Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-014193
         (1257 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done

 ***** No hits found ******


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,430,380
Number of extensions: 1408627
Number of successful extensions: 7702
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 7591
Number of HSP's successfully gapped: 0
Length of query: 419
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 314
Effective length of database: 15,374,224
Effective search space: 4827506336
Effective search space used: 4827506336
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-014193

Animal-Genome cDNA 20110601C-014193


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-014193
         (1257 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001077262.1| small cell adhesion glycoprotein [Bos taurus].     78   2e-14

>ref|NP_001077262.1| small cell adhesion glycoprotein [Bos taurus].
          Length = 97

 Score = 77.8 bits (190), Expect = 2e-14
 Identities = 44/97 (45%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
 Frame = +2

Query: 455 MTNLTTVPSPGE-LMSSPILRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYLY 631
           MT+  T P P E LM++ IL+                                    YLY
Sbjct: 1   MTSFPTTPPPAEELMATTILQATEALSPEAEASTALIAVVITVVFLTLLSVVILIFFYLY 60

Query: 632 KNKGSYVTYEPAEGEPGAVLQMESNSAKGKEKEEYFI 742
           KNKGSYVTYEPA+GEPGAV+ ME++SAKG+EKEEYFI
Sbjct: 61  KNKGSYVTYEPADGEPGAVVLMENDSAKGREKEEYFI 97


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,314,456
Number of extensions: 1361403
Number of successful extensions: 7395
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7323
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 314
Effective length of database: 14,207,134
Effective search space: 4461040076
Effective search space used: 4461040076
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-014193
         (1257 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003126188.1| PREDICTED: small cell adhesion glycoprotein-...   110   2e-24

>ref|XP_003126188.1| PREDICTED: small cell adhesion glycoprotein-like [Sus scrofa].
          Length = 96

 Score =  110 bits (274), Expect = 2e-24
 Identities = 60/96 (62%), Positives = 60/96 (62%)
 Frame = +2

Query: 455 MTNLTTVPSPGELMSSPILRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYLYK 634
           MTNLTTVPSPGELMSSPILR                                    YLYK
Sbjct: 1   MTNLTTVPSPGELMSSPILRPTEAPSPEAEASTALIAVVITVVFLTLLSVVVLIFFYLYK 60

Query: 635 NKGSYVTYEPAEGEPGAVLQMESNSAKGKEKEEYFI 742
           NKGSYVTYEPAEGEPGAVLQMESNSAKGKEKEEYFI
Sbjct: 61  NKGSYVTYEPAEGEPGAVLQMESNSAKGKEKEEYFI 96


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,990,995
Number of extensions: 883742
Number of successful extensions: 4661
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4603
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 317
Effective length of database: 8,804,438
Effective search space: 2791006846
Effective search space used: 2791006846
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-014193
         (1257 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001029044.1| small cell adhesion glycoprotein [Mus muscul...    80   3e-15
Alignment   gi|NP_778157.2| small cell adhesion glycoprotein [Mus musculus].      80   3e-15

>ref|NP_001029044.1| small cell adhesion glycoprotein [Mus musculus].
          Length = 97

 Score = 80.5 bits (197), Expect = 3e-15
 Identities = 44/97 (45%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
 Frame = +2

Query: 455 MTNLTTVPSPGELMSSPILRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXY-LY 631
           M NL   PSP ELM++P+ +                                    + LY
Sbjct: 1   MNNLPATPSPEELMTTPVFQAPETLSPQAEEASTALIAVVITVVFLTLLSVVTLIFFHLY 60

Query: 632 KNKGSYVTYEPAEGEPGAVLQMESNSAKGKEKEEYFI 742
           KNKGSYVTYEPAEGEP A+LQME++SAKG+EKEEYFI
Sbjct: 61  KNKGSYVTYEPAEGEPSAILQMETDSAKGREKEEYFI 97


>ref|NP_778157.2| small cell adhesion glycoprotein [Mus musculus].
          Length = 97

 Score = 80.5 bits (197), Expect = 3e-15
 Identities = 44/97 (45%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
 Frame = +2

Query: 455 MTNLTTVPSPGELMSSPILRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXY-LY 631
           M NL   PSP ELM++P+ +                                    + LY
Sbjct: 1   MNNLPATPSPEELMTTPVFQAPETLSPQAEEASTALIAVVITVVFLTLLSVVTLIFFHLY 60

Query: 632 KNKGSYVTYEPAEGEPGAVLQMESNSAKGKEKEEYFI 742
           KNKGSYVTYEPAEGEP A+LQME++SAKG+EKEEYFI
Sbjct: 61  KNKGSYVTYEPAEGEPSAILQMETDSAKGREKEEYFI 97


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,395,680
Number of extensions: 1108424
Number of successful extensions: 5859
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5786
Number of HSP's successfully gapped: 4
Length of query: 419
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 315
Effective length of database: 12,493,815
Effective search space: 3935551725
Effective search space used: 3935551725
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-014193
         (1257 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001026798.1| small cell adhesion glycoprotein [Homo sapie...    81   2e-15
Alignment   gi|NP_001029045.1| small cell adhesion glycoprotein [Homo sapie...    81   2e-15

>ref|NP_001026798.1| small cell adhesion glycoprotein [Homo sapiens].
          Length = 97

 Score = 81.3 bits (199), Expect = 2e-15
 Identities = 46/97 (47%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
 Frame = +2

Query: 455 MTNLTTVPSPGE-LMSSPILRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYLY 631
           MT+L T PSP E LM++PIL+                                    YLY
Sbjct: 1   MTSLLTTPSPREELMTTPILQPTEALSPEDGASTALIAVVITVVFLTLLSVVILIFFYLY 60

Query: 632 KNKGSYVTYEPAEGEPGAVLQMESNSAKGKEKEEYFI 742
           KNKGSYVTYEP EGEP A++QMES+ AKG EKEEYFI
Sbjct: 61  KNKGSYVTYEPTEGEPSAIVQMESDLAKGSEKEEYFI 97


>ref|NP_001029045.1| small cell adhesion glycoprotein [Homo sapiens].
          Length = 97

 Score = 81.3 bits (199), Expect = 2e-15
 Identities = 46/97 (47%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
 Frame = +2

Query: 455 MTNLTTVPSPGE-LMSSPILRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYLY 631
           MT+L T PSP E LM++PIL+                                    YLY
Sbjct: 1   MTSLLTTPSPREELMTTPILQPTEALSPEDGASTALIAVVITVVFLTLLSVVILIFFYLY 60

Query: 632 KNKGSYVTYEPAEGEPGAVLQMESNSAKGKEKEEYFI 742
           KNKGSYVTYEP EGEP A++QMES+ AKG EKEEYFI
Sbjct: 61  KNKGSYVTYEPTEGEPSAIVQMESDLAKGSEKEEYFI 97


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,167,506
Number of extensions: 1355153
Number of successful extensions: 7049
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6979
Number of HSP's successfully gapped: 2
Length of query: 419
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 314
Effective length of database: 14,835,944
Effective search space: 4658486416
Effective search space used: 4658486416
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-014193
         (1257 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr05                                                        1322   0.0  
gb|GL896161.1| Sus scrofa unplaced genomic scaffold chrU_scaffol...   230   1e-57
Sscrofa_Chr02                                                         139   4e-30

>Sscrofa_Chr05 
||          Length = 111506441

 Score = 1322 bits (667), Expect = 0.0
 Identities = 688/694 (99%), Gaps = 2/694 (0%)
 Strand = Plus / Minus

                                                                            
Query: 564      cagttgtcatcaccgtggtcttcctcaccctgctctctgtcgtggtcctgatcttctttt 623
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17310271 cagttgtcatcaccgtggtcttcctcaccctgctctctgtcgtggtcctgatcttctttt 17310212

                                                                            
Query: 624      acctgtacaagaacaaaggcagctacgtcacctacgaacctgccgaaggcgagcccggcg 683
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17310211 acctgtacaagaacaaaggcagctacgtcacctacgaacctgccgaaggcgagcccggcg 17310152

                                                                            
Query: 684      ccgtcctccagatggagagtaactccgccaagggcaaggagaaggaggaatacttcatct 743
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17310151 ccgtcctccagatggagagtaactccgccaagggcaaggagaaggaggaatacttcatct 17310092

                                                                            
Query: 744      aatggttcccgggccccaaggagctcatccaggctccagtgctgacacactatttattag 803
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17310091 aatggttcccgggccccaaggagctcatccaggctccagtgctgacacactatttattag 17310032

                                                                            
Query: 804      gtgagagttttatctgaaaccgatgagaagcatccatcgctgtgggcagaccggagctcc 863
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17310031 gtgagagttttatctgaaaccgatgagaagcatccatcgctgtgggcagaccggagctcc 17309972

                                                                            
Query: 864      ttccaggacccaggcccaaatgccagcatcacagacgccagggcccagagacccggagaa 923
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17309971 ttccaggacccaggcccaaatgccagcatcacagacgccagggcccagagacccggagaa 17309912

                                                                            
Query: 924      agcggctcacgaagtctcgagtcagacctttgtcatacagctggtgtttgtgattgagag 983
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 17309911 agcggctcacgaagtctcgagtcagacctttgtcatacagctggtgtttgtgatt--gag 17309854

                                                                            
Query: 984      cgacgaggtggagccgtaccaggcagcccccgggtactgcctggccatcgtcactttctc 1043
                |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 17309853 cgacgaggtggagccgtaccaggcagccaccgggtactgcctggccatcgtcactttctc 17309794

                                                                            
Query: 1044     tacagctcagagggaaggagagttgggggtcactggttgctcctgcgttccctacctggt 1103
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17309793 cacagctcagagggaaggagagttgggggtcactggttgctcctgcgttccctacctggt 17309734

                                                                            
Query: 1104     cacctagcgacagcccgagtgcaaatagtgtcccctggaagctcctcccagaggccggag 1163
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17309733 cacctagcgacagcccgagtgcaaatagtgtcccctggaagctcctcccagaggccggag 17309674

                                                                            
Query: 1164     cccacagtgaaagggcaggccgggaggggcaggagggccgtgaagacgtcactgctgaag 1223
                |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17309673 cccacagtgaaaggccaggccgggaggggcaggagggccgtgaagacgtcactgctgaag 17309614

                                                  
Query: 1224     gggcgggccacctcccttaacttgagcccttcct 1257
                ||||||||||||||||||||| ||||||||||||
Sbjct: 17309613 gggcgggccacctcccttaacctgagcccttcct 17309580



 Score =  712 bits (359), Expect = 0.0
 Identities = 412/435 (94%), Gaps = 8/435 (1%)
 Strand = Plus / Minus

                                                                            
Query: 1        tttgctgaaaattcaaataaacgtcgatggcggcgaaagcggacggagcccctcagcgct 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 17357644 tttgctgaaaattcaaataaacgtcgatggcggcgaaagcggacggagcccctcagccct 17357585

                                                                            
Query: 61       gggttcattcagagcccgcgctctcccagcctcgagacaggcgggggaggaagcggctcc 120
                |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 17357584 gggttcattcagagcccgcgctctcccagcctcgaggcaggcgggggaggaagcggctcc 17357525

                                                                            
Query: 121      ag--------taaagtgacaatcggagaaggaaaagcagcctttcctcccgggggagcag 172
                ||        ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17357524 agagggagtgtaaagtgacaatcggagaaggaaaagcagcctttcctcccgggggagcag 17357465

                                                                            
Query: 173      aggcggcccggcgggcagagggaacctgcagagggcggtttctctcctcttttcctgtcc 232
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17357464 aggcggcccggcgggcagagggaacctgcagagggcggtttctctcctcttttcctgtcc 17357405

                                                                            
Query: 233      cacccagtcggccagnnnnnnnnnnnnnactcccgaccggcctcggccgctaactccgcg 292
                |||||||||||||||             ||||||||||||||||||||||||||||||||
Sbjct: 17357404 cacccagtcggccagcccccccacccccactcccgaccggcctcggccgctaactccgcg 17357345

                                                                            
Query: 293      cgtctctccgccgctccctcacttcggtgtccccggcaggtccctgcgacccctgccgta 352
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17357344 cgtctctccgccgctccctcacttcggtgtccccggcaggtccctgcgacccctgccgta 17357285

                                                                            
Query: 353      gccgcccccgtcgagttgggaaggacgcgcggagcggcgcccggcccttcggcggcagcc 412
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17357284 gccgcccccgtcgagttgggaaggacgcgcggagcggcgcccggcccttcggcggcagcc 17357225

                               
Query: 413      cgtccgactggtaag 427
                |||||||||||||||
Sbjct: 17357224 cgtccgactggtaag 17357210



 Score =  159 bits (80), Expect = 4e-36
 Identities = 80/80 (100%)
 Strand = Plus / Minus

                                                                            
Query: 487      agaactgatgagcagcccaattctacggcccactgaggccccgtccccagaagctgaagc 546
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17311646 agaactgatgagcagcccaattctacggcccactgaggccccgtccccagaagctgaagc 17311587

                                    
Query: 547      cagcacagcactcattgcag 566
                ||||||||||||||||||||
Sbjct: 17311586 cagcacagcactcattgcag 17311567



 Score =  125 bits (63), Expect = 6e-26
 Identities = 63/63 (100%)
 Strand = Plus / Minus

                                                                            
Query: 426      agatctgcacctcccgtccacctgacgcgatgacgaacctcacaaccgtgccttctccag 485
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17356338 agatctgcacctcccgtccacctgacgcgatgacgaacctcacaaccgtgccttctccag 17356279

                   
Query: 486      gag 488
                |||
Sbjct: 17356278 gag 17356276


>gb|GL896161.1| Sus scrofa unplaced genomic scaffold chrU_scaffold529
          Length = 39155

 Score =  230 bits (116), Expect = 1e-57
 Identities = 116/116 (100%)
 Strand = Plus / Minus

                                                                        
Query: 130  acaatcggagaaggaaaagcagcctttcctcccgggggagcagaggcggcccggcgggca 189
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7121 acaatcggagaaggaaaagcagcctttcctcccgggggagcagaggcggcccggcgggca 7062

                                                                    
Query: 190  gagggaacctgcagagggcggtttctctcctcttttcctgtcccacccagtcggcc 245
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7061 gagggaacctgcagagggcggtttctctcctcttttcctgtcccacccagtcggcc 7006



 Score =  151 bits (76), Expect = 1e-33
 Identities = 79/80 (98%)
 Strand = Plus / Minus

                                                                        
Query: 1    tttgctgaaaattcaaataaacgtcgatggcggcgaaagcggacggagcccctcagcgct 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 7301 tttgctgaaaattcaaataaacgtcgatggcggcgaaagcggacggagcccctcagccct 7242

                                
Query: 61   gggttcattcagagcccgcg 80
            ||||||||||||||||||||
Sbjct: 7241 gggttcattcagagcccgcg 7222


>Sscrofa_Chr02 
||          Length = 162569375

 Score =  139 bits (70), Expect = 4e-30
 Identities = 109/122 (89%)
 Strand = Plus / Minus

                                                                             
Query: 1037      ctttctctacagctcagagggaaggagagttgggggtcactggttgctcctgcgttccct 1096
                 ||||||| |||| ||| | ||||||||||||||||||||||||||||||||  |||||||
Sbjct: 120065379 ctttctccacaggtcataaggaaggagagttgggggtcactggttgctcctctgttccct 120065320

                                                                             
Query: 1097      acctggtcacctagcgacagcccgagtgcaaatagtgtcccctggaagctcctcccagag 1156
                 ||||||||||||||  |||||| ||||||||||||  ||||  |||||||||||||||||
Sbjct: 120065319 acctggtcacctagtcacagcctgagtgcaaatagcatcccacggaagctcctcccagag 120065260

                   
Query: 1157      gc 1158
                 ||
Sbjct: 120065259 gc 120065258


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,538,426
Number of extensions: 160
Number of successful extensions: 160
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 9
Length of query: 1257
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1236
Effective length of database: 2,808,413,156
Effective search space: 3471198660816
Effective search space used: 3471198660816
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)