Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014213
(1980 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_538839.2| PREDICTED: similar to NG22 protein isoform 2 [C... 852 0.0
Alignment gi|XP_542067.2| PREDICTED: similar to CTL2 protein isoform 1 [C... 432 e-128
Alignment gi|XP_868166.1| PREDICTED: similar to CTL2 protein isoform 2 [C... 432 e-128
Alignment gi|XP_547329.2| PREDICTED: similar to CTL2 gene [Canis familiar... 381 e-111
Alignment gi|XP_853474.1| PREDICTED: similar to CDW92 antigen isoform 2 i... 117 1e-29
Alignment gi|XP_867454.1| PREDICTED: similar to CDW92 antigen isoform 2 i... 117 1e-29
Alignment gi|XP_867445.1| PREDICTED: similar to CDW92 antigen isoform 2 i... 117 1e-29
Alignment gi|XP_532022.2| PREDICTED: similar to CDW92 antigen isoform 1 i... 117 1e-29
Alignment gi|XP_547273.2| PREDICTED: similar to CG1311-PA [Canis familiar... 81 3e-15
>ref|XP_538839.2| PREDICTED: similar to NG22 protein isoform 2 [Canis familiaris].
Length = 711
Score = 852 bits (2200), Expect(2) = 0.0
Identities = 417/565 (73%), Positives = 450/565 (79%), Gaps = 4/565 (0%)
Frame = +2
Query: 56 MGEKQDPDKAYGKPAKYDPSFRGPIRNRSCTDIICCVLFFVFILGYIAVGLVAWVYGDPQ 235
MG KQD ++AYGKPAKYDPSFRGPIRNRSCTD+ICCVLF +FILGYI VG+VAWVYGDP+
Sbjct: 1 MGGKQDRNEAYGKPAKYDPSFRGPIRNRSCTDVICCVLFLLFILGYIVVGIVAWVYGDPR 60
Query: 236 QVLYPRNSSGAYCGIGENKDKPYLLYFNIFSCVLTTNIIAVAQNGLDCPTPQVCVSSCPA 415
QVLYPRNS+GAYCG+G NKDKPYLLYFNIFSCVLT N+I VA+NGL CPTPQVCVSSCP
Sbjct: 61 QVLYPRNSTGAYCGVGANKDKPYLLYFNIFSCVLTANVITVAENGLQCPTPQVCVSSCPE 120
Query: 416 VSWTVATNQLSQTVGQVFYAANRSFCLPGVPGDMPVHQSLSQELCPSFLLPSSPALGRCF 595
+WTV NQLS+ VG+VFY ANR+FCLPGVP DMPV QSL QELCP FLLPS+PALGRC
Sbjct: 121 NAWTVEVNQLSEKVGEVFYTANRNFCLPGVPWDMPVIQSLQQELCPGFLLPSTPALGRCV 180
Query: 596 PWPNSTVPEVPEIS-NTSISQGISGLLDSLNARDISVKIFEDFAQSWYWIXXXXXXXXXX 772
P+ NST PE+P IS NTSISQGISGL D LNARDISVKIFEDFAQSWYWI
Sbjct: 181 PFLNSTPPELPGISSNTSISQGISGLFDILNARDISVKIFEDFAQSWYWILTALGVALVL 240
Query: 773 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYHCWNEYRLLRDKGASISQLGFTTNLSAY 952
YHCW EYR+LRD+GASI+QLG TTNLSAY
Sbjct: 241 SLLFILLLRLVAGPLVLVLILGVLGVLAYGIYHCWEEYRVLRDEGASITQLGITTNLSAY 300
Query: 953 SSVQETWXXXXXXXXXXXXXXXXXXXXXXXXXXXAIALLEEASRAVGQMMSTLFYPLVTF 1132
+VQETW AIALLEEAS+AVG MMSTLFYPLVTF
Sbjct: 301 RNVQETWLAALIVLAVLEGILLLMLIFLRQRIRIAIALLEEASKAVGHMMSTLFYPLVTF 360
Query: 1133 VLLLVCIAYWAMTAL---YLATSGQPQYVLWAPNVSLAGCEKVMMNTSCDPMNQPVNSTC 1303
VLLL+CI YWAMTAL YLATSGQPQYVLWAPN SL C KV MNTSC+PM QPVNS+C
Sbjct: 361 VLLLICIVYWAMTALSSGYLATSGQPQYVLWAPNASLPSCGKVQMNTSCNPMAQPVNSSC 420
Query: 1304 PGLMCVFQGYLSTGLVQRSLFNLQIYGVLGLFWTINWVLALGQCVLAGAFASFYWAFHKP 1483
PGL C+FQ Y STGLVQRSLFNLQIY VL LFWT+NWVLALGQCVLAGAFASFYWAF KP
Sbjct: 421 PGLRCIFQSYSSTGLVQRSLFNLQIYVVLALFWTVNWVLALGQCVLAGAFASFYWAFQKP 480
Query: 1484 RDIPTFPLSSAFIRTLRYHTGSLAFGALILTLVQIARAILEYIDHKLRGVQNPVARCIMC 1663
+DIPTFPLSSAFIRTLRYHTGSLAFGALILTLVQ+AR ILEYID+KLRG QNP+ARCIMC
Sbjct: 481 QDIPTFPLSSAFIRTLRYHTGSLAFGALILTLVQMARVILEYIDNKLRGSQNPMARCIMC 540
Query: 1664 CFKCCLWCLEKFIKFLNRNAYIMVS 1738
CFKCCLWCLEKFIKFLNRNAYIM++
Sbjct: 541 CFKCCLWCLEKFIKFLNRNAYIMIA 565
Score = 52.8 bits (125), Expect(2) = 0.0
Identities = 24/25 (96%), Positives = 25/25 (100%)
Frame = +3
Query: 1842 IAIYGKNFCVSAKNAFMLLMRNIVR 1916
IA+YGKNFCVSAKNAFMLLMRNIVR
Sbjct: 564 IAVYGKNFCVSAKNAFMLLMRNIVR 588
>ref|XP_542067.2| PREDICTED: similar to CTL2 protein isoform 1 [Canis familiaris].
Length = 710
Score = 432 bits (1111), Expect(2) = e-128
Identities = 238/580 (41%), Positives = 317/580 (54%), Gaps = 21/580 (3%)
Frame = +2
Query: 62 EKQDPDKAYGKPAKYDPSFRGPIRNRSCTDIICCVLFFVFILGYIAVGLVAWVYGDPQQV 241
E + D AYG P KYDP+F+GPI +R CTDIICCV + I+GY+AVG++AW +GDP++V
Sbjct: 2 EVERKDVAYGTPQKYDPTFKGPIYHRGCTDIICCVFLLLAIVGYVAVGIIAWTHGDPRKV 61
Query: 242 LYPRNSSGAYCGIG--ENKDKPYLLYFNIFSCVLTTNIIAVAQNGLDCPTPQVCVSSCPA 415
+YP +S G +CG +N +KP+L YFNI C ++ CPTPQ+CV CP
Sbjct: 62 IYPTDSRGEFCGQKGTKNANKPFLFYFNIVKCASPLVLLE-----FQCPTPQICVEKCPD 116
Query: 416 VSWTVATNQLSQTVGQVFYAANRSFCLPGVPGDMPVHQSLSQELCPSFLLPSSPALGRCF 595
T Q SQ + + FC+PG + V + L CP+ L+PS P RCF
Sbjct: 117 RYLTYLNAQKSQD-----FEYYKQFCVPGFQNNKGVAEVLRDGDCPAVLIPSKPLARRCF 171
Query: 596 PW----------PNSTVPEVPEISNTSISQGISGLLDS---LNARDISVKIFEDFAQSWY 736
P N T E +I++ + G + L AR ++++IFED+ SWY
Sbjct: 172 PAIHAHKGVLMVGNETTYEDGHGFRKNITELVEGAKKANGVLEARQLAMRIFEDYTVSWY 231
Query: 737 WIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYHCWNEYRLLR-DKGAS 913
WI +HC+ EY LR + G+
Sbjct: 232 WIVIGLVIAMLMSLLFIVLLRFLAGIMVWVMIIMVILVLGYGIFHCYMEYMRLRGEAGSD 291
Query: 914 IS--QLGFTTNLSAYSSVQETWXXXXXXXXXXXXXXXXXXXXXXXXXXXAIALLEEASRA 1087
IS LGF T+L Y +++TW AIAL++EASRA
Sbjct: 292 ISLVDLGFQTDLRVYLHLRQTWMAFMIILSILEVIIILLLIFLRKRILIAIALIKEASRA 351
Query: 1088 VGQMMSTLFYPLVTFVLLLVCIAYWAMTALYLATSGQPQYVLWAPNVSLAGCEKVMMNTS 1267
VG +M +L YPLVTF+LL +CIAYWA TA++L+TS + Y ++ C+ +
Sbjct: 352 VGYVMCSLLYPLVTFLLLCLCIAYWASTAVFLSTSNEAVYKIFDDGT----CQ--FAGKT 405
Query: 1268 CDP---MNQPVNSTCPGLMCVFQGYLSTGLVQRSLFNLQIYGVLGLFWTINWVLALGQCV 1438
C+P + + CPG C F Y R+L LQI+ FW N+VLALGQ
Sbjct: 406 CNPETFASSNESRLCPGAHCQFAFYGGESGYHRALLGLQIFNAFMFFWLANFVLALGQVT 465
Query: 1439 LAGAFASFYWAFHKPRDIPTFPLSSAFIRTLRYHTGSLAFGALILTLVQIARAILEYIDH 1618
LAGAFAS+YWA HKP D+P FPL SAF R LRYHTGSLAFGALIL +VQI R +LEY+D
Sbjct: 466 LAGAFASYYWALHKPDDLPAFPLFSAFGRALRYHTGSLAFGALILAIVQIIRVMLEYLDQ 525
Query: 1619 KLRGVQNPVARCIMCCFKCCLWCLEKFIKFLNRNAYIMVS 1738
+L+ +N A+ +M C KCC WCLEKFI+FLNRNAYIM++
Sbjct: 526 RLKAAENKFAKFLMTCLKCCFWCLEKFIRFLNRNAYIMIA 565
Score = 45.8 bits (107), Expect(2) = e-128
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = +3
Query: 1842 IAIYGKNFCVSAKNAFMLLMRNIVR 1916
IAIYG NFC SA+NAF LLMRNI+R
Sbjct: 564 IAIYGTNFCTSARNAFFLLMRNIIR 588
>ref|XP_868166.1| PREDICTED: similar to CTL2 protein isoform 2 [Canis familiaris].
Length = 704
Score = 432 bits (1111), Expect(2) = e-128
Identities = 238/580 (41%), Positives = 317/580 (54%), Gaps = 21/580 (3%)
Frame = +2
Query: 62 EKQDPDKAYGKPAKYDPSFRGPIRNRSCTDIICCVLFFVFILGYIAVGLVAWVYGDPQQV 241
E + D AYG P KYDP+F+GPI +R CTDIICCV + I+GY+AVG++AW +GDP++V
Sbjct: 2 EVERKDVAYGTPQKYDPTFKGPIYHRGCTDIICCVFLLLAIVGYVAVGIIAWTHGDPRKV 61
Query: 242 LYPRNSSGAYCGIG--ENKDKPYLLYFNIFSCVLTTNIIAVAQNGLDCPTPQVCVSSCPA 415
+YP +S G +CG +N +KP+L YFNI C ++ CPTPQ+CV CP
Sbjct: 62 IYPTDSRGEFCGQKGTKNANKPFLFYFNIVKCASPLVLLE-----FQCPTPQICVEKCPD 116
Query: 416 VSWTVATNQLSQTVGQVFYAANRSFCLPGVPGDMPVHQSLSQELCPSFLLPSSPALGRCF 595
T Q SQ + + FC+PG + V + L CP+ L+PS P RCF
Sbjct: 117 RYLTYLNAQKSQD-----FEYYKQFCVPGFQNNKGVAEVLRDGDCPAVLIPSKPLARRCF 171
Query: 596 PW----------PNSTVPEVPEISNTSISQGISGLLDS---LNARDISVKIFEDFAQSWY 736
P N T E +I++ + G + L AR ++++IFED+ SWY
Sbjct: 172 PAIHAHKGVLMVGNETTYEDGHGFRKNITELVEGAKKANGVLEARQLAMRIFEDYTVSWY 231
Query: 737 WIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYHCWNEYRLLR-DKGAS 913
WI +HC+ EY LR + G+
Sbjct: 232 WIVIGLVIAMLMSLLFIVLLRFLAGIMVWVMIIMVILVLGYGIFHCYMEYMRLRGEAGSD 291
Query: 914 IS--QLGFTTNLSAYSSVQETWXXXXXXXXXXXXXXXXXXXXXXXXXXXAIALLEEASRA 1087
IS LGF T+L Y +++TW AIAL++EASRA
Sbjct: 292 ISLVDLGFQTDLRVYLHLRQTWMAFMIILSILEVIIILLLIFLRKRILIAIALIKEASRA 351
Query: 1088 VGQMMSTLFYPLVTFVLLLVCIAYWAMTALYLATSGQPQYVLWAPNVSLAGCEKVMMNTS 1267
VG +M +L YPLVTF+LL +CIAYWA TA++L+TS + Y ++ C+ +
Sbjct: 352 VGYVMCSLLYPLVTFLLLCLCIAYWASTAVFLSTSNEAVYKIFDDGT----CQ--FAGKT 405
Query: 1268 CDP---MNQPVNSTCPGLMCVFQGYLSTGLVQRSLFNLQIYGVLGLFWTINWVLALGQCV 1438
C+P + + CPG C F Y R+L LQI+ FW N+VLALGQ
Sbjct: 406 CNPETFASSNESRLCPGAHCQFAFYGGESGYHRALLGLQIFNAFMFFWLANFVLALGQVT 465
Query: 1439 LAGAFASFYWAFHKPRDIPTFPLSSAFIRTLRYHTGSLAFGALILTLVQIARAILEYIDH 1618
LAGAFAS+YWA HKP D+P FPL SAF R LRYHTGSLAFGALIL +VQI R +LEY+D
Sbjct: 466 LAGAFASYYWALHKPDDLPAFPLFSAFGRALRYHTGSLAFGALILAIVQIIRVMLEYLDQ 525
Query: 1619 KLRGVQNPVARCIMCCFKCCLWCLEKFIKFLNRNAYIMVS 1738
+L+ +N A+ +M C KCC WCLEKFI+FLNRNAYIM++
Sbjct: 526 RLKAAENKFAKFLMTCLKCCFWCLEKFIRFLNRNAYIMIA 565
Score = 45.8 bits (107), Expect(2) = e-128
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = +3
Query: 1842 IAIYGKNFCVSAKNAFMLLMRNIVR 1916
IAIYG NFC SA+NAF LLMRNI+R
Sbjct: 564 IAIYGTNFCTSARNAFFLLMRNIIR 588
>ref|XP_547329.2| PREDICTED: similar to CTL2 gene [Canis familiaris].
Length = 709
Score = 381 bits (979), Expect(2) = e-111
Identities = 204/558 (36%), Positives = 297/558 (53%), Gaps = 23/558 (4%)
Frame = +2
Query: 134 NRSCTDIICCVLFFVFILGYIAVGLVAWVYGDPQQVLYPRNSSGAYCGIG--ENKDKPYL 307
+RSCTD++CC++F +FI+ YI +GLVAW++GDP++V YP +S G +CG N++K L
Sbjct: 22 SRSCTDVLCCIIFILFIIAYILLGLVAWIHGDPRRVAYPTDSKGHFCGQKGTSNENKTIL 81
Query: 308 LYFNIFSCVLTTNIIAVAQNGLDCPTPQVCVSSCPAVSWTVATNQLSQTVGQVFYAANRS 487
YFN+FSC + ++ L CPT Q+CVS CP T + + Q +
Sbjct: 82 FYFNLFSCTSPSVVV-----NLQCPTTQICVSKCPEKFLTYMEIEFAHKTSQNYSTYYSQ 136
Query: 488 FCLP--GVPGDMPVHQSLSQELCPSFLLPSSPALGRCFPWPNSTVPEVPEISNTSISQGI 661
FC G P + Q L + CP+ + PS P L RCFP + + + T+ G
Sbjct: 137 FCKTPFGKPAKA-LAQLLLDDDCPTAIFPSKPFLQRCFPDFATNNGTLTVGNKTTFEDGS 195
Query: 662 SGLLDS-------------LNARDISVKIFEDFAQSWYWIXXXXXXXXXXXXXXXXXXXX 802
++ L+AR + +KIFED+A +WYWI
Sbjct: 196 GRTRNAIELRTAANRVNKILDARAVGMKIFEDYATTWYWILIGLTIAMLLSCMFVILLRF 255
Query: 803 XXXXXXXXXXXXXXXXXXXXXYHCWNEYRLLRDKG---ASISQLGFTTNLSAYSSVQETW 973
+HC+ EY L+ + S+ LG T+LS Y +++TW
Sbjct: 256 IAGILFWVFMVGVIGIIGYGIWHCYQEYNNLQGRPNSHLSVYDLGIQTDLSMYFQLKQTW 315
Query: 974 XXXXXXXXXXXXXXXXXXXXXXXXXXXAIALLEEASRAVGQMMSTLFYPLVTFVLLLVCI 1153
+I LL+E S+A+G + +TL YP++TF+ + +CI
Sbjct: 316 LAFMIILCILEVFIILMLIFLRERIRISITLLKEGSKAIGCIPTTLIYPILTFIFISICI 375
Query: 1154 AYWAMTALYLATSGQPQYVLWAPNVSLAGCEKVMMNTSCDPM---NQPVNSTCPGLMCVF 1324
AYWA+ A+YLATSG P Y + AP C+ NT+C+P + CP C F
Sbjct: 376 AYWAVIAIYLATSGVPIYKVIAPE---GKCKHE--NTTCNPEIFNTTEIAKACPEAQCNF 430
Query: 1325 QGYLSTGLVQRSLFNLQIYGVLGLFWTINWVLALGQCVLAGAFASFYWAFHKPRDIPTFP 1504
Y L + + Q++ + FW IN+V+ALGQC LAGAFAS+YWAF KP DIP P
Sbjct: 431 AFYGGKSLYHQYVPTFQMFNLFVFFWLINFVIALGQCALAGAFASYYWAFRKPDDIPPHP 490
Query: 1505 LSSAFIRTLRYHTGSLAFGALILTLVQIARAILEYIDHKLRGVQNPVARCIMCCFKCCLW 1684
L +AF R +RYHTGSLAFG+L+L L+Q+ + +LEY+D +L+ QN +++ + CC KCC W
Sbjct: 491 LFTAFGRAIRYHTGSLAFGSLLLALIQMFKIVLEYLDRRLKDPQNNISKFLQCCLKCCFW 550
Query: 1685 CLEKFIKFLNRNAYIMVS 1738
CLE IK+ NRNAY+M++
Sbjct: 551 CLENVIKYFNRNAYVMIA 568
Score = 42.4 bits (98), Expect(2) = e-111
Identities = 19/25 (76%), Positives = 23/25 (92%)
Frame = +3
Query: 1842 IAIYGKNFCVSAKNAFMLLMRNIVR 1916
IAIYGKNFC SA++AF LLMRNI++
Sbjct: 567 IAIYGKNFCRSARDAFNLLMRNILK 591
>ref|XP_853474.1| PREDICTED: similar to CDW92 antigen isoform 2 isoform 2 [Canis
familiaris].
Length = 719
Score = 117 bits (294), Expect(2) = 1e-29
Identities = 74/223 (33%), Positives = 112/223 (50%)
Frame = +2
Query: 1058 IALLEEASRAVGQMMSTLFYPLVTFVLLLVCIAYWAMTALYLATSGQPQYVLWAPNVSLA 1237
IAL A + + +F P TF L++ AYW MT L+L T+G
Sbjct: 318 IALFHVAGKVFIHLPLLVFQPFWTFFALVLFWAYWIMTLLFLGTTGS------------- 364
Query: 1238 GCEKVMMNTSCDPMNQPVNSTCPGLMCVFQGYLSTGLVQRSLFNLQIYGVLGLFWTINWV 1417
+ N QG++ V L + Y V+GL W ++
Sbjct: 365 ----AVQNE--------------------QGFVEFK-VSGPLQYMWWYHVVGLIWISEFI 399
Query: 1418 LALGQCVLAGAFASFYWAFHKPRDIPTFPLSSAFIRTLRYHTGSLAFGALILTLVQIARA 1597
LA Q +AGA ++Y+ K R++P P+ ++ R +RYH G++A G+ I+TLV+I R
Sbjct: 400 LACQQMTVAGAVVTYYFTRDK-RNLPFTPILASVNRLIRYHLGTVAKGSFIITLVKIPRM 458
Query: 1598 ILEYIDHKLRGVQNPVARCIMCCFKCCLWCLEKFIKFLNRNAY 1726
IL Y+ +L+G +N ARC++ CCLWCLEK + +LN+NAY
Sbjct: 459 ILMYMHSQLKGKENACARCVLKSCICCLWCLEKCLNYLNQNAY 501
Score = 32.3 bits (72), Expect(2) = 1e-29
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +3
Query: 1836 TQIAIYGKNFCVSAKNAFMLLMRNIVR 1916
T AI NFC SAK+AF++L+ N +R
Sbjct: 502 TATAINSTNFCTSAKDAFVILVENALR 528
>ref|XP_867454.1| PREDICTED: similar to CDW92 antigen isoform 2 isoform 4 [Canis
familiaris].
Length = 657
Score = 117 bits (294), Expect(2) = 1e-29
Identities = 74/223 (33%), Positives = 112/223 (50%)
Frame = +2
Query: 1058 IALLEEASRAVGQMMSTLFYPLVTFVLLLVCIAYWAMTALYLATSGQPQYVLWAPNVSLA 1237
IAL A + + +F P TF L++ AYW MT L+L T+G
Sbjct: 318 IALFHVAGKVFIHLPLLVFQPFWTFFALVLFWAYWIMTLLFLGTTGS------------- 364
Query: 1238 GCEKVMMNTSCDPMNQPVNSTCPGLMCVFQGYLSTGLVQRSLFNLQIYGVLGLFWTINWV 1417
+ N QG++ V L + Y V+GL W ++
Sbjct: 365 ----AVQNE--------------------QGFVEFK-VSGPLQYMWWYHVVGLIWISEFI 399
Query: 1418 LALGQCVLAGAFASFYWAFHKPRDIPTFPLSSAFIRTLRYHTGSLAFGALILTLVQIARA 1597
LA Q +AGA ++Y+ K R++P P+ ++ R +RYH G++A G+ I+TLV+I R
Sbjct: 400 LACQQMTVAGAVVTYYFTRDK-RNLPFTPILASVNRLIRYHLGTVAKGSFIITLVKIPRM 458
Query: 1598 ILEYIDHKLRGVQNPVARCIMCCFKCCLWCLEKFIKFLNRNAY 1726
IL Y+ +L+G +N ARC++ CCLWCLEK + +LN+NAY
Sbjct: 459 ILMYMHSQLKGKENACARCVLKSCICCLWCLEKCLNYLNQNAY 501
Score = 32.3 bits (72), Expect(2) = 1e-29
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +3
Query: 1836 TQIAIYGKNFCVSAKNAFMLLMRNIVR 1916
T AI NFC SAK+AF++L+ N +R
Sbjct: 502 TATAINSTNFCTSAKDAFVILVENALR 528
>ref|XP_867445.1| PREDICTED: similar to CDW92 antigen isoform 2 isoform 3 [Canis
familiaris].
Length = 657
Score = 117 bits (294), Expect(2) = 1e-29
Identities = 74/223 (33%), Positives = 112/223 (50%)
Frame = +2
Query: 1058 IALLEEASRAVGQMMSTLFYPLVTFVLLLVCIAYWAMTALYLATSGQPQYVLWAPNVSLA 1237
IAL A + + +F P TF L++ AYW MT L+L T+G
Sbjct: 318 IALFHVAGKVFIHLPLLVFQPFWTFFALVLFWAYWIMTLLFLGTTGS------------- 364
Query: 1238 GCEKVMMNTSCDPMNQPVNSTCPGLMCVFQGYLSTGLVQRSLFNLQIYGVLGLFWTINWV 1417
+ N QG++ V L + Y V+GL W ++
Sbjct: 365 ----AVQNE--------------------QGFVEFK-VSGPLQYMWWYHVVGLIWISEFI 399
Query: 1418 LALGQCVLAGAFASFYWAFHKPRDIPTFPLSSAFIRTLRYHTGSLAFGALILTLVQIARA 1597
LA Q +AGA ++Y+ K R++P P+ ++ R +RYH G++A G+ I+TLV+I R
Sbjct: 400 LACQQMTVAGAVVTYYFTRDK-RNLPFTPILASVNRLIRYHLGTVAKGSFIITLVKIPRM 458
Query: 1598 ILEYIDHKLRGVQNPVARCIMCCFKCCLWCLEKFIKFLNRNAY 1726
IL Y+ +L+G +N ARC++ CCLWCLEK + +LN+NAY
Sbjct: 459 ILMYMHSQLKGKENACARCVLKSCICCLWCLEKCLNYLNQNAY 501
Score = 32.3 bits (72), Expect(2) = 1e-29
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +3
Query: 1836 TQIAIYGKNFCVSAKNAFMLLMRNIVR 1916
T AI NFC SAK+AF++L+ N +R
Sbjct: 502 TATAINSTNFCTSAKDAFVILVENALR 528
>ref|XP_532022.2| PREDICTED: similar to CDW92 antigen isoform 1 isoform 1 [Canis
familiaris].
Length = 654
Score = 117 bits (294), Expect(2) = 1e-29
Identities = 74/223 (33%), Positives = 112/223 (50%)
Frame = +2
Query: 1058 IALLEEASRAVGQMMSTLFYPLVTFVLLLVCIAYWAMTALYLATSGQPQYVLWAPNVSLA 1237
IAL A + + +F P TF L++ AYW MT L+L T+G
Sbjct: 318 IALFHVAGKVFIHLPLLVFQPFWTFFALVLFWAYWIMTLLFLGTTGS------------- 364
Query: 1238 GCEKVMMNTSCDPMNQPVNSTCPGLMCVFQGYLSTGLVQRSLFNLQIYGVLGLFWTINWV 1417
+ N QG++ V L + Y V+GL W ++
Sbjct: 365 ----AVQNE--------------------QGFVEFK-VSGPLQYMWWYHVVGLIWISEFI 399
Query: 1418 LALGQCVLAGAFASFYWAFHKPRDIPTFPLSSAFIRTLRYHTGSLAFGALILTLVQIARA 1597
LA Q +AGA ++Y+ K R++P P+ ++ R +RYH G++A G+ I+TLV+I R
Sbjct: 400 LACQQMTVAGAVVTYYFTRDK-RNLPFTPILASVNRLIRYHLGTVAKGSFIITLVKIPRM 458
Query: 1598 ILEYIDHKLRGVQNPVARCIMCCFKCCLWCLEKFIKFLNRNAY 1726
IL Y+ +L+G +N ARC++ CCLWCLEK + +LN+NAY
Sbjct: 459 ILMYMHSQLKGKENACARCVLKSCICCLWCLEKCLNYLNQNAY 501
Score = 32.3 bits (72), Expect(2) = 1e-29
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +3
Query: 1836 TQIAIYGKNFCVSAKNAFMLLMRNIVR 1916
T AI NFC SAK+AF++L+ N +R
Sbjct: 502 TATAINSTNFCTSAKDAFVILVENALR 528
>ref|XP_547273.2| PREDICTED: similar to CG1311-PA [Canis familiaris].
Length = 698
Score = 81.3 bits (199), Expect = 3e-15
Identities = 57/222 (25%), Positives = 95/222 (42%), Gaps = 1/222 (0%)
Frame = +2
Query: 1064 LLEEASRAVGQMMSTLFYPLVTFVLLLVCIAYWAMTALYLATSGQPQYVLWAPNVSLAGC 1243
L + ++A+ LF PL TF +L+ W L L T+G Q +
Sbjct: 361 LFQVINKAISSSPFLLFQPLWTFAILIFFWVLWVAVLLSLGTAGAAQVI----------- 409
Query: 1244 EKVMMNTSCDPMNQPVNSTCPGLMCVFQGYLSTGLVQRSLFNLQIYGVLGLFWTINWVLA 1423
G +Q + + + Y ++GL WT ++L
Sbjct: 410 --------------------EGGQVEYQPLVG-------IRYMWWYHLIGLIWTSEFILT 442
Query: 1424 LGQCVLAGAFASFYWAFHKPRDIPTFPLSSAFIRTLRYHTGSLAFGALILTLVQIARAIL 1603
Q +AGA + Y+ +K D P P+ + YH G+ G+ ++T+ +I R IL
Sbjct: 443 CQQMTIAGALVTCYFNRNK-NDPPDRPILWSLSILFCYHQGTAIKGSFLMTVTRIPRTIL 501
Query: 1604 EYIDHKLRGVQNPV-ARCIMCCFKCCLWCLEKFIKFLNRNAY 1726
Y+ + L+ Q+ +RC+ C CC WCL+K ++ L +NAY
Sbjct: 502 MYLHNTLKDKQHGAWSRCMFRCCFCCFWCLDKCLRQLTQNAY 543
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 88,256,541
Number of extensions: 2850838
Number of successful extensions: 13503
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 13301
Number of HSP's successfully gapped: 21
Length of query: 660
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 551
Effective length of database: 15,240,880
Effective search space: 8397724880
Effective search space used: 8397724880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-014213
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014213
(1980 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001076911.1| choline transporter-like protein 4 [Bos taur... 885 0.0
Alignment gi|NP_001091608.1| choline transporter-like protein 2 [Bos taur... 429 e-127
Alignment gi|XP_002686326.1| PREDICTED: choline transporter-like protein ... 340 4e-99
Alignment gi|XP_608611.3| PREDICTED: choline transporter-like protein 4-l... 340 5e-99
Alignment gi|XP_583463.4| PREDICTED: CDW92 antigen isoform 2 [Bos taurus]. 113 2e-28
Alignment gi|NP_001092370.1| choline transporter-like protein 3 [Bos taur... 95 8e-22
Alignment gi|XP_002689954.1| PREDICTED: solute carrier family 44, member ... 88 7e-21
>ref|NP_001076911.1| choline transporter-like protein 4 [Bos taurus].
Length = 707
Score = 885 bits (2287), Expect(2) = 0.0
Identities = 434/562 (77%), Positives = 458/562 (81%), Gaps = 1/562 (0%)
Frame = +2
Query: 56 MGEKQDPDK-AYGKPAKYDPSFRGPIRNRSCTDIICCVLFFVFILGYIAVGLVAWVYGDP 232
MG KQD DK AYGKPAKYDPSFRGPIRNRSCTDIICCVLFF+FILGYIAVG++AWVYGDP
Sbjct: 1 MGGKQDQDKEAYGKPAKYDPSFRGPIRNRSCTDIICCVLFFLFILGYIAVGILAWVYGDP 60
Query: 233 QQVLYPRNSSGAYCGIGENKDKPYLLYFNIFSCVLTTNIIAVAQNGLDCPTPQVCVSSCP 412
+QVLYPRNS+GAYCGIGENK+KPYLLYFNIFSCVL TNIIA+AQNGL CPTPQVCVSSCP
Sbjct: 61 KQVLYPRNSTGAYCGIGENKEKPYLLYFNIFSCVLNTNIIAIAQNGLKCPTPQVCVSSCP 120
Query: 413 AVSWTVATNQLSQTVGQVFYAANRSFCLPGVPGDMPVHQSLSQELCPSFLLPSSPALGRC 592
SWTV Q SQTV QVFYAANR+FCLPGVPG+M V QSL QELCPSFLLPS+PALGRC
Sbjct: 121 EASWTVEPRQFSQTVEQVFYAANRNFCLPGVPGNMQVLQSLQQELCPSFLLPSTPALGRC 180
Query: 593 FPWPNSTVPEVPEISNTSISQGISGLLDSLNARDISVKIFEDFAQSWYWIXXXXXXXXXX 772
FPW NSTVPE+P ISNTSISQ ISGLLDSLNARDISVKIFEDFAQSWYWI
Sbjct: 181 FPWTNSTVPELPGISNTSISQSISGLLDSLNARDISVKIFEDFAQSWYWILIALGLALVL 240
Query: 773 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYHCWNEYRLLRDKGASISQLGFTTNLSAY 952
YHCW EYR+LRDKGASISQLGFTTNLSAY
Sbjct: 241 SLLFILLLRLVAGPLVFVLIIGVLGVLAYGIYHCWEEYRVLRDKGASISQLGFTTNLSAY 300
Query: 953 SSVQETWXXXXXXXXXXXXXXXXXXXXXXXXXXXAIALLEEASRAVGQMMSTLFYPLVTF 1132
+VQETW AIALL+EASRAVG +MST+FYPLVTF
Sbjct: 301 RNVQETWLAALIILAVLEGVLLLMLIFLRQRICIAIALLKEASRAVGYIMSTMFYPLVTF 360
Query: 1133 VLLLVCIAYWAMTALYLATSGQPQYVLWAPNVSLAGCEKVMMNTSCDPMNQPVNSTCPGL 1312
LLLVCIAYWA+ AL+LATSGQPQYV WAPN SL GCEKV MNTSCDPM Q VNS+CPGL
Sbjct: 361 ALLLVCIAYWAIIALFLATSGQPQYVFWAPNSSLPGCEKVPMNTSCDPMEQ-VNSSCPGL 419
Query: 1313 MCVFQGYLSTGLVQRSLFNLQIYGVLGLFWTINWVLALGQCVLAGAFASFYWAFHKPRDI 1492
MCVFQGY STGL QRSLFNLQIY VLGLFWTINWVLALGQCVLAGAFASFYWAFHKPRDI
Sbjct: 420 MCVFQGYQSTGLAQRSLFNLQIYAVLGLFWTINWVLALGQCVLAGAFASFYWAFHKPRDI 479
Query: 1493 PTFPLSSAFIRTLRYHTGSLAFGALILTLVQIARAILEYIDHKLRGVQNPVARCIMCCFK 1672
PTFPL SAF+RTLRYHTGSLAFGALILTLVQIAR ILEYIDHKLRG QNP+ RCI+CCFK
Sbjct: 480 PTFPLGSAFLRTLRYHTGSLAFGALILTLVQIARVILEYIDHKLRGAQNPLTRCILCCFK 539
Query: 1673 CCLWCLEKFIKFLNRNAYIMVS 1738
CCLWCLEKFIKFLNRNAYIM++
Sbjct: 540 CCLWCLEKFIKFLNRNAYIMIA 561
Score = 53.1 bits (126), Expect(2) = 0.0
Identities = 25/25 (100%), Positives = 25/25 (100%)
Frame = +3
Query: 1842 IAIYGKNFCVSAKNAFMLLMRNIVR 1916
IAIYGKNFCVSAKNAFMLLMRNIVR
Sbjct: 560 IAIYGKNFCVSAKNAFMLLMRNIVR 584
>ref|NP_001091608.1| choline transporter-like protein 2 [Bos taurus].
Length = 706
Score = 429 bits (1103), Expect(2) = e-127
Identities = 233/572 (40%), Positives = 314/572 (54%), Gaps = 21/572 (3%)
Frame = +2
Query: 86 YGKPAKYDPSFRGPIRNRSCTDIICCVLFFVFILGYIAVGLVAWVYGDPQQVLYPRNSSG 265
+G P KYDP+FRGPI NR CTDIICCV F+ I+GY+AVG++AW +GDP++V+YP +S G
Sbjct: 12 HGTPQKYDPAFRGPIYNRGCTDIICCVFLFLAIVGYVAVGIIAWTHGDPRKVIYPTDSRG 71
Query: 266 AYCGIG--ENKDKPYLLYFNIFSCVLTTNIIAVAQNGLDCPTPQVCVSSCPAVSWTVATN 439
+CG +N++KP+L YFNI C ++ CPTPQ+CV CP+ T
Sbjct: 72 QFCGQKGTKNENKPFLFYFNIVKCASPLVLLE-----FQCPTPQICVEKCPSRYLTYLNA 126
Query: 440 QLSQTVGQVFYAANRSFCLPGVPGDMPVHQSLSQELCPSFLLPSSPALGRCFPWP----- 604
S+ + + +CLPG + V + L CP+ L+PS P RCFP
Sbjct: 127 HASED-----FEYYKQYCLPGFQKNKGVAEVLRDGDCPAVLIPSKPFAQRCFPAVHAHKG 181
Query: 605 -----NSTVPEVPEISNTSISQGISGLLDS---LNARDISVKIFEDFAQSWYWIXXXXXX 760
N T E S +I++ + G + L AR ++++IFED+ SWYWI
Sbjct: 182 ILMVGNETTYEDGLGSRKNITELVEGAKKASGILEARQLAMRIFEDYTVSWYWIIIGLII 241
Query: 761 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYHCWNEYRLLRDKGAS---ISQLGF 931
HC+ EY LR + S + LGF
Sbjct: 242 AMVLSLLFIILLRFLAGIMVWVMIVMVILVLGYGILHCYMEYARLRGEAGSDVSLVDLGF 301
Query: 932 TTNLSAYSSVQETWXXXXXXXXXXXXXXXXXXXXXXXXXXXAIALLEEASRAVGQMMSTL 1111
T+ Y +++TW AIAL++EASRAVG +M +L
Sbjct: 302 QTDFRVYLHLRQTWVAFMIILSIVEVIIILLLIFLRKRILIAIALIKEASRAVGYVMCSL 361
Query: 1112 FYPLVTFVLLLVCIAYWAMTALYLATSGQPQYVLWAPNVSLAGCEKVMMNTSCDPMNQPV 1291
YPLVTF LL +CIAYWA TA++L+TS + Y ++ + C + +C+P P
Sbjct: 362 LYPLVTFFLLCLCIAYWASTAIFLSTSNEAVYKIF----NETSCP--VAGKTCNPETFPS 415
Query: 1292 NST---CPGLMCVFQGYLSTGLVQRSLFNLQIYGVLGLFWTINWVLALGQCVLAGAFASF 1462
++ CPG C F Y R+L LQI+ V FW N+VLALGQ LAGAFAS+
Sbjct: 416 SNESRLCPGAHCQFAFYGGESTYHRALLGLQIFNVFMFFWLANFVLALGQVTLAGAFASY 475
Query: 1463 YWAFHKPRDIPTFPLSSAFIRTLRYHTGSLAFGALILTLVQIARAILEYIDHKLRGVQNP 1642
YWA +KP D+P FPL SAF R LRYHTGSLAFG+L+L +VQ+ R ILEY+D +L+ +N
Sbjct: 476 YWAMNKPDDLPAFPLFSAFGRALRYHTGSLAFGSLLLAIVQVIRVILEYLDQRLKAAENK 535
Query: 1643 VARCIMCCFKCCLWCLEKFIKFLNRNAYIMVS 1738
A+ +M C KCC WCLEKFIKFLNRNAYIM++
Sbjct: 536 FAKFLMSCLKCCFWCLEKFIKFLNRNAYIMIA 567
Score = 45.8 bits (107), Expect(2) = e-127
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = +3
Query: 1842 IAIYGKNFCVSAKNAFMLLMRNIVR 1916
IAIYG NFC SA+NAF LLMRNI+R
Sbjct: 566 IAIYGTNFCTSARNAFFLLMRNIIR 590
>ref|XP_002686326.1| PREDICTED: choline transporter-like protein 4-like [Bos taurus].
Length = 684
Score = 340 bits (873), Expect(2) = 4e-99
Identities = 196/535 (36%), Positives = 275/535 (51%), Gaps = 26/535 (4%)
Frame = +2
Query: 212 AWVYGDPQQVLYPRNSSGAYCGIG--ENKDKPYLLYFNIFSCVLTTNIIAVAQNGLDCPT 385
AWV GDP++V YP +S G +CG N++K L YFN+ +C + ++ L CPT
Sbjct: 25 AWVNGDPRRVAYPTDSQGYFCGQKGTPNENKSILFYFNLLTCTSPSVVV-----NLQCPT 79
Query: 386 PQVCVSSCPAVSWTVATNQLSQTVGQVFYAANRSFCLPGVPGDMPVHQSLSQEL----CP 553
Q+CVS CP T Q ++ FC + ++LSQ L CP
Sbjct: 80 TQICVSKCPERFLTYMEIQFKYKNDSEYWTYYSQFCRTTF---LKPAETLSQVLLDNDCP 136
Query: 554 SFLLPSSPALGRCFPWPNSTVPEVPEISNTSI--------------SQGISGLLDSLNAR 691
S + PS P L RCFP ST + N ++ + +G+ +L+AR
Sbjct: 137 SAIYPSKPFLQRCFP-DFSTKNGTLTVGNKTVFDDGSGKTRNAAELRRAANGINKALDAR 195
Query: 692 DISVKIFEDFAQSWYWIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYH 871
I VK+FED+A +WYWI +
Sbjct: 196 AIGVKVFEDYAMTWYWILIGLTIAMFLSWMFVMLLRFTAGLLFWIFTFGVIGIIAYGIWR 255
Query: 872 CWNEYRLLRDKGAS---ISQLGFTTNLSAYSSVQETWXXXXXXXXXXXXXXXXXXXXXXX 1042
C+ EY L+++ +S +G T++S Y +++TW
Sbjct: 256 CYLEYSRLQEQPSSRLNAYTIGIQTDISMYFRLKQTWFALMIILCLLELFIILMLIFLRN 315
Query: 1043 XXXXAIALLEEASRAVGQMMSTLFYPLVTFVLLLVCIAYWAMTALYLATSGQPQYVLWAP 1222
+IALL+E S+A+G + STL YP +TF L VCI+YWA+ ALYLATSG P Y + AP
Sbjct: 316 RIRISIALLKEGSKAIGYLPSTLIYPALTFFFLSVCISYWAVVALYLATSGAPIYKVIAP 375
Query: 1223 NVSLAGCEKVMMNTSCDPMN---QPVNSTCPGLMCVFQGYLSTGLVQRSLFNLQIYGVLG 1393
CE N +CDP+ V CPG C F Y L + + Q+ +
Sbjct: 376 Q---GHCEHE--NKTCDPVGFNTTEVAKACPGAQCHFAFYGGKSLYHQYITTFQLLNLFV 430
Query: 1394 LFWTINWVLALGQCVLAGAFASFYWAFHKPRDIPTFPLSSAFIRTLRYHTGSLAFGALIL 1573
W IN+V+ALGQC LAGAFAS+YWA KP DIP +PL +AF R +RYHTGSLAFG+LIL
Sbjct: 431 FLWLINFVIALGQCALAGAFASYYWALKKPDDIPPYPLFTAFGRAIRYHTGSLAFGSLIL 490
Query: 1574 TLVQIARAILEYIDHKLRGVQNPVARCIMCCFKCCLWCLEKFIKFLNRNAYIMVS 1738
++Q+ R ILEY+D +L+ Q+ +++ + CC +CC WCLEK +KFLNRNAY+M++
Sbjct: 491 AIIQMFRLILEYLDKRLQEAQSNISKFLKCCLRCCFWCLEKAVKFLNRNAYVMMA 545
Score = 41.6 bits (96), Expect(2) = 4e-99
Identities = 18/25 (72%), Positives = 23/25 (92%)
Frame = +3
Query: 1842 IAIYGKNFCVSAKNAFMLLMRNIVR 1916
+AIYGKNFC SA++AF LLMRNI++
Sbjct: 544 MAIYGKNFCKSARDAFNLLMRNILK 568
>ref|XP_608611.3| PREDICTED: choline transporter-like protein 4-like [Bos taurus].
Length = 684
Score = 340 bits (872), Expect(2) = 5e-99
Identities = 195/535 (36%), Positives = 275/535 (51%), Gaps = 26/535 (4%)
Frame = +2
Query: 212 AWVYGDPQQVLYPRNSSGAYCGIG--ENKDKPYLLYFNIFSCVLTTNIIAVAQNGLDCPT 385
AWV GDP++V YP +S G +CG N++K L YFN+ +C + ++ L CPT
Sbjct: 25 AWVNGDPRRVAYPTDSQGYFCGQKGTPNENKSILFYFNLLTCTSPSVVV-----NLQCPT 79
Query: 386 PQVCVSSCPAVSWTVATNQLSQTVGQVFYAANRSFCLPGVPGDMPVHQSLSQEL----CP 553
Q+CVS CP T Q ++ FC + ++LSQ L CP
Sbjct: 80 TQICVSKCPERFLTYMEIQFKYKNDSEYWTYYSQFCRTTF---LKPAETLSQVLLDNDCP 136
Query: 554 SFLLPSSPALGRCFPWPNSTVPEVPEISNTSI--------------SQGISGLLDSLNAR 691
S + PS P L RCFP ST + N ++ + +G+ +L+AR
Sbjct: 137 SAIYPSKPFLQRCFP-DFSTKNGTLTVGNKTVFDDGSGKTRNAAELRRAANGINKALDAR 195
Query: 692 DISVKIFEDFAQSWYWIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYH 871
I VK+FED+A +WYWI +
Sbjct: 196 AIGVKVFEDYAMTWYWILIGLTIAMFLSWMFVMLLRFTAGLLFWIFTFGVIGIIAYGIWR 255
Query: 872 CWNEYRLLRDKGAS---ISQLGFTTNLSAYSSVQETWXXXXXXXXXXXXXXXXXXXXXXX 1042
C+ EY L+++ +S +G T++S Y +++TW
Sbjct: 256 CYLEYSRLQEQPSSRLNAYTIGIQTDISMYFRLKQTWFALMIILCLLELFIILMLIFLRN 315
Query: 1043 XXXXAIALLEEASRAVGQMMSTLFYPLVTFVLLLVCIAYWAMTALYLATSGQPQYVLWAP 1222
+IALL+E S+A+G + STL YP +TF L VCI+YWA+ ALYLATSG P Y + AP
Sbjct: 316 RIRISIALLKEGSKAIGYLPSTLIYPALTFFFLSVCISYWAVVALYLATSGAPIYKVIAP 375
Query: 1223 NVSLAGCEKVMMNTSCDPMN---QPVNSTCPGLMCVFQGYLSTGLVQRSLFNLQIYGVLG 1393
CE N +CDP+ + CPG C F Y L + + Q+ +
Sbjct: 376 Q---GHCEHE--NKTCDPVGFNTTEIAKACPGAQCHFAFYGGKSLYHQYITTFQLLNLFV 430
Query: 1394 LFWTINWVLALGQCVLAGAFASFYWAFHKPRDIPTFPLSSAFIRTLRYHTGSLAFGALIL 1573
W IN+V+ALGQC LAGAFAS+YWA KP DIP +PL +AF R +RYHTGSLAFG+LIL
Sbjct: 431 FLWLINFVIALGQCALAGAFASYYWALKKPDDIPPYPLFTAFGRAIRYHTGSLAFGSLIL 490
Query: 1574 TLVQIARAILEYIDHKLRGVQNPVARCIMCCFKCCLWCLEKFIKFLNRNAYIMVS 1738
++Q+ R ILEY+D +L+ Q+ +++ + CC +CC WCLEK +KFLNRNAY+M++
Sbjct: 491 AIIQMFRLILEYLDKRLQEAQSNISKFLKCCLRCCFWCLEKAVKFLNRNAYVMMA 545
Score = 41.6 bits (96), Expect(2) = 5e-99
Identities = 18/25 (72%), Positives = 23/25 (92%)
Frame = +3
Query: 1842 IAIYGKNFCVSAKNAFMLLMRNIVR 1916
+AIYGKNFC SA++AF LLMRNI++
Sbjct: 544 MAIYGKNFCKSARDAFNLLMRNILK 568
>ref|XP_583463.4| PREDICTED: CDW92 antigen isoform 2 [Bos taurus].
Length = 699
Score = 113 bits (283), Expect(2) = 2e-28
Identities = 73/223 (32%), Positives = 109/223 (48%)
Frame = +2
Query: 1058 IALLEEASRAVGQMMSTLFYPLVTFVLLLVCIAYWAMTALYLATSGQPQYVLWAPNVSLA 1237
IAL A + + +F P TF L++ YW MT L+L T+G
Sbjct: 360 IALFHVAGKVFIHLPLLVFQPFWTFFALVLFWVYWIMTLLFLGTAGS------------- 406
Query: 1238 GCEKVMMNTSCDPMNQPVNSTCPGLMCVFQGYLSTGLVQRSLFNLQIYGVLGLFWTINWV 1417
+ N QG++ + L + Y V+GL W +
Sbjct: 407 ----AVQNE--------------------QGFVEFKM-SGPLQYMWWYHVVGLIWISECI 441
Query: 1418 LALGQCVLAGAFASFYWAFHKPRDIPTFPLSSAFIRTLRYHTGSLAFGALILTLVQIARA 1597
LA Q +AGA ++Y K R++P P+ ++ R +RYH G++A G+ I+TLV+I R
Sbjct: 442 LACQQMTVAGAVVTYYLNRDK-RNLPFTPILASVNRLIRYHLGTVAKGSFIITLVKIPRM 500
Query: 1598 ILEYIDHKLRGVQNPVARCIMCCFKCCLWCLEKFIKFLNRNAY 1726
IL YI +L+G +N ARC++ CCLWCLEK + +LN+NAY
Sbjct: 501 ILMYIHSQLKGKENACARCVLKSCICCLWCLEKCLNYLNQNAY 543
Score = 32.3 bits (72), Expect(2) = 2e-28
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +3
Query: 1836 TQIAIYGKNFCVSAKNAFMLLMRNIVR 1916
T AI NFC SAK+AF++L+ N +R
Sbjct: 544 TATAINSTNFCTSAKDAFVILVENALR 570
>ref|NP_001092370.1| choline transporter-like protein 3 [Bos taurus].
Length = 649
Score = 95.1 bits (235), Expect(2) = 8e-22
Identities = 61/223 (27%), Positives = 100/223 (44%)
Frame = +2
Query: 1058 IALLEEASRAVGQMMSTLFYPLVTFVLLLVCIAYWAMTALYLATSGQPQYVLWAPNVSLA 1237
+ LL+ ++A+ LF PL TF +L+ W L L T+G Q V
Sbjct: 313 VELLQVTNKAISSSPFLLFQPLWTFAILIFFWVLWVAVLLSLGTAGAAQVV--------- 363
Query: 1238 GCEKVMMNTSCDPMNQPVNSTCPGLMCVFQGYLSTGLVQRSLFNLQIYGVLGLFWTINWV 1417
Q G+ ++ Y ++GL WT ++
Sbjct: 364 ------------EGGQVEYKPLSGIRYMWW-----------------YHLIGLIWTSEFI 394
Query: 1418 LALGQCVLAGAFASFYWAFHKPRDIPTFPLSSAFIRTLRYHTGSLAFGALILTLVQIARA 1597
LA Q +AG + Y+ +K D P P+ S+ YH G++ G+ ++T+V+I RA
Sbjct: 395 LACQQMAVAGTVVTCYFNRNKS-DPPDRPILSSLSILFCYHQGTVVKGSFLITVVRIPRA 453
Query: 1598 ILEYIDHKLRGVQNPVARCIMCCFKCCLWCLEKFIKFLNRNAY 1726
+L Y+ + L+ ++RC+ C CC WCL+K ++ LN+NAY
Sbjct: 454 VLMYVYNTLKEKDGALSRCVSQCCCCCFWCLDKCLRHLNQNAY 496
Score = 28.5 bits (62), Expect(2) = 8e-22
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 1836 TQIAIYGKNFCVSAKNAFMLLMRN 1907
T AI G +FC SAK+A LL +N
Sbjct: 497 TTTAINGTDFCTSAKDALKLLSKN 520
>ref|XP_002689954.1| PREDICTED: solute carrier family 44, member 1 [Bos taurus].
Length = 301
Score = 88.2 bits (217), Expect(2) = 7e-21
Identities = 39/81 (48%), Positives = 58/81 (71%)
Frame = +2
Query: 1484 RDIPTFPLSSAFIRTLRYHTGSLAFGALILTLVQIARAILEYIDHKLRGVQNPVARCIMC 1663
R++P P+ ++ R +RYH G++A G+ I+TLV+I R IL YI +L+G +N ARC++
Sbjct: 65 RNLPFTPILASVNRLIRYHLGTVAKGSFIITLVKIPRMILMYIHSQLKGKENACARCVLK 124
Query: 1664 CFKCCLWCLEKFIKFLNRNAY 1726
CCLWCLEK + +LN+NAY
Sbjct: 125 SCICCLWCLEKCLNYLNQNAY 145
Score = 32.3 bits (72), Expect(2) = 7e-21
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +3
Query: 1836 TQIAIYGKNFCVSAKNAFMLLMRNIVR 1916
T AI NFC SAK+AF++L+ N +R
Sbjct: 146 TATAINSTNFCTSAKDAFVILVENALR 172
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 84,894,105
Number of extensions: 2781692
Number of successful extensions: 12931
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 12811
Number of HSP's successfully gapped: 18
Length of query: 660
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 551
Effective length of database: 14,074,782
Effective search space: 7755204882
Effective search space used: 7755204882
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014213
(1980 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095288.1| choline transporter-like protein 4 [Sus scro... 998 0.0
Alignment gi|XP_003123259.1| PREDICTED: choline transporter-like protein ... 427 e-126
Alignment gi|XP_003123258.1| PREDICTED: choline transporter-like protein ... 425 e-126
Alignment gi|XP_003122110.2| PREDICTED: choline transporter-like protein ... 117 9e-30
Alignment gi|XP_001925175.3| PREDICTED: choline transporter-like protein ... 110 2e-24
>ref|NP_001095288.1| choline transporter-like protein 4 [Sus scrofa].
Length = 707
Score = 998 bits (2580), Expect(2) = 0.0
Identities = 490/561 (87%), Positives = 492/561 (87%)
Frame = +2
Query: 56 MGEKQDPDKAYGKPAKYDPSFRGPIRNRSCTDIICCVLFFVFILGYIAVGLVAWVYGDPQ 235
MGEKQDPDKAYGKPAKYDPSFRGPIRNRSCTDIICCVLFFVFILGYIAVGLVAWVYGDPQ
Sbjct: 1 MGEKQDPDKAYGKPAKYDPSFRGPIRNRSCTDIICCVLFFVFILGYIAVGLVAWVYGDPQ 60
Query: 236 QVLYPRNSSGAYCGIGENKDKPYLLYFNIFSCVLTTNIIAVAQNGLDCPTPQVCVSSCPA 415
QVLYPRNSSGAYCGIGENKDKPYLLYFNIFSCVLTTNIIAVAQNGLDCPTPQVCVSSCPA
Sbjct: 61 QVLYPRNSSGAYCGIGENKDKPYLLYFNIFSCVLTTNIIAVAQNGLDCPTPQVCVSSCPA 120
Query: 416 VSWTVATNQLSQTVGQVFYAANRSFCLPGVPGDMPVHQSLSQELCPSFLLPSSPALGRCF 595
VSWTVATNQLSQTVGQVFYAANRSFCLPGVPGDMPVHQSLSQELCPSFLLPSSPALGRCF
Sbjct: 121 VSWTVATNQLSQTVGQVFYAANRSFCLPGVPGDMPVHQSLSQELCPSFLLPSSPALGRCF 180
Query: 596 PWPNSTVPEVPEISNTSISQGISGLLDSLNARDISVKIFEDFAQSWYWIXXXXXXXXXXX 775
PWPNSTVPEVPEISNTSISQGISGLLDSLNARDISVKIFEDFAQSWYWI
Sbjct: 181 PWPNSTVPEVPEISNTSISQGISGLLDSLNARDISVKIFEDFAQSWYWILAALGVALVLS 240
Query: 776 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYHCWNEYRLLRDKGASISQLGFTTNLSAYS 955
YHCWNEYRLLRDKGASISQLGFTTNLSAYS
Sbjct: 241 LLFVLLLRLVAGPLVFVLIIGVLGVLAYGIYHCWNEYRLLRDKGASISQLGFTTNLSAYS 300
Query: 956 SVQETWXXXXXXXXXXXXXXXXXXXXXXXXXXXAIALLEEASRAVGQMMSTLFYPLVTFV 1135
SVQETW AIALLEEASRAVGQMMSTLFYPLVTFV
Sbjct: 301 SVQETWLAALILLAVLEGILLLMLIFLRQRIRIAIALLEEASRAVGQMMSTLFYPLVTFV 360
Query: 1136 LLLVCIAYWAMTALYLATSGQPQYVLWAPNVSLAGCEKVMMNTSCDPMNQPVNSTCPGLM 1315
LLLVCIAYWAMTALYLATSGQPQYVLWAPNVSLAGCEKVMMNTSCDPMNQPVNSTCPGLM
Sbjct: 361 LLLVCIAYWAMTALYLATSGQPQYVLWAPNVSLAGCEKVMMNTSCDPMNQPVNSTCPGLM 420
Query: 1316 CVFQGYLSTGLVQRSLFNLQIYGVLGLFWTINWVLALGQCVLAGAFASFYWAFHKPRDIP 1495
CVFQGYLSTGLVQRSLFNLQIYGVLGLFWTINWVLALGQCVLAGAFASFYWAFHKPRDIP
Sbjct: 421 CVFQGYLSTGLVQRSLFNLQIYGVLGLFWTINWVLALGQCVLAGAFASFYWAFHKPRDIP 480
Query: 1496 TFPLSSAFIRTLRYHTGSLAFGALILTLVQIARAILEYIDHKLRGVQNPVARCIMCCFKC 1675
TFPLSSAFIRTLRYHTGSLAFGALILTLVQIARAILEYIDHKLRG QNPVARCIMCCFKC
Sbjct: 481 TFPLSSAFIRTLRYHTGSLAFGALILTLVQIARAILEYIDHKLRGAQNPVARCIMCCFKC 540
Query: 1676 CLWCLEKFIKFLNRNAYIMVS 1738
CLWCLEKFIKFLNRNAYIM++
Sbjct: 541 CLWCLEKFIKFLNRNAYIMIA 561
Score = 53.1 bits (126), Expect(2) = 0.0
Identities = 25/25 (100%), Positives = 25/25 (100%)
Frame = +3
Query: 1842 IAIYGKNFCVSAKNAFMLLMRNIVR 1916
IAIYGKNFCVSAKNAFMLLMRNIVR
Sbjct: 560 IAIYGKNFCVSAKNAFMLLMRNIVR 584
>ref|XP_003123259.1| PREDICTED: choline transporter-like protein 2-like isoform 2 [Sus
scrofa].
Length = 704
Score = 427 bits (1098), Expect(2) = e-126
Identities = 234/575 (40%), Positives = 318/575 (55%), Gaps = 21/575 (3%)
Frame = +2
Query: 77 DKAYGKPAKYDPSFRGPIRNRSCTDIICCVLFFVFILGYIAVGLVAWVYGDPQQVLYPRN 256
D AYG P KYDP+F+GPI +R CTD+ICCV + I+GY+AVG++AW +GDP++V+YP +
Sbjct: 7 DGAYGTPQKYDPTFKGPIYHRGCTDVICCVFLLLAIVGYVAVGIIAWTHGDPRKVIYPTD 66
Query: 257 SSGAYCGIG--ENKDKPYLLYFNIFSCVLTTNIIAVAQNGLDCPTPQVCVSSCPAVSWTV 430
S G +CG +N +K YL YFNI C ++ CPTPQ+CV CP T
Sbjct: 67 SRGEFCGQKGTKNANKSYLFYFNIVKCASPLVLLE-----FQCPTPQICVEKCPNRYLTY 121
Query: 431 ATNQLSQTVGQVFYAANRSFCLPGVPGDMPVHQSLSQELCPSFLLPSSPALGRCFPWPNS 610
+Q + + FC+PG + V + L CP+ L+PS P + RCFP ++
Sbjct: 122 LKAHGTQE-----FEYYKQFCVPGFKQNKAVTEVLRDGDCPAVLIPSKPLVQRCFPAIHA 176
Query: 611 TVPEVPEISNTSISQG------ISGLLDS-------LNARDISVKIFEDFAQSWYWIXXX 751
+ + TS G I+ L++ L AR ++++IFED+ SWYWI
Sbjct: 177 HKGVLMVGNETSYEDGHGFRKNITDLVEGAKKANGILEARHLAMRIFEDYTVSWYWIIIG 236
Query: 752 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYHCWNEYRLLR-DKGASIS--Q 922
+HC+ EY LR + G+ IS
Sbjct: 237 LVIAMVLSLLFIILLRFLAGIMVWVMIVMVILVLGYGIFHCYMEYSRLRGEAGSDISLVD 296
Query: 923 LGFTTNLSAYSSVQETWXXXXXXXXXXXXXXXXXXXXXXXXXXXAIALLEEASRAVGQMM 1102
LGF T+L Y +++TW AIAL++EASRAVG +M
Sbjct: 297 LGFQTDLRVYLHLRQTWMAFMIILSILEVIIILLLIFLRKRILIAIALIKEASRAVGYVM 356
Query: 1103 STLFYPLVTFVLLLVCIAYWAMTALYLATSGQPQYVLWAPNVSLAGCEKVMMNTSCDPMN 1282
++ YPLVTF+LL +CIAYWA TA++L+TS + Y +++ C+ V +C+P N
Sbjct: 357 CSMLYPLVTFLLLCLCIAYWASTAIFLSTSNEAVYKIFSDT----DCQAV--GKTCNPEN 410
Query: 1283 QPVNST---CPGLMCVFQGYLSTGLVQRSLFNLQIYGVLGLFWTINWVLALGQCVLAGAF 1453
+S CPG C F Y R+L LQI+ FW N+VLALGQ LAGAF
Sbjct: 411 FSSSSEFHLCPGAHCQFAFYGGESTYHRALLGLQIFNAFMFFWLANFVLALGQVTLAGAF 470
Query: 1454 ASFYWAFHKPRDIPTFPLSSAFIRTLRYHTGSLAFGALILTLVQIARAILEYIDHKLRGV 1633
AS+YWA KP D+P FPL SAF R LRYHTGSLAFG+L+L +VQI R +LEY+D +L+
Sbjct: 471 ASYYWALKKPDDLPAFPLFSAFGRALRYHTGSLAFGSLLLAIVQIIRVMLEYLDQRLKAA 530
Query: 1634 QNPVARCIMCCFKCCLWCLEKFIKFLNRNAYIMVS 1738
+N A+ +M C KCC WCLEKFIKFLNRNAYIM++
Sbjct: 531 ENKFAKFLMTCLKCCFWCLEKFIKFLNRNAYIMIA 565
Score = 45.8 bits (107), Expect(2) = e-126
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = +3
Query: 1842 IAIYGKNFCVSAKNAFMLLMRNIVR 1916
IAIYG NFC SA+NAF LLMRNI+R
Sbjct: 564 IAIYGTNFCTSARNAFFLLMRNIIR 588
>ref|XP_003123258.1| PREDICTED: choline transporter-like protein 2-like isoform 1 [Sus
scrofa].
Length = 706
Score = 425 bits (1093), Expect(2) = e-126
Identities = 234/581 (40%), Positives = 320/581 (55%), Gaps = 21/581 (3%)
Frame = +2
Query: 59 GEKQDPDKAYGKPAKYDPSFRGPIRNRSCTDIICCVLFFVFILGYIAVGLVAWVYGDPQQ 238
GE+Q +G P KYDP+F+GPI +R CTD+ICCV + I+GY+AVG++AW +GDP++
Sbjct: 3 GERQHYYGKHGTPQKYDPTFKGPIYHRGCTDVICCVFLLLAIVGYVAVGIIAWTHGDPRK 62
Query: 239 VLYPRNSSGAYCGIG--ENKDKPYLLYFNIFSCVLTTNIIAVAQNGLDCPTPQVCVSSCP 412
V+YP +S G +CG +N +K YL YFNI C ++ CPTPQ+CV CP
Sbjct: 63 VIYPTDSRGEFCGQKGTKNANKSYLFYFNIVKCASPLVLLE-----FQCPTPQICVEKCP 117
Query: 413 AVSWTVATNQLSQTVGQVFYAANRSFCLPGVPGDMPVHQSLSQELCPSFLLPSSPALGRC 592
T +Q + + FC+PG + V + L CP+ L+PS P + RC
Sbjct: 118 NRYLTYLKAHGTQE-----FEYYKQFCVPGFKQNKAVTEVLRDGDCPAVLIPSKPLVQRC 172
Query: 593 FPWPNSTVPEVPEISNTSISQG------ISGLLDS-------LNARDISVKIFEDFAQSW 733
FP ++ + + TS G I+ L++ L AR ++++IFED+ SW
Sbjct: 173 FPAIHAHKGVLMVGNETSYEDGHGFRKNITDLVEGAKKANGILEARHLAMRIFEDYTVSW 232
Query: 734 YWIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYHCWNEYRLLR-DKGA 910
YWI +HC+ EY LR + G+
Sbjct: 233 YWIIIGLVIAMVLSLLFIILLRFLAGIMVWVMIVMVILVLGYGIFHCYMEYSRLRGEAGS 292
Query: 911 SIS--QLGFTTNLSAYSSVQETWXXXXXXXXXXXXXXXXXXXXXXXXXXXAIALLEEASR 1084
IS LGF T+L Y +++TW AIAL++EASR
Sbjct: 293 DISLVDLGFQTDLRVYLHLRQTWMAFMIILSILEVIIILLLIFLRKRILIAIALIKEASR 352
Query: 1085 AVGQMMSTLFYPLVTFVLLLVCIAYWAMTALYLATSGQPQYVLWAPNVSLAGCEKVMMNT 1264
AVG +M ++ YPLVTF+LL +CIAYWA TA++L+TS + Y +++ C+ V
Sbjct: 353 AVGYVMCSMLYPLVTFLLLCLCIAYWASTAIFLSTSNEAVYKIFSDT----DCQAV--GK 406
Query: 1265 SCDPMNQPVNST---CPGLMCVFQGYLSTGLVQRSLFNLQIYGVLGLFWTINWVLALGQC 1435
+C+P N +S CPG C F Y R+L LQI+ FW N+VLALGQ
Sbjct: 407 TCNPENFSSSSEFHLCPGAHCQFAFYGGESTYHRALLGLQIFNAFMFFWLANFVLALGQV 466
Query: 1436 VLAGAFASFYWAFHKPRDIPTFPLSSAFIRTLRYHTGSLAFGALILTLVQIARAILEYID 1615
LAGAFAS+YWA KP D+P FPL SAF R LRYHTGSLAFG+L+L +VQI R +LEY+D
Sbjct: 467 TLAGAFASYYWALKKPDDLPAFPLFSAFGRALRYHTGSLAFGSLLLAIVQIIRVMLEYLD 526
Query: 1616 HKLRGVQNPVARCIMCCFKCCLWCLEKFIKFLNRNAYIMVS 1738
+L+ +N A+ +M C KCC WCLEKFIKFLNRNAYIM++
Sbjct: 527 QRLKAAENKFAKFLMTCLKCCFWCLEKFIKFLNRNAYIMIA 567
Score = 45.8 bits (107), Expect(2) = e-126
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = +3
Query: 1842 IAIYGKNFCVSAKNAFMLLMRNIVR 1916
IAIYG NFC SA+NAF LLMRNI+R
Sbjct: 566 IAIYGTNFCTSARNAFFLLMRNIIR 590
>ref|XP_003122110.2| PREDICTED: choline transporter-like protein 1, partial [Sus scrofa].
Length = 357
Score = 117 bits (293), Expect(2) = 9e-30
Identities = 74/223 (33%), Positives = 111/223 (49%)
Frame = +2
Query: 1058 IALLEEASRAVGQMMSTLFYPLVTFVLLLVCIAYWAMTALYLATSGQPQYVLWAPNVSLA 1237
IAL A + + +F P TF L++ YW MT L+L T+G
Sbjct: 18 IALFHVAGKVFIHLPLLVFQPFWTFFALVLFWVYWIMTLLFLGTTGS------------- 64
Query: 1238 GCEKVMMNTSCDPMNQPVNSTCPGLMCVFQGYLSTGLVQRSLFNLQIYGVLGLFWTINWV 1417
+ N QG++ V L + Y V+GL W ++
Sbjct: 65 ----AVQND--------------------QGFVEFR-VSGPLQYMWWYHVVGLIWISEFI 99
Query: 1418 LALGQCVLAGAFASFYWAFHKPRDIPTFPLSSAFIRTLRYHTGSLAFGALILTLVQIARA 1597
LA Q +AGA ++Y+ K R++P P+ ++ R +RYH G++A G+ I+TLV+I R
Sbjct: 100 LACQQMTVAGAVVTYYFTRDK-RNLPFAPILASVNRLIRYHLGTVAKGSFIITLVKIPRM 158
Query: 1598 ILEYIDHKLRGVQNPVARCIMCCFKCCLWCLEKFIKFLNRNAY 1726
IL YI +L+G +N ARC++ CCLWCLEK + +LN+NAY
Sbjct: 159 ILMYIHSQLKGKENACARCVLKSCICCLWCLEKCLNYLNQNAY 201
Score = 32.3 bits (72), Expect(2) = 9e-30
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +3
Query: 1836 TQIAIYGKNFCVSAKNAFMLLMRNIVR 1916
T AI NFC SAK+AF++L+ N +R
Sbjct: 202 TATAINSTNFCTSAKDAFVILVENALR 228
>ref|XP_001925175.3| PREDICTED: choline transporter-like protein 1-like, partial [Sus
scrofa].
Length = 290
Score = 110 bits (276), Expect = 2e-24
Identities = 71/220 (32%), Positives = 108/220 (49%)
Frame = +2
Query: 1058 IALLEEASRAVGQMMSTLFYPLVTFVLLLVCIAYWAMTALYLATSGQPQYVLWAPNVSLA 1237
IAL A + + +F P TF L++ YW MT L+L T+G
Sbjct: 110 IALFHVAGKVFIHLPLLVFQPFWTFFALVLFWVYWIMTLLFLGTTGS------------- 156
Query: 1238 GCEKVMMNTSCDPMNQPVNSTCPGLMCVFQGYLSTGLVQRSLFNLQIYGVLGLFWTINWV 1417
+ N QG++ V L + Y V+GL W ++
Sbjct: 157 ----AVQND--------------------QGFVEFR-VSGPLQYMWWYHVVGLIWISEFI 191
Query: 1418 LALGQCVLAGAFASFYWAFHKPRDIPTFPLSSAFIRTLRYHTGSLAFGALILTLVQIARA 1597
LA Q +AGA ++Y+ K R++P P+ ++ R +RYH G++A G+ I+TLV+I R
Sbjct: 192 LACQQMTVAGAVVTYYFTRDK-RNLPFAPILASVNRLIRYHLGTVAKGSFIITLVKIPRM 250
Query: 1598 ILEYIDHKLRGVQNPVARCIMCCFKCCLWCLEKFIKFLNR 1717
IL YI +L+G +N ARC++ CCLWCLEK + +LN+
Sbjct: 251 ILMYIHSQLKGKENACARCVLKSCICCLWCLEKCLNYLNQ 290
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 54,872,186
Number of extensions: 1800460
Number of successful extensions: 8325
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 8255
Number of HSP's successfully gapped: 12
Length of query: 660
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 555
Effective length of database: 8,729,747
Effective search space: 4845009585
Effective search space used: 4845009585
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014213
(1980 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_076046.1| choline transporter-like protein 4 [Mus musculu... 795 0.0
Alignment gi|NP_001186115.1| choline transporter-like protein 2 isoform 1... 429 e-127
Alignment gi|NP_690021.1| choline transporter-like protein 2 isoform 2 [M... 426 e-126
Alignment gi|NP_001074732.1| choline transporter-like protein 5 [Mus musc... 386 e-112
Alignment gi|NP_598652.3| choline transporter-like protein 1 isoform A [M... 117 1e-29
Alignment gi|NP_001153105.1| choline transporter-like protein 1 isoform B... 111 2e-24
Alignment gi|NP_663369.2| choline transporter-like protein 3 [Mus musculu... 68 3e-11
>ref|NP_076046.1| choline transporter-like protein 4 [Mus musculus].
Length = 707
Score = 795 bits (2054), Expect(2) = 0.0
Identities = 384/563 (68%), Positives = 433/563 (76%), Gaps = 2/563 (0%)
Frame = +2
Query: 56 MGEKQDPDKAYGKPAKYDPSFRGPIRNRSCTDIICCVLFFVFILGYIAVGLVAWVYGDPQ 235
MG KQ+ ++A+G AKYDPSFRGPI+NR CTDIICCVLF +FILGYI VGLVAWVYGDP+
Sbjct: 1 MGRKQNENEAHGNSAKYDPSFRGPIKNRGCTDIICCVLFLIFILGYIIVGLVAWVYGDPR 60
Query: 236 QVLYPRNSSGAYCGIGENKDKPYLLYFNIFSCVLTTNIIAVAQNGLDCPTPQVCVSSCPA 415
QVLYPRNS+GAYCG+G+NKDKPY+LYF+I SC NII++A+NGL CPTPQVCVSSCP
Sbjct: 61 QVLYPRNSTGAYCGVGDNKDKPYVLYFDILSCAAAINIISIAENGLQCPTPQVCVSSCPL 120
Query: 416 VSWTVATNQLSQTVGQVFYAANRSFCLPGVPGDMPVHQSLSQELCPSFLLPSSPALGRCF 595
W V Q S+TVG+V Y R+FCLP V DM V +SL + LCP FLLPS+PALGRCF
Sbjct: 121 APWAVEVFQFSKTVGEV-YGERRNFCLPAVSPDMIVEESLQKGLCPRFLLPSTPALGRCF 179
Query: 596 PWPNS--TVPEVPEISNTSISQGISGLLDSLNARDISVKIFEDFAQSWYWIXXXXXXXXX 769
P PN T+PE I+NT++S GISGLLDS+NARD+SVKIFEDFAQSWYWI
Sbjct: 180 PLPNINFTLPEDLRINNTTVSNGISGLLDSINARDVSVKIFEDFAQSWYWILVALGVALA 239
Query: 770 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYHCWNEYRLLRDKGASISQLGFTTNLSA 949
YHCW +Y++ RDKGASI+QLGFTTN SA
Sbjct: 240 LSLLFILLLRLVAAPLVLLLIVGVLAVLAYGIYHCWQQYQVFRDKGASITQLGFTTNFSA 299
Query: 950 YSSVQETWXXXXXXXXXXXXXXXXXXXXXXXXXXXAIALLEEASRAVGQMMSTLFYPLVT 1129
Y SV+ETW AIALL+EASRAVGQMMST+FYPLVT
Sbjct: 300 YQSVKETWLAALIVLAVLEGILLLMLIFLRQRIRIAIALLKEASRAVGQMMSTMFYPLVT 359
Query: 1130 FVLLLVCIAYWAMTALYLATSGQPQYVLWAPNVSLAGCEKVMMNTSCDPMNQPVNSTCPG 1309
FVLL++CI YWA+TALYLATSGQPQY+ WA N S GCE V +N +CDPM P+NS+CP
Sbjct: 360 FVLLVICIGYWAVTALYLATSGQPQYIYWASNTSTPGCENVPVNMTCDPM-APLNSSCPN 418
Query: 1310 LMCVFQGYLSTGLVQRSLFNLQIYGVLGLFWTINWVLALGQCVLAGAFASFYWAFHKPRD 1489
L CVF+GY +TGL QRSLFNLQIYGVLGLFWT+NWVLALGQCVLAGAFASFYWAFHKPRD
Sbjct: 419 LKCVFKGYSTTGLAQRSLFNLQIYGVLGLFWTVNWVLALGQCVLAGAFASFYWAFHKPRD 478
Query: 1490 IPTFPLSSAFIRTLRYHTGSLAFGALILTLVQIARAILEYIDHKLRGVQNPVARCIMCCF 1669
IPTFPLSSAFIRTLRYHTGSLAFGALIL+LVQIAR ILEYIDHKLRG QNPVARCI+CCF
Sbjct: 479 IPTFPLSSAFIRTLRYHTGSLAFGALILSLVQIARVILEYIDHKLRGSQNPVARCIICCF 538
Query: 1670 KCCLWCLEKFIKFLNRNAYIMVS 1738
KCCLWCLEKFIKFLNRNAYIM++
Sbjct: 539 KCCLWCLEKFIKFLNRNAYIMIA 561
Score = 51.6 bits (122), Expect(2) = 0.0
Identities = 23/25 (92%), Positives = 25/25 (100%)
Frame = +3
Query: 1842 IAIYGKNFCVSAKNAFMLLMRNIVR 1916
IAIYGKNFCVSAKNAFMLLMRN++R
Sbjct: 560 IAIYGKNFCVSAKNAFMLLMRNVLR 584
>ref|NP_001186115.1| choline transporter-like protein 2 isoform 1 [Mus musculus].
Length = 704
Score = 429 bits (1104), Expect(2) = e-127
Identities = 235/580 (40%), Positives = 320/580 (55%), Gaps = 21/580 (3%)
Frame = +2
Query: 62 EKQDPDKAYGKPAKYDPSFRGPIRNRSCTDIICCVLFFVFILGYIAVGLVAWVYGDPQQV 241
E D YG P KYDP+F+GPI NR CTD+ICCVL F+ I+GY+AVG++AW +GDP++V
Sbjct: 2 EDDRKDAVYGTPQKYDPTFKGPIYNRGCTDVICCVLLFLAIVGYVAVGIIAWTHGDPRKV 61
Query: 242 LYPRNSSGAYCGIG--ENKDKPYLLYFNIFSCVLTTNIIAVAQNGLDCPTPQVCVSSCPA 415
+YP +S G +CG +N DKP+L YFNI C N + + + CPTPQ+CV CP
Sbjct: 62 IYPTDSRGEFCGQKGTKNADKPFLFYFNIVKCA---NPLVLLE--FHCPTPQICVKQCPD 116
Query: 416 VSWTVATNQLSQTVGQVFYAANRSFCLPGVPGDMPVHQSLSQELCPSFLLPSSPALGRCF 595
T+ + + ++ +Y + FC+PG + V + L CP+ + PS P RCF
Sbjct: 117 RYLTLLSARNTRDFD--YY---KQFCVPGFQNNKGVTEILRDGECPAVITPSKPLAQRCF 171
Query: 596 PWPNSTVPEVPEISNTSISQG------ISGLLDS-------LNARDISVKIFEDFAQSWY 736
P +++ + + T+ G I+ L++ L AR ++++IFED+ SWY
Sbjct: 172 PAIHASKGVLMVGNETTYEDGHGARKNITDLVEGAKKANKILEARQLAMQIFEDYTVSWY 231
Query: 737 WIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYHCWNEYRLLRDKGAS- 913
WI +HC+ EY LR + S
Sbjct: 232 WIIIGLVIAMVLSLLFIVLLRFLAGIMVWVMIVMVILVLGYGIFHCYMEYSRLRGEAGSD 291
Query: 914 --ISQLGFTTNLSAYSSVQETWXXXXXXXXXXXXXXXXXXXXXXXXXXXAIALLEEASRA 1087
+ LGF T+L Y +++TW AIAL++EASRA
Sbjct: 292 VSLVDLGFQTDLRVYLHLRQTWMAFMIILSILEVVIILLLIFLRKRILIAIALIKEASRA 351
Query: 1088 VGQMMSTLFYPLVTFVLLLVCIAYWAMTALYLATSGQPQYVLWAPNVSLAGCEKVMMNTS 1267
VG +M +L YPLVTF LL +CIAYWA T+++L+TS Y + V C ++ +
Sbjct: 352 VGHVMCSLLYPLVTFFLLCLCIAYWASTSVFLSTSNTAVYKV----VDDTACP--LLRKT 405
Query: 1268 CDPMNQPVNST---CPGLMCVFQGYLSTGLVQRSLFNLQIYGVLGLFWTINWVLALGQCV 1438
C+P P+ + CP C F Y R+L LQI+ FW N+VLALGQ
Sbjct: 406 CNPETFPLRNESLQCPTARCQFAFYGGESTYHRALLGLQIFNAFMFFWLANFVLALGQVT 465
Query: 1439 LAGAFASFYWAFHKPRDIPTFPLSSAFIRTLRYHTGSLAFGALILTLVQIARAILEYIDH 1618
LAGAFAS+YWA KP D+P FPL SAF R LRYHTGSLAFG+LIL +VQI R +LEY+D
Sbjct: 466 LAGAFASYYWAMRKPDDMPAFPLFSAFGRALRYHTGSLAFGSLILAIVQIIRVMLEYLDQ 525
Query: 1619 KLRGVQNPVARCIMCCFKCCLWCLEKFIKFLNRNAYIMVS 1738
+L+ QN A+ +M C KCC WCLEKFIKFLNRNAYIM++
Sbjct: 526 RLKAAQNKFAKFLMVCLKCCFWCLEKFIKFLNRNAYIMIA 565
Score = 45.8 bits (107), Expect(2) = e-127
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = +3
Query: 1842 IAIYGKNFCVSAKNAFMLLMRNIVR 1916
IAIYG NFC SA+NAF LLMRNI+R
Sbjct: 564 IAIYGTNFCTSARNAFFLLMRNIIR 588
>ref|NP_690021.1| choline transporter-like protein 2 isoform 2 [Mus musculus].
Length = 706
Score = 426 bits (1094), Expect(2) = e-126
Identities = 235/581 (40%), Positives = 321/581 (55%), Gaps = 24/581 (4%)
Frame = +2
Query: 68 QDPDKAYGK---PAKYDPSFRGPIRNRSCTDIICCVLFFVFILGYIAVGLVAWVYGDPQQ 238
+D YGK P KYDP+F+GPI NR CTD+ICCVL F+ I+GY+AVG++AW +GDP++
Sbjct: 3 KDSQNYYGKHGTPQKYDPTFKGPIYNRGCTDVICCVLLFLAIVGYVAVGIIAWTHGDPRK 62
Query: 239 VLYPRNSSGAYCGIG--ENKDKPYLLYFNIFSCVLTTNIIAVAQNGLDCPTPQVCVSSCP 412
V+YP +S G +CG +N DKP+L YFNI C N + + + CPTPQ+CV CP
Sbjct: 63 VIYPTDSRGEFCGQKGTKNADKPFLFYFNIVKCA---NPLVLLE--FHCPTPQICVKQCP 117
Query: 413 AVSWTVATNQLSQTVGQVFYAANRSFCLPGVPGDMPVHQSLSQELCPSFLLPSSPALGRC 592
T+ + + ++ +Y + FC+PG + V + L CP+ + PS P RC
Sbjct: 118 DRYLTLLSARNTRDFD--YY---KQFCVPGFQNNKGVTEILRDGECPAVITPSKPLAQRC 172
Query: 593 FPWPNSTVPEVPEISNTSISQG------ISGLLDS-------LNARDISVKIFEDFAQSW 733
FP +++ + + T+ G I+ L++ L AR ++++IFED+ SW
Sbjct: 173 FPAIHASKGVLMVGNETTYEDGHGARKNITDLVEGAKKANKILEARQLAMQIFEDYTVSW 232
Query: 734 YWIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYHCWNEYRLLRDKGAS 913
YWI +HC+ EY LR + S
Sbjct: 233 YWIIIGLVIAMVLSLLFIVLLRFLAGIMVWVMIVMVILVLGYGIFHCYMEYSRLRGEAGS 292
Query: 914 ---ISQLGFTTNLSAYSSVQETWXXXXXXXXXXXXXXXXXXXXXXXXXXXAIALLEEASR 1084
+ LGF T+L Y +++TW AIAL++EASR
Sbjct: 293 DVSLVDLGFQTDLRVYLHLRQTWMAFMIILSILEVVIILLLIFLRKRILIAIALIKEASR 352
Query: 1085 AVGQMMSTLFYPLVTFVLLLVCIAYWAMTALYLATSGQPQYVLWAPNVSLAGCEKVMMNT 1264
AVG +M +L YPLVTF LL +CIAYWA T+++L+TS Y + V C ++
Sbjct: 353 AVGHVMCSLLYPLVTFFLLCLCIAYWASTSVFLSTSNTAVYKV----VDDTACP--LLRK 406
Query: 1265 SCDPMNQPVNST---CPGLMCVFQGYLSTGLVQRSLFNLQIYGVLGLFWTINWVLALGQC 1435
+C+P P+ + CP C F Y R+L LQI+ FW N+VLALGQ
Sbjct: 407 TCNPETFPLRNESLQCPTARCQFAFYGGESTYHRALLGLQIFNAFMFFWLANFVLALGQV 466
Query: 1436 VLAGAFASFYWAFHKPRDIPTFPLSSAFIRTLRYHTGSLAFGALILTLVQIARAILEYID 1615
LAGAFAS+YWA KP D+P FPL SAF R LRYHTGSLAFG+LIL +VQI R +LEY+D
Sbjct: 467 TLAGAFASYYWAMRKPDDMPAFPLFSAFGRALRYHTGSLAFGSLILAIVQIIRVMLEYLD 526
Query: 1616 HKLRGVQNPVARCIMCCFKCCLWCLEKFIKFLNRNAYIMVS 1738
+L+ QN A+ +M C KCC WCLEKFIKFLNRNAYIM++
Sbjct: 527 QRLKAAQNKFAKFLMVCLKCCFWCLEKFIKFLNRNAYIMIA 567
Score = 45.8 bits (107), Expect(2) = e-126
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = +3
Query: 1842 IAIYGKNFCVSAKNAFMLLMRNIVR 1916
IAIYG NFC SA+NAF LLMRNI+R
Sbjct: 566 IAIYGTNFCTSARNAFFLLMRNIIR 590
>ref|NP_001074732.1| choline transporter-like protein 5 [Mus musculus].
Length = 710
Score = 386 bits (992), Expect(2) = e-112
Identities = 207/582 (35%), Positives = 302/582 (51%), Gaps = 21/582 (3%)
Frame = +2
Query: 56 MGEKQDPDKAYGKPAKYDPSFRGPIRNRSCTDIICCVLFFVFILGYIAVGLVAWVYGDPQ 235
M K+ P + G P +YDP F+GP R+CTD++CC++F +FILGY+ +GL+AW +GDP+
Sbjct: 1 MARKRKPPSSQGDPRRYDPDFQGPTAKRTCTDVLCCLIFLLFILGYVLLGLLAWAHGDPR 60
Query: 236 QVLYPRNSSGAYCGIG--ENKDKPYLLYFNIFSCVLTTNIIAVAQNGLDCPTPQVCVSSC 409
++ YP +S G +CG N++K L YFNIF C + ++ L C T Q+CVS C
Sbjct: 61 KMAYPTDSQGHFCGQKGTPNENKTVLFYFNIFRCTSPSMMLR-----LQCSTTQICVSRC 115
Query: 410 PAVSWTVATNQLSQTVGQVFYAANRSFCLPGVPGDMPVHQSLSQELCPSFLLPSSPALGR 589
P T Q + ++ R FC + L CP + PS P L R
Sbjct: 116 PERFLTYLDMQFLNKEDKNYWEYYRQFCKAKAKPVETLRDLLISGDCPLAVYPSRPFLQR 175
Query: 590 CFP--------WPNSTVPEVPEISNTS-----ISQGISGLLDSLNARDISVKIFEDFAQS 730
C P W + + + S + + +G+ D +NAR I +K+ ED+A S
Sbjct: 176 CIPDLSALNGTWTPGSRMKFEDGSGQTRTMLEFREAANGISDLINARTIGLKLLEDYATS 235
Query: 731 WYWIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYHCWNEYRLLRDKGA 910
W WI ++C+ EY ++ +
Sbjct: 236 WKWILIGLTVAMALSWTFLILLRFTAGFLFWFFIFGVLGIIGYGIWYCFLEYSSIQQRPQ 295
Query: 911 SISQL---GFTTNLSAYSSVQETWXXXXXXXXXXXXXXXXXXXXXXXXXXXAIALLEEAS 1081
S + G ++ + ++ETW AI LL+E S
Sbjct: 296 STFWMYGFGIQRRVNMFFHLKETWFSMMIILSAIEIIIIIVLIFLRTRIQVAIILLQEGS 355
Query: 1082 RAVGQMMSTLFYPLVTFVLLLVCIAYWAMTALYLATSGQPQYVLWAPNVSLAGCEKVMMN 1261
+A+ + S L YP++TF+LL +CI+YWA+TA++LATSG P + + P AG + + +
Sbjct: 356 KAISYLPSALIYPVLTFILLSICISYWAVTAVFLATSGVPIFKVMVP----AG-QCIYED 410
Query: 1262 TSCDPMNQP---VNSTCPGLMCVFQGYLSTGLVQRSLFNLQIYGVLGLFWTINWVLALGQ 1432
+CDP P + CPG C F Y + + Q+Y + W IN+V+ALGQ
Sbjct: 411 ETCDPEIFPYTNIPKDCPGASCNFAFYGGRSMYHNYILTFQVYNLFAFLWLINFVIALGQ 470
Query: 1433 CVLAGAFASFYWAFHKPRDIPTFPLSSAFIRTLRYHTGSLAFGALILTLVQIARAILEYI 1612
C LAGAFAS+YWA KP DIP +PL +AF R +RYHTGSLAFG+LIL VQ+ + I+EY+
Sbjct: 471 CALAGAFASYYWAMKKPDDIPPYPLFTAFGRAVRYHTGSLAFGSLILASVQMFKVIVEYL 530
Query: 1613 DHKLRGVQNPVARCIMCCFKCCLWCLEKFIKFLNRNAYIMVS 1738
D +L+ QN A+ + CC +CC WCLEK +KFLNRNAYIM++
Sbjct: 531 DRRLKKAQNSAAQFLHCCLQCCFWCLEKMVKFLNRNAYIMIA 572
Score = 40.8 bits (94), Expect(2) = e-112
Identities = 17/25 (68%), Positives = 22/25 (88%)
Frame = +3
Query: 1842 IAIYGKNFCVSAKNAFMLLMRNIVR 1916
IA+YGKNFC S ++AF LLMRNI++
Sbjct: 571 IALYGKNFCESTRDAFYLLMRNILK 595
>ref|NP_598652.3| choline transporter-like protein 1 isoform A [Mus musculus].
Length = 653
Score = 117 bits (294), Expect(2) = 1e-29
Identities = 74/223 (33%), Positives = 112/223 (50%)
Frame = +2
Query: 1058 IALLEEASRAVGQMMSTLFYPLVTFVLLLVCIAYWAMTALYLATSGQPQYVLWAPNVSLA 1237
IAL A + + +F P TF L++ AYW MT L+L T+G
Sbjct: 317 IALFHVAGKVFIHLPLLVFQPFWTFFALVLFWAYWIMTLLFLGTTGS------------- 363
Query: 1238 GCEKVMMNTSCDPMNQPVNSTCPGLMCVFQGYLSTGLVQRSLFNLQIYGVLGLFWTINWV 1417
+ N F Y +G +Q + Y V+GL W ++
Sbjct: 364 ----AVQNEQG-----------------FVEYKISGPLQYMWW----YHVVGLIWISEFI 398
Query: 1418 LALGQCVLAGAFASFYWAFHKPRDIPTFPLSSAFIRTLRYHTGSLAFGALILTLVQIARA 1597
LA Q +AGA ++Y+ K R++P P+ ++ R +RYH G++A G+ I+TLV+I R
Sbjct: 399 LACQQMTVAGAVVTYYFTRDK-RNLPFTPILASVNRLIRYHLGTVAKGSFIITLVKIPRM 457
Query: 1598 ILEYIDHKLRGVQNPVARCIMCCFKCCLWCLEKFIKFLNRNAY 1726
+L YI +L+G +N ARC++ CCLWCLEK + +LN+NAY
Sbjct: 458 VLMYIHSQLKGKENACARCMLKSCICCLWCLEKCLSYLNQNAY 500
Score = 32.3 bits (72), Expect(2) = 1e-29
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +3
Query: 1836 TQIAIYGKNFCVSAKNAFMLLMRNIVR 1916
T AI NFC SAK+AF++L+ N +R
Sbjct: 501 TATAINSTNFCTSAKDAFVILVENALR 527
>ref|NP_001153105.1| choline transporter-like protein 1 isoform B [Mus musculus].
Length = 526
Score = 111 bits (277), Expect = 2e-24
Identities = 71/220 (32%), Positives = 109/220 (49%)
Frame = +2
Query: 1058 IALLEEASRAVGQMMSTLFYPLVTFVLLLVCIAYWAMTALYLATSGQPQYVLWAPNVSLA 1237
IAL A + + +F P TF L++ AYW MT L+L T+G
Sbjct: 317 IALFHVAGKVFIHLPLLVFQPFWTFFALVLFWAYWIMTLLFLGTTGS------------- 363
Query: 1238 GCEKVMMNTSCDPMNQPVNSTCPGLMCVFQGYLSTGLVQRSLFNLQIYGVLGLFWTINWV 1417
+ N F Y +G +Q + Y V+GL W ++
Sbjct: 364 ----AVQNEQG-----------------FVEYKISGPLQYMWW----YHVVGLIWISEFI 398
Query: 1418 LALGQCVLAGAFASFYWAFHKPRDIPTFPLSSAFIRTLRYHTGSLAFGALILTLVQIARA 1597
LA Q +AGA ++Y+ K R++P P+ ++ R +RYH G++A G+ I+TLV+I R
Sbjct: 399 LACQQMTVAGAVVTYYFTRDK-RNLPFTPILASVNRLIRYHLGTVAKGSFIITLVKIPRM 457
Query: 1598 ILEYIDHKLRGVQNPVARCIMCCFKCCLWCLEKFIKFLNR 1717
+L YI +L+G +N ARC++ CCLWCLEK + +LN+
Sbjct: 458 VLMYIHSQLKGKENACARCMLKSCICCLWCLEKCLSYLNQ 497
>ref|NP_663369.2| choline transporter-like protein 3 [Mus musculus].
Length = 656
Score = 67.8 bits (164), Expect = 3e-11
Identities = 56/224 (25%), Positives = 89/224 (39%), Gaps = 1/224 (0%)
Frame = +2
Query: 1058 IALLEEASRAVGQMMSTLFYPLVTFVLLLVCIAYWAMTALYLATSGQPQYVLWAPNVSLA 1237
+ LL ++A+ LF PL T +L+ W L L T+G Q
Sbjct: 316 VELLHVTNKAISSCPFLLFQPLWTCAILIFFWVLWVAVLLSLGTAGTAQ----------- 364
Query: 1238 GCEKVMMNTSCDPMNQPVNSTCPGLMCVFQGYLSTGLVQRSLFNLQIYGVLGLFWTINWV 1417
V +G + + Y ++GL WT ++
Sbjct: 365 ---------------------------VMEGGQVEYKPLSGIRYMWWYHLIGLIWTSEFI 397
Query: 1418 LALGQCVLAGAFASFYWAFHKPRDIPTFPLSSAFIRTLRYHTGSLAFGALILTLVQIARA 1597
LA + +AGA + Y+ ++ D P P+ S+ YH G+ G+ +LT+ +I R
Sbjct: 398 LACQRMTVAGAMVACYFNRNQ-NDPPARPILSSLFVLFCYHQGTAVKGSFLLTVTRIPRV 456
Query: 1598 ILEYIDHKLRGVQNPV-ARCIMCCFKCCLWCLEKFIKFLNRNAY 1726
I I L+ Q +R C C LWCL K++ LN++AY
Sbjct: 457 IFMCIYSTLKEPQRSAWSRGEFRCSHCGLWCLLKYLYHLNQDAY 500
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 72,964,288
Number of extensions: 2303141
Number of successful extensions: 9524
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 9426
Number of HSP's successfully gapped: 16
Length of query: 660
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 552
Effective length of database: 12,373,671
Effective search space: 6830266392
Effective search space used: 6830266392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014213
(1980 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079533.2| choline transporter-like protein 4 isoform 1 [H... 854 0.0
Alignment gi|NP_001171515.1| choline transporter-like protein 4 isoform 2... 772 0.0
Alignment gi|NP_001171516.1| choline transporter-like protein 4 isoform 3... 723 0.0
Alignment gi|NP_001138528.1| choline transporter-like protein 2 isoform 2... 432 e-128
Alignment gi|NP_065161.3| choline transporter-like protein 2 isoform 1 [H... 428 e-126
Alignment gi|NP_689910.2| choline transporter-like protein 5 isoform A [H... 418 e-122
Alignment gi|NP_001123530.1| choline transporter-like protein 5 isoform B... 418 e-122
Alignment gi|NP_536856.2| choline transporter-like protein 1 [Homo sapien... 119 3e-30
Alignment gi|NP_001107578.1| choline transporter-like protein 3 isoform 1... 86 2e-19
Alignment gi|NP_689582.2| choline transporter-like protein 3 isoform 2 [H... 86 2e-19
>ref|NP_079533.2| choline transporter-like protein 4 isoform 1 [Homo sapiens].
Length = 710
Score = 854 bits (2207), Expect(2) = 0.0
Identities = 414/564 (73%), Positives = 454/564 (80%), Gaps = 3/564 (0%)
Frame = +2
Query: 56 MGEKQ--DPDKAYGKPAKYDPSFRGPIRNRSCTDIICCVLFFVFILGYIAVGLVAWVYGD 229
MG KQ + D+AYGKP KYDPSFRGPI+NRSCTD+ICCVLF +FILGYI VG+VAW+YGD
Sbjct: 1 MGGKQRDEDDEAYGKPVKYDPSFRGPIKNRSCTDVICCVLFLLFILGYIVVGIVAWLYGD 60
Query: 230 PQQVLYPRNSSGAYCGIGENKDKPYLLYFNIFSCVLTTNIIAVAQNGLDCPTPQVCVSSC 409
P+QVLYPRNS+GAYCG+GENKDKPYLLYFNIFSC+L++NII+VA+NGL CPTPQVCVSSC
Sbjct: 61 PRQVLYPRNSTGAYCGMGENKDKPYLLYFNIFSCILSSNIISVAENGLQCPTPQVCVSSC 120
Query: 410 PAVSWTVATNQLSQTVGQVFYAANRSFCLPGVPGDMPVHQSLSQELCPSFLLPSSPALGR 589
P WTV N+ SQTVG+VFY NR+FCLPGVP +M V SL QELCPSFLLPS+PALGR
Sbjct: 121 PEDPWTVGKNEFSQTVGEVFYTKNRNFCLPGVPWNMTVITSLQQELCPSFLLPSAPALGR 180
Query: 590 CFPWPNSTVPEVPEISN-TSISQGISGLLDSLNARDISVKIFEDFAQSWYWIXXXXXXXX 766
CFPW N T P +P I+N T+I QGISGL+DSLNARDISVKIFEDFAQSWYWI
Sbjct: 181 CFPWTNVTPPALPGITNDTTIQQGISGLIDSLNARDISVKIFEDFAQSWYWILVALGVAL 240
Query: 767 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYHCWNEYRLLRDKGASISQLGFTTNLS 946
Y+CW EYR+LRDKGASISQLGFTTNLS
Sbjct: 241 VLSLLFILLLRLVAGPLVLVLILGVLGVLAYGIYYCWEEYRVLRDKGASISQLGFTTNLS 300
Query: 947 AYSSVQETWXXXXXXXXXXXXXXXXXXXXXXXXXXXAIALLEEASRAVGQMMSTLFYPLV 1126
AY SVQETW AIALL+EAS+AVGQMMST+FYPLV
Sbjct: 301 AYQSVQETWLAALIVLAVLEAILLLMLIFLRQRIRIAIALLKEASKAVGQMMSTMFYPLV 360
Query: 1127 TFVLLLVCIAYWAMTALYLATSGQPQYVLWAPNVSLAGCEKVMMNTSCDPMNQPVNSTCP 1306
TFVLLL+CIAYWAMTALYLATSGQPQYVLWA N+S GCEKV +NTSC+P VNS+CP
Sbjct: 361 TFVLLLICIAYWAMTALYLATSGQPQYVLWASNISSPGCEKVPINTSCNPTAHLVNSSCP 420
Query: 1307 GLMCVFQGYLSTGLVQRSLFNLQIYGVLGLFWTINWVLALGQCVLAGAFASFYWAFHKPR 1486
GLMCVFQGY S GL+QRS+FNLQIYGVLGLFWT+NWVLALGQCVLAGAFASFYWAFHKP+
Sbjct: 421 GLMCVFQGYSSKGLIQRSVFNLQIYGVLGLFWTLNWVLALGQCVLAGAFASFYWAFHKPQ 480
Query: 1487 DIPTFPLSSAFIRTLRYHTGSLAFGALILTLVQIARAILEYIDHKLRGVQNPVARCIMCC 1666
DIPTFPL SAFIRTLRYHTGSLAFGALILTLVQIAR ILEYIDHKLRGVQNPVARCIMCC
Sbjct: 481 DIPTFPLISAFIRTLRYHTGSLAFGALILTLVQIARVILEYIDHKLRGVQNPVARCIMCC 540
Query: 1667 FKCCLWCLEKFIKFLNRNAYIMVS 1738
FKCCLWCLEKFIKFLNRNAYIM++
Sbjct: 541 FKCCLWCLEKFIKFLNRNAYIMIA 564
Score = 53.1 bits (126), Expect(2) = 0.0
Identities = 25/25 (100%), Positives = 25/25 (100%)
Frame = +3
Query: 1842 IAIYGKNFCVSAKNAFMLLMRNIVR 1916
IAIYGKNFCVSAKNAFMLLMRNIVR
Sbjct: 563 IAIYGKNFCVSAKNAFMLLMRNIVR 587
>ref|NP_001171515.1| choline transporter-like protein 4 isoform 2 [Homo sapiens].
Length = 668
Score = 772 bits (1994), Expect(2) = 0.0
Identities = 384/564 (68%), Positives = 422/564 (74%), Gaps = 3/564 (0%)
Frame = +2
Query: 56 MGEKQ--DPDKAYGKPAKYDPSFRGPIRNRSCTDIICCVLFFVFILGYIAVGLVAWVYGD 229
MG KQ + D+AYGKP KYDPSFRGPI+NRSCTD+ICCVLF +FILGYI VG+VAW+YGD
Sbjct: 1 MGGKQRDEDDEAYGKPVKYDPSFRGPIKNRSCTDVICCVLFLLFILGYIVVGIVAWLYGD 60
Query: 230 PQQVLYPRNSSGAYCGIGENKDKPYLLYFNIFSCVLTTNIIAVAQNGLDCPTPQVCVSSC 409
P+QVLYPRNS+GAYCG+GENKDKPYLLYFNIFSC+L++NII+VA+NGL CPTPQ ++S
Sbjct: 61 PRQVLYPRNSTGAYCGMGENKDKPYLLYFNIFSCILSSNIISVAENGLQCPTPQTVITS- 119
Query: 410 PAVSWTVATNQLSQTVGQVFYAANRSFCLPGVPGDMPVHQSLSQELCPSFLLPSSPALGR 589
L QELCPSFLLPS+PALGR
Sbjct: 120 -----------------------------------------LQQELCPSFLLPSAPALGR 138
Query: 590 CFPWPNSTVPEVPEISN-TSISQGISGLLDSLNARDISVKIFEDFAQSWYWIXXXXXXXX 766
CFPW N T P +P I+N T+I QGISGL+DSLNARDISVKIFEDFAQSWYWI
Sbjct: 139 CFPWTNVTPPALPGITNDTTIQQGISGLIDSLNARDISVKIFEDFAQSWYWILVALGVAL 198
Query: 767 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYHCWNEYRLLRDKGASISQLGFTTNLS 946
Y+CW EYR+LRDKGASISQLGFTTNLS
Sbjct: 199 VLSLLFILLLRLVAGPLVLVLILGVLGVLAYGIYYCWEEYRVLRDKGASISQLGFTTNLS 258
Query: 947 AYSSVQETWXXXXXXXXXXXXXXXXXXXXXXXXXXXAIALLEEASRAVGQMMSTLFYPLV 1126
AY SVQETW AIALL+EAS+AVGQMMST+FYPLV
Sbjct: 259 AYQSVQETWLAALIVLAVLEAILLLMLIFLRQRIRIAIALLKEASKAVGQMMSTMFYPLV 318
Query: 1127 TFVLLLVCIAYWAMTALYLATSGQPQYVLWAPNVSLAGCEKVMMNTSCDPMNQPVNSTCP 1306
TFVLLL+CIAYWAMTALYLATSGQPQYVLWA N+S GCEKV +NTSC+P VNS+CP
Sbjct: 319 TFVLLLICIAYWAMTALYLATSGQPQYVLWASNISSPGCEKVPINTSCNPTAHLVNSSCP 378
Query: 1307 GLMCVFQGYLSTGLVQRSLFNLQIYGVLGLFWTINWVLALGQCVLAGAFASFYWAFHKPR 1486
GLMCVFQGY S GL+QRS+FNLQIYGVLGLFWT+NWVLALGQCVLAGAFASFYWAFHKP+
Sbjct: 379 GLMCVFQGYSSKGLIQRSVFNLQIYGVLGLFWTLNWVLALGQCVLAGAFASFYWAFHKPQ 438
Query: 1487 DIPTFPLSSAFIRTLRYHTGSLAFGALILTLVQIARAILEYIDHKLRGVQNPVARCIMCC 1666
DIPTFPL SAFIRTLRYHTGSLAFGALILTLVQIAR ILEYIDHKLRGVQNPVARCIMCC
Sbjct: 439 DIPTFPLISAFIRTLRYHTGSLAFGALILTLVQIARVILEYIDHKLRGVQNPVARCIMCC 498
Query: 1667 FKCCLWCLEKFIKFLNRNAYIMVS 1738
FKCCLWCLEKFIKFLNRNAYIM++
Sbjct: 499 FKCCLWCLEKFIKFLNRNAYIMIA 522
Score = 53.1 bits (126), Expect(2) = 0.0
Identities = 25/25 (100%), Positives = 25/25 (100%)
Frame = +3
Query: 1842 IAIYGKNFCVSAKNAFMLLMRNIVR 1916
IAIYGKNFCVSAKNAFMLLMRNIVR
Sbjct: 521 IAIYGKNFCVSAKNAFMLLMRNIVR 545
>ref|NP_001171516.1| choline transporter-like protein 4 isoform 3 [Homo sapiens].
Length = 634
Score = 723 bits (1865), Expect(2) = 0.0
Identities = 354/488 (72%), Positives = 385/488 (78%), Gaps = 1/488 (0%)
Frame = +2
Query: 278 IGENKDKPYLLYFNIFSCVLTTNIIAVAQNGLDCPTPQVCVSSCPAVSWTVATNQLSQTV 457
+GENKDKPYLLYFNIFSC+L++NII+VA+NGL CPTPQVCVSSCP WTV N+ SQTV
Sbjct: 1 MGENKDKPYLLYFNIFSCILSSNIISVAENGLQCPTPQVCVSSCPEDPWTVGKNEFSQTV 60
Query: 458 GQVFYAANRSFCLPGVPGDMPVHQSLSQELCPSFLLPSSPALGRCFPWPNSTVPEVPEIS 637
G+VFY NR+FCLPGVP +M V SL QELCPSFLLPS+PALGRCFPW N T P +P I+
Sbjct: 61 GEVFYTKNRNFCLPGVPWNMTVITSLQQELCPSFLLPSAPALGRCFPWTNVTPPALPGIT 120
Query: 638 N-TSISQGISGLLDSLNARDISVKIFEDFAQSWYWIXXXXXXXXXXXXXXXXXXXXXXXX 814
N T+I QGISGL+DSLNARDISVKIFEDFAQSWYWI
Sbjct: 121 NDTTIQQGISGLIDSLNARDISVKIFEDFAQSWYWILVALGVALVLSLLFILLLRLVAGP 180
Query: 815 XXXXXXXXXXXXXXXXXYHCWNEYRLLRDKGASISQLGFTTNLSAYSSVQETWXXXXXXX 994
Y+CW EYR+LRDKGASISQLGFTTNLSAY SVQETW
Sbjct: 181 LVLVLILGVLGVLAYGIYYCWEEYRVLRDKGASISQLGFTTNLSAYQSVQETWLAALIVL 240
Query: 995 XXXXXXXXXXXXXXXXXXXXAIALLEEASRAVGQMMSTLFYPLVTFVLLLVCIAYWAMTA 1174
AIALL+EAS+AVGQMMST+FYPLVTFVLLL+CIAYWAMTA
Sbjct: 241 AVLEAILLLMLIFLRQRIRIAIALLKEASKAVGQMMSTMFYPLVTFVLLLICIAYWAMTA 300
Query: 1175 LYLATSGQPQYVLWAPNVSLAGCEKVMMNTSCDPMNQPVNSTCPGLMCVFQGYLSTGLVQ 1354
LYLATSGQPQYVLWA N+S GCEKV +NTSC+P VNS+CPGLMCVFQGY S GL+Q
Sbjct: 301 LYLATSGQPQYVLWASNISSPGCEKVPINTSCNPTAHLVNSSCPGLMCVFQGYSSKGLIQ 360
Query: 1355 RSLFNLQIYGVLGLFWTINWVLALGQCVLAGAFASFYWAFHKPRDIPTFPLSSAFIRTLR 1534
RS+FNLQIYGVLGLFWT+NWVLALGQCVLAGAFASFYWAFHKP+DIPTFPL SAFIRTLR
Sbjct: 361 RSVFNLQIYGVLGLFWTLNWVLALGQCVLAGAFASFYWAFHKPQDIPTFPLISAFIRTLR 420
Query: 1535 YHTGSLAFGALILTLVQIARAILEYIDHKLRGVQNPVARCIMCCFKCCLWCLEKFIKFLN 1714
YHTGSLAFGALILTLVQIAR ILEYIDHKLRGVQNPVARCIMCCFKCCLWCLEKFIKFLN
Sbjct: 421 YHTGSLAFGALILTLVQIARVILEYIDHKLRGVQNPVARCIMCCFKCCLWCLEKFIKFLN 480
Query: 1715 RNAYIMVS 1738
RNAYIM++
Sbjct: 481 RNAYIMIA 488
Score = 53.1 bits (126), Expect(2) = 0.0
Identities = 25/25 (100%), Positives = 25/25 (100%)
Frame = +3
Query: 1842 IAIYGKNFCVSAKNAFMLLMRNIVR 1916
IAIYGKNFCVSAKNAFMLLMRNIVR
Sbjct: 487 IAIYGKNFCVSAKNAFMLLMRNIVR 511
>ref|NP_001138528.1| choline transporter-like protein 2 isoform 2 [Homo sapiens].
Length = 704
Score = 432 bits (1112), Expect(2) = e-128
Identities = 236/580 (40%), Positives = 314/580 (54%), Gaps = 21/580 (3%)
Frame = +2
Query: 62 EKQDPDKAYGKPAKYDPSFRGPIRNRSCTDIICCVLFFVFILGYIAVGLVAWVYGDPQQV 241
E + + AYG P KYDP+F+GPI NR CTDIICCV + I+GY+AVG++AW +GDP++V
Sbjct: 2 EDERKNGAYGTPQKYDPTFKGPIYNRGCTDIICCVFLLLAIVGYVAVGIIAWTHGDPRKV 61
Query: 242 LYPRNSSGAYCGIG--ENKDKPYLLYFNIFSCVLTTNIIAVAQNGLDCPTPQVCVSSCPA 415
+YP +S G +CG +N++KPYL YFNI C ++ CPTPQ+CV CP
Sbjct: 62 IYPTDSRGEFCGQKGTKNENKPYLFYFNIVKCASPLVLLE-----FQCPTPQICVEKCPD 116
Query: 416 VSWTVATNQLSQTVGQVFYAANRSFCLPGVPGDMPVHQSLSQELCPSFLLPSSPALGRCF 595
T + S+ + + FC+PG + V + L CP+ L+PS P RCF
Sbjct: 117 RYLTYLNARSSRD-----FEYYKQFCVPGFKNNKGVAEVLQDGDCPAVLIPSKPLARRCF 171
Query: 596 PW----------PNSTVPEVPEISNTSISQGISGLLDS---LNARDISVKIFEDFAQSWY 736
P N T E S +I+ + G + L AR ++++IFED+ SWY
Sbjct: 172 PAIHAYKGVLMVGNETTYEDGHGSRKNITDLVEGAKKANGVLEARQLAMRIFEDYTVSWY 231
Query: 737 WIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYHCWNEYRLLRDKGAS- 913
WI +HC+ EY LR + S
Sbjct: 232 WIIIGLVIAMAMSLLFIILLRFLAGIMVWVMIIMVILVLGYGIFHCYMEYSRLRGEAGSD 291
Query: 914 --ISQLGFTTNLSAYSSVQETWXXXXXXXXXXXXXXXXXXXXXXXXXXXAIALLEEASRA 1087
+ LGF T+ Y +++TW AIAL++EASRA
Sbjct: 292 VSLVDLGFQTDFRVYLHLRQTWLAFMIILSILEVIIILLLIFLRKRILIAIALIKEASRA 351
Query: 1088 VGQMMSTLFYPLVTFVLLLVCIAYWAMTALYLATSGQPQYVLWAPNVSLAGCEKVMMNTS 1267
VG +M +L YPLVTF LL +CIAYWA TA++L+TS + Y ++ + + +
Sbjct: 352 VGYVMCSLLYPLVTFFLLCLCIAYWASTAVFLSTSNEAVYKIFDDSPCPFTAK------T 405
Query: 1268 CDPMNQPVNST---CPGLMCVFQGYLSTGLVQRSLFNLQIYGVLGLFWTINWVLALGQCV 1438
C+P P ++ CP C F Y R+L LQI+ FW N+VLALGQ
Sbjct: 406 CNPETFPSSNESRQCPNARCQFAFYGGESGYHRALLGLQIFNAFMFFWLANFVLALGQVT 465
Query: 1439 LAGAFASFYWAFHKPRDIPTFPLSSAFIRTLRYHTGSLAFGALILTLVQIARAILEYIDH 1618
LAGAFAS+YWA KP D+P FPL SAF R LRYHTGSLAFGALIL +VQI R ILEY+D
Sbjct: 466 LAGAFASYYWALRKPDDLPAFPLFSAFGRALRYHTGSLAFGALILAIVQIIRVILEYLDQ 525
Query: 1619 KLRGVQNPVARCIMCCFKCCLWCLEKFIKFLNRNAYIMVS 1738
+L+ +N A+C+M C KCC WCLEKFIKFLNRNAYIM++
Sbjct: 526 RLKAAENKFAKCLMTCLKCCFWCLEKFIKFLNRNAYIMIA 565
Score = 45.8 bits (107), Expect(2) = e-128
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = +3
Query: 1842 IAIYGKNFCVSAKNAFMLLMRNIVR 1916
IAIYG NFC SA+NAF LLMRNI+R
Sbjct: 564 IAIYGTNFCTSARNAFFLLMRNIIR 588
>ref|NP_065161.3| choline transporter-like protein 2 isoform 1 [Homo sapiens].
Length = 706
Score = 428 bits (1101), Expect(2) = e-126
Identities = 233/572 (40%), Positives = 310/572 (54%), Gaps = 21/572 (3%)
Frame = +2
Query: 86 YGKPAKYDPSFRGPIRNRSCTDIICCVLFFVFILGYIAVGLVAWVYGDPQQVLYPRNSSG 265
+G P KYDP+F+GPI NR CTDIICCV + I+GY+AVG++AW +GDP++V+YP +S G
Sbjct: 12 HGTPQKYDPTFKGPIYNRGCTDIICCVFLLLAIVGYVAVGIIAWTHGDPRKVIYPTDSRG 71
Query: 266 AYCGIG--ENKDKPYLLYFNIFSCVLTTNIIAVAQNGLDCPTPQVCVSSCPAVSWTVATN 439
+CG +N++KPYL YFNI C ++ CPTPQ+CV CP T
Sbjct: 72 EFCGQKGTKNENKPYLFYFNIVKCASPLVLLE-----FQCPTPQICVEKCPDRYLTYLNA 126
Query: 440 QLSQTVGQVFYAANRSFCLPGVPGDMPVHQSLSQELCPSFLLPSSPALGRCFPW------ 601
+ S+ + + FC+PG + V + L CP+ L+PS P RCFP
Sbjct: 127 RSSRD-----FEYYKQFCVPGFKNNKGVAEVLQDGDCPAVLIPSKPLARRCFPAIHAYKG 181
Query: 602 ----PNSTVPEVPEISNTSISQGISGLLDS---LNARDISVKIFEDFAQSWYWIXXXXXX 760
N T E S +I+ + G + L AR ++++IFED+ SWYWI
Sbjct: 182 VLMVGNETTYEDGHGSRKNITDLVEGAKKANGVLEARQLAMRIFEDYTVSWYWIIIGLVI 241
Query: 761 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYHCWNEYRLLRDKGAS---ISQLGF 931
+HC+ EY LR + S + LGF
Sbjct: 242 AMAMSLLFIILLRFLAGIMVWVMIIMVILVLGYGIFHCYMEYSRLRGEAGSDVSLVDLGF 301
Query: 932 TTNLSAYSSVQETWXXXXXXXXXXXXXXXXXXXXXXXXXXXAIALLEEASRAVGQMMSTL 1111
T+ Y +++TW AIAL++EASRAVG +M +L
Sbjct: 302 QTDFRVYLHLRQTWLAFMIILSILEVIIILLLIFLRKRILIAIALIKEASRAVGYVMCSL 361
Query: 1112 FYPLVTFVLLLVCIAYWAMTALYLATSGQPQYVLWAPNVSLAGCEKVMMNTSCDPMNQPV 1291
YPLVTF LL +CIAYWA TA++L+TS + Y ++ + + +C+P P
Sbjct: 362 LYPLVTFFLLCLCIAYWASTAVFLSTSNEAVYKIFDDSPCPFTAK------TCNPETFPS 415
Query: 1292 NST---CPGLMCVFQGYLSTGLVQRSLFNLQIYGVLGLFWTINWVLALGQCVLAGAFASF 1462
++ CP C F Y R+L LQI+ FW N+VLALGQ LAGAFAS+
Sbjct: 416 SNESRQCPNARCQFAFYGGESGYHRALLGLQIFNAFMFFWLANFVLALGQVTLAGAFASY 475
Query: 1463 YWAFHKPRDIPTFPLSSAFIRTLRYHTGSLAFGALILTLVQIARAILEYIDHKLRGVQNP 1642
YWA KP D+P FPL SAF R LRYHTGSLAFGALIL +VQI R ILEY+D +L+ +N
Sbjct: 476 YWALRKPDDLPAFPLFSAFGRALRYHTGSLAFGALILAIVQIIRVILEYLDQRLKAAENK 535
Query: 1643 VARCIMCCFKCCLWCLEKFIKFLNRNAYIMVS 1738
A+C+M C KCC WCLEKFIKFLNRNAYIM++
Sbjct: 536 FAKCLMTCLKCCFWCLEKFIKFLNRNAYIMIA 567
Score = 45.8 bits (107), Expect(2) = e-126
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = +3
Query: 1842 IAIYGKNFCVSAKNAFMLLMRNIVR 1916
IAIYG NFC SA+NAF LLMRNI+R
Sbjct: 566 IAIYGTNFCTSARNAFFLLMRNIIR 590
>ref|NP_689910.2| choline transporter-like protein 5 isoform A [Homo sapiens].
Length = 719
Score = 418 bits (1074), Expect(2) = e-122
Identities = 216/575 (37%), Positives = 316/575 (54%), Gaps = 21/575 (3%)
Frame = +2
Query: 77 DKAYGKPAKYDPSFRGPIRNRSCTDIICCVLFFVFILGYIAVGLVAWVYGDPQQVLYPRN 256
++ +G P YDP F+GP+ NRSCTD++CC++F + I+GYI +GLVAWV+GDP++ YP +
Sbjct: 14 EEDFGDPRTYDPDFKGPVANRSCTDVLCCMIFLLCIIGYIVLGLVAWVHGDPRRAAYPTD 73
Query: 257 SSGAYCGIG--ENKDKPYLLYFNIFSCVLTTNIIAVAQNGLDCPTPQVCVSSCPAVSWTV 430
S G +CG N++K L YFN+ C + ++ L CPT Q+CVS CP T
Sbjct: 74 SQGHFCGQKGTPNENKTILFYFNLLRCTSPSVLL-----NLQCPTTQICVSKCPEKFLTY 128
Query: 431 ATNQLSQTVGQVFYAANRSFCLPGVPGDMPVHQSLSQELCPSFLLPSSPALGRCFP---W 601
QL T + ++ R FC + Q L + CP+ + PS P L RCFP
Sbjct: 129 VEMQLLYTKDKSYWEDYRQFCKTTAKPVKSLTQLLLDDDCPTAIFPSKPFLQRCFPDFST 188
Query: 602 PNSTVPEVPEI--------SNTSISQGIS--GLLDSLNARDISVKIFEDFAQSWYWIXXX 751
N T+ ++ + + + GI+ G+ L+A+ + +K+FED+A++WYWI
Sbjct: 189 KNGTLTIGSKMMFQDGNGGTRSVVELGIAANGINKLLDAKSLGLKVFEDYARTWYWILIG 248
Query: 752 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYHCWNEYRLLRDKGAS---ISQ 922
+HC+ +Y L+++ +S I
Sbjct: 249 LTIAMVLSWIFLILLRFIAGCLFWVFMIGVIGIIGYGIWHCYQQYTNLQERPSSVLTIYD 308
Query: 923 LGFTTNLSAYSSVQETWXXXXXXXXXXXXXXXXXXXXXXXXXXXAIALLEEASRAVGQMM 1102
+G TN+S Y +Q+TW AI LL+E S+A+G +
Sbjct: 309 IGIQTNISMYFELQQTWFTFMIILCIIEVIVILMLIFLRNRIRVAIILLKEGSKAIGYVP 368
Query: 1103 STLFYPLVTFVLLLVCIAYWAMTALYLATSGQPQYVLWAPNVSLAGCEKVMMNTSCDPM- 1279
STL YP +TF+LL +CI YW +TA++LATSG P Y + AP G + N +CDP
Sbjct: 369 STLVYPALTFILLSICICYWVVTAVFLATSGVPVYKVIAP-----GGHCIHENQTCDPEI 423
Query: 1280 --NQPVNSTCPGLMCVFQGYLSTGLVQRSLFNLQIYGVLGLFWTINWVLALGQCVLAGAF 1453
+ CPG +C F Y L + + +Y + W IN+V+ALGQC LAGAF
Sbjct: 424 FNTTEIAKACPGALCNFAFYGGKSLYHQYIPTFHVYNLFVFLWLINFVIALGQCALAGAF 483
Query: 1454 ASFYWAFHKPRDIPTFPLSSAFIRTLRYHTGSLAFGALILTLVQIARAILEYIDHKLRGV 1633
A++YWA KP DIP +PL +AF R +RYHTGSLAFG+LI+ L+Q+ + +LEY+DH+L+
Sbjct: 484 ATYYWAMKKPDDIPRYPLFTAFGRAIRYHTGSLAFGSLIIALIQMFKIVLEYLDHRLKRT 543
Query: 1634 QNPVARCIMCCFKCCLWCLEKFIKFLNRNAYIMVS 1738
QN +++ + CC +CC WCLE IKFLNRNAYIM++
Sbjct: 544 QNTLSKFLQCCLRCCFWCLENAIKFLNRNAYIMIA 578
Score = 42.0 bits (97), Expect(2) = e-122
Identities = 18/25 (72%), Positives = 23/25 (92%)
Frame = +3
Query: 1842 IAIYGKNFCVSAKNAFMLLMRNIVR 1916
IAIYG+NFC SAK+AF LLMRN+++
Sbjct: 577 IAIYGRNFCRSAKDAFNLLMRNVLK 601
>ref|NP_001123530.1| choline transporter-like protein 5 isoform B [Homo sapiens].
Length = 717
Score = 418 bits (1074), Expect(2) = e-122
Identities = 216/575 (37%), Positives = 316/575 (54%), Gaps = 21/575 (3%)
Frame = +2
Query: 77 DKAYGKPAKYDPSFRGPIRNRSCTDIICCVLFFVFILGYIAVGLVAWVYGDPQQVLYPRN 256
++ +G P YDP F+GP+ NRSCTD++CC++F + I+GYI +GLVAWV+GDP++ YP +
Sbjct: 14 EEDFGDPRTYDPDFKGPVANRSCTDVLCCMIFLLCIIGYIVLGLVAWVHGDPRRAAYPTD 73
Query: 257 SSGAYCGIG--ENKDKPYLLYFNIFSCVLTTNIIAVAQNGLDCPTPQVCVSSCPAVSWTV 430
S G +CG N++K L YFN+ C + ++ L CPT Q+CVS CP T
Sbjct: 74 SQGHFCGQKGTPNENKTILFYFNLLRCTSPSVLL-----NLQCPTTQICVSKCPEKFLTY 128
Query: 431 ATNQLSQTVGQVFYAANRSFCLPGVPGDMPVHQSLSQELCPSFLLPSSPALGRCFP---W 601
QL T + ++ R FC + Q L + CP+ + PS P L RCFP
Sbjct: 129 VEMQLLYTKDKSYWEDYRQFCKTTAKPVKSLTQLLLDDDCPTAIFPSKPFLQRCFPDFST 188
Query: 602 PNSTVPEVPEI--------SNTSISQGIS--GLLDSLNARDISVKIFEDFAQSWYWIXXX 751
N T+ ++ + + + GI+ G+ L+A+ + +K+FED+A++WYWI
Sbjct: 189 KNGTLTIGSKMMFQDGNGGTRSVVELGIAANGINKLLDAKSLGLKVFEDYARTWYWILIG 248
Query: 752 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYHCWNEYRLLRDKGAS---ISQ 922
+HC+ +Y L+++ +S I
Sbjct: 249 LTIAMVLSWIFLILLRFIAGCLFWVFMIGVIGIIGYGIWHCYQQYTNLQERPSSVLTIYD 308
Query: 923 LGFTTNLSAYSSVQETWXXXXXXXXXXXXXXXXXXXXXXXXXXXAIALLEEASRAVGQMM 1102
+G TN+S Y +Q+TW AI LL+E S+A+G +
Sbjct: 309 IGIQTNISMYFELQQTWFTFMIILCIIEVIVILMLIFLRNRIRVAIILLKEGSKAIGYVP 368
Query: 1103 STLFYPLVTFVLLLVCIAYWAMTALYLATSGQPQYVLWAPNVSLAGCEKVMMNTSCDPM- 1279
STL YP +TF+LL +CI YW +TA++LATSG P Y + AP G + N +CDP
Sbjct: 369 STLVYPALTFILLSICICYWVVTAVFLATSGVPVYKVIAP-----GGHCIHENQTCDPEI 423
Query: 1280 --NQPVNSTCPGLMCVFQGYLSTGLVQRSLFNLQIYGVLGLFWTINWVLALGQCVLAGAF 1453
+ CPG +C F Y L + + +Y + W IN+V+ALGQC LAGAF
Sbjct: 424 FNTTEIAKACPGALCNFAFYGGKSLYHQYIPTFHVYNLFVFLWLINFVIALGQCALAGAF 483
Query: 1454 ASFYWAFHKPRDIPTFPLSSAFIRTLRYHTGSLAFGALILTLVQIARAILEYIDHKLRGV 1633
A++YWA KP DIP +PL +AF R +RYHTGSLAFG+LI+ L+Q+ + +LEY+DH+L+
Sbjct: 484 ATYYWAMKKPDDIPRYPLFTAFGRAIRYHTGSLAFGSLIIALIQMFKIVLEYLDHRLKRT 543
Query: 1634 QNPVARCIMCCFKCCLWCLEKFIKFLNRNAYIMVS 1738
QN +++ + CC +CC WCLE IKFLNRNAYIM++
Sbjct: 544 QNTLSKFLQCCLRCCFWCLENAIKFLNRNAYIMIA 578
Score = 42.0 bits (97), Expect(2) = e-122
Identities = 18/25 (72%), Positives = 23/25 (92%)
Frame = +3
Query: 1842 IAIYGKNFCVSAKNAFMLLMRNIVR 1916
IAIYG+NFC SAK+AF LLMRN+++
Sbjct: 577 IAIYGRNFCRSAKDAFNLLMRNVLK 601
>ref|NP_536856.2| choline transporter-like protein 1 [Homo sapiens].
Length = 657
Score = 119 bits (299), Expect(2) = 3e-30
Identities = 74/223 (33%), Positives = 112/223 (50%)
Frame = +2
Query: 1058 IALLEEASRAVGQMMSTLFYPLVTFVLLLVCIAYWAMTALYLATSGQPQYVLWAPNVSLA 1237
IAL A + + +F P TF L++ YW MT L+L T+G P
Sbjct: 318 IALFHVAGKVFIHLPLLVFQPFWTFFALVLFWVYWIMTLLFLGTTGSPV----------- 366
Query: 1238 GCEKVMMNTSCDPMNQPVNSTCPGLMCVFQGYLSTGLVQRSLFNLQIYGVLGLFWTINWV 1417
N+ QG++ + L + Y V+GL W ++
Sbjct: 367 -------------QNE-------------QGFVEFK-ISGPLQYMWWYHVVGLIWISEFI 399
Query: 1418 LALGQCVLAGAFASFYWAFHKPRDIPTFPLSSAFIRTLRYHTGSLAFGALILTLVQIARA 1597
LA Q +AGA ++Y+ K R++P P+ ++ R +RYH G++A G+ I+TLV+I R
Sbjct: 400 LACQQMTVAGAVVTYYFTRDK-RNLPFTPILASVNRLIRYHLGTVAKGSFIITLVKIPRM 458
Query: 1598 ILEYIDHKLRGVQNPVARCIMCCFKCCLWCLEKFIKFLNRNAY 1726
IL YI +L+G +N ARC++ CCLWCLEK + +LN+NAY
Sbjct: 459 ILMYIHSQLKGKENACARCVLKSCICCLWCLEKCLNYLNQNAY 501
Score = 32.3 bits (72), Expect(2) = 3e-30
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +3
Query: 1836 TQIAIYGKNFCVSAKNAFMLLMRNIVR 1916
T AI NFC SAK+AF++L+ N +R
Sbjct: 502 TATAINSTNFCTSAKDAFVILVENALR 528
>ref|NP_001107578.1| choline transporter-like protein 3 isoform 1 [Homo sapiens].
Length = 653
Score = 85.9 bits (211), Expect(2) = 2e-19
Identities = 58/224 (25%), Positives = 98/224 (43%), Gaps = 1/224 (0%)
Frame = +2
Query: 1058 IALLEEASRAVGQMMSTLFYPLVTFVLLLVCIAYWAMTALYLATSGQPQYVLWAPNVSLA 1237
+ L + ++A+ LF PL TF +L+ W L L T+G Q
Sbjct: 313 VELFQITNKAISSAPFLLFQPLWTFAILIFFWVLWVAVLLSLGTAGAAQ----------- 361
Query: 1238 GCEKVMMNTSCDPMNQPVNSTCPGLMCVFQGYLSTGLVQRSLFNLQIYGVLGLFWTINWV 1417
V +G + + Y ++GL WT ++
Sbjct: 362 ---------------------------VMEGGQVEYKPLSGIRYMWSYHLIGLIWTSEFI 394
Query: 1418 LALGQCVLAGAFASFYWAFHKPRDIPTFPLSSAFIRTLRYHTGSLAFGALILTLVQIARA 1597
LA Q +AGA + Y+ K D P P+ S+ YH G++ G+ ++++V+I R
Sbjct: 395 LACQQMTIAGAVVTCYFNRSK-NDPPDHPILSSLSILFFYHQGTVVKGSFLISVVRIPRI 453
Query: 1598 ILEYIDHKLRGVQN-PVARCIMCCFKCCLWCLEKFIKFLNRNAY 1726
I+ Y+ + L+ Q+ ++R + C CC WCL+K++ LN+NAY
Sbjct: 454 IVMYMQNALKEQQHGALSRYLFRCCYCCFWCLDKYLLHLNQNAY 497
Score = 30.0 bits (66), Expect(2) = 2e-19
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +3
Query: 1836 TQIAIYGKNFCVSAKNAFMLLMRN 1907
T AI G +FC SAK+AF +L +N
Sbjct: 498 TTTAINGTDFCTSAKDAFKILSKN 521
>ref|NP_689582.2| choline transporter-like protein 3 isoform 2 [Homo sapiens].
Length = 605
Score = 85.9 bits (211), Expect(2) = 2e-19
Identities = 58/224 (25%), Positives = 98/224 (43%), Gaps = 1/224 (0%)
Frame = +2
Query: 1058 IALLEEASRAVGQMMSTLFYPLVTFVLLLVCIAYWAMTALYLATSGQPQYVLWAPNVSLA 1237
+ L + ++A+ LF PL TF +L+ W L L T+G Q
Sbjct: 265 VELFQITNKAISSAPFLLFQPLWTFAILIFFWVLWVAVLLSLGTAGAAQ----------- 313
Query: 1238 GCEKVMMNTSCDPMNQPVNSTCPGLMCVFQGYLSTGLVQRSLFNLQIYGVLGLFWTINWV 1417
V +G + + Y ++GL WT ++
Sbjct: 314 ---------------------------VMEGGQVEYKPLSGIRYMWSYHLIGLIWTSEFI 346
Query: 1418 LALGQCVLAGAFASFYWAFHKPRDIPTFPLSSAFIRTLRYHTGSLAFGALILTLVQIARA 1597
LA Q +AGA + Y+ K D P P+ S+ YH G++ G+ ++++V+I R
Sbjct: 347 LACQQMTIAGAVVTCYFNRSK-NDPPDHPILSSLSILFFYHQGTVVKGSFLISVVRIPRI 405
Query: 1598 ILEYIDHKLRGVQN-PVARCIMCCFKCCLWCLEKFIKFLNRNAY 1726
I+ Y+ + L+ Q+ ++R + C CC WCL+K++ LN+NAY
Sbjct: 406 IVMYMQNALKEQQHGALSRYLFRCCYCCFWCLDKYLLHLNQNAY 449
Score = 30.0 bits (66), Expect(2) = 2e-19
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +3
Query: 1836 TQIAIYGKNFCVSAKNAFMLLMRN 1907
T AI G +FC SAK+AF +L +N
Sbjct: 450 TTTAINGTDFCTSAKDAFKILSKN 473
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 86,567,629
Number of extensions: 2784307
Number of successful extensions: 12281
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 12157
Number of HSP's successfully gapped: 28
Length of query: 660
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 551
Effective length of database: 14,704,088
Effective search space: 8101952488
Effective search space used: 8101952488
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014213
(1980 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 656 0.0
>Sscrofa_Chr07
|| Length = 134764511
Score = 656 bits (331), Expect = 0.0
Identities = 350/355 (98%), Gaps = 1/355 (0%)
Strand = Plus / Plus
Query: 1627 aggagtccaaaacccggtggcccgctgtatcatgtgctgcttcaagtgctgcctctggtg 1686
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27851215 aggagcccagaacccggtggcccgctgtatcatgtgctgcttcaagtgctgcctctggtg 27851274
Query: 1687 tttggaaaagtttatcaagttcctgaaccgtaatgcatacatcatggtgagcccctgcac 1746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27851275 tttggaaaagtttatcaagttcctgaaccgtaatgcatacatcatggtgagcccctgcac 27851334
Query: 1747 gtgcgcaccctcttgctctggggcctttgacccgggcctcccgttctcccaggtaacctc 1806
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27851335 atgcgcaccctcttgctctggggcctttgacccgggcctcccgttctcccaggtaacctc 27851394
Query: 1807 accacaggtaactctggactttccacctcactcagattgccatctatgggaagaatttct 1866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27851395 accacaggtaactctggactttccacctcactcagattgccatctatgggaagaatttct 27851454
Query: 1867 gtgtctcagccaaaaacgccttcatgctgctcatgcggaacattgtcaggtcaggctgtc 1926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27851455 gtgtctcagccaaaaacgccttcatgctgctcatgcggaacattgtcaggtcaggctgtc 27851514
Query: 1927 accaccccaccccaaccctggtgatctccccgc-aggccagcttcttgggcatgc 1980
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 27851515 accaccccaccccaaccctggtgatctccccgcaaggccagcttcctgggcatgc 27851569
Score = 511 bits (258), Expect = e-142
Identities = 258/258 (100%)
Strand = Plus / Plus
Query: 1279 gaaccagccagtgaactccacctgcccagggctgatgtgcgtcttccagggctacttgtc 1338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27850677 gaaccagccagtgaactccacctgcccagggctgatgtgcgtcttccagggctacttgtc 27850736
Query: 1339 cacaggcctggtacaacgttctctcttcaacttgcaaatctacggggtcctggggctatt 1398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27850737 cacaggcctggtacaacgttctctcttcaacttgcaaatctacggggtcctggggctatt 27850796
Query: 1399 ctggaccatcaactgggtcctggccctgggccagtgtgtcctggctggggccttcgcctc 1458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27850797 ctggaccatcaactgggtcctggccctgggccagtgtgtcctggctggggccttcgcctc 27850856
Query: 1459 cttctactgggccttccacaagccccgggacattcctacctttcccctgagctctgcctt 1518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27850857 cttctactgggccttccacaagccccgggacattcctacctttcccctgagctctgcctt 27850916
Query: 1519 catccgcacactccggta 1536
||||||||||||||||||
Sbjct: 27850917 catccgcacactccggta 27850934
Score = 468 bits (236), Expect = e-129
Identities = 236/236 (100%)
Strand = Plus / Plus
Query: 748 cgccctaggcgtggctctggtcctgagcctgctgtttgtcctgcttctgcgcctggtggc 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27841459 cgccctaggcgtggctctggtcctgagcctgctgtttgtcctgcttctgcgcctggtggc 27841518
Query: 808 tgggcccctggtgttcgtgctgatcataggagtgctgggggtgctggcctatggcatcta 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27841519 tgggcccctggtgttcgtgctgatcataggagtgctgggggtgctggcctatggcatcta 27841578
Query: 868 ccactgctggaacgagtaccgcttgctgcgggacaagggcgcctccatttcccagctggg 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27841579 ccactgctggaacgagtaccgcttgctgcgggacaagggcgcctccatttcccagctggg 27841638
Query: 928 cttcaccaccaacctcagcgcctacagcagcgtccaggagacctggctagcagccc 983
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27841639 cttcaccaccaacctcagcgcctacagcagcgtccaggagacctggctagcagccc 27841694
Score = 254 bits (128), Expect = 2e-64
Identities = 131/132 (99%)
Strand = Plus / Plus
Query: 386 ccccaggtgtgtgtgtcctcctgcccagcggtctcatggaccgtggcaacaaaccaactc 445
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 27839407 ccccaggtgtgtgtgtcctcctgcccagcggtctcatggaccgtggcaacaaaccagctc 27839466
Query: 446 tcacagacggttgggcaggtgttctacgctgcaaacaggagcttttgtctgccaggggtg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27839467 tcacagacggttgggcaggtgttctacgctgcaaacaggagcttttgtctgccaggggtg 27839526
Query: 506 cctggggacatg 517
||||||||||||
Sbjct: 27839527 cctggggacatg 27839538
Score = 204 bits (103), Expect = 1e-49
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 1177 atacctggccacctcggggcaaccccagtacgtgctctgggcacccaacgtcagcctggc 1236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27842730 atacctggccacctcggggcaaccccagtacgtgctctgggcacccaacgtcagcctggc 27842789
Query: 1237 gggctgtgagaaagtgatgatgaatacatcatgtgaccccatg 1279
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27842790 gggctgtgagaaagtgatgatgaatacatcatgtgaccccatg 27842832
Score = 202 bits (102), Expect = 5e-49
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 292 agataaaccctatctcctgtacttcaacatcttcagctgcgtcctaaccaccaacatcat 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27839225 agataaaccctatctcctgtacttcaacatcttcagctgcgtcctaaccaccaacatcat 27839284
Query: 352 cgcggtcgcccagaatggtctggactgccccacgccccaggt 393
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27839285 cgcggtcgcccagaatggtctggactgccccacgccccaggt 27839326
Score = 200 bits (101), Expect = 2e-48
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 984 tgatcctgctggctgtgcttgaaggcatcctgctactaatgctcatcttcctgcggcagc 1043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27841786 tgatcctgctggctgtgcttgaaggcatcctgctactaatgctcatcttcctgcggcagc 27841845
Query: 1044 ggattcgcatagccattgccctcctggaggaagccagcagg 1084
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 27841846 ggattcgcatagccattgccctcctggaggaagccagcagg 27841886
Score = 192 bits (97), Expect = 5e-46
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 1080 gcagggctgtaggccagatgatgtctaccctgttctacccgctggtcaccttcgtcctcc 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27842382 gcagggctgtaggccagatgatgtctaccctgttctacccgctggtcaccttcgtcctcc 27842441
Query: 1140 tgctcgtctgcattgcctactgggccatgaccgccct 1176
|||||||||||||||||||||||||||||||||||||
Sbjct: 27842442 tgctcgtctgcattgcctactgggccatgaccgccct 27842478
Score = 184 bits (93), Expect = 1e-43
Identities = 96/97 (98%)
Strand = Plus / Plus
Query: 1533 ggtatcacactgggtcgctagccttcggagccctcatcctgaccctggtgcaaatagcac 1592
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 27851017 ggtatcacactgggtcgctagccttcggagccctcatcctgaccctggtgcagatagcac 27851076
Query: 1593 gggccatcctggagtacattgaccacaaactgagagg 1629
|||||||||||||||||||||||||||||||||||||
Sbjct: 27851077 gggccatcctggagtacattgaccacaaactgagagg 27851113
Score = 178 bits (90), Expect = 8e-42
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1 ggtggcaggtgagctgccaggtctcccaggctccaatcactccggagactgagccatggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27834759 ggtggcaggtgagctgccaggtctcccaggctccaatcactccggagactgagccatggg 27834818
Query: 61 ggaaaaacaggacccagacaaggcctacgg 90
||||||||||||||||||||||||||||||
Sbjct: 27834819 ggaaaaacaggacccagacaaggcctacgg 27834848
Score = 172 bits (87), Expect = 5e-40
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 574 tccagctctggggcgttgttttccgtggcccaatagcactgtgcccgaggtcccggagat 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27840671 tccagctctggggcgttgttttccgtggcccaatagcactgtgcccgaggtcccggagat 27840730
Query: 634 ctccaacacgtccatctcccagggcat 660
|||||||||||||||||||||||||||
Sbjct: 27840731 ctccaacacgtccatctcccagggcat 27840757
Score = 170 bits (86), Expect = 2e-39
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 662 agtggtcttcttgacagcctcaatgcccgcgacatcagcgtcaagatctttgaagacttt 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27840834 agtggtcttcttgacagcctcaatgcccgcgacatcagcgtcaagatctttgaagacttt 27840893
Query: 722 gcccagtcctggtattggattcttgc 747
||||||||||||||||||||||||||
Sbjct: 27840894 gcccagtcctggtattggattcttgc 27840919
Score = 159 bits (80), Expect = 7e-36
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 212 gcctgggtctatggagacccccagcaagtcctctacccccggaactcttctggggcctat 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27837821 gcctgggtctatggagacccccagcaagtcctctacccccggaactcttctggggcctat 27837880
Query: 272 tgcgggatcggggaaaacaa 291
||||||||||||||||||||
Sbjct: 27837881 tgcgggatcggggaaaacaa 27837900
Score = 153 bits (77), Expect = 4e-34
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 136 caggagctgcacggatatcatctgctgtgtcctcttctttgtgttcattctgggttacat 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27837605 caggagctgcacggatatcatctgctgtgtcctcttctttgtgttcattctgggttacat 27837664
Query: 196 tgctgtggggcttgtgg 212
|||||||||||||||||
Sbjct: 27837665 tgctgtggggcttgtgg 27837681
Score = 123 bits (62), Expect = 4e-25
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 517 gccagtgcaccaaagcctgagccaggagctctgccccagtttcctcctcccttccagtcc 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27839677 gccagtgcaccaaagcctgagccaggagctctgccccagtttcctcctcccttccagtcc 27839736
Query: 577 ag 578
||
Sbjct: 27839737 ag 27839738
Score = 101 bits (51), Expect = 1e-18
Identities = 51/51 (100%)
Strand = Plus / Plus
Query: 89 gggaaaccagccaagtatgacccctccttccgaggccccatcaggaacagg 139
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27836641 gggaaaccagccaagtatgacccctccttccgaggccccatcaggaacagg 27836691
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 54,453,855
Number of extensions: 383
Number of successful extensions: 383
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 383
Number of HSP's successfully gapped: 16
Length of query: 1980
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1958
Effective length of database: 2,808,408,574
Effective search space: 5498863987892
Effective search space used: 5498863987892
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)