LIM protein 1 isoform 1 [Mus musc... 121 8e-28
Alignment gi|NP_001171171.1| actin-binding LIM protein 2 isoform 6 [Mus m... 102 4e-22
Alignment gi|NP_001171170.1| actin-binding LIM protein 2 isoform 5 [Mus m... 102 4e-22
Alignment gi|NP_001171168.1| actin-binding LIM protein 2 isoform 2 [Mus m... 102 4e-22
Alignment gi|NP_808346.3| actin-binding LIM protein 2 isoform 3 [Mus musc... 102 4e-22
Alignment gi|NP_001157963.1| actin-binding LIM protein 3 [Mus musculus]. 96 6e-20
Alignment gi|NP_941051.2| actin-binding LIM protein 3 [Mus musculus]. 96 6e-20
Alignment gi|NP_001171169.1| actin-binding LIM protein 2 isoform 4 [Mus m... 93 3e-19
Alignment gi|NP_001171167.1| actin-binding LIM protein 2 isoform 1 [Mus m... 93 3e-19
>ref|NP_001096647.1| actin-binding LIM protein 1 isoform 2 [Mus musculus].
Length = 701
Score = 142 bits (359), Expect = 3e-34
Identities = 65/79 (82%), Positives = 67/79 (84%)
Frame = +2
Query: 218 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 397
+AGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY
Sbjct: 222 EAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 281
Query: 398 SRXXXXXXXXXXHTIYVSI 454
SR HTIY +
Sbjct: 282 SRPGSSIPGSPGHTIYAKV 300
>ref|NP_848803.3| actin-binding LIM protein 1 isoform 1 [Mus musculus].
Length = 861
Score = 121 bits (304), Expect = 8e-28
Identities = 65/123 (52%), Positives = 67/123 (54%), Gaps = 44/123 (35%)
Frame = +2
Query: 218 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLR---------- 367
+AGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLR
Sbjct: 298 EAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPPNIPRSSSD 357
Query: 368 ----------------------------------PTRTSSESIYSRXXXXXXXXXXHTIY 445
PTRTSSESIYSR HTIY
Sbjct: 358 FFYPKSLIRRTGRSPALQLLSPPCLMNSNKNPRQPTRTSSESIYSRPGSSIPGSPGHTIY 417
Query: 446 VSI 454
+
Sbjct: 418 AKV 420
>ref|NP_001171171.1| actin-binding LIM protein 2 isoform 6 [Mus musculus].
Length = 573
Score = 102 bits (255), Expect = 4e-22
Identities = 43/61 (70%), Positives = 53/61 (86%)
Frame = +2
Query: 218 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 397
+AG+KHYHPSCA C RC QMF+EGEEMYLQGS++WHP C+Q+ +TE+K + TRTSSESI
Sbjct: 225 EAGEKHYHPSCALCVRCGQMFSEGEEMYLQGSSIWHPACRQAARTEDKSKETRTSSESIV 284
Query: 398 S 400
S
Sbjct: 285 S 285
>ref|NP_001171170.1| actin-binding LIM protein 2 isoform 5 [Mus musculus].
Length = 606
Score = 102 bits (255), Expect = 4e-22
Identities = 43/61 (70%), Positives = 53/61 (86%)
Frame = +2
Query: 218 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 397
+AG+KHYHPSCA C RC QMF+EGEEMYLQGS++WHP C+Q+ +TE+K + TRTSSESI
Sbjct: 225 EAGEKHYHPSCALCVRCGQMFSEGEEMYLQGSSIWHPACRQAARTEDKSKETRTSSESIV 284
Query: 398 S 400
S
Sbjct: 285 S 285
>ref|NP_001171168.1| actin-binding LIM protein 2 isoform 2 [Mus musculus].
Length = 617
Score = 102 bits (255), Expect = 4e-22
Identities = 43/61 (70%), Positives = 53/61 (86%)
Frame = +2
Query: 218 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 397
+AG+KHYHPSCA C RC QMF+EGEEMYLQGS++WHP C+Q+ +TE+K + TRTSSESI
Sbjct: 225 EAGEKHYHPSCALCVRCGQMFSEGEEMYLQGSSIWHPACRQAARTEDKSKETRTSSESIV 284
Query: 398 S 400
S
Sbjct: 285 S 285
>ref|NP_808346.3| actin-binding LIM protein 2 isoform 3 [Mus musculus].
Length = 612
Score = 102 bits (255), Expect = 4e-22
Identities = 43/61 (70%), Positives = 53/61 (86%)
Frame = +2
Query: 218 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 397
+AG+KHYHPSCA C RC QMF+EGEEMYLQGS++WHP C+Q+ +TE+K + TRTSSESI
Sbjct: 225 EAGEKHYHPSCALCVRCGQMFSEGEEMYLQGSSIWHPACRQAARTEDKSKETRTSSESIV 284
Query: 398 S 400
S
Sbjct: 285 S 285
>ref|NP_001157963.1| actin-binding LIM protein 3 [Mus musculus].
Length = 682
Score = 95.5 bits (236), Expect = 6e-20
Identities = 41/59 (69%), Positives = 48/59 (81%)
Frame = +2
Query: 218 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESI 394
+AG KHYHP+CARC RC+QMFTEGEEMYL GS VWHP CKQ+ + E+KL+ RTS SI
Sbjct: 223 EAGGKHYHPTCARCVRCHQMFTEGEEMYLTGSEVWHPICKQAARAEKKLKHRRTSETSI 281
>ref|NP_941051.2| actin-binding LIM protein 3 [Mus musculus].
Length = 682
Score = 95.5 bits (236), Expect = 6e-20
Identities = 41/59 (69%), Positives = 48/59 (81%)
Frame = +2
Query: 218 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESI 394
+AG KHYHP+CARC RC+QMFTEGEEMYL GS VWHP CKQ+ + E+KL+ RTS SI
Sbjct: 223 EAGGKHYHPTCARCVRCHQMFTEGEEMYLTGSEVWHPICKQAARAEKKLKHRRTSETSI 281
>ref|NP_001171169.1| actin-binding LIM protein 2 isoform 4 [Mus musculus].
Length = 607
Score = 93.2 bits (230), Expect = 3e-19
Identities = 44/80 (55%), Positives = 54/80 (67%), Gaps = 19/80 (23%)
Frame = +2
Query: 218 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEK------------ 361
+AG+KHYHPSCA C RC QMF+EGEEMYLQGS++WHP C+Q+ +TE+K
Sbjct: 225 EAGEKHYHPSCALCVRCGQMFSEGEEMYLQGSSIWHPACRQAARTEDKSKMHSSVCSQPC 284
Query: 362 -------LRPTRTSSESIYS 400
L+ TRTSSESI S
Sbjct: 285 PGTLPCALQETRTSSESIVS 304
>ref|NP_001171167.1| actin-binding LIM protein 2 isoform 1 [Mus musculus].
Length = 664
Score = 93.2 bits (230), Expect = 3e-19
Identities = 44/80 (55%), Positives = 54/80 (67%), Gaps = 19/80 (23%)
Frame = +2
Query: 218 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEK------------ 361
+AG+KHYHPSCA C RC QMF+EGEEMYLQGS++WHP C+Q+ +TE+K
Sbjct: 225 EAGEKHYHPSCALCVRCGQMFSEGEEMYLQGSSIWHPACRQAARTEDKSKMHSSVCSQPC 284
Query: 362 -------LRPTRTSSESIYS 400
L+ TRTSSESI S
Sbjct: 285 PGTLPCALQETRTSSESIVS 304
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,061,035
Number of extensions: 974626
Number of successful extensions: 4013
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 3980
Number of HSP's successfully gapped: 11
Length of query: 343
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 241
Effective length of database: 12,553,887
Effective search space: 3025486767
Effective search space used: 3025486767
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014182
(1030 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003407.1| actin-binding LIM protein 1 isoform b [Homo ... 142 4e-34
Alignment gi|NP_002304.3| actin-binding LIM protein 1 isoform a [Homo sap... 142 4e-34
Alignment gi|NP_001003408.1| actin-binding LIM protein 1 isoform c [Homo ... 127 1e-29
Alignment gi|NP_001123560.1| actin-binding LIM protein 2 isoform 7 [Homo ... 100 2e-21
Alignment gi|NP_115808.3| actin-binding LIM protein 2 isoform 6 [Homo sap... 100 2e-21
Alignment gi|NP_001123559.1| actin-binding LIM protein 2 isoform 5 [Homo ... 100 2e-21
Alignment gi|NP_001123558.1| actin-binding LIM protein 2 isoform 4 [Homo ... 100 2e-21
Alignment gi|NP_001123557.1| actin-binding LIM protein 2 isoform 3 [Homo ... 100 2e-21
Alignment gi|NP_001123556.1| actin-binding LIM protein 2 isoform 2 [Homo ... 100 2e-21
Alignment gi|NP_001123555.1| actin-binding LIM protein 2 isoform 1 [Homo ... 100 2e-21
>ref|NP_001003407.1| actin-binding LIM protein 1 isoform b [Homo sapiens].
Length = 718
Score = 142 bits (359), Expect = 4e-34
Identities = 65/79 (82%), Positives = 67/79 (84%)
Frame = +2
Query: 218 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 397
+AGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY
Sbjct: 238 EAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 297
Query: 398 SRXXXXXXXXXXHTIYVSI 454
SR HTIY +
Sbjct: 298 SRPGSSIPGSPGHTIYAKV 316
>ref|NP_002304.3| actin-binding LIM protein 1 isoform a [Homo sapiens].
Length = 778
Score = 142 bits (359), Expect = 4e-34
Identities = 65/79 (82%), Positives = 67/79 (84%)
Frame = +2
Query: 218 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 397
+AGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY
Sbjct: 298 EAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 357
Query: 398 SRXXXXXXXXXXHTIYVSI 454
SR HTIY +
Sbjct: 358 SRPGSSIPGSPGHTIYAKV 376
>ref|NP_001003408.1| actin-binding LIM protein 1 isoform c [Homo sapiens].
Length = 746
Score = 127 bits (320), Expect = 1e-29
Identities = 65/107 (60%), Positives = 67/107 (62%), Gaps = 28/107 (26%)
Frame = +2
Query: 218 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLR---------- 367
+AGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLR
Sbjct: 238 EAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRLPNIRRSSSD 297
Query: 368 ------------------PTRTSSESIYSRXXXXXXXXXXHTIYVSI 454
PTRTSSESIYSR HTIY +
Sbjct: 298 FFYSKSLIRRTGRSPSLQPTRTSSESIYSRPGSSIPGSPGHTIYAKV 344
>ref|NP_001123560.1| actin-binding LIM protein 2 isoform 7 [Homo sapiens].
Length = 470
Score = 100 bits (250), Expect = 2e-21
Identities = 42/61 (68%), Positives = 52/61 (85%)
Frame = +2
Query: 218 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 397
+AG+KHYHPSCA C RC QMF EGEEMYLQGS++WHP C+Q+ +TE++ + TRTSSESI
Sbjct: 225 EAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTEDRNKETRTSSESII 284
Query: 398 S 400
S
Sbjct: 285 S 285
>ref|NP_115808.3| actin-binding LIM protein 2 isoform 6 [Homo sapiens].
Length = 521
Score = 100 bits (250), Expect = 2e-21
Identities = 42/61 (68%), Positives = 52/61 (85%)
Frame = +2
Query: 218 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 397
+AG+KHYHPSCA C RC QMF EGEEMYLQGS++WHP C+Q+ +TE++ + TRTSSESI
Sbjct: 225 EAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTEDRNKETRTSSESII 284
Query: 398 S 400
S
Sbjct: 285 S 285
>ref|NP_001123559.1| actin-binding LIM protein 2 isoform 5 [Homo sapiens].
Length = 531
Score = 100 bits (250), Expect = 2e-21
Identities = 42/61 (68%), Positives = 52/61 (85%)
Frame = +2
Query: 218 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 397
+AG+KHYHPSCA C RC QMF EGEEMYLQGS++WHP C+Q+ +TE++ + TRTSSESI
Sbjct: 225 EAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTEDRNKETRTSSESII 284
Query: 398 S 400
S
Sbjct: 285 S 285
>ref|NP_001123558.1| actin-binding LIM protein 2 isoform 4 [Homo sapiens].
Length = 559
Score = 100 bits (250), Expect = 2e-21
Identities = 42/61 (68%), Positives = 52/61 (85%)
Frame = +2
Query: 218 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 397
+AG+KHYHPSCA C RC QMF EGEEMYLQGS++WHP C+Q+ +TE++ + TRTSSESI
Sbjct: 225 EAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTEDRNKETRTSSESII 284
Query: 398 S 400
S
Sbjct: 285 S 285
>ref|NP_001123557.1| actin-binding LIM protein 2 isoform 3 [Homo sapiens].
Length = 572
Score = 100 bits (250), Expect = 2e-21
Identities = 42/61 (68%), Positives = 52/61 (85%)
Frame = +2
Query: 218 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 397
+AG+KHYHPSCA C RC QMF EGEEMYLQGS++WHP C+Q+ +TE++ + TRTSSESI
Sbjct: 225 EAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTEDRNKETRTSSESII 284
Query: 398 S 400
S
Sbjct: 285 S 285
>ref|NP_001123556.1| actin-binding LIM protein 2 isoform 2 [Homo sapiens].
Length = 611
Score = 100 bits (250), Expect = 2e-21
Identities = 42/61 (68%), Positives = 52/61 (85%)
Frame = +2
Query: 218 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 397
+AG+KHYHPSCA C RC QMF EGEEMYLQGS++WHP C+Q+ +TE++ + TRTSSESI
Sbjct: 225 EAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTEDRNKETRTSSESII 284
Query: 398 S 400
S
Sbjct: 285 S 285
>ref|NP_001123555.1| actin-binding LIM protein 2 isoform 1 [Homo sapiens].
Length = 645
Score = 100 bits (250), Expect = 2e-21
Identities = 42/61 (68%), Positives = 52/61 (85%)
Frame = +2
Query: 218 KAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIY 397
+AG+KHYHPSCA C RC QMF EGEEMYLQGS++WHP C+Q+ +TE++ + TRTSSESI
Sbjct: 225 EAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTEDRNKETRTSSESII 284
Query: 398 S 400
S
Sbjct: 285 S 285
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,155,120
Number of extensions: 1152720
Number of successful extensions: 4633
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 4611
Number of HSP's successfully gapped: 12
Length of query: 343
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 240
Effective length of database: 14,901,872
Effective search space: 3576449280
Effective search space used: 3576449280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014182
(1030 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 1086 0.0
>Sscrofa_Chr14
|| Length = 153851969
Score = 1086 bits (548), Expect = 0.0
Identities = 562/569 (98%)
Strand = Plus / Minus
Query: 367 gcccaccaggacctcctctgaaagcatttattctagaccaggctccagtatccctggctc 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135918907 gcccaccaggacctcctctgaaagcatttattctagaccaggctccagtatccctggctc 135918848
Query: 427 cccaggtcataccatctatgtaagtatctccttctggaagactcttccgggccaggtaag 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135918847 cccaggtcataccatctatgtaagtatctccttctggaagactcttccgggccaggtaag 135918788
Query: 487 gtagcagagggtaagcgtggcctgaataaccccaaagccaataattcacaacgatttctc 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135918787 gtagcagagggtaagcgtggcctgaataaccccaaagccaataattcacaacgatttctc 135918728
Query: 547 tttctgtggagagacccacggttccgtcttgtagatcagccatctcaatcccgttttcct 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135918727 tttctgtggagagacccacggttccgtcttgtagatcagccatctcaatcccgttttcct 135918668
Query: 607 ccaggcgatcaactgtgtccattgatcgagtgatgaagtaggtggcgtataaaatgccct 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135918667 ccaggcgatcaactgtgtccattgatcgagtgatgaagtaggtggcgtataaaatgccct 135918608
Query: 667 gagaggatgcaggactcaaacaaatgttcctcaattgcatatagctgtttggggattcat 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135918607 gagaggatgcaggactcaaacaaatgttcctcaattgcatatagctgtttggggattcat 135918548
Query: 727 tatacattttacataaaaaacattgatatgaatattcttaaattctgccacagaggtctt 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135918547 tatacattttacataaaaaacattgatatgaatattcttaaattctgccacagaggtctt 135918488
Query: 787 taaatatttagtcgttcagtatgcccttcttgtttttaactatctgggaggannnnnnng 846
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 135918487 taaatatttagtcgttcagtatgcccttcttgtttttaactatctgggaggatttttttg 135918428
Query: 847 accccctgagcttttccttctctgtaataaatttagaaaaactatcctgaaggtttgcag 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135918427 accccctgagcttttccttctctgtaataaatttagaaaaactatcctgaaggtttgcag 135918368
Query: 907 gcttctctatttgacaaattctacgtaga 935
|||||||||||||||||||||||||||||
Sbjct: 135918367 gcttctctatttgacaaattctacgtaga 135918339
Score = 436 bits (220), Expect = e-119
Identities = 220/220 (100%)
Strand = Plus / Minus
Query: 2 cttgtttccggtgtgtgtgtctctggagacacgcacgtttgcatgtttccttaactgcgc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135972473 cttgtttccggtgtgtgtgtctctggagacacgcacgtttgcatgtttccttaactgcgc 135972414
Query: 62 atcggagaggggccagtgtcctcggggagggcagagagccccgggctgaggtccggtgtc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135972413 atcggagaggggccagtgtcctcggggagggcagagagccccgggctgaggtccggtgtc 135972354
Query: 122 cacaagcctctgcacagtgttctgagtttgaagcccagaggagttccctgctcagcacag 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135972353 cacaagcctctgcacagtgttctgagtttgaagcccagaggagttccctgctcagcacag 135972294
Query: 182 ccagggacagaggtagaagaaaagaagccctggcgtaagg 221
||||||||||||||||||||||||||||||||||||||||
Sbjct: 135972293 ccagggacagaggtagaagaaaagaagccctggcgtaagg 135972254
Score = 182 bits (92), Expect = 3e-43
Identities = 92/92 (100%)
Strand = Plus / Minus
Query: 219 aggcaggtgacaaacattaccatcctagctgtgcacgatgcagcaggtgcaaccagatgt 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135937398 aggcaggtgacaaacattaccatcctagctgtgcacgatgcagcaggtgcaaccagatgt 135937339
Query: 279 tcacagaaggagaggaaatgtatcttcaaggt 310
||||||||||||||||||||||||||||||||
Sbjct: 135937338 tcacagaaggagaggaaatgtatcttcaaggt 135937307
Score = 121 bits (61), Expect = 8e-25
Identities = 61/61 (100%)
Strand = Plus / Minus
Query: 307 aggttctaccgtttggcatcccgactgtaagcagtccaccaaaacggaggaaaagctgcg 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135932670 aggttctaccgtttggcatcccgactgtaagcagtccaccaaaacggaggaaaagctgcg 135932611
Query: 367 g 367
|
Sbjct: 135932610 g 135932610
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,575,115
Number of extensions: 230
Number of successful extensions: 230
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 4
Length of query: 1030
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1009
Effective length of database: 2,808,413,156
Effective search space: 2833688874404
Effective search space used: 2833688874404
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)