BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-014205
         (881 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001094628.1| vascular cell adhesion molecule 1 [Bos tauru...   343   1e-94
Alignment   gi|NP_776909.1| vascular cell adhesion molecule 1 [Bos taurus].      334   7e-92
Alignment   gi|NP_001193206.1| sialic acid-binding Ig-like lectin 10 [Bos t...    52   7e-07
Alignment   gi|XP_002695275.1| PREDICTED: sialic acid binding Ig-like lecti...    52   7e-07
Alignment   gi|XP_002684704.1| PREDICTED: cell adhesion molecule 2-like [Bo...    52   7e-07
Alignment   gi|XP_595936.4| PREDICTED: cell adhesion molecule 2 [Bos taurus].     52   7e-07

>ref|NP_001094628.1| vascular cell adhesion molecule 1 [Bos taurus].
          Length = 740

 Score =  343 bits (879), Expect = 1e-94
 Identities = 176/260 (67%), Positives = 204/260 (78%), Gaps = 4/260 (1%)
 Frame = +3

Query: 114 MPRNIVVIFGASNILWMVFAVSQNVKVEIFP-EDKMIAQIGDSASLTCSAPDCESSLSFS 290
           MP+ + VIFG SNILWMVF VSQ +KV++FP E K+ AQIGDS SLTCSA  CES  S S
Sbjct: 1   MPKKMFVIFGVSNILWMVFVVSQAIKVDMFPDESKIFAQIGDSVSLTCSATGCESP-SLS 59

Query: 291 WRTQIDSPLNGKVKTNGTRSTLVMNPVSFENEHSYLCTVSCGNLKGERGIQVEIYSFPKD 470
           WRTQ+DSPLNGKV+  GT STL+M+PVSF++EH YLCTV CG  K E+ IQVEIYSF K 
Sbjct: 60  WRTQMDSPLNGKVRNEGTTSTLIMDPVSFKDEHQYLCTVICGAAKLEKAIQVEIYSFSKG 119

Query: 471 PEIHWSSLPEVGKPVTVRCLVPDVYPVEKLEIELLKDNHSMVSQNFLELIDIKSKETKSL 650
           PEIH SS  EVGKPVTV C VPDVYP E+LEIELLK NH M  Q+FLE  + K++ETKSL
Sbjct: 120 PEIHLSSPAEVGKPVTVTCSVPDVYPFERLEIELLKGNHPMKVQDFLEPSEKKAQETKSL 179

Query: 651 EFTFTPTEEDIGKAIVCQATLII---DGQPSVKTTPEKMQVYISPKDPVISVNPSTSLQE 821
           + TF+PT+EDIG A+VCQATL I   D  P V+ T ++++VYISPKD  ISVNPST LQE
Sbjct: 180 DVTFSPTDEDIGTALVCQATLHIYDDDSPPKVRKTTKELEVYISPKDTAISVNPSTRLQE 239

Query: 822 SDSVMMTCTSEGLPAPQISW 881
            DSV MTCTS GLPAP+I W
Sbjct: 240 GDSVTMTCTSAGLPAPRILW 259



 Score =  254 bits (649), Expect = 7e-68
 Identities = 131/233 (56%), Positives = 164/233 (70%), Gaps = 3/233 (1%)
 Frame = +3

Query: 192  VEIFPEDKMIAQIGDSASLTCSAPDCESSLSFSWRTQIDSPLNGKVKTNGTRSTLVMNPV 371
            VEI P  ++ AQ+GDS  LTC   DCES  SFSWRTQIDSPLNGKV+  G++STL ++PV
Sbjct: 316  VEISPGPQIAAQVGDSVVLTCDVRDCESP-SFSWRTQIDSPLNGKVRREGSKSTLTLSPV 374

Query: 372  SFENEHSYLCTVSCGNLKGERGIQVEIYSFPKDPEIHWSSLPEVGKPVTVRCLVPDVYPV 551
            SFENEH YLCTV CG  K E+GIQVE+YSFP DPEI  S     G PVTV C VP+VYP 
Sbjct: 375  SFENEHFYLCTVICGQKKLEKGIQVELYSFPSDPEIEMSGPLVNGNPVTVSCKVPNVYPS 434

Query: 552  EKLEIELLKDNHSMVSQNFLELIDIKSKETKSLEFTFTPTEEDIGKAIVCQATLIIDG-- 725
            ++LEIEL K    M+++ FLE +  K+ ETKSLE TF PT ED G  +VC A L ID   
Sbjct: 435  DRLEIELFKGESIMMNKIFLEDVSKKALETKSLEMTFIPTVEDTGNVLVCLAQLPIDEME 494

Query: 726  -QPSVKTTPEKMQVYISPKDPVISVNPSTSLQESDSVMMTCTSEGLPAPQISW 881
             +P  + + + + V ++P+D  I V+PS++L+E  SV MTC+S GLPAP+I W
Sbjct: 495  FEPKQRQSTQILYVNVAPRDTTILVSPSSTLEEGSSVNMTCSSNGLPAPKILW 547


>ref|NP_776909.1| vascular cell adhesion molecule 1 [Bos taurus].
          Length = 739

 Score =  334 bits (856), Expect = 7e-92
 Identities = 173/260 (66%), Positives = 202/260 (77%), Gaps = 4/260 (1%)
 Frame = +3

Query: 114 MPRNIVVIFGASNILWMVFAVSQNVKVEIFP-EDKMIAQIGDSASLTCSAPDCESSLSFS 290
           M R + VIFGAS++LWMVFAVSQ  +++IFP E K+ AQIGDS SLTCS   CES  S S
Sbjct: 1   MLRKMFVIFGASDVLWMVFAVSQASQIDIFPSESKIFAQIGDSVSLTCSTTGCESP-SLS 59

Query: 291 WRTQIDSPLNGKVKTNGTRSTLVMNPVSFENEHSYLCTVSCGNLKGERGIQVEIYSFPKD 470
           WRTQIDSPLNGKVKT GT S L+M+PVSF++EH YLCT  C + K E+ I+VEIYSF KD
Sbjct: 60  WRTQIDSPLNGKVKTEGTTSMLIMDPVSFKDEHQYLCTAICKDKKLEKAIRVEIYSFSKD 119

Query: 471 PEIHWSSLPEVGKPVTVRCLVPDVYPVEKLEIELLKDNHSMVSQNFLELIDIKSKETKSL 650
           PEIH SS PEVGKPVTV C VPDVYP E+LEIELLK N  M  Q+FLE  + K++ETKSL
Sbjct: 120 PEIHLSSPPEVGKPVTVTCSVPDVYPFERLEIELLKGNRPMKVQDFLEPSEKKAQETKSL 179

Query: 651 EFTFTPTEEDIGKAIVCQATLII---DGQPSVKTTPEKMQVYISPKDPVISVNPSTSLQE 821
           + TF+PT+EDIG A+VCQATL I   D  P V+ T ++++VYISPKD  ISVNPST LQE
Sbjct: 180 DVTFSPTDEDIGTALVCQATLHIYDDDSPPKVRKTTKELEVYISPKDTAISVNPSTRLQE 239

Query: 822 SDSVMMTCTSEGLPAPQISW 881
            DSV MTC S GLPAP+I W
Sbjct: 240 GDSVTMTCASAGLPAPRILW 259



 Score =  238 bits (608), Expect = 4e-63
 Identities = 125/237 (52%), Positives = 161/237 (67%), Gaps = 3/237 (1%)
 Frame = +3

Query: 180  QNVKVEIFPEDKMIAQIGDSASLTCSAPDCESSLSFSWRTQIDSPLNGKVKTNGTRSTLV 359
            +N  VEI P  ++ AQ+GDS  LTC   DCES  SFSWRT IDSPLNG V++ G++STL 
Sbjct: 312  KNFTVEISPGPQIAAQVGDSVVLTCDVRDCESP-SFSWRTLIDSPLNGNVRSEGSKSTLT 370

Query: 360  MNPVSFENEHSYLCTVSCGNLKGERGIQVEIYSFPKDPEIHWSSLPEVGKPVTVRCLVPD 539
            ++PVSFENEH YLCTV CG  K E+ IQV+ YSFP +PEI  S     G PVTV C VP+
Sbjct: 371  LSPVSFENEHFYLCTVMCGQKKLEKRIQVKPYSFPSNPEIEMSGPLVSGNPVTVSCRVPN 430

Query: 540  VYPVEKLEIELLKDNHSMVSQNFLELIDIKSKETKSLEFTFTPTEEDIGKAIVCQATLII 719
            VYP ++LEIEL K    M+++ F + +  K+ ETKSLE TF PT EDIG  +VC A L I
Sbjct: 431  VYPSDQLEIELFKGESIMMNKTFSKDVSKKALETKSLEKTFIPTTEDIGNVLVCLARLPI 490

Query: 720  DG---QPSVKTTPEKMQVYISPKDPVISVNPSTSLQESDSVMMTCTSEGLPAPQISW 881
            D    +   + + + + V ++P+D  I V+PS+ L+E  SV MTC+S GLPAP+I W
Sbjct: 491  DEMEFELKQRQSTQTLYVNVAPRDTTILVSPSSILEEGSSVNMTCSSNGLPAPKILW 547


>ref|NP_001193206.1| sialic acid-binding Ig-like lectin 10 [Bos taurus].
          Length = 690

 Score = 52.0 bits (123), Expect = 7e-07
 Identities = 38/159 (23%), Positives = 72/159 (45%), Gaps = 13/159 (8%)
 Frame = +3

Query: 444 VEIYSFPKDPEIHWSSLPEVGKPVTVRCLVPDVYPVEKLEIELLKDNHSMVSQNFLELID 623
           +E+ +  + PEI+   + + G  VT+ C    ++  ++  +  L    + VS N     +
Sbjct: 134 LEVTALTQKPEIYVPEILQPGHQVTLFCAFNWIF--DECPVPTLSWIGNTVSPN-----E 186

Query: 624 IKSKETKSLEFTFTPTEEDIGKAIVCQATLIIDGQPSVKTTPEKMQVYISPKDPVISVN- 800
             S+ +   E TFTP  +D    + C+     +G  +  T   ++ V  +PKD VIS++ 
Sbjct: 187 ASSRTSYFSELTFTPRPQDHNTELTCRVDFSREGVSTENTV--RLSVAYAPKDLVISISY 244

Query: 801 ------------PSTSLQESDSVMMTCTSEGLPAPQISW 881
                       P   +Q+  S+ + CT++ LP   +SW
Sbjct: 245 TDEPALEPRGDSPHLEVQKGQSLRLLCTADSLPLATLSW 283


>ref|XP_002695275.1| PREDICTED: sialic acid binding Ig-like lectin 5-like [Bos taurus].
          Length = 690

 Score = 52.0 bits (123), Expect = 7e-07
 Identities = 38/159 (23%), Positives = 72/159 (45%), Gaps = 13/159 (8%)
 Frame = +3

Query: 444 VEIYSFPKDPEIHWSSLPEVGKPVTVRCLVPDVYPVEKLEIELLKDNHSMVSQNFLELID 623
           +E+ +  + PEI+   + + G  VT+ C    ++  ++  +  L    + VS N     +
Sbjct: 134 LEVTALTQKPEIYVPEILQPGHQVTLFCAFNWIF--DECPVPTLSWIGNTVSPN-----E 186

Query: 624 IKSKETKSLEFTFTPTEEDIGKAIVCQATLIIDGQPSVKTTPEKMQVYISPKDPVISVN- 800
             S+ +   E TFTP  +D    + C+     +G  +  T   ++ V  +PKD VIS++ 
Sbjct: 187 ASSRTSYFSELTFTPRPQDHNTELTCRVDFSREGVSTENTV--RLSVAYAPKDLVISISY 244

Query: 801 ------------PSTSLQESDSVMMTCTSEGLPAPQISW 881
                       P   +Q+  S+ + CT++ LP   +SW
Sbjct: 245 TDEPALEPRGDSPHLEVQKGQSLRLLCTADSLPLATLSW 283


>ref|XP_002684704.1| PREDICTED: cell adhesion molecule 2-like [Bos taurus].
          Length = 454

 Score = 52.0 bits (123), Expect = 7e-07
 Identities = 61/260 (23%), Positives = 107/260 (41%), Gaps = 4/260 (1%)
 Frame = +3

Query: 105 QLKMPRNIVVIFGASNILWMVFAVSQNVKVEIFPEDKMIAQIGDSASLTCSAPDCESSLS 284
           Q  + +N+ V+ G + IL     V QN                D+ SL  S P  + +L 
Sbjct: 84  QFPLTQNVTVVEGGTAIL--TCRVDQN----------------DNTSLQWSNP-AQQTLY 124

Query: 285 FSWRTQIDSPLNGKVKTNGTRSTLVMNPVSFENEHSYLCTVSCGNLKGERGIQVEIYSFP 464
           F  +  +       V+ +    ++ ++ VS  +E  Y C++    +K  +   + +   P
Sbjct: 125 FDDKKALRDNRIELVRASWHELSISVSDVSLSDEGQYTCSLFTMPVKTSKAY-LTVLGVP 183

Query: 465 KDPEIHWSSLPEV-GKPVTVRCLVPDVYPVEKLEIELLKDNHSMVSQNFLELIDIKSKE- 638
           + P+I   S P + G  + + C      P    +I   K++  +    +L+  D   K  
Sbjct: 184 EKPQISGFSSPVMEGDLMQLTCKTSGSKPAA--DIRWFKNDKEIKDVKYLKEEDANRKTF 241

Query: 639 TKSLEFTFTPTEEDIGKAIVCQATLIIDGQPSVKTTPE-KMQVYISPKDPVISVNPSTSL 815
           T S    F     D G A++C+         S+  TP+  MQV      P + + PST  
Sbjct: 242 TVSSTLDFRVDRSDDGVAVICRVD-----HESLNATPQVAMQVLEIHYTPSVKIIPSTPF 296

Query: 816 -QESDSVMMTCTSEGLPAPQ 872
            QE   +++TC S+G P P+
Sbjct: 297 PQEGQPLILTCESKGKPLPE 316


>ref|XP_595936.4| PREDICTED: cell adhesion molecule 2 [Bos taurus].
          Length = 454

 Score = 52.0 bits (123), Expect = 7e-07
 Identities = 61/260 (23%), Positives = 107/260 (41%), Gaps = 4/260 (1%)
 Frame = +3

Query: 105 QLKMPRNIVVIFGASNILWMVFAVSQNVKVEIFPEDKMIAQIGDSASLTCSAPDCESSLS 284
           Q  + +N+ V+ G + IL     V QN                D+ SL  S P  + +L 
Sbjct: 84  QFPLTQNVTVVEGGTAIL--TCRVDQN----------------DNTSLQWSNP-AQQTLY 124

Query: 285 FSWRTQIDSPLNGKVKTNGTRSTLVMNPVSFENEHSYLCTVSCGNLKGERGIQVEIYSFP 464
           F  +  +       V+ +    ++ ++ VS  +E  Y C++    +K  +   + +   P
Sbjct: 125 FDDKKALRDNRIELVRASWHELSISVSDVSLSDEGQYTCSLFTMPVKTSKAY-LTVLGVP 183

Query: 465 KDPEIHWSSLPEV-GKPVTVRCLVPDVYPVEKLEIELLKDNHSMVSQNFLELIDIKSKE- 638
           + P+I   S P + G  + + C      P    +I   K++  +    +L+  D   K  
Sbjct: 184 EKPQISGFSSPVMEGDLMQLTCKTSGSKPAA--DIRWFKNDKEIKDVKYLKEEDANRKTF 241

Query: 639 TKSLEFTFTPTEEDIGKAIVCQATLIIDGQPSVKTTPE-KMQVYISPKDPVISVNPSTSL 815
           T S    F     D G A++C+         S+  TP+  MQV      P + + PST  
Sbjct: 242 TVSSTLDFRVDRSDDGVAVICRVD-----HESLNATPQVAMQVLEIHYTPSVKIIPSTPF 296

Query: 816 -QESDSVMMTCTSEGLPAPQ 872
            QE   +++TC S+G P P+
Sbjct: 297 PQEGQPLILTCESKGKPLPE 316


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,805,323
Number of extensions: 903339
Number of successful extensions: 3104
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3063
Number of HSP's successfully gapped: 8
Length of query: 293
Length of database: 17,681,374
Length adjustment: 101
Effective length of query: 192
Effective length of database: 14,339,486
Effective search space: 2753181312
Effective search space used: 2753181312
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-014205
         (881 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001003298.1| vascular cell adhesion protein 1 precursor [...   325   3e-89
Alignment   gi|XP_537595.2| PREDICTED: similar to testicular cell adhesion ...    52   7e-07
Alignment   gi|XP_544804.2| PREDICTED: similar to immunoglobulin superfamil...    50   2e-06
Alignment   gi|NP_001019810.1| mucosal addressin cell adhesion molecule 1 [...    50   3e-06

>ref|NP_001003298.1| vascular cell adhesion protein 1 precursor [Canis lupus
           familiaris].
          Length = 739

 Score =  325 bits (833), Expect = 3e-89
 Identities = 169/259 (65%), Positives = 196/259 (75%), Gaps = 3/259 (1%)
 Frame = +3

Query: 114 MPRNIVVIFGASNILWMVFAVSQNVKVEIFPEDKMIAQIGDSASLTCSAPDCESSLSFSW 293
           MPR +VVIFGASNILWMVFAVSQ  K+EIF E ++ AQIGD  SLTCS   CE+  SFSW
Sbjct: 1   MPRKMVVIFGASNILWMVFAVSQASKMEIFLEPRVAAQIGDVISLTCSTTGCETP-SFSW 59

Query: 294 RTQIDSPLNGKVKTNGTRSTLVMNPVSFENEHSYLCTVSCGNLKGERGIQVEIYSFPKDP 473
           RTQIDSPLNGKVK  G  STL M+PVSF NEH+YLCT +CG+ K E+GIQVEIYSFPKDP
Sbjct: 60  RTQIDSPLNGKVKNEGNNSTLTMDPVSFNNEHAYLCTATCGSKKLEKGIQVEIYSFPKDP 119

Query: 474 EIHWSSLPEVGKPVTVRCLVPDVYPVEKLEIELLKDNHSMVSQNFLELIDIKSKETKSLE 653
           EI  S   EVGKPVTV CLV DVYP ++LE+ LL  N  + S++FLE ++ KS ETKSLE
Sbjct: 120 EIQLSGPLEVGKPVTVTCLVRDVYPFDRLEMNLLNGNDLLQSKDFLEPMEKKSLETKSLE 179

Query: 654 FTFTPTEEDIGKAIVCQATL---IIDGQPSVKTTPEKMQVYISPKDPVISVNPSTSLQES 824
            TFTPT EDIGK +VC+A L    ID +P  + T +++QVYISP++  ISV PS  LQE 
Sbjct: 180 VTFTPTNEDIGKGLVCRAQLHMDEIDFEPKERETTKELQVYISPRNTFISVTPSMRLQEG 239

Query: 825 DSVMMTCTSEGLPAPQISW 881
            SV MTC SEGLP PQI W
Sbjct: 240 GSVTMTCASEGLPPPQIFW 258



 Score =  255 bits (652), Expect = 3e-68
 Identities = 129/233 (55%), Positives = 167/233 (71%), Gaps = 3/233 (1%)
 Frame = +3

Query: 192  VEIFPEDKMIAQIGDSASLTCSAPDCESSLSFSWRTQIDSPLNGKVKTNGTRSTLVMNPV 371
            VEI P  ++IAQIGDS  LTC   DCES  SFSWRTQIDSPL+G VK  G +STL ++PV
Sbjct: 315  VEISPGPQIIAQIGDSVVLTCGVTDCESP-SFSWRTQIDSPLSGTVKVEGAKSTLTLSPV 373

Query: 372  SFENEHSYLCTVSCGNLKGERGIQVEIYSFPKDPEIHWSSLPEVGKPVTVRCLVPDVYPV 551
            + ENEHSYLCTV+CG+ K E+GI+V++YSFP+DPE+  S L   G PVTV C VP+VYP 
Sbjct: 374  NLENEHSYLCTVTCGHKKLEKGIKVDLYSFPRDPEVEMSGLLVDGNPVTVSCEVPNVYPS 433

Query: 552  EKLEIELLKDNHSMVSQNFLELIDIKSKETKSLEFTFTPTEEDIGKAIVCQATLIIDG-- 725
            ++LEIEL K    + S++FLE +D KS ETKSLE TF PT ED GK +VC A L ID   
Sbjct: 434  DRLEIELFKGETIIESKSFLEDMDKKSLETKSLEMTFIPTTEDTGKVLVCLAKLHIDEME 493

Query: 726  -QPSVKTTPEKMQVYISPKDPVISVNPSTSLQESDSVMMTCTSEGLPAPQISW 881
             +P  + + + + V ++P+D  + V+PS+ ++E   V MTC+S+GLPAP I W
Sbjct: 494  FEPKQRQSTQTLYVNVAPRDTTVVVSPSSIVEEGSPVNMTCSSDGLPAPNILW 546


>ref|XP_537595.2| PREDICTED: similar to testicular cell adhesion molecule 1 [Canis
           familiaris].
          Length = 535

 Score = 52.0 bits (123), Expect = 7e-07
 Identities = 56/239 (23%), Positives = 105/239 (43%), Gaps = 13/239 (5%)
 Frame = +3

Query: 171 AVSQNVKVEIFPEDKMIAQIGDS----ASLTCSAPDCESSLSFSWRTQIDSPLNGKVKTN 338
           A  +  +V ++P D+ + + G S     S TC  P      +F  +TQ+D     K    
Sbjct: 8   ATEEIFEVSVWP-DQALVKFGQSLMVNCSTTCPDPGPSGIETFLKKTQVDKGPQWK---- 62

Query: 339 GTRSTLVMNPVSFENEHSYL-CTVSCGNLKGERGIQVEIYSFPK----DPEIHWSSLPEV 503
                 ++  V+   E+S L C  SC  ++ +  + + +Y  P+    D +  W ++ E 
Sbjct: 63  ----EFLLEDVT---ENSILQCFFSCAGIQKDTSLGITVYQPPEQVILDLQPAWVAVNEA 115

Query: 504 GKPVTVRCLVPDVYPVEKLEIELLKDNHSMVSQNFLELIDIKSKETKSLEFTFTPTEEDI 683
               TV+C VP V P+E L + LL+ N  +  +NF+ L D+ S+  + +        ED 
Sbjct: 116 ---CTVKCQVPSVAPLENLTLTLLQGNQELHRKNFMNL-DVASQRAE-VTINVKAQREDD 170

Query: 684 GKAIVCQATLIID----GQPSVKTTPEKMQVYISPKDPVISVNPSTSLQESDSVMMTCT 848
                C+A L +     G     +  + ++++   + P I V+P   +  +++V    T
Sbjct: 171 RCNFSCRAELDLSSHGGGLFHSSSAIKVLRIFEFSQSPQIWVSPFLEIGMAEAVSCELT 229


>ref|XP_544804.2| PREDICTED: similar to immunoglobulin superfamily, member 4D [Canis
           familiaris].
          Length = 438

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 60/260 (23%), Positives = 106/260 (40%), Gaps = 4/260 (1%)
 Frame = +3

Query: 105 QLKMPRNIVVIFGASNILWMVFAVSQNVKVEIFPEDKMIAQIGDSASLTCSAPDCESSLS 284
           Q  + +N+ V+ G + IL     V QN                D+ SL  S P  + +L 
Sbjct: 28  QFPLTQNVTVVEGGTAIL--TCRVDQN----------------DNTSLQWSNP-AQQTLY 68

Query: 285 FSWRTQIDSPLNGKVKTNGTRSTLVMNPVSFENEHSYLCTVSCGNLKGERGIQVEIYSFP 464
           F  +  +       V+ +    ++ ++ VS  +E  Y C++    +K  +   + +   P
Sbjct: 69  FDDKKALRDNRIELVRASWHELSISVSDVSLSDEGQYTCSLFTMPVKTSKAY-LTVLGVP 127

Query: 465 KDPEIHWSSLPEV-GKPVTVRCLVPDVYPVEKLEIELLKDNHSMVSQNFLELIDIKSKE- 638
           + P+I   S P + G  + + C      P    +I   K++  +    +L+  D   K  
Sbjct: 128 EKPQISGFSSPVMEGDLMQLTCKTSGSKPAA--DIRWFKNDKEIKDVKYLKEEDANRKTF 185

Query: 639 TKSLEFTFTPTEEDIGKAIVCQATLIIDGQPSVKTTPE-KMQVYISPKDPVISVNPSTSL 815
           T S    F     D G  ++C+         S+  TP+  MQV      P + + PST  
Sbjct: 186 TVSSTLDFRVDRSDDGVTVICRVD-----HESLNATPQVAMQVLEIHYTPSVKIIPSTPF 240

Query: 816 -QESDSVMMTCTSEGLPAPQ 872
            QE   +++TC S+G P P+
Sbjct: 241 PQEGQPLILTCESKGKPLPE 260


>ref|NP_001019810.1| mucosal addressin cell adhesion molecule 1 [Canis lupus
           familiaris].
          Length = 378

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 56/237 (23%), Positives = 106/237 (44%), Gaps = 11/237 (4%)
 Frame = +3

Query: 192 VEIFPEDKMIA-QIGDSASLTCSAPDCESSL-SFSWRTQIDSPLNGKVKTNGTRSTLVMN 365
           +E+ P D ++A  +G S  LTC     +    S  WR  +D+ L G V+++   S L ++
Sbjct: 24  LEVEPPDSVVAVSMGGSRQLTCRLSCADHRAPSVQWRG-LDTSL-GAVRSDAGSSVLSVH 81

Query: 366 PVSFENEHSYLCTVSCGNLKGERGIQVEIYSFPKDPEIHWSSLPEVGK-PVTVRCLVPDV 542
             S     +++C  SCGNL  +R +Q+ +++FP   ++  S +  V K    V C   +V
Sbjct: 82  NASLSAAGTHVCVGSCGNLTLQRTVQLLVFAFP--DQLTVSPVALVAKQDREVACTAHNV 139

Query: 543 YPV--EKLEIELLKDNHSMVSQNFLELIDIKSKETKSLEFTFT------PTEEDIGKAIV 698
            P   E L + LL  +  +  +     ++ + ++ + L F  T        +     A+ 
Sbjct: 140 TPASPEALSLSLLLGDREL-GEALSREVEEEPQQGEDLLFQVTGRWLLPSLDTPTPPALH 198

Query: 699 CQATLIIDGQPSVKTTPEKMQVYISPKDPVISVNPSTSLQESDSVMMTCTSEGLPAP 869
           C+AT+ + G          +   ++ ++P     P T+  E+   + +  S   PAP
Sbjct: 199 CRATMTLPGVQLSHQRAIPVLRSLTSREP-----PGTTSPEATPELSSTRSSESPAP 250


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,364,339
Number of extensions: 935473
Number of successful extensions: 3163
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3129
Number of HSP's successfully gapped: 5
Length of query: 293
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 191
Effective length of database: 15,474,232
Effective search space: 2955578312
Effective search space used: 2955578312
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-014205
         (881 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_999056.1| vascular cell adhesion protein 1 [Sus scrofa].       514   e-146

>ref|NP_999056.1| vascular cell adhesion protein 1 [Sus scrofa].
          Length = 538

 Score =  514 bits (1323), Expect = e-146
 Identities = 254/256 (99%), Positives = 255/256 (99%)
 Frame = +3

Query: 114 MPRNIVVIFGASNILWMVFAVSQNVKVEIFPEDKMIAQIGDSASLTCSAPDCESSLSFSW 293
           MPRNIVVIFGASNILWMVFAVSQNVKVEIFPEDKMIAQIGDSASLTCSAPDCESSLSFSW
Sbjct: 1   MPRNIVVIFGASNILWMVFAVSQNVKVEIFPEDKMIAQIGDSASLTCSAPDCESSLSFSW 60

Query: 294 RTQIDSPLNGKVKTNGTRSTLVMNPVSFENEHSYLCTVSCGNLKGERGIQVEIYSFPKDP 473
           RTQIDSPLNGKVKTNGTRSTLVMNPVSFENEHSYLCTVSCGNLKGERGIQVEIYSFPKDP
Sbjct: 61  RTQIDSPLNGKVKTNGTRSTLVMNPVSFENEHSYLCTVSCGNLKGERGIQVEIYSFPKDP 120

Query: 474 EIHWSSLPEVGKPVTVRCLVPDVYPVEKLEIELLKDNHSMVSQNFLELIDIKSKETKSLE 653
           EIHWSSLPEVGKPVTVRCLVPDVYPVEKLEIELLKDNHSMVSQNFLELIDIKSKETKSLE
Sbjct: 121 EIHWSSLPEVGKPVTVRCLVPDVYPVEKLEIELLKDNHSMVSQNFLELIDIKSKETKSLE 180

Query: 654 FTFTPTEEDIGKAIVCQATLIIDGQPSVKTTPEKMQVYISPKDPVISVNPSTSLQESDSV 833
           FTFTPTEEDIGKAIVCQATLIIDGQPSVKTTPEKMQVYISPKDPVISVNPSTSLQE DS+
Sbjct: 181 FTFTPTEEDIGKAIVCQATLIIDGQPSVKTTPEKMQVYISPKDPVISVNPSTSLQEGDSM 240

Query: 834 MMTCTSEGLPAPQISW 881
           MMTCTSEGLPAPQISW
Sbjct: 241 MMTCTSEGLPAPQISW 256



 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 23/43 (53%), Positives = 34/43 (79%)
 Frame = +3

Query: 753 KMQVYISPKDPVISVNPSTSLQESDSVMMTCTSEGLPAPQISW 881
           ++ V ++P+D  ISVNPS++L+E  SV MTC+S+G PAP+I W
Sbjct: 303 ELTVQVAPRDTTISVNPSSTLEEGSSVNMTCSSDGFPAPKILW 345



 Score = 54.7 bits (130), Expect = 7e-08
 Identities = 55/239 (23%), Positives = 103/239 (43%), Gaps = 11/239 (4%)
 Frame = +3

Query: 180 QNVKVEIFPEDKMIA-------QIGDSASLTCSAPDCESSLSFSWRTQIDSPLNGKVKTN 338
           + ++V I P+D +I+       Q GDS  +TC++    +    SW  ++D   NG  +  
Sbjct: 213 EKMQVYISPKDPVISVNPSTSLQEGDSMMMTCTSEGLPAP-QISWSKKLD---NGDQQLL 268

Query: 339 GTRSTLVMNPVSFENEHSYLCTVSCGNLKGERGIQVEIYSFPKDPEI--HWSSLPEVGKP 512
              +TL +  +  E+   Y+C          + +++ +   P+D  I  + SS  E G  
Sbjct: 269 SGNATLTLIAMRMEDSGIYVCEGVNPVGTNRKEVELTVQVAPRDTTISVNPSSTLEEGSS 328

Query: 513 VTVRCLVPDVYPVEKL--EIELLKDNHSMVSQNFLELIDIKSKETKSLEFTFTPTEEDIG 686
           V + C   D +P  K+    +L   N   +S+N                 T T T+ +  
Sbjct: 329 VNMTCS-SDGFPAPKILWSKKLRDGNLEPLSEN--------------TTLTLTSTKMEDS 373

Query: 687 KAIVCQATLIIDGQPSVKTTPEKMQVYISPKDPVISVNPSTSLQESDSVMMTCTSEGLP 863
              VC+       Q  +     ++ +  +PKD  ++  PS S++E D+V+++CT   +P
Sbjct: 374 GIYVCEGI----NQAGINRKEVELIIQAAPKDLQLTAFPSESVKEGDTVIISCTCGNVP 428


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,701,005
Number of extensions: 575363
Number of successful extensions: 1779
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1764
Number of HSP's successfully gapped: 3
Length of query: 293
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 195
Effective length of database: 8,904,026
Effective search space: 1736285070
Effective search space used: 1736285070
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-014205
         (881 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_035823.3| vascular cell adhesion protein 1 precursor [Mus...   310   7e-85
Alignment   gi|NP_001139449.1| cell adhesion molecule 2 isoform 2 [Mus musc...    54   1e-07
Alignment   gi|NP_034623.1| intercellular adhesion molecule 1 precursor [Mu...    54   1e-07
Alignment   gi|NP_848836.2| cell adhesion molecule 2 isoform 1 [Mus musculu...    52   6e-07
Alignment   gi|NP_083743.2| testicular cell adhesion molecule 1 [Mus muscul...    51   1e-06

>ref|NP_035823.3| vascular cell adhesion protein 1 precursor [Mus musculus].
          Length = 739

 Score =  310 bits (795), Expect = 7e-85
 Identities = 161/259 (62%), Positives = 192/259 (74%), Gaps = 3/259 (1%)
 Frame = +3

Query: 114 MPRNIVVIFGASNILWMVFAVSQNVKVEIFPEDKMIAQIGDSASLTCSAPDCESSLSFSW 293
           MP  +V + GAS +LW++FAVSQ  K+EI PE K IAQIGDS +LTCS   CES L FSW
Sbjct: 1   MPVKMVAVLGASTVLWILFAVSQAFKIEISPEYKTIAQIGDSMALTCSTTGCESPL-FSW 59

Query: 294 RTQIDSPLNGKVKTNGTRSTLVMNPVSFENEHSYLCTVSCGNLKGERGIQVEIYSFPKDP 473
           RTQIDSPLN KV+T G++S L M PVSFENEHSYLCT +CG+ K ER I V+IYSFPKDP
Sbjct: 60  RTQIDSPLNAKVRTEGSKSVLTMEPVSFENEHSYLCTATCGSGKLERSIHVDIYSFPKDP 119

Query: 474 EIHWSSLPEVGKPVTVRCLVPDVYPVEKLEIELLKDNHSMVSQNFLELIDIKSKETKSLE 653
           EI +S   EVGKPVTV+CL PD+YPV +LEI+L K +  M  Q F      KS ETKSLE
Sbjct: 120 EIQFSGPLEVGKPVTVKCLAPDIYPVYRLEIDLFKGDQLMNRQEFSSEEMTKSLETKSLE 179

Query: 654 FTFTPTEEDIGKAIVCQATLIIDGQPSV---KTTPEKMQVYISPKDPVISVNPSTSLQES 824
            TFTP  EDIGKA+VC+A L ID   S    + T +++QVYISP++  ISV+PST LQE 
Sbjct: 180 VTFTPVIEDIGKALVCRAKLHIDQIDSTLKERETVKELQVYISPRNTTISVHPSTRLQEG 239

Query: 825 DSVMMTCTSEGLPAPQISW 881
            +V MTC+SEGLPAP+I W
Sbjct: 240 GAVTMTCSSEGLPAPEIFW 258



 Score =  226 bits (576), Expect = 2e-59
 Identities = 117/233 (50%), Positives = 159/233 (68%), Gaps = 3/233 (1%)
 Frame = +3

Query: 192  VEIFPEDKMIAQIGDSASLTCSAPDCESSLSFSWRTQIDSPLNGKVKTNGTRSTLVMNPV 371
            V+I P  ++ AQ+GDS  LTC+A  C+S  SFSWRTQ DSPLNG V+  G +STLV++ V
Sbjct: 315  VDISPGSQVAAQVGDSVVLTCAAIGCDSP-SFSWRTQTDSPLNGVVRNEGAKSTLVLSSV 373

Query: 372  SFENEHSYLCTVSCGNLKGERGIQVEIYSFPKDPEIHWSSLPEVGKPVTVRCLVPDVYPV 551
             FE+EHSYLC V+C     E+  QVE+YSFP+DP I  S     G+PVTV C VP+VYP 
Sbjct: 374  GFEDEHSYLCAVTCLQRTLEKRTQVEVYSFPEDPVIKMSGPLVHGRPVTVNCTVPNVYPF 433

Query: 552  EKLEIELLKDNHSMVSQNFLELIDIKSKETKSLEFTFTPTEEDIGKAIVCQATL---IID 722
            + LEIELLK   +++ + FLE + IKS ETK LE TF PT ED GK++VC A L    ++
Sbjct: 434  DHLEIELLKGETTLMKKYFLEEMGIKSLETKILETTFIPTIEDTGKSLVCLARLHSGEME 493

Query: 723  GQPSVKTTPEKMQVYISPKDPVISVNPSTSLQESDSVMMTCTSEGLPAPQISW 881
             +P  + + + + V ++PK+  I V+PS  L+E   V +TC+S+G+PAP+I W
Sbjct: 494  SEPKQRQSVQPLYVNVAPKETTIWVSPSPILEEGSPVNLTCSSDGIPAPKILW 546


>ref|NP_001139449.1| cell adhesion molecule 2 isoform 2 [Mus musculus].
          Length = 395

 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 65/274 (23%), Positives = 114/274 (41%), Gaps = 8/274 (2%)
 Frame = +3

Query: 75  FWNHCFLVTQ----QLKMPRNIVVIFGASNILWMVFAVSQNVKVEIFPEDKMIAQIGDSA 242
           F++ C L+ Q    Q  + +N+ V+ G + IL     V QN                D+ 
Sbjct: 11  FYSVCGLLLQGSQGQFPLTQNVTVVEGGTAIL--TCRVDQN----------------DNT 52

Query: 243 SLTCSAPDCESSLSFSWRTQIDSPLNGKVKTNGTRSTLVMNPVSFENEHSYLCTVSCGNL 422
           SL  S P  + +L F  +  +       V+ +    ++ ++ VS  +E  Y C++    +
Sbjct: 53  SLQWSNP-AQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEGQYTCSLFTMPV 111

Query: 423 KGERGIQVEIYSFPKDPEIHWSSLPEV-GKPVTVRCLVPDVYPVEKLEIELLKDNHSMVS 599
           K  +   + +   P+ P+I   S P + G  + + C      P    +I   K++  +  
Sbjct: 112 KTSKAY-LTVLGVPEKPQISGFSSPVMEGDLMQLTCKTSGSKPAA--DIRWFKNDKEIKD 168

Query: 600 QNFLELIDIKSKE-TKSLEFTFTPTEEDIGKAIVCQATLIIDGQPSVKTTPE-KMQVYIS 773
             +L+  D   K  T S    F     D G A++C+         S+  TP+  MQV   
Sbjct: 169 VKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAVICRVD-----HESLNATPQVAMQVLEI 223

Query: 774 PKDPVISVNPSTSL-QESDSVMMTCTSEGLPAPQ 872
              P + + PST   QE  ++ +TC S+G P P+
Sbjct: 224 HYTPSVKIIPSTPFPQEGQALTLTCESKGKPLPE 257


>ref|NP_034623.1| intercellular adhesion molecule 1 precursor [Mus musculus].
          Length = 537

 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 44/178 (24%), Positives = 78/178 (43%), Gaps = 1/178 (0%)
 Frame = +3

Query: 183 NVKVEIFPEDKMIAQIGDSASLTCSAPDCESSLSFSWRTQIDSPLNGKVKTNGTRSTLVM 362
           + +V I P +  + Q G S  + CS+  C+  LS    TQ    L  ++++        +
Sbjct: 26  DAQVSIHPREAFLPQ-GGSVQVNCSS-SCKEDLSLGLETQW---LKDELESGPNWKLFEL 80

Query: 363 NPVSFENEHSYLCTVSCGNLKGERGIQVEIYSFPKDPEIH-WSSLPEVGKPVTVRCLVPD 539
           + +    + S LC  +CG ++      + +YSFP+  E+    +  +VGK +T+RC V  
Sbjct: 81  SEIG--EDSSPLCFENCGTVQSSASATITVYSFPESVELRPLPAWQQVGKDLTLRCHVDG 138

Query: 540 VYPVEKLEIELLKDNHSMVSQNFLELIDIKSKETKSLEFTFTPTEEDIGKAIVCQATL 713
             P  +L   LL+    +  Q     +    K+ K + FT   +  D G    C+  L
Sbjct: 139 GAPRTQLSAVLLRGEEILSRQP----VGGHPKDPKEITFTVLASRGDHGANFSCRTEL 192


>ref|NP_848836.2| cell adhesion molecule 2 isoform 1 [Mus musculus].
          Length = 404

 Score = 52.0 bits (123), Expect = 6e-07
 Identities = 61/260 (23%), Positives = 107/260 (41%), Gaps = 4/260 (1%)
 Frame = +3

Query: 105 QLKMPRNIVVIFGASNILWMVFAVSQNVKVEIFPEDKMIAQIGDSASLTCSAPDCESSLS 284
           Q  + +N+ V+ G + IL     V QN                D+ SL  S P  + +L 
Sbjct: 34  QFPLTQNVTVVEGGTAIL--TCRVDQN----------------DNTSLQWSNP-AQQTLY 74

Query: 285 FSWRTQIDSPLNGKVKTNGTRSTLVMNPVSFENEHSYLCTVSCGNLKGERGIQVEIYSFP 464
           F  +  +       V+ +    ++ ++ VS  +E  Y C++    +K  +   + +   P
Sbjct: 75  FDDKKALRDNRIELVRASWHELSISVSDVSLSDEGQYTCSLFTMPVKTSKAY-LTVLGVP 133

Query: 465 KDPEIHWSSLPEV-GKPVTVRCLVPDVYPVEKLEIELLKDNHSMVSQNFLELIDIKSKE- 638
           + P+I   S P + G  + + C      P    +I   K++  +    +L+  D   K  
Sbjct: 134 EKPQISGFSSPVMEGDLMQLTCKTSGSKPAA--DIRWFKNDKEIKDVKYLKEEDANRKTF 191

Query: 639 TKSLEFTFTPTEEDIGKAIVCQATLIIDGQPSVKTTPE-KMQVYISPKDPVISVNPSTSL 815
           T S    F     D G A++C+         S+  TP+  MQV      P + + PST  
Sbjct: 192 TVSSTLDFRVDRSDDGVAVICRVD-----HESLNATPQVAMQVLEIHYTPSVKIIPSTPF 246

Query: 816 -QESDSVMMTCTSEGLPAPQ 872
            QE  ++ +TC S+G P P+
Sbjct: 247 PQEGQALTLTCESKGKPLPE 266


>ref|NP_083743.2| testicular cell adhesion molecule 1 [Mus musculus].
          Length = 548

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 57/242 (23%), Positives = 94/242 (38%), Gaps = 7/242 (2%)
 Frame = +3

Query: 165 VFAVSQNVKVEIFPEDKMIAQIGDSASLTCSA----PDCESSLSFSWRTQIDSPLNGKVK 332
           +F  SQN ++ +      + ++G +  ++C      P  E+        Q  SP +   +
Sbjct: 213 IFEFSQNPQIWV----PSLLEVGKAEIVSCEVTRVFPAQEAVFRMFLEDQELSPFSSWRE 268

Query: 333 TNGTRSTLVMNPVSFENEHSYLCTVSCGNLKGERGIQVEIYSFPKDPEIHWSSLPEVGKP 512
                S  +    + + E +  C VS G ++ +    V +YSFP        + P  G  
Sbjct: 269 DAAWASATIQAMETGDQELT--CLVSLGPVEQKTRKPVYVYSFPPPILEIEDAYPLAGTD 326

Query: 513 VTVRC---LVPDVYPVEKLEIELLKDNHSMVSQNFLELIDIKSKETKSLEFTFTPTEEDI 683
           V V C   ++    P  +L+  L   NHS                 K     FT  EED 
Sbjct: 327 VNVTCSGHVLTSPSPTLRLQGSL---NHSAPG--------------KPAWLLFTAREEDD 369

Query: 684 GKAIVCQATLIIDGQPSVKTTPEKMQVYISPKDPVISVNPSTSLQESDSVMMTCTSEGLP 863
           G+ + C+A+L + GQ  V+TT  ++ V   P+        +    E    M+ C  EG P
Sbjct: 370 GRTLSCEASLEVQGQRLVRTTESQLHVLYKPRFQESRCPGNQIWVEGMHQMLACIPEGNP 429

Query: 864 AP 869
            P
Sbjct: 430 TP 431


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,740,364
Number of extensions: 785288
Number of successful extensions: 2796
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2765
Number of HSP's successfully gapped: 6
Length of query: 293
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 192
Effective length of database: 12,583,923
Effective search space: 2416113216
Effective search space used: 2416113216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-014205
         (881 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001069.1| vascular cell adhesion protein 1 isoform a prec...   332   3e-91
Alignment   gi|NP_542413.1| vascular cell adhesion protein 1 isoform b prec...   332   3e-91
Alignment   gi|NP_001186763.1| vascular cell adhesion protein 1 isoform c p...   259   2e-69
Alignment   gi|NP_001161146.1| cell adhesion molecule 2 isoform 1 [Homo sap...    54   1e-07
Alignment   gi|NP_001161147.1| cell adhesion molecule 2 isoform 2 [Homo sap...    52   7e-07
Alignment   gi|NP_694854.2| cell adhesion molecule 2 isoform 3 [Homo sapien...    52   7e-07
Alignment   gi|NP_570116.2| mucosal addressin cell adhesion molecule 1 isof...    50   4e-06
Alignment   gi|NP_570118.1| mucosal addressin cell adhesion molecule 1 isof...    50   4e-06

>ref|NP_001069.1| vascular cell adhesion protein 1 isoform a precursor [Homo
           sapiens].
          Length = 739

 Score =  332 bits (851), Expect = 3e-91
 Identities = 171/259 (66%), Positives = 196/259 (75%), Gaps = 3/259 (1%)
 Frame = +3

Query: 114 MPRNIVVIFGASNILWMVFAVSQNVKVEIFPEDKMIAQIGDSASLTCSAPDCESSLSFSW 293
           MP  +VVI GASNILW++FA SQ  K+E  PE + +AQIGDS SLTCS   CES   FSW
Sbjct: 1   MPGKMVVILGASNILWIMFAASQAFKIETTPESRYLAQIGDSVSLTCSTTGCESPF-FSW 59

Query: 294 RTQIDSPLNGKVKTNGTRSTLVMNPVSFENEHSYLCTVSCGNLKGERGIQVEIYSFPKDP 473
           RTQIDSPLNGKV   GT STL MNPVSF NEHSYLCT +C + K E+GIQVEIYSFPKDP
Sbjct: 60  RTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDP 119

Query: 474 EIHWSSLPEVGKPVTVRCLVPDVYPVEKLEIELLKDNHSMVSQNFLELIDIKSKETKSLE 653
           EIH S   E GKP+TV+C V DVYP ++LEI+LLK +H M SQ FLE  D KS ETKSLE
Sbjct: 120 EIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLE 179

Query: 654 FTFTPTEEDIGKAIVCQATLII---DGQPSVKTTPEKMQVYISPKDPVISVNPSTSLQES 824
            TFTP  EDIGK +VC+A L I   D  P+V+   +++QVYISPK+ VISVNPST LQE 
Sbjct: 180 VTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPKNTVISVNPSTKLQEG 239

Query: 825 DSVMMTCTSEGLPAPQISW 881
            SV MTC+SEGLPAP+I W
Sbjct: 240 GSVTMTCSSEGLPAPEIFW 258



 Score =  259 bits (663), Expect = 2e-69
 Identities = 134/233 (57%), Positives = 167/233 (71%), Gaps = 3/233 (1%)
 Frame = +3

Query: 192  VEIFPEDKMIAQIGDSASLTCSAPDCESSLSFSWRTQIDSPLNGKVKTNGTRSTLVMNPV 371
            VEI P  ++ AQIGDS  LTCS   CES  SFSWRTQIDSPL+GKV++ GT STL ++PV
Sbjct: 315  VEISPGPRIAAQIGDSVMLTCSVMGCESP-SFSWRTQIDSPLSGKVRSEGTNSTLTLSPV 373

Query: 372  SFENEHSYLCTVSCGNLKGERGIQVEIYSFPKDPEIHWSSLPEVGKPVTVRCLVPDVYPV 551
            SFENEHSYLCTV+CG+ K E+GIQVE+YSFP+DPEI  S     G  VTV C VP VYP+
Sbjct: 374  SFENEHSYLCTVTCGHKKLEKGIQVELYSFPRDPEIEMSGGLVNGSSVTVSCKVPSVYPL 433

Query: 552  EKLEIELLKDNHSMVSQNFLELIDIKSKETKSLEFTFTPTEEDIGKAIVCQATLIIDG-- 725
            ++LEIELLK    + +  FLE  D+KS E KSLE TF PT ED GKA+VCQA L ID   
Sbjct: 434  DRLEIELLKGETILENIEFLEDTDMKSLENKSLEMTFIPTIEDTGKALVCQAKLHIDDME 493

Query: 726  -QPSVKTTPEKMQVYISPKDPVISVNPSTSLQESDSVMMTCTSEGLPAPQISW 881
             +P  + + + + V ++P+D  + V+PS+ L+E  SV MTC S+G PAP+I W
Sbjct: 494  FEPKQRQSTQTLYVNVAPRDTTVLVSPSSILEEGSSVNMTCLSQGFPAPKILW 546


>ref|NP_542413.1| vascular cell adhesion protein 1 isoform b precursor [Homo
           sapiens].
          Length = 647

 Score =  332 bits (851), Expect = 3e-91
 Identities = 171/259 (66%), Positives = 196/259 (75%), Gaps = 3/259 (1%)
 Frame = +3

Query: 114 MPRNIVVIFGASNILWMVFAVSQNVKVEIFPEDKMIAQIGDSASLTCSAPDCESSLSFSW 293
           MP  +VVI GASNILW++FA SQ  K+E  PE + +AQIGDS SLTCS   CES   FSW
Sbjct: 1   MPGKMVVILGASNILWIMFAASQAFKIETTPESRYLAQIGDSVSLTCSTTGCESPF-FSW 59

Query: 294 RTQIDSPLNGKVKTNGTRSTLVMNPVSFENEHSYLCTVSCGNLKGERGIQVEIYSFPKDP 473
           RTQIDSPLNGKV   GT STL MNPVSF NEHSYLCT +C + K E+GIQVEIYSFPKDP
Sbjct: 60  RTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDP 119

Query: 474 EIHWSSLPEVGKPVTVRCLVPDVYPVEKLEIELLKDNHSMVSQNFLELIDIKSKETKSLE 653
           EIH S   E GKP+TV+C V DVYP ++LEI+LLK +H M SQ FLE  D KS ETKSLE
Sbjct: 120 EIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLE 179

Query: 654 FTFTPTEEDIGKAIVCQATLII---DGQPSVKTTPEKMQVYISPKDPVISVNPSTSLQES 824
            TFTP  EDIGK +VC+A L I   D  P+V+   +++QVYISPK+ VISVNPST LQE 
Sbjct: 180 VTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPKNTVISVNPSTKLQEG 239

Query: 825 DSVMMTCTSEGLPAPQISW 881
            SV MTC+SEGLPAP+I W
Sbjct: 240 GSVTMTCSSEGLPAPEIFW 258



 Score =  159 bits (403), Expect = 2e-39
 Identities = 93/242 (38%), Positives = 139/242 (57%), Gaps = 3/242 (1%)
 Frame = +3

Query: 165 VFAVSQNVKVEIFPEDKMIAQIGDSASLTCSAPDCESSLSFSWRTQIDSPLNGKVKTNGT 344
           V+   +N  + + P  K+  Q G S ++TCS+    +   F W  ++D   NG ++    
Sbjct: 219 VYISPKNTVISVNPSTKL--QEGGSVTMTCSSEGLPAPEIF-WSKKLD---NGNLQHLSG 272

Query: 345 RSTLVMNPVSFENEHSYLCTVSCGNLKGERGIQVEIYSFPKDPEIHWSSLPEVGKPVTVR 524
            +TL +  +  E+   Y+C       K  + +++ + +FP+DPEI  S     G  VTV 
Sbjct: 273 NATLTLIAMRMEDSGIYVCEGVNLIGKNRKEVELIVQAFPRDPEIEMSGGLVNGSSVTVS 332

Query: 525 CLVPDVYPVEKLEIELLKDNHSMVSQNFLELIDIKSKETKSLEFTFTPTEEDIGKAIVCQ 704
           C VP VYP+++LEIELLK    + +  FLE  D+KS E KSLE TF PT ED GKA+VCQ
Sbjct: 333 CKVPSVYPLDRLEIELLKGETILENIEFLEDTDMKSLENKSLEMTFIPTIEDTGKALVCQ 392

Query: 705 ATLIIDG---QPSVKTTPEKMQVYISPKDPVISVNPSTSLQESDSVMMTCTSEGLPAPQI 875
           A L ID    +P  + + + + V ++P+D  + V+PS+ L+E  SV MTC S+G PAP+I
Sbjct: 393 AKLHIDDMEFEPKQRQSTQTLYVNVAPRDTTVLVSPSSILEEGSSVNMTCLSQGFPAPKI 452

Query: 876 SW 881
            W
Sbjct: 453 LW 454


>ref|NP_001186763.1| vascular cell adhesion protein 1 isoform c precursor [Homo
           sapiens].
          Length = 677

 Score =  259 bits (663), Expect = 2e-69
 Identities = 134/233 (57%), Positives = 167/233 (71%), Gaps = 3/233 (1%)
 Frame = +3

Query: 192 VEIFPEDKMIAQIGDSASLTCSAPDCESSLSFSWRTQIDSPLNGKVKTNGTRSTLVMNPV 371
           VEI P  ++ AQIGDS  LTCS   CES  SFSWRTQIDSPL+GKV++ GT STL ++PV
Sbjct: 253 VEISPGPRIAAQIGDSVMLTCSVMGCESP-SFSWRTQIDSPLSGKVRSEGTNSTLTLSPV 311

Query: 372 SFENEHSYLCTVSCGNLKGERGIQVEIYSFPKDPEIHWSSLPEVGKPVTVRCLVPDVYPV 551
           SFENEHSYLCTV+CG+ K E+GIQVE+YSFP+DPEI  S     G  VTV C VP VYP+
Sbjct: 312 SFENEHSYLCTVTCGHKKLEKGIQVELYSFPRDPEIEMSGGLVNGSSVTVSCKVPSVYPL 371

Query: 552 EKLEIELLKDNHSMVSQNFLELIDIKSKETKSLEFTFTPTEEDIGKAIVCQATLIIDG-- 725
           ++LEIELLK    + +  FLE  D+KS E KSLE TF PT ED GKA+VCQA L ID   
Sbjct: 372 DRLEIELLKGETILENIEFLEDTDMKSLENKSLEMTFIPTIEDTGKALVCQAKLHIDDME 431

Query: 726 -QPSVKTTPEKMQVYISPKDPVISVNPSTSLQESDSVMMTCTSEGLPAPQISW 881
            +P  + + + + V ++P+D  + V+PS+ L+E  SV MTC S+G PAP+I W
Sbjct: 432 FEPKQRQSTQTLYVNVAPRDTTVLVSPSSILEEGSSVNMTCLSQGFPAPKILW 484



 Score =  180 bits (456), Expect = 2e-45
 Identities = 93/145 (64%), Positives = 109/145 (75%), Gaps = 3/145 (2%)
 Frame = +3

Query: 456 SFPKDPEIHWSSLPEVGKPVTVRCLVPDVYPVEKLEIELLKDNHSMVSQNFLELIDIKSK 635
           SFPKDPEIH S   E GKP+TV+C V DVYP ++LEI+LLK +H M SQ FLE  D KS 
Sbjct: 52  SFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSL 111

Query: 636 ETKSLEFTFTPTEEDIGKAIVCQATLII---DGQPSVKTTPEKMQVYISPKDPVISVNPS 806
           ETKSLE TFTP  EDIGK +VC+A L I   D  P+V+   +++QVYISPK+ VISVNPS
Sbjct: 112 ETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPKNTVISVNPS 171

Query: 807 TSLQESDSVMMTCTSEGLPAPQISW 881
           T LQE  SV MTC+SEGLPAP+I W
Sbjct: 172 TKLQEGGSVTMTCSSEGLPAPEIFW 196


>ref|NP_001161146.1| cell adhesion molecule 2 isoform 1 [Homo sapiens].
          Length = 435

 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 65/274 (23%), Positives = 114/274 (41%), Gaps = 8/274 (2%)
 Frame = +3

Query: 75  FWNHCFLVTQ----QLKMPRNIVVIFGASNILWMVFAVSQNVKVEIFPEDKMIAQIGDSA 242
           F++ C L+ Q    Q  + +N+ V+ G + IL     V QN                D+ 
Sbjct: 11  FYSVCGLLLQGSQGQFPLTQNVTVVEGGTAIL--TCRVDQN----------------DNT 52

Query: 243 SLTCSAPDCESSLSFSWRTQIDSPLNGKVKTNGTRSTLVMNPVSFENEHSYLCTVSCGNL 422
           SL  S P  + +L F  +  +       V+ +    ++ ++ VS  +E  Y C++    +
Sbjct: 53  SLQWSNP-AQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEGQYTCSLFTMPV 111

Query: 423 KGERGIQVEIYSFPKDPEIHWSSLPEV-GKPVTVRCLVPDVYPVEKLEIELLKDNHSMVS 599
           K  +   + +   P+ P+I   S P + G  + + C      P    +I   K++  +  
Sbjct: 112 KTSKAY-LTVLGVPEKPQISGFSSPVMEGDLMQLTCKTSGSKPAA--DIRWFKNDKEIKD 168

Query: 600 QNFLELIDIKSKE-TKSLEFTFTPTEEDIGKAIVCQATLIIDGQPSVKTTPE-KMQVYIS 773
             +L+  D   K  T S    F     D G A++C+         S+  TP+  MQV   
Sbjct: 169 VKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAVICRVD-----HESLNATPQVAMQVLEI 223

Query: 774 PKDPVISVNPSTSL-QESDSVMMTCTSEGLPAPQ 872
              P + + PST   QE   +++TC S+G P P+
Sbjct: 224 HYTPSVKIIPSTPFPQEGQPLILTCESKGKPLPE 257


>ref|NP_001161147.1| cell adhesion molecule 2 isoform 2 [Homo sapiens].
          Length = 404

 Score = 52.0 bits (123), Expect = 7e-07
 Identities = 61/260 (23%), Positives = 107/260 (41%), Gaps = 4/260 (1%)
 Frame = +3

Query: 105 QLKMPRNIVVIFGASNILWMVFAVSQNVKVEIFPEDKMIAQIGDSASLTCSAPDCESSLS 284
           Q  + +N+ V+ G + IL     V QN                D+ SL  S P  + +L 
Sbjct: 34  QFPLTQNVTVVEGGTAIL--TCRVDQN----------------DNTSLQWSNP-AQQTLY 74

Query: 285 FSWRTQIDSPLNGKVKTNGTRSTLVMNPVSFENEHSYLCTVSCGNLKGERGIQVEIYSFP 464
           F  +  +       V+ +    ++ ++ VS  +E  Y C++    +K  +   + +   P
Sbjct: 75  FDDKKALRDNRIELVRASWHELSISVSDVSLSDEGQYTCSLFTMPVKTSKAY-LTVLGVP 133

Query: 465 KDPEIHWSSLPEV-GKPVTVRCLVPDVYPVEKLEIELLKDNHSMVSQNFLELIDIKSKE- 638
           + P+I   S P + G  + + C      P    +I   K++  +    +L+  D   K  
Sbjct: 134 EKPQISGFSSPVMEGDLMQLTCKTSGSKPAA--DIRWFKNDKEIKDVKYLKEEDANRKTF 191

Query: 639 TKSLEFTFTPTEEDIGKAIVCQATLIIDGQPSVKTTPE-KMQVYISPKDPVISVNPSTSL 815
           T S    F     D G A++C+         S+  TP+  MQV      P + + PST  
Sbjct: 192 TVSSTLDFRVDRSDDGVAVICRVD-----HESLNATPQVAMQVLEIHYTPSVKIIPSTPF 246

Query: 816 -QESDSVMMTCTSEGLPAPQ 872
            QE   +++TC S+G P P+
Sbjct: 247 PQEGQPLILTCESKGKPLPE 266


>ref|NP_694854.2| cell adhesion molecule 2 isoform 3 [Homo sapiens].
          Length = 437

 Score = 52.0 bits (123), Expect = 7e-07
 Identities = 61/260 (23%), Positives = 107/260 (41%), Gaps = 4/260 (1%)
 Frame = +3

Query: 105 QLKMPRNIVVIFGASNILWMVFAVSQNVKVEIFPEDKMIAQIGDSASLTCSAPDCESSLS 284
           Q  + +N+ V+ G + IL     V QN                D+ SL  S P  + +L 
Sbjct: 27  QFPLTQNVTVVEGGTAIL--TCRVDQN----------------DNTSLQWSNP-AQQTLY 67

Query: 285 FSWRTQIDSPLNGKVKTNGTRSTLVMNPVSFENEHSYLCTVSCGNLKGERGIQVEIYSFP 464
           F  +  +       V+ +    ++ ++ VS  +E  Y C++    +K  +   + +   P
Sbjct: 68  FDDKKALRDNRIELVRASWHELSISVSDVSLSDEGQYTCSLFTMPVKTSKAY-LTVLGVP 126

Query: 465 KDPEIHWSSLPEV-GKPVTVRCLVPDVYPVEKLEIELLKDNHSMVSQNFLELIDIKSKE- 638
           + P+I   S P + G  + + C      P    +I   K++  +    +L+  D   K  
Sbjct: 127 EKPQISGFSSPVMEGDLMQLTCKTSGSKPAA--DIRWFKNDKEIKDVKYLKEEDANRKTF 184

Query: 639 TKSLEFTFTPTEEDIGKAIVCQATLIIDGQPSVKTTPE-KMQVYISPKDPVISVNPSTSL 815
           T S    F     D G A++C+         S+  TP+  MQV      P + + PST  
Sbjct: 185 TVSSTLDFRVDRSDDGVAVICRVD-----HESLNATPQVAMQVLEIHYTPSVKIIPSTPF 239

Query: 816 -QESDSVMMTCTSEGLPAPQ 872
            QE   +++TC S+G P P+
Sbjct: 240 PQEGQPLILTCESKGKPLPE 259


>ref|NP_570116.2| mucosal addressin cell adhesion molecule 1 isoform a precursor
           [Homo sapiens].
          Length = 382

 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 52/207 (25%), Positives = 91/207 (43%), Gaps = 14/207 (6%)
 Frame = +3

Query: 147 SNILWMVFAVSQNVK-VEIFPEDKMIA-QIGDSASLTCSAPDCESSLSFSWRTQIDSPLN 320
           + +L ++   S  VK +++ P + ++A  +G S  LTC     +   S  WR  +D+ L 
Sbjct: 10  AGLLGLLLGQSLQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRG-LDTSL- 67

Query: 321 GKVKTNGTRSTLVMNPVSFENEHSYLCTVSCGNLKGERGIQVEIYSFPKDPEIHWSSLPE 500
           G V+++  RS L +   S     + +C  SCG    +  +Q+ +Y+FP    +  ++L  
Sbjct: 68  GAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPDQLTVSPAALVP 127

Query: 501 VGKPVTVRCLVPDVYPVE--KLEIELLKDNHSMVSQNFL--ELIDIKSKETKSLEFTFTP 668
            G P  V C    V PV+   L   LL     +     L  E+ + + +     +  F  
Sbjct: 128 -GDP-EVACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRV 185

Query: 669 TEE--------DIGKAIVCQATLIIDG 725
           TE          +  A+ CQAT+ + G
Sbjct: 186 TERWRLPPLGTPVPPALYCQATMRLPG 212


>ref|NP_570118.1| mucosal addressin cell adhesion molecule 1 isoform b precursor
           [Homo sapiens].
          Length = 295

 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 52/207 (25%), Positives = 91/207 (43%), Gaps = 14/207 (6%)
 Frame = +3

Query: 147 SNILWMVFAVSQNVK-VEIFPEDKMIA-QIGDSASLTCSAPDCESSLSFSWRTQIDSPLN 320
           + +L ++   S  VK +++ P + ++A  +G S  LTC     +   S  WR  +D+ L 
Sbjct: 10  AGLLGLLLGQSLQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRG-LDTSL- 67

Query: 321 GKVKTNGTRSTLVMNPVSFENEHSYLCTVSCGNLKGERGIQVEIYSFPKDPEIHWSSLPE 500
           G V+++  RS L +   S     + +C  SCG    +  +Q+ +Y+FP    +  ++L  
Sbjct: 68  GAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPDQLTVSPAALVP 127

Query: 501 VGKPVTVRCLVPDVYPVE--KLEIELLKDNHSMVSQNFL--ELIDIKSKETKSLEFTFTP 668
            G P  V C    V PV+   L   LL     +     L  E+ + + +     +  F  
Sbjct: 128 -GDP-EVACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRV 185

Query: 669 TEE--------DIGKAIVCQATLIIDG 725
           TE          +  A+ CQAT+ + G
Sbjct: 186 TERWRLPPLGTPVPPALYCQATMRLPG 212


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,846,281
Number of extensions: 928103
Number of successful extensions: 3379
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3319
Number of HSP's successfully gapped: 12
Length of query: 293
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 191
Effective length of database: 14,934,836
Effective search space: 2852553676
Effective search space used: 2852553676
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-014205
         (881 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr04                                                         618   e-174

>Sscrofa_Chr04 
||          Length = 143465943

 Score =  618 bits (312), Expect = e-174
 Identities = 312/312 (100%)
 Strand = Plus / Minus

                                                                             
Query: 457       ctttccccaaggacccagagattcactggagtagccttccagaagttgggaagccagtta 516
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129051567 ctttccccaaggacccagagattcactggagtagccttccagaagttgggaagccagtta 129051508

                                                                             
Query: 517       cagtcaggtgtctggtgcctgacgtttacccggttgaaaagttggagatagaattactga 576
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129051507 cagtcaggtgtctggtgcctgacgtttacccggttgaaaagttggagatagaattactga 129051448

                                                                             
Query: 577       aggacaaccattccatggtgtcccagaactttctggagcttatagacataaagtccaagg 636
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129051447 aggacaaccattccatggtgtcccagaactttctggagcttatagacataaagtccaagg 129051388

                                                                             
Query: 637       aaacgaagagtttggaatttacctttactcctaccgaagaggatattgggaaagctattg 696
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129051387 aaacgaagagtttggaatttacctttactcctaccgaagaggatattgggaaagctattg 129051328

                                                                             
Query: 697       tttgtcaagctacattaatcattgatggtcagccctcagtaaagacaacaccagaaaaaa 756
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129051327 tttgtcaagctacattaatcattgatggtcagccctcagtaaagacaacaccagaaaaaa 129051268

                             
Query: 757       tgcaagtctaca 768
                 ||||||||||||
Sbjct: 129051267 tgcaagtctaca 129051256



 Score =  545 bits (275), Expect = e-152
 Identities = 278/279 (99%)
 Strand = Plus / Minus

                                                                             
Query: 178       ctcaaaatgttaaagtcgagatcttccctgaagacaaaatgattgcgcagattggtgact 237
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129053867 ctcaaaatgttaaagtcgagatcttccctgaagacaaaatgattgcgcagattggtgact 129053808

                                                                             
Query: 238       ccgcttccctgacttgcagcgcaccggactgcgagtcctccctgtctttctcttggagaa 297
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129053807 ccgcttccctgacttgcagcgcaccggactgcgagtcctccctgtctttctcttggagaa 129053748

                                                                             
Query: 298       ctcagatagacagtcctctgaatggaaaagtgaaaactaacgggaccagatccacgctgg 357
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129053747 ctcagatagacagtcctctgaatggaaaagtgaaaactaacgggaccagatccacgctgg 129053688

                                                                             
Query: 358       tcatgaatcccgttagttttgagaatgaacactcctatctgtgcacagtctcctgcggga 417
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129053687 tcatgaatcccgttagttttgagaatgaacactcctatctgtgcacagtctcctgcggga 129053628

                                                        
Query: 418       atttgaaaggggaaagaggaatccaagtggagatctact 456
                 | |||||||||||||||||||||||||||||||||||||
Sbjct: 129053627 aattgaaaggggaaagaggaatccaagtggagatctact 129053589



 Score =  347 bits (175), Expect = 6e-93
 Identities = 175/175 (100%)
 Strand = Plus / Minus

                                                                             
Query: 3         ctcactgaacctcactggcttttggagctcaagactcttcctgagcactttcagggagga 62
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129054595 ctcactgaacctcactggcttttggagctcaagactcttcctgagcactttcagggagga 129054536

                                                                             
Query: 63        cacaaagaagggttttggaaccattgtttcctcgtcacacagcaacttaaaatgccgagg 122
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129054535 cacaaagaagggttttggaaccattgtttcctcgtcacacagcaacttaaaatgccgagg 129054476

                                                                        
Query: 123       aatatcgtcgtgatctttggagcctcaaatatactttggatggtgtttgccgttt 177
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129054475 aatatcgtcgtgatctttggagcctcaaatatactttggatggtgtttgccgttt 129054421



 Score =  216 bits (109), Expect = 2e-53
 Identities = 112/113 (99%)
 Strand = Plus / Minus

                                                                             
Query: 769       tctcacccaaggacccagttatatctgtgaatccctccacaagcctacaagaaagtgact 828
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 129049990 tctcacccaaggacccagttatatctgtgaatccctccacaagcctacaagaaggtgact 129049931

                                                                      
Query: 829       ccgtgatgatgacatgtaccagtgaaggtctaccagctccacagatttcctgg 881
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129049930 ccgtgatgatgacatgtaccagtgaaggtctaccagctccacagatttcctgg 129049878


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,994,422
Number of extensions: 189
Number of successful extensions: 189
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 4
Length of query: 881
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 860
Effective length of database: 2,808,413,156
Effective search space: 2415235314160
Effective search space used: 2415235314160
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)