Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014193
(1257 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,430,380
Number of extensions: 1408627
Number of successful extensions: 7702
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 7591
Number of HSP's successfully gapped: 0
Length of query: 419
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 314
Effective length of database: 15,374,224
Effective search space: 4827506336
Effective search space used: 4827506336
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-014193
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014193
(1257 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001077262.1| small cell adhesion glycoprotein [Bos taurus]. 78 2e-14
>ref|NP_001077262.1| small cell adhesion glycoprotein [Bos taurus].
Length = 97
Score = 77.8 bits (190), Expect = 2e-14
Identities = 44/97 (45%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Frame = +2
Query: 455 MTNLTTVPSPGE-LMSSPILRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYLY 631
MT+ T P P E LM++ IL+ YLY
Sbjct: 1 MTSFPTTPPPAEELMATTILQATEALSPEAEASTALIAVVITVVFLTLLSVVILIFFYLY 60
Query: 632 KNKGSYVTYEPAEGEPGAVLQMESNSAKGKEKEEYFI 742
KNKGSYVTYEPA+GEPGAV+ ME++SAKG+EKEEYFI
Sbjct: 61 KNKGSYVTYEPADGEPGAVVLMENDSAKGREKEEYFI 97
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,314,456
Number of extensions: 1361403
Number of successful extensions: 7395
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7323
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 314
Effective length of database: 14,207,134
Effective search space: 4461040076
Effective search space used: 4461040076
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014193
(1257 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126188.1| PREDICTED: small cell adhesion glycoprotein-... 110 2e-24
>ref|XP_003126188.1| PREDICTED: small cell adhesion glycoprotein-like [Sus scrofa].
Length = 96
Score = 110 bits (274), Expect = 2e-24
Identities = 60/96 (62%), Positives = 60/96 (62%)
Frame = +2
Query: 455 MTNLTTVPSPGELMSSPILRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYLYK 634
MTNLTTVPSPGELMSSPILR YLYK
Sbjct: 1 MTNLTTVPSPGELMSSPILRPTEAPSPEAEASTALIAVVITVVFLTLLSVVVLIFFYLYK 60
Query: 635 NKGSYVTYEPAEGEPGAVLQMESNSAKGKEKEEYFI 742
NKGSYVTYEPAEGEPGAVLQMESNSAKGKEKEEYFI
Sbjct: 61 NKGSYVTYEPAEGEPGAVLQMESNSAKGKEKEEYFI 96
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,990,995
Number of extensions: 883742
Number of successful extensions: 4661
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4603
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 317
Effective length of database: 8,804,438
Effective search space: 2791006846
Effective search space used: 2791006846
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014193
(1257 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029044.1| small cell adhesion glycoprotein [Mus muscul... 80 3e-15
Alignment gi|NP_778157.2| small cell adhesion glycoprotein [Mus musculus]. 80 3e-15
>ref|NP_001029044.1| small cell adhesion glycoprotein [Mus musculus].
Length = 97
Score = 80.5 bits (197), Expect = 3e-15
Identities = 44/97 (45%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Frame = +2
Query: 455 MTNLTTVPSPGELMSSPILRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXY-LY 631
M NL PSP ELM++P+ + + LY
Sbjct: 1 MNNLPATPSPEELMTTPVFQAPETLSPQAEEASTALIAVVITVVFLTLLSVVTLIFFHLY 60
Query: 632 KNKGSYVTYEPAEGEPGAVLQMESNSAKGKEKEEYFI 742
KNKGSYVTYEPAEGEP A+LQME++SAKG+EKEEYFI
Sbjct: 61 KNKGSYVTYEPAEGEPSAILQMETDSAKGREKEEYFI 97
>ref|NP_778157.2| small cell adhesion glycoprotein [Mus musculus].
Length = 97
Score = 80.5 bits (197), Expect = 3e-15
Identities = 44/97 (45%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Frame = +2
Query: 455 MTNLTTVPSPGELMSSPILRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXY-LY 631
M NL PSP ELM++P+ + + LY
Sbjct: 1 MNNLPATPSPEELMTTPVFQAPETLSPQAEEASTALIAVVITVVFLTLLSVVTLIFFHLY 60
Query: 632 KNKGSYVTYEPAEGEPGAVLQMESNSAKGKEKEEYFI 742
KNKGSYVTYEPAEGEP A+LQME++SAKG+EKEEYFI
Sbjct: 61 KNKGSYVTYEPAEGEPSAILQMETDSAKGREKEEYFI 97
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,395,680
Number of extensions: 1108424
Number of successful extensions: 5859
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5786
Number of HSP's successfully gapped: 4
Length of query: 419
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 315
Effective length of database: 12,493,815
Effective search space: 3935551725
Effective search space used: 3935551725
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014193
(1257 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001026798.1| small cell adhesion glycoprotein [Homo sapie... 81 2e-15
Alignment gi|NP_001029045.1| small cell adhesion glycoprotein [Homo sapie... 81 2e-15
>ref|NP_001026798.1| small cell adhesion glycoprotein [Homo sapiens].
Length = 97
Score = 81.3 bits (199), Expect = 2e-15
Identities = 46/97 (47%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Frame = +2
Query: 455 MTNLTTVPSPGE-LMSSPILRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYLY 631
MT+L T PSP E LM++PIL+ YLY
Sbjct: 1 MTSLLTTPSPREELMTTPILQPTEALSPEDGASTALIAVVITVVFLTLLSVVILIFFYLY 60
Query: 632 KNKGSYVTYEPAEGEPGAVLQMESNSAKGKEKEEYFI 742
KNKGSYVTYEP EGEP A++QMES+ AKG EKEEYFI
Sbjct: 61 KNKGSYVTYEPTEGEPSAIVQMESDLAKGSEKEEYFI 97
>ref|NP_001029045.1| small cell adhesion glycoprotein [Homo sapiens].
Length = 97
Score = 81.3 bits (199), Expect = 2e-15
Identities = 46/97 (47%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Frame = +2
Query: 455 MTNLTTVPSPGE-LMSSPILRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYLY 631
MT+L T PSP E LM++PIL+ YLY
Sbjct: 1 MTSLLTTPSPREELMTTPILQPTEALSPEDGASTALIAVVITVVFLTLLSVVILIFFYLY 60
Query: 632 KNKGSYVTYEPAEGEPGAVLQMESNSAKGKEKEEYFI 742
KNKGSYVTYEP EGEP A++QMES+ AKG EKEEYFI
Sbjct: 61 KNKGSYVTYEPTEGEPSAIVQMESDLAKGSEKEEYFI 97
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,167,506
Number of extensions: 1355153
Number of successful extensions: 7049
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6979
Number of HSP's successfully gapped: 2
Length of query: 419
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 314
Effective length of database: 14,835,944
Effective search space: 4658486416
Effective search space used: 4658486416
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014193
(1257 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 1322 0.0
gb|GL896161.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 230 1e-57
Sscrofa_Chr02 139 4e-30
>Sscrofa_Chr05
|| Length = 111506441
Score = 1322 bits (667), Expect = 0.0
Identities = 688/694 (99%), Gaps = 2/694 (0%)
Strand = Plus / Minus
Query: 564 cagttgtcatcaccgtggtcttcctcaccctgctctctgtcgtggtcctgatcttctttt 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17310271 cagttgtcatcaccgtggtcttcctcaccctgctctctgtcgtggtcctgatcttctttt 17310212
Query: 624 acctgtacaagaacaaaggcagctacgtcacctacgaacctgccgaaggcgagcccggcg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17310211 acctgtacaagaacaaaggcagctacgtcacctacgaacctgccgaaggcgagcccggcg 17310152
Query: 684 ccgtcctccagatggagagtaactccgccaagggcaaggagaaggaggaatacttcatct 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17310151 ccgtcctccagatggagagtaactccgccaagggcaaggagaaggaggaatacttcatct 17310092
Query: 744 aatggttcccgggccccaaggagctcatccaggctccagtgctgacacactatttattag 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17310091 aatggttcccgggccccaaggagctcatccaggctccagtgctgacacactatttattag 17310032
Query: 804 gtgagagttttatctgaaaccgatgagaagcatccatcgctgtgggcagaccggagctcc 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17310031 gtgagagttttatctgaaaccgatgagaagcatccatcgctgtgggcagaccggagctcc 17309972
Query: 864 ttccaggacccaggcccaaatgccagcatcacagacgccagggcccagagacccggagaa 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17309971 ttccaggacccaggcccaaatgccagcatcacagacgccagggcccagagacccggagaa 17309912
Query: 924 agcggctcacgaagtctcgagtcagacctttgtcatacagctggtgtttgtgattgagag 983
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 17309911 agcggctcacgaagtctcgagtcagacctttgtcatacagctggtgtttgtgatt--gag 17309854
Query: 984 cgacgaggtggagccgtaccaggcagcccccgggtactgcctggccatcgtcactttctc 1043
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 17309853 cgacgaggtggagccgtaccaggcagccaccgggtactgcctggccatcgtcactttctc 17309794
Query: 1044 tacagctcagagggaaggagagttgggggtcactggttgctcctgcgttccctacctggt 1103
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17309793 cacagctcagagggaaggagagttgggggtcactggttgctcctgcgttccctacctggt 17309734
Query: 1104 cacctagcgacagcccgagtgcaaatagtgtcccctggaagctcctcccagaggccggag 1163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17309733 cacctagcgacagcccgagtgcaaatagtgtcccctggaagctcctcccagaggccggag 17309674
Query: 1164 cccacagtgaaagggcaggccgggaggggcaggagggccgtgaagacgtcactgctgaag 1223
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17309673 cccacagtgaaaggccaggccgggaggggcaggagggccgtgaagacgtcactgctgaag 17309614
Query: 1224 gggcgggccacctcccttaacttgagcccttcct 1257
||||||||||||||||||||| ||||||||||||
Sbjct: 17309613 gggcgggccacctcccttaacctgagcccttcct 17309580
Score = 712 bits (359), Expect = 0.0
Identities = 412/435 (94%), Gaps = 8/435 (1%)
Strand = Plus / Minus
Query: 1 tttgctgaaaattcaaataaacgtcgatggcggcgaaagcggacggagcccctcagcgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 17357644 tttgctgaaaattcaaataaacgtcgatggcggcgaaagcggacggagcccctcagccct 17357585
Query: 61 gggttcattcagagcccgcgctctcccagcctcgagacaggcgggggaggaagcggctcc 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 17357584 gggttcattcagagcccgcgctctcccagcctcgaggcaggcgggggaggaagcggctcc 17357525
Query: 121 ag--------taaagtgacaatcggagaaggaaaagcagcctttcctcccgggggagcag 172
|| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17357524 agagggagtgtaaagtgacaatcggagaaggaaaagcagcctttcctcccgggggagcag 17357465
Query: 173 aggcggcccggcgggcagagggaacctgcagagggcggtttctctcctcttttcctgtcc 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17357464 aggcggcccggcgggcagagggaacctgcagagggcggtttctctcctcttttcctgtcc 17357405
Query: 233 cacccagtcggccagnnnnnnnnnnnnnactcccgaccggcctcggccgctaactccgcg 292
||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 17357404 cacccagtcggccagcccccccacccccactcccgaccggcctcggccgctaactccgcg 17357345
Query: 293 cgtctctccgccgctccctcacttcggtgtccccggcaggtccctgcgacccctgccgta 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17357344 cgtctctccgccgctccctcacttcggtgtccccggcaggtccctgcgacccctgccgta 17357285
Query: 353 gccgcccccgtcgagttgggaaggacgcgcggagcggcgcccggcccttcggcggcagcc 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17357284 gccgcccccgtcgagttgggaaggacgcgcggagcggcgcccggcccttcggcggcagcc 17357225
Query: 413 cgtccgactggtaag 427
|||||||||||||||
Sbjct: 17357224 cgtccgactggtaag 17357210
Score = 159 bits (80), Expect = 4e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 487 agaactgatgagcagcccaattctacggcccactgaggccccgtccccagaagctgaagc 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17311646 agaactgatgagcagcccaattctacggcccactgaggccccgtccccagaagctgaagc 17311587
Query: 547 cagcacagcactcattgcag 566
||||||||||||||||||||
Sbjct: 17311586 cagcacagcactcattgcag 17311567
Score = 125 bits (63), Expect = 6e-26
Identities = 63/63 (100%)
Strand = Plus / Minus
Query: 426 agatctgcacctcccgtccacctgacgcgatgacgaacctcacaaccgtgccttctccag 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17356338 agatctgcacctcccgtccacctgacgcgatgacgaacctcacaaccgtgccttctccag 17356279
Query: 486 gag 488
|||
Sbjct: 17356278 gag 17356276
>gb|GL896161.1| Sus scrofa unplaced genomic scaffold chrU_scaffold529
Length = 39155
Score = 230 bits (116), Expect = 1e-57
Identities = 116/116 (100%)
Strand = Plus / Minus
Query: 130 acaatcggagaaggaaaagcagcctttcctcccgggggagcagaggcggcccggcgggca 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7121 acaatcggagaaggaaaagcagcctttcctcccgggggagcagaggcggcccggcgggca 7062
Query: 190 gagggaacctgcagagggcggtttctctcctcttttcctgtcccacccagtcggcc 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7061 gagggaacctgcagagggcggtttctctcctcttttcctgtcccacccagtcggcc 7006
Score = 151 bits (76), Expect = 1e-33
Identities = 79/80 (98%)
Strand = Plus / Minus
Query: 1 tttgctgaaaattcaaataaacgtcgatggcggcgaaagcggacggagcccctcagcgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 7301 tttgctgaaaattcaaataaacgtcgatggcggcgaaagcggacggagcccctcagccct 7242
Query: 61 gggttcattcagagcccgcg 80
||||||||||||||||||||
Sbjct: 7241 gggttcattcagagcccgcg 7222
>Sscrofa_Chr02
|| Length = 162569375
Score = 139 bits (70), Expect = 4e-30
Identities = 109/122 (89%)
Strand = Plus / Minus
Query: 1037 ctttctctacagctcagagggaaggagagttgggggtcactggttgctcctgcgttccct 1096
||||||| |||| ||| | |||||||||||||||||||||||||||||||| |||||||
Sbjct: 120065379 ctttctccacaggtcataaggaaggagagttgggggtcactggttgctcctctgttccct 120065320
Query: 1097 acctggtcacctagcgacagcccgagtgcaaatagtgtcccctggaagctcctcccagag 1156
|||||||||||||| |||||| |||||||||||| |||| |||||||||||||||||
Sbjct: 120065319 acctggtcacctagtcacagcctgagtgcaaatagcatcccacggaagctcctcccagag 120065260
Query: 1157 gc 1158
||
Sbjct: 120065259 gc 120065258
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,538,426
Number of extensions: 160
Number of successful extensions: 160
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 9
Length of query: 1257
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1236
Effective length of database: 2,808,413,156
Effective search space: 3471198660816
Effective search space used: 3471198660816
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)