Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014202
(957 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001015540.1| pre-mRNA-splicing factor SPF27 [Bos taurus]. 434 e-122
>ref|NP_001015540.1| pre-mRNA-splicing factor SPF27 [Bos taurus].
Length = 225
Score = 434 bits (1115), Expect = e-122
Identities = 215/225 (95%), Positives = 215/225 (95%)
Frame = +2
Query: 95 MAGTGLVAGEVVVDALPYFDQGYEAPGVRXXXXXXXXXXTRRYRPTKNYLSYLTAPDYSA 274
MAGTGLVAGEVVVDALPYFDQGYEAPGVR TRRYRPTKNYLSYLTAPDYSA
Sbjct: 1 MAGTGLVAGEVVVDALPYFDQGYEAPGVREAAAALVEEETRRYRPTKNYLSYLTAPDYSA 60
Query: 275 FETDIMRNEFERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVR 454
FETDIMRNEFERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVR
Sbjct: 61 FETDIMRNEFERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVR 120
Query: 455 IENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLRE 634
IENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLRE
Sbjct: 121 IENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLRE 180
Query: 635 MESTWVSLVSKNYEIERTIVQLENELFQMKQQHGEANKENIRQDF 769
MESTWVSLVSKNYEIERTIVQLENELFQMKQQHGEANKENIRQDF
Sbjct: 181 MESTWVSLVSKNYEIERTIVQLENELFQMKQQHGEANKENIRQDF 225
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 31,121,689
Number of extensions: 703796
Number of successful extensions: 2063
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2058
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 217
Effective length of database: 14,306,398
Effective search space: 3104488366
Effective search space used: 3104488366
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-014202
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014202
(957 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533014.1| PREDICTED: similar to Breast carcinoma amplifie... 433 e-121
>ref|XP_533014.1| PREDICTED: similar to Breast carcinoma amplified sequence 2 homolog
(DNA amplified in mammary carcinoma-1 protein) [Canis
familiaris].
Length = 225
Score = 433 bits (1113), Expect = e-121
Identities = 214/225 (95%), Positives = 215/225 (95%)
Frame = +2
Query: 95 MAGTGLVAGEVVVDALPYFDQGYEAPGVRXXXXXXXXXXTRRYRPTKNYLSYLTAPDYSA 274
MAGTGLVAGEVVVDALPYFDQGYEAPGVR TRRYRPTKNYLSYLTAPDYSA
Sbjct: 1 MAGTGLVAGEVVVDALPYFDQGYEAPGVREAAAALVEEETRRYRPTKNYLSYLTAPDYSA 60
Query: 275 FETDIMRNEFERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVR 454
FETDIMRNEFERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVR
Sbjct: 61 FETDIMRNEFERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVR 120
Query: 455 IENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLRE 634
IENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLRE
Sbjct: 121 IENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLRE 180
Query: 635 MESTWVSLVSKNYEIERTIVQLENELFQMKQQHGEANKENIRQDF 769
MESTWVSLVSKNYEIERTIVQLENE+FQMKQQHGEANKENIRQDF
Sbjct: 181 MESTWVSLVSKNYEIERTIVQLENEIFQMKQQHGEANKENIRQDF 225
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 32,512,446
Number of extensions: 731935
Number of successful extensions: 2239
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2220
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 216
Effective length of database: 15,440,896
Effective search space: 3335233536
Effective search space used: 3335233536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014202
(957 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001925745.1| PREDICTED: pre-mRNA-splicing factor SPF27 [S... 434 e-122
Alignment gi|XP_003135237.2| PREDICTED: pre-mRNA-splicing factor SPF27-li... 374 e-104
>ref|XP_001925745.1| PREDICTED: pre-mRNA-splicing factor SPF27 [Sus scrofa].
Length = 225
Score = 434 bits (1115), Expect = e-122
Identities = 215/225 (95%), Positives = 215/225 (95%)
Frame = +2
Query: 95 MAGTGLVAGEVVVDALPYFDQGYEAPGVRXXXXXXXXXXTRRYRPTKNYLSYLTAPDYSA 274
MAGTGLVAGEVVVDALPYFDQGYEAPGVR TRRYRPTKNYLSYLTAPDYSA
Sbjct: 1 MAGTGLVAGEVVVDALPYFDQGYEAPGVREAAAALVEEETRRYRPTKNYLSYLTAPDYSA 60
Query: 275 FETDIMRNEFERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVR 454
FETDIMRNEFERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVR
Sbjct: 61 FETDIMRNEFERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVR 120
Query: 455 IENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLRE 634
IENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLRE
Sbjct: 121 IENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLRE 180
Query: 635 MESTWVSLVSKNYEIERTIVQLENELFQMKQQHGEANKENIRQDF 769
MESTWVSLVSKNYEIERTIVQLENELFQMKQQHGEANKENIRQDF
Sbjct: 181 MESTWVSLVSKNYEIERTIVQLENELFQMKQQHGEANKENIRQDF 225
>ref|XP_003135237.2| PREDICTED: pre-mRNA-splicing factor SPF27-like, partial [Sus
scrofa].
Length = 256
Score = 374 bits (960), Expect = e-104
Identities = 184/197 (93%), Positives = 186/197 (94%)
Frame = +2
Query: 125 VVVDALPYFDQGYEAPGVRXXXXXXXXXXTRRYRPTKNYLSYLTAPDYSAFETDIMRNEF 304
++ DALPYFDQGYEAPGVR TRRYRPTKNYLSYLTAPDYSAFETDIMRNEF
Sbjct: 60 LISDALPYFDQGYEAPGVREAAAALVEEETRRYRPTKNYLSYLTAPDYSAFETDIMRNEF 119
Query: 305 ERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIENLELMSQH 484
ERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIENLELMSQH
Sbjct: 120 ERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIENLELMSQH 179
Query: 485 GCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLREMESTWVSLVS 664
GCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLREMESTWVSLVS
Sbjct: 180 GCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLREMESTWVSLVS 239
Query: 665 KNYEIERTIVQLENELF 715
KNYEIERTIVQLENELF
Sbjct: 240 KNYEIERTIVQLENELF 256
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,976,023
Number of extensions: 451313
Number of successful extensions: 1342
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1338
Number of HSP's successfully gapped: 2
Length of query: 319
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 220
Effective length of database: 8,879,129
Effective search space: 1953408380
Effective search space used: 1953408380
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014202
(957 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080878.2| pre-mRNA-splicing factor SPF27 [Mus musculus]. 428 e-120
>ref|NP_080878.2| pre-mRNA-splicing factor SPF27 [Mus musculus].
Length = 225
Score = 428 bits (1101), Expect = e-120
Identities = 211/225 (93%), Positives = 214/225 (95%)
Frame = +2
Query: 95 MAGTGLVAGEVVVDALPYFDQGYEAPGVRXXXXXXXXXXTRRYRPTKNYLSYLTAPDYSA 274
MAGTGLVAGEVVVDALPYFDQGYEAPGVR TRRYRPTKNYLSYLTAPDYSA
Sbjct: 1 MAGTGLVAGEVVVDALPYFDQGYEAPGVREAAAALVEEETRRYRPTKNYLSYLTAPDYSA 60
Query: 275 FETDIMRNEFERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVR 454
FETDIMRNEFERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVR
Sbjct: 61 FETDIMRNEFERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVR 120
Query: 455 IENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLRE 634
IENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLRE
Sbjct: 121 IENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLRE 180
Query: 635 MESTWVSLVSKNYEIERTIVQLENELFQMKQQHGEANKENIRQDF 769
MES WVSLVSKNYEIERTIVQLENE++Q+KQQHGEANKENIRQDF
Sbjct: 181 MESNWVSLVSKNYEIERTIVQLENEIYQIKQQHGEANKENIRQDF 225
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 27,360,692
Number of extensions: 615300
Number of successful extensions: 1730
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1724
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 218
Effective length of database: 12,583,923
Effective search space: 2743295214
Effective search space used: 2743295214
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014202
(957 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005863.1| pre-mRNA-splicing factor SPF27 [Homo sapiens]. 428 e-120
>ref|NP_005863.1| pre-mRNA-splicing factor SPF27 [Homo sapiens].
Length = 225
Score = 428 bits (1101), Expect = e-120
Identities = 211/225 (93%), Positives = 214/225 (95%)
Frame = +2
Query: 95 MAGTGLVAGEVVVDALPYFDQGYEAPGVRXXXXXXXXXXTRRYRPTKNYLSYLTAPDYSA 274
MAGTGLVAGEVVVDALPYFDQGYEAPGVR TRRYRPTKNYLSYLTAPDYSA
Sbjct: 1 MAGTGLVAGEVVVDALPYFDQGYEAPGVREAAAALVEEETRRYRPTKNYLSYLTAPDYSA 60
Query: 275 FETDIMRNEFERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVR 454
FETDIMRNEFERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVR
Sbjct: 61 FETDIMRNEFERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVR 120
Query: 455 IENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLRE 634
IENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLRE
Sbjct: 121 IENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLRE 180
Query: 635 MESTWVSLVSKNYEIERTIVQLENELFQMKQQHGEANKENIRQDF 769
MES WVSLVSKNYEIERTIVQLENE++Q+KQQHGEANKENIRQDF
Sbjct: 181 MESNWVSLVSKNYEIERTIVQLENEIYQIKQQHGEANKENIRQDF 225
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 32,014,379
Number of extensions: 721810
Number of successful extensions: 2273
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2272
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 216
Effective length of database: 14,901,872
Effective search space: 3218804352
Effective search space used: 3218804352
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014202
(957 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 577 e-162
gb|GL896397.2| Sus scrofa unplaced genomic scaffold ChrUScaf4281 315 2e-83
Sscrofa_Chr01 125 5e-26
Sscrofa_Chr15 92 7e-16
>Sscrofa_Chr04
|| Length = 143465943
Score = 577 bits (291), Expect = e-162
Identities = 298/299 (99%), Gaps = 1/299 (0%)
Strand = Plus / Plus
Query: 646 ttgggtatccctggtcagtaagaattacgagattgaaaggactattgtacaattagaaaa 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116190692 ttgggtatccctggtcagtaagaattacgagattgaaaggactattgtacaattagaaaa 116190751
Query: 706 tgaactctttcaaatgaagcagcaacatggagaggcaaacaaagaaaacatacggcaaga 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116190752 tgaactctttcaaatgaagcagcaacatggagaggcaaacaaagaaaacatacggcaaga 116190811
Query: 766 cttctgaaaaagattaatttggcgggtaggaaggaaggctttcacagaagatcaggcatc 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116190812 cttctgaaaaagattaatttggcgggtaggaaggaaggctttcacagaagatcaggcatc 116190871
Query: 826 tgagctatgaggaacaataacatcctatgaaaatcatccaggttaaatgtggaaaccgta 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116190872 tgagctatgaggaacaataacatcctatgaaaatcatccaggttaaatgtggaaaccgta 116190931
Query: 886 gaatgtggactgttatatgtcatttgtacatttaagc-aaataaaaaatttcaaaatgg 943
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 116190932 gaatgtggactgttatatgtcatttgtacatttaagcaaaataaaaaatttcaaaatgg 116190990
Score = 371 bits (187), Expect = e-100
Identities = 187/187 (100%)
Strand = Plus / Plus
Query: 2 acgtcggcaacgtgattatgttaatatcgggtgcaggcctatttaagcgagcctgagccc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116180390 acgtcggcaacgtgattatgttaatatcgggtgcaggcctatttaagcgagcctgagccc 116180449
Query: 62 gcgcagactcagagaagtcaggcgagcccaagaatggcgggcaccggtttggtggctgga 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116180450 gcgcagactcagagaagtcaggcgagcccaagaatggcgggcaccggtttggtggctgga 116180509
Query: 122 gaggttgttgtagacgcgctgccgtattttgaccagggttatgaagcgcctggtgtgcgg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116180510 gaggttgttgtagacgcgctgccgtattttgaccagggttatgaagcgcctggtgtgcgg 116180569
Query: 182 gaagcgg 188
|||||||
Sbjct: 116180570 gaagcgg 116180576
Score = 315 bits (159), Expect = 2e-83
Identities = 162/163 (99%)
Strand = Plus / Plus
Query: 351 gatatgaacttccggccccttcctcaggtcagaaaaatgacattactgcatggcaagaat 410
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 116184865 gatatgaacttccggccccttcctcaggtcaaaaaaatgacattactgcatggcaagaat 116184924
Query: 411 gtgtaaacaattctatggctcagttggagcatcaggcagttcgaattgagaatctggaac 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116184925 gtgtaaacaattctatggctcagttggagcatcaggcagttcgaattgagaatctggaac 116184984
Query: 471 taatgtcacagcatggatgcaatgcctggaaagtatataatga 513
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116184985 taatgtcacagcatggatgcaatgcctggaaagtatataatga 116185027
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 187 ggccgcggcgttggtagaggaggaaactcgcaggtaccgacctaccaagaactacttgag 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116180684 ggccgcggcgttggtagaggaggaaactcgcaggtaccgacctaccaagaactacttgag 116180743
Query: 247 ctacctgacagccccagattattccgcttttgaa 280
||||||||||||||||||||||||||||||||||
Sbjct: 116180744 ctacctgacagccccagattattccgcttttgaa 116180777
Score = 165 bits (83), Expect = 6e-38
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 563 aggaaacatattcaagatttaaattggcaacgaaagaacatgcagctcacagctggatct 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116189423 aggaaacatattcaagatttaaattggcaacgaaagaacatgcagctcacagctggatct 116189482
Query: 623 aaattaagagaaatggagtcaac 645
|||||||||||||||||||||||
Sbjct: 116189483 aaattaagagaaatggagtcaac 116189505
Score = 141 bits (71), Expect = 8e-31
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 281 actgacataatgagaaatgaatttgaaagactggctgctcgacaaccaattgaattgctc 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116183849 actgacataatgagaaatgaatttgaaagactggctgctcgacaaccaattgaattgctc 116183908
Query: 341 agtatgaaacg 351
|||||||||||
Sbjct: 116183909 agtatgaaacg 116183919
Score = 103 bits (52), Expect = 2e-19
Identities = 52/52 (100%)
Strand = Plus / Plus
Query: 514 aaatctagttcatatgattgaacatgcccagaaagaactccagaaattaagg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116188758 aaatctagttcatatgattgaacatgcccagaaagaactccagaaattaagg 116188809
>gb|GL896397.2| Sus scrofa unplaced genomic scaffold ChrUScaf4281
Length = 67261
Score = 315 bits (159), Expect = 2e-83
Identities = 162/163 (99%)
Strand = Plus / Plus
Query: 351 gatatgaacttccggccccttcctcaggtcagaaaaatgacattactgcatggcaagaat 410
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 48683 gatatgaacttccggccccttcctcaggtcaaaaaaatgacattactgcatggcaagaat 48742
Query: 411 gtgtaaacaattctatggctcagttggagcatcaggcagttcgaattgagaatctggaac 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48743 gtgtaaacaattctatggctcagttggagcatcaggcagttcgaattgagaatctggaac 48802
Query: 471 taatgtcacagcatggatgcaatgcctggaaagtatataatga 513
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48803 taatgtcacagcatggatgcaatgcctggaaagtatataatga 48845
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 2 acgtcggcaacgtgattatgttaatatcgggtgcaggcctatttaagcgagcctgagccc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44268 acgtcggcaacgtgattatgttaatatcgggtgcaggcctatttaagcgagcctgagccc 44327
Query: 62 gcgcagactcagagaagtcaggcgagcccaagaatggcgggcaccg 107
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44328 gcgcagactcagagaagtcaggcgagcccaagaatggcgggcaccg 44373
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 187 ggccgcggcgttggtagaggaggaaactcgcaggtaccgacctaccaagaactacttgag 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44637 ggccgcggcgttggtagaggaggaaactcgcaggtaccgacctaccaagaactacttgag 44696
Query: 247 ctacctgacagccccagattattccgcttttgaa 280
||||||||||||||||||||||||||||||||||
Sbjct: 44697 ctacctgacagccccagattattccgcttttgaa 44730
Score = 165 bits (83), Expect = 6e-38
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 563 aggaaacatattcaagatttaaattggcaacgaaagaacatgcagctcacagctggatct 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53268 aggaaacatattcaagatttaaattggcaacgaaagaacatgcagctcacagctggatct 53327
Query: 623 aaattaagagaaatggagtcaac 645
|||||||||||||||||||||||
Sbjct: 53328 aaattaagagaaatggagtcaac 53350
Score = 157 bits (79), Expect = 1e-35
Identities = 86/87 (98%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 858 atcatccaggttaaatgtggaaaccgtagaatgtggactgttatatgtcatttgtacatt 917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53983 atcatccaggttaaatgtggaaaccgtagaatgtggactgttatatgtcatttgtacatt 54042
Query: 918 taagc-aaataaaaaatttcaaaatgg 943
||||| |||||||||||||||||||||
Sbjct: 54043 taagcaaaataaaaaatttcaaaatgg 54069
Score = 153 bits (77), Expect = 2e-34
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 646 ttgggtatccctggtcagtaagaattacgagattgaaaggactattgtacaattagaaaa 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53806 ttgggtatccctggtcagtaagaattacgagattgaaaggactattgtacaattagaaaa 53865
Query: 706 tgaactctttcaaatga 722
|||||||||||||||||
Sbjct: 53866 tgaactctttcaaatga 53882
Score = 141 bits (71), Expect = 8e-31
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 281 actgacataatgagaaatgaatttgaaagactggctgctcgacaaccaattgaattgctc 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47667 actgacataatgagaaatgaatttgaaagactggctgctcgacaaccaattgaattgctc 47726
Query: 341 agtatgaaacg 351
|||||||||||
Sbjct: 47727 agtatgaaacg 47737
Score = 111 bits (56), Expect = 7e-22
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 133 agacgcgctgccgtattttgaccagggttatgaagcgcctggtgtgcgggaagcgg 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44474 agacgcgctgccgtattttgaccagggttatgaagcgcctggtgtgcgggaagcgg 44529
Score = 103 bits (52), Expect = 2e-19
Identities = 52/52 (100%)
Strand = Plus / Plus
Query: 514 aaatctagttcatatgattgaacatgcccagaaagaactccagaaattaagg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52603 aaatctagttcatatgattgaacatgcccagaaagaactccagaaattaagg 52654
>Sscrofa_Chr01
|| Length = 315321322
Score = 125 bits (63), Expect = 5e-26
Identities = 87/95 (91%)
Strand = Plus / Plus
Query: 684 ggactattgtacaattagaaaatgaactctttcaaatgaagcagcaacatggagaggcaa 743
||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 95823180 ggactattgtacagttagaaaatgaactctttcaaatgaagcagcaatgtggaagggcaa 95823239
Query: 744 acaaagaaaacatacggcaagacttctgaaaaaga 778
|| ||||| ||||| ||||||||||||||||||||
Sbjct: 95823240 accaagaacacatatggcaagacttctgaaaaaga 95823274
>Sscrofa_Chr15
|| Length = 157681621
Score = 91.7 bits (46), Expect = 7e-16
Identities = 121/145 (83%), Gaps = 17/145 (11%)
Strand = Plus / Minus
Query: 562 aaggaaacatattcaagatttaaattggcaacgaaagaacatgc--------agctcaca 613
||||||||||| ||||||||||||||||||| |||||||||||| | ||||||
Sbjct: 120409796 aaggaaacatagtcaagatttaaattggcaatgaaagaacatgcaactcacaaactcaca 120409737
Query: 614 gctggatctaaattaagagaaatggagtcaacttgggtatccctggtcagtaagaattac 673
|||||||||| |||| ||||||||||||||||| |||||||| ||||||| |||
Sbjct: 120409736 gctggatcta----aagacaaatggagtcaacttggatatccctg----gtaagaa-tac 120409686
Query: 674 gagattgaaaggactattgtacaat 698
||||||||||||||| ||||||||
Sbjct: 120409685 aagattgaaaggactactgtacaat 120409661
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,431,263
Number of extensions: 263
Number of successful extensions: 263
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 259
Number of HSP's successfully gapped: 19
Length of query: 957
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 936
Effective length of database: 2,808,413,156
Effective search space: 2628674714016
Effective search space used: 2628674714016
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)