Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014214
(1050 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001040073.1| peroxisomal NADH pyrophosphatase NUDT12 [Bos... 428 e-120
Alignment gi|NP_001098958.1| DNA-binding protein RFXANK [Bos taurus]. 61 1e-09
Alignment gi|NP_001039754.1| ankyrin repeat family A protein 2 [Bos tauru... 58 2e-08
Alignment gi|NP_776488.1| ankyrin repeat, SAM and basic leucine zipper do... 57 4e-08
Alignment gi|NP_001193192.1| histone-lysine N-methyltransferase, H3 lysin... 56 5e-08
Alignment gi|XP_002697391.1| PREDICTED: euchromatic histone-lysine N-meth... 56 5e-08
Alignment gi|NP_001068852.1| ankyrin repeat and MYND domain-containing pr... 53 5e-07
Alignment gi|XP_002685395.1| PREDICTED: rolling pebbles-like [Bos taurus]. 53 5e-07
Alignment gi|XP_584693.3| PREDICTED: tetratricopeptide repeat, ankyrin re... 53 5e-07
Alignment gi|XP_595054.4| PREDICTED: cajalin 2 [Bos taurus]. 53 5e-07
>ref|NP_001040073.1| peroxisomal NADH pyrophosphatase NUDT12 [Bos taurus].
Length = 444
Score = 428 bits (1101), Expect = e-120
Identities = 215/247 (87%), Positives = 224/247 (90%)
Frame = +1
Query: 310 MSFVKRSPNQEIISQFHHSAAEGDIARLTLILSHSPSLLNETSENGWTALMYAARNGHPD 489
MS VKRS NQEIISQFH+SAAEGDIA+LT ILSHSPSLLNETSENGW+AL+
Sbjct: 1 MSSVKRSLNQEIISQFHYSAAEGDIAKLTAILSHSPSLLNETSENGWSALI--------- 51
Query: 490 AVQFLLEKGCDRSIVNKSRQTALDIAKFWGYKHIANLLANAKGGKKPWFLTSEVEECENY 669
CDRSIVNKSRQTALDIAKFWGYKHIANLLANAKGGKKPWFLT+EVEECENY
Sbjct: 52 ---------CDRSIVNKSRQTALDIAKFWGYKHIANLLANAKGGKKPWFLTNEVEECENY 102
Query: 670 FSRTLLDRKSEKRNNSNWLLAKESHPATVYILFSDLNPLVTLGGNKESFQQPEVRLCQLN 849
FS+TLLDRKSEKRNNS+WLLAKESHPATVYILFSDLNPLVTLGGNKESFQQPEVRLCQLN
Sbjct: 103 FSKTLLDRKSEKRNNSDWLLAKESHPATVYILFSDLNPLVTLGGNKESFQQPEVRLCQLN 162
Query: 850 YTDIKDYLAQPEKITLIFLGVELEMRKELFNYAGEISREEEDGLVAWFALGIDPVAAEEF 1029
YTDIKDYLAQPEKITLIFLGVELEM+KE FNYAGEIS+EEEDGLVAWFALGID VAAEEF
Sbjct: 163 YTDIKDYLAQPEKITLIFLGVELEMKKEFFNYAGEISKEEEDGLVAWFALGIDTVAAEEF 222
Query: 1030 KQRHENC 1050
KQRHENC
Sbjct: 223 KQRHENC 229
>ref|NP_001098958.1| DNA-binding protein RFXANK [Bos taurus].
Length = 228
Score = 61.2 bits (147), Expect = 1e-09
Identities = 32/82 (39%), Positives = 50/82 (60%)
Frame = +1
Query: 358 HHSAAEGDIARLTLILSHSPSLLNETSENGWTALMYAARNGHPDAVQFLLEKGCDRSIVN 537
H AA+G++++L L +L+N+ E G+T L++A+ G + V+FLLE G D I+
Sbjct: 95 HQLAAQGELSQLKEHLRKGDNLINKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILA 154
Query: 538 KSRQTALDIAKFWGYKHIANLL 603
K R++AL +A GY I LL
Sbjct: 155 KERESALSLASTGGYTDIVGLL 176
>ref|NP_001039754.1| ankyrin repeat family A protein 2 [Bos taurus].
Length = 313
Score = 57.8 bits (138), Expect = 2e-08
Identities = 30/82 (36%), Positives = 48/82 (58%)
Frame = +1
Query: 358 HHSAAEGDIARLTLILSHSPSLLNETSENGWTALMYAARNGHPDAVQFLLEKGCDRSIVN 537
H AA+G++ L + +++N T E G+T LM+AA +G V+FLL+ G D ++
Sbjct: 154 HQLAAQGEMLYLATRIEQE-NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 212
Query: 538 KSRQTALDIAKFWGYKHIANLL 603
K R++AL +A GY I +L
Sbjct: 213 KGRESALSLACSKGYTDIVKML 234
>ref|NP_776488.1| ankyrin repeat, SAM and basic leucine zipper domain-containing
protein 1 [Bos taurus].
Length = 475
Score = 56.6 bits (135), Expect = 4e-08
Identities = 66/236 (27%), Positives = 104/236 (44%), Gaps = 3/236 (1%)
Frame = +1
Query: 337 QEIISQFHHSAAEGDIARLTLILSHSPSLLNETSENGWTALMYAARNGHPDAVQFLLEKG 516
+ +++ ++A +G + L+++H + N ENG+TAL +AAR GH + V LLE G
Sbjct: 147 RRLMTPIMYAARDGHPQVVALLVAHGAEV-NTQDENGYTALTWAARQGHKNVVLKLLELG 205
Query: 517 CDRSIVNKSRQTALDIAKFWGYKHIANLLA---NAKGGKKPWFLTSEVEECENYFSRTLL 687
++ I K +T +IAK + I N L+ N GK LT E C+ LL
Sbjct: 206 ANKMIQTKDGKTPSEIAKRNKHLEIFNFLSLTLNPLEGKLHQ-LTKEESICK------LL 258
Query: 688 DRKSEKRNNSNWLLAKESHPATVYILFSDLNPLVTLGGNKESFQQPEVRLCQLNYTDIKD 867
S+K ++ H + Y F DL E+ L L + D
Sbjct: 259 RTDSDK---------EKDHIFSSYTAFGDL----------------EIFLHGLGLEHMTD 293
Query: 868 YLAQPEKITLIFLGVELEMRKELFNYAGEISREEEDGLVAWFALGIDPVAAEEFKQ 1035
L + E ITL L L MRK+ G SR+++ + A L ++ + E +
Sbjct: 294 LLKERE-ITLRHL---LTMRKDELAKNGITSRDQQKIMAALKELEVEEIKFGELPE 345
>ref|NP_001193192.1| histone-lysine N-methyltransferase, H3 lysine-9 specific 3 [Bos
taurus].
Length = 1211
Score = 56.2 bits (134), Expect = 5e-08
Identities = 27/86 (31%), Positives = 47/86 (54%)
Frame = +1
Query: 358 HHSAAEGDIARLTLILSHSPSLLNETSENGWTALMYAARNGHPDAVQFLLEKGCDRSIVN 537
HH+A G++ ++L+LS +N GWT +++AA + H + ++ LL +G D ++ +
Sbjct: 757 HHAAKIGNLEMVSLLLSTGQVDVNAQDSGGWTPIIWAAEHKHIEVIRMLLTRGADVTLTD 816
Query: 538 KSRQTALDIAKFWGYKHIANLLANAK 615
L A F G IA +L NA+
Sbjct: 817 NEENICLHWASFTGSAAIAEVLLNAR 842
>ref|XP_002697391.1| PREDICTED: euchromatic histone-lysine N-methyltransferase 2 [Bos
taurus].
Length = 1686
Score = 56.2 bits (134), Expect = 5e-08
Identities = 27/86 (31%), Positives = 47/86 (54%)
Frame = +1
Query: 358 HHSAAEGDIARLTLILSHSPSLLNETSENGWTALMYAARNGHPDAVQFLLEKGCDRSIVN 537
HH+A G++ ++L+LS +N GWT +++AA + H + ++ LL +G D ++ +
Sbjct: 1232 HHAAKIGNLEMVSLLLSTGQVDVNAQDSGGWTPIIWAAEHKHIEVIRMLLTRGADVTLTD 1291
Query: 538 KSRQTALDIAKFWGYKHIANLLANAK 615
L A F G IA +L NA+
Sbjct: 1292 NEENICLHWASFTGSAAIAEVLLNAR 1317
>ref|NP_001068852.1| ankyrin repeat and MYND domain-containing protein 2 [Bos taurus].
Length = 442
Score = 52.8 bits (125), Expect = 5e-07
Identities = 27/83 (32%), Positives = 44/83 (53%)
Frame = +1
Query: 361 HSAAEGDIARLTLILSHSPSLLNETSENGWTALMYAARNGHPDAVQFLLEKGCDRSIVNK 540
H+A +G + L+L H + E+G+TALM+AA +G+ D +LE G + +VN
Sbjct: 52 HAAYKGKLDMCKLLLRHGADVNCHQHEHGYTALMFAALSGNKDITWVMLEAGAETDVVNS 111
Query: 541 SRQTALDIAKFWGYKHIANLLAN 609
+TA +A F G ++ N
Sbjct: 112 VGRTAAQMAAFVGQHDCVTIINN 134
>ref|XP_002685395.1| PREDICTED: rolling pebbles-like [Bos taurus].
Length = 1850
Score = 52.8 bits (125), Expect = 5e-07
Identities = 47/170 (27%), Positives = 75/170 (44%), Gaps = 12/170 (7%)
Frame = +1
Query: 364 SAAEGDIARLTLILSHSPSLLNETSENGWTALMYAARNGHPDAVQFLLEKGCDRSIVNKS 543
+A EG ++ + +LS +L + + G +AL +A GH VQFL+E+G + +K+
Sbjct: 1154 AACEGHLSTVEFLLSKGATL-SSLDKEGLSALSWACLKGHRAVVQFLVEEGAEIDQTDKN 1212
Query: 544 RQTALDIAKFWGYKHIANLLANA--------KGGKKPWFLTSEVEECENYFSRTLLDRKS 699
++ LD+A F+G L + G +P C N L RK
Sbjct: 1213 GRSPLDLAAFYGDAETVLYLVDKGAVIEHVDHSGMRP---LDRAIGCRNTSVVVTLLRKG 1269
Query: 700 EKRNNSNWLLAKESHPATVYILFSDL----NPLVTLGGNKESFQQPEVRL 837
K N+ W +A S P + IL L N + G KE+ Q+ + L
Sbjct: 1270 AKLGNAAWAMA-TSKPDILIILLQKLMEEGNVMYKKGKMKEAAQRYQYAL 1318
>ref|XP_584693.3| PREDICTED: tetratricopeptide repeat, ankyrin repeat and coiled-coil
containing 1, partial [Bos taurus].
Length = 1621
Score = 52.8 bits (125), Expect = 5e-07
Identities = 47/170 (27%), Positives = 75/170 (44%), Gaps = 12/170 (7%)
Frame = +1
Query: 364 SAAEGDIARLTLILSHSPSLLNETSENGWTALMYAARNGHPDAVQFLLEKGCDRSIVNKS 543
+A EG ++ + +LS +L + + G +AL +A GH VQFL+E+G + +K+
Sbjct: 925 AACEGHLSTVEFLLSKGATL-SSLDKEGLSALSWACLKGHRAVVQFLVEEGAEIDQTDKN 983
Query: 544 RQTALDIAKFWGYKHIANLLANA--------KGGKKPWFLTSEVEECENYFSRTLLDRKS 699
++ LD+A F+G L + G +P C N L RK
Sbjct: 984 GRSPLDLAAFYGDAETVLYLVDKGAVIEHVDHSGMRP---LDRAIGCRNTSVVVTLLRKG 1040
Query: 700 EKRNNSNWLLAKESHPATVYILFSDL----NPLVTLGGNKESFQQPEVRL 837
K N+ W +A S P + IL L N + G KE+ Q+ + L
Sbjct: 1041 AKLGNAAWAMA-TSKPDILIILLQKLMEEGNVMYKKGKMKEAAQRYQYAL 1089
>ref|XP_595054.4| PREDICTED: cajalin 2 [Bos taurus].
Length = 865
Score = 52.8 bits (125), Expect = 5e-07
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Frame = +1
Query: 358 HHSAAEGDIARLTLILSHSPS--LLNETSENGWTALMYAARNGHPDAVQFLLEKGCDRSI 531
H +A +GD+ + +++ H PS +NE + TAL AA+ GH + V LLE+ D +I
Sbjct: 97 HLAAWKGDVEIVKILIHHGPSHSRVNEQNNENETALHCAAQYGHSEVVAVLLEELTDPTI 156
Query: 532 VNKSRQTALDIAKFWGYKHIANLLANA 612
N +T LD+A +G + ++ +A
Sbjct: 157 RNSKLETPLDLAALYGRLRVVKMIISA 183
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,196,187
Number of extensions: 883671
Number of successful extensions: 3540
Number of sequences better than 1.0e-05: 29
Number of HSP's gapped: 3472
Number of HSP's successfully gapped: 29
Length of query: 350
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 247
Effective length of database: 14,273,310
Effective search space: 3525507570
Effective search space used: 3525507570
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-014214
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014214
(1050 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_545998.2| PREDICTED: similar to nudix -type motif 12 [Can... 457 e-128
Alignment gi|XP_865088.1| PREDICTED: similar to regulatory factor X-assoc... 65 1e-10
Alignment gi|XP_533866.1| PREDICTED: similar to regulatory factor X-assoc... 62 7e-10
Alignment gi|XP_535273.1| PREDICTED: similar to ankyrin repeat, family A ... 58 2e-08
Alignment gi|XP_852716.1| PREDICTED: similar to ankyrin repeat, SAM and b... 57 2e-08
Alignment gi|XP_532084.2| PREDICTED: similar to HLA-B associated transcri... 56 5e-08
Alignment gi|XP_865067.1| PREDICTED: similar to regulatory factor X-assoc... 55 9e-08
Alignment gi|XP_539738.2| PREDICTED: similar to cajalin 2 isoform a [Cani... 53 6e-07
Alignment gi|XP_532483.2| PREDICTED: similar to ankyrin repeat and MYND d... 53 6e-07
Alignment gi|XP_850804.1| PREDICTED: similar to ankyrin repeat and MYND d... 53 6e-07
>ref|XP_545998.2| PREDICTED: similar to nudix -type motif 12 [Canis familiaris].
Length = 460
Score = 457 bits (1175), Expect = e-128
Identities = 224/247 (90%), Positives = 237/247 (95%)
Frame = +1
Query: 310 MSFVKRSPNQEIISQFHHSAAEGDIARLTLILSHSPSLLNETSENGWTALMYAARNGHPD 489
MS +K SP QEIISQFH+SAAEGDIARLT+ILSHSPSLLNETSENGWTALMYAARNGHPD
Sbjct: 1 MSSIK-SPKQEIISQFHYSAAEGDIARLTVILSHSPSLLNETSENGWTALMYAARNGHPD 59
Query: 490 AVQFLLEKGCDRSIVNKSRQTALDIAKFWGYKHIANLLANAKGGKKPWFLTSEVEECENY 669
VQFLL+KGCDRSIVNKSRQTALDIAKFWGYKHIANLLANAK G KPWFL++EVEECENY
Sbjct: 60 VVQFLLDKGCDRSIVNKSRQTALDIAKFWGYKHIANLLANAKSGMKPWFLSNEVEECENY 119
Query: 670 FSRTLLDRKSEKRNNSNWLLAKESHPATVYILFSDLNPLVTLGGNKESFQQPEVRLCQLN 849
FSRTLLDRKSEKRNNS+WLLAKESHPATVYILFSDLNPLVTLGGNKE+FQQPEVRLCQLN
Sbjct: 120 FSRTLLDRKSEKRNNSDWLLAKESHPATVYILFSDLNPLVTLGGNKETFQQPEVRLCQLN 179
Query: 850 YTDIKDYLAQPEKITLIFLGVELEMRKELFNYAGEISREEEDGLVAWFALGIDPVAAEEF 1029
YTD+KDYL+QPEKITLIFLGVELEM+KE FNYAGE+ R EEDGLVAWFALG+D VAAEEF
Sbjct: 180 YTDVKDYLSQPEKITLIFLGVELEMKKESFNYAGEVPR-EEDGLVAWFALGVDSVAAEEF 238
Query: 1030 KQRHENC 1050
KQRHENC
Sbjct: 239 KQRHENC 245
>ref|XP_865088.1| PREDICTED: similar to regulatory factor X-associated
ankyrin-containing protein isoform a isoform 6 [Canis
familiaris].
Length = 287
Score = 64.7 bits (156), Expect = 1e-10
Identities = 41/124 (33%), Positives = 65/124 (52%), Gaps = 2/124 (1%)
Frame = +1
Query: 238 RTLQP--RLTGGGWRRSRSCAVFEEEMSFVKRSPNQEIISQFHHSAAEGDIARLTLILSH 411
RTL+P L GG + + + + V P H AA+G++++L L
Sbjct: 80 RTLRPFFSLPGGSSLKHSTTLTNRQRGNEVSALPATLDSLSIHQLAAQGELSQLKEHLRK 139
Query: 412 SPSLLNETSENGWTALMYAARNGHPDAVQFLLEKGCDRSIVNKSRQTALDIAKFWGYKHI 591
+L+N+ E+G+T L++A+ G + V+FLLE G D I+ K R++AL +A GY I
Sbjct: 140 GDNLINKPDEHGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASMGGYTDI 199
Query: 592 ANLL 603
LL
Sbjct: 200 VGLL 203
>ref|XP_533866.1| PREDICTED: similar to regulatory factor X-associated
ankyrin-containing protein isoform a isoform 1 [Canis
familiaris].
Length = 260
Score = 62.4 bits (150), Expect = 7e-10
Identities = 32/82 (39%), Positives = 51/82 (62%)
Frame = +1
Query: 358 HHSAAEGDIARLTLILSHSPSLLNETSENGWTALMYAARNGHPDAVQFLLEKGCDRSIVN 537
H AA+G++++L L +L+N+ E+G+T L++A+ G + V+FLLE G D I+
Sbjct: 95 HQLAAQGELSQLKEHLRKGDNLINKPDEHGFTPLIWASAFGEIETVRFLLEWGADPHILA 154
Query: 538 KSRQTALDIAKFWGYKHIANLL 603
K R++AL +A GY I LL
Sbjct: 155 KERESALSLASMGGYTDIVGLL 176
>ref|XP_535273.1| PREDICTED: similar to ankyrin repeat, family A (RFXANK-like), 2
isoform 1 [Canis familiaris].
Length = 313
Score = 57.8 bits (138), Expect = 2e-08
Identities = 30/82 (36%), Positives = 48/82 (58%)
Frame = +1
Query: 358 HHSAAEGDIARLTLILSHSPSLLNETSENGWTALMYAARNGHPDAVQFLLEKGCDRSIVN 537
H AA+G++ L + +++N T E G+T LM+AA +G V+FLL+ G D ++
Sbjct: 154 HQLAAQGEMLYLATRIEQE-NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 212
Query: 538 KSRQTALDIAKFWGYKHIANLL 603
K R++AL +A GY I +L
Sbjct: 213 KGRESALSLACSKGYTDIVKML 234
>ref|XP_852716.1| PREDICTED: similar to ankyrin repeat, SAM and basic leucine zipper
domain containing 1 isoform 1 [Canis familiaris].
Length = 475
Score = 57.4 bits (137), Expect = 2e-08
Identities = 65/238 (27%), Positives = 106/238 (44%), Gaps = 3/238 (1%)
Frame = +1
Query: 331 PNQEIISQFHHSAAEGDIARLTLILSHSPSLLNETSENGWTALMYAARNGHPDAVQFLLE 510
P + +++ ++A +G + L+++H + N ENG+TAL +AAR GH + V LLE
Sbjct: 145 PCRRLMTPIMYAARDGHPQVVALLVAHGAEV-NTQDENGYTALTWAARQGHKNVVLKLLE 203
Query: 511 KGCDRSIVNKSRQTALDIAKFWGYKHIANLLA---NAKGGKKPWFLTSEVEECENYFSRT 681
G ++ + K +T +IAK + I + L+ N GK LT E C+
Sbjct: 204 LGANKMLQTKDGKTPSEIAKRNKHLEIFSFLSLTLNPLEGKLQ-HLTKEETICK------ 256
Query: 682 LLDRKSEKRNNSNWLLAKESHPATVYILFSDLNPLVTLGGNKESFQQPEVRLCQLNYTDI 861
LL S+K ++ H + Y F DL E+ L L +
Sbjct: 257 LLTMDSDK---------EKDHIFSSYTAFGDL----------------EIFLHGLGLEHM 291
Query: 862 KDYLAQPEKITLIFLGVELEMRKELFNYAGEISREEEDGLVAWFALGIDPVAAEEFKQ 1035
D L + + ITL L L M+K+ F G SR+++ L A L ++ + E +
Sbjct: 292 MDLLKERD-ITLRHL---LTMQKDEFTKNGITSRDQQKILAALKELEVEEIKFGELPE 345
>ref|XP_532084.2| PREDICTED: similar to HLA-B associated transcript 8 isoform a
[Canis familiaris].
Length = 1138
Score = 56.2 bits (134), Expect = 5e-08
Identities = 27/86 (31%), Positives = 47/86 (54%)
Frame = +1
Query: 358 HHSAAEGDIARLTLILSHSPSLLNETSENGWTALMYAARNGHPDAVQFLLEKGCDRSIVN 537
HH+A G++ ++L+LS +N GWT +++AA + H + ++ LL +G D ++ +
Sbjct: 684 HHAAKIGNLEMVSLLLSTGQVDVNAQDSGGWTPIIWAAEHKHIEVIRMLLTRGADVTLTD 743
Query: 538 KSRQTALDIAKFWGYKHIANLLANAK 615
L A F G IA +L NA+
Sbjct: 744 NEENICLHWASFTGSAAIAEVLLNAR 769
>ref|XP_865067.1| PREDICTED: similar to regulatory factor X-associated
ankyrin-containing protein isoform a isoform 5 [Canis
familiaris].
Length = 272
Score = 55.5 bits (132), Expect = 9e-08
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 13/95 (13%)
Frame = +1
Query: 358 HHSAAEGDIARL-------------TLILSHSPSLLNETSENGWTALMYAARNGHPDAVQ 498
H AA+G++++L T L +L+N+ E+G+T L++A+ G + V+
Sbjct: 94 HQLAAQGELSQLKEHLRKGVCPHNGTTPLLPGDNLINKPDEHGFTPLIWASAFGEIETVR 153
Query: 499 FLLEKGCDRSIVNKSRQTALDIAKFWGYKHIANLL 603
FLLE G D I+ K R++AL +A GY I LL
Sbjct: 154 FLLEWGADPHILAKERESALSLASMGGYTDIVGLL 188
>ref|XP_539738.2| PREDICTED: similar to cajalin 2 isoform a [Canis familiaris].
Length = 1267
Score = 52.8 bits (125), Expect = 6e-07
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Frame = +1
Query: 358 HHSAAEGDIARLTLILSHSPS--LLNETSENGWTALMYAARNGHPDAVQFLLEKGCDRSI 531
H +A +GD+ + +++ H PS +NE + TAL AA+ GH + V LLE+ D +I
Sbjct: 104 HLAAWKGDVEIVKILIHHGPSHSRVNEQNNENETALHCAAQYGHSEVVAVLLEELTDPTI 163
Query: 532 VNKSRQTALDIAKFWGYKHIANLLANA 612
N +T LD+A +G + ++ +A
Sbjct: 164 RNSKLETPLDLAALYGRLRVVKMIISA 190
>ref|XP_532483.2| PREDICTED: similar to ankyrin repeat and MYND domain containing 2
isoform 1 [Canis familiaris].
Length = 395
Score = 52.8 bits (125), Expect = 6e-07
Identities = 27/83 (32%), Positives = 44/83 (53%)
Frame = +1
Query: 361 HSAAEGDIARLTLILSHSPSLLNETSENGWTALMYAARNGHPDAVQFLLEKGCDRSIVNK 540
H+A +G + L+L H + E+G+TALM+AA +G+ D +LE G + +VN
Sbjct: 6 HAAYKGKLDMCKLLLRHGADVNCHQHEHGYTALMFAALSGNKDITWVMLEAGAETDVVNS 65
Query: 541 SRQTALDIAKFWGYKHIANLLAN 609
+TA +A F G ++ N
Sbjct: 66 VGRTAAQMAAFVGQHDCVTIINN 88
>ref|XP_850804.1| PREDICTED: similar to ankyrin repeat and MYND domain containing 2
isoform 3 [Canis familiaris].
Length = 441
Score = 52.8 bits (125), Expect = 6e-07
Identities = 27/83 (32%), Positives = 44/83 (53%)
Frame = +1
Query: 361 HSAAEGDIARLTLILSHSPSLLNETSENGWTALMYAARNGHPDAVQFLLEKGCDRSIVNK 540
H+A +G + L+L H + E+G+TALM+AA +G+ D +LE G + +VN
Sbjct: 52 HAAYKGKLDMCKLLLRHGADVNCHQHEHGYTALMFAALSGNKDITWVMLEAGAETDVVNS 111
Query: 541 SRQTALDIAKFWGYKHIANLLAN 609
+TA +A F G ++ N
Sbjct: 112 VGRTAAQMAAFVGQHDCVTIINN 134
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,873,892
Number of extensions: 913533
Number of successful extensions: 4148
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 4053
Number of HSP's successfully gapped: 26
Length of query: 350
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 246
Effective length of database: 15,407,560
Effective search space: 3790259760
Effective search space used: 3790259760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014214
(1050 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003123863.2| PREDICTED: hypothetical protein LOC100512459... 503 e-143
Alignment gi|NP_001230276.1| hypothetical protein LOC100628226 [Sus scrof... 62 4e-10
Alignment gi|XP_003123740.2| PREDICTED: ankyrin repeat family A protein 2... 58 1e-08
Alignment gi|NP_001095293.1| histone-lysine N-methyltransferase, H3 lysin... 56 3e-08
Alignment gi|XP_003133469.2| PREDICTED: protein TANC1 [Sus scrofa]. 53 3e-07
Alignment gi|NP_001230330.1| ankyrin repeat and MYND domain containing 2 ... 53 3e-07
Alignment gi|XP_003134808.2| PREDICTED: cortactin-binding protein 2-like ... 50 2e-06
Alignment gi|XP_003129757.2| PREDICTED: ankyrin repeat domain-containing ... 50 2e-06
Alignment gi|XP_003355510.1| PREDICTED: serine/threonine-protein phosphat... 50 2e-06
Alignment gi|XP_003124970.2| PREDICTED: metal transporter CNNM3-like [Sus... 50 2e-06
>ref|XP_003123863.2| PREDICTED: hypothetical protein LOC100512459 [Sus scrofa].
Length = 1230
Score = 503 bits (1295), Expect = e-143
Identities = 247/247 (100%), Positives = 247/247 (100%)
Frame = +1
Query: 310 MSFVKRSPNQEIISQFHHSAAEGDIARLTLILSHSPSLLNETSENGWTALMYAARNGHPD 489
MSFVKRSPNQEIISQFHHSAAEGDIARLTLILSHSPSLLNETSENGWTALMYAARNGHPD
Sbjct: 1 MSFVKRSPNQEIISQFHHSAAEGDIARLTLILSHSPSLLNETSENGWTALMYAARNGHPD 60
Query: 490 AVQFLLEKGCDRSIVNKSRQTALDIAKFWGYKHIANLLANAKGGKKPWFLTSEVEECENY 669
AVQFLLEKGCDRSIVNKSRQTALDIAKFWGYKHIANLLANAKGGKKPWFLTSEVEECENY
Sbjct: 61 AVQFLLEKGCDRSIVNKSRQTALDIAKFWGYKHIANLLANAKGGKKPWFLTSEVEECENY 120
Query: 670 FSRTLLDRKSEKRNNSNWLLAKESHPATVYILFSDLNPLVTLGGNKESFQQPEVRLCQLN 849
FSRTLLDRKSEKRNNSNWLLAKESHPATVYILFSDLNPLVTLGGNKESFQQPEVRLCQLN
Sbjct: 121 FSRTLLDRKSEKRNNSNWLLAKESHPATVYILFSDLNPLVTLGGNKESFQQPEVRLCQLN 180
Query: 850 YTDIKDYLAQPEKITLIFLGVELEMRKELFNYAGEISREEEDGLVAWFALGIDPVAAEEF 1029
YTDIKDYLAQPEKITLIFLGVELEMRKELFNYAGEISREEEDGLVAWFALGIDPVAAEEF
Sbjct: 181 YTDIKDYLAQPEKITLIFLGVELEMRKELFNYAGEISREEEDGLVAWFALGIDPVAAEEF 240
Query: 1030 KQRHENC 1050
KQRHENC
Sbjct: 241 KQRHENC 247
>ref|NP_001230276.1| hypothetical protein LOC100628226 [Sus scrofa].
Length = 259
Score = 62.4 bits (150), Expect = 4e-10
Identities = 40/136 (29%), Positives = 66/136 (48%)
Frame = +1
Query: 196 GVAQPRAGVRVQAPRTLQPRLTGGGWRRSRSCAVFEEEMSFVKRSPNQEIISQFHHSAAE 375
G+A+P AG +L+ T +R + + + H AA+
Sbjct: 50 GIAEPDAGTSSPQGSSLKHSTTLTNRQRGNEVSALPATLDSLS----------IHQLAAQ 99
Query: 376 GDIARLTLILSHSPSLLNETSENGWTALMYAARNGHPDAVQFLLEKGCDRSIVNKSRQTA 555
G++++L L +L+N+ E G+T L++A+ G + V+FLLE G D I+ K R++A
Sbjct: 100 GELSQLKEHLRKGDNLINKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESA 159
Query: 556 LDIAKFWGYKHIANLL 603
L +A GY I LL
Sbjct: 160 LSLASTGGYTDIVGLL 175
>ref|XP_003123740.2| PREDICTED: ankyrin repeat family A protein 2-like [Sus scrofa].
Length = 190
Score = 57.8 bits (138), Expect = 1e-08
Identities = 30/82 (36%), Positives = 48/82 (58%)
Frame = +1
Query: 358 HHSAAEGDIARLTLILSHSPSLLNETSENGWTALMYAARNGHPDAVQFLLEKGCDRSIVN 537
H AA+G++ L + +++N T E G+T LM+AA +G V+FLL+ G D ++
Sbjct: 74 HQLAAQGEMLYLATRIEQE-NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 132
Query: 538 KSRQTALDIAKFWGYKHIANLL 603
K R++AL +A GY I +L
Sbjct: 133 KGRESALSLACSKGYTDIVKML 154
>ref|NP_001095293.1| histone-lysine N-methyltransferase, H3 lysine-9 specific 3 [Sus
scrofa].
Length = 1178
Score = 56.2 bits (134), Expect = 3e-08
Identities = 27/86 (31%), Positives = 47/86 (54%)
Frame = +1
Query: 358 HHSAAEGDIARLTLILSHSPSLLNETSENGWTALMYAARNGHPDAVQFLLEKGCDRSIVN 537
HH+A G++ ++L+LS +N GWT +++AA + H + ++ LL +G D ++ +
Sbjct: 724 HHAAKIGNLEMVSLLLSTGQVDVNAQDSGGWTPIIWAAEHKHIEVIRMLLTRGADVTLTD 783
Query: 538 KSRQTALDIAKFWGYKHIANLLANAK 615
L A F G IA +L NA+
Sbjct: 784 NEENICLHWASFTGSAAIAEVLLNAR 809
>ref|XP_003133469.2| PREDICTED: protein TANC1 [Sus scrofa].
Length = 1860
Score = 52.8 bits (125), Expect = 3e-07
Identities = 47/170 (27%), Positives = 75/170 (44%), Gaps = 12/170 (7%)
Frame = +1
Query: 364 SAAEGDIARLTLILSHSPSLLNETSENGWTALMYAARNGHPDAVQFLLEKGCDRSIVNKS 543
+A EG ++ + +LS +L + + G +AL +A GH VQFL+E+G + +K+
Sbjct: 1155 AACEGHLSTVEFLLSKGATL-SSLDKEGLSALSWACLKGHRAVVQFLVEEGAEIDQTDKN 1213
Query: 544 RQTALDIAKFWGYKHIANLLANA--------KGGKKPWFLTSEVEECENYFSRTLLDRKS 699
++ LD+A F+G L + G +P C N L RK
Sbjct: 1214 GRSPLDLAAFYGDAETVLYLVDKGAVIEHVDHSGMRP---LDRAIGCRNTSVVVTLLRKG 1270
Query: 700 EKRNNSNWLLAKESHPATVYILFSDL----NPLVTLGGNKESFQQPEVRL 837
K N+ W +A S P + IL L N + G KE+ Q+ + L
Sbjct: 1271 AKLGNAAWAMA-TSKPDILIILLQKLMEEGNMMYKKGKMKEAAQRYQYAL 1319
>ref|NP_001230330.1| ankyrin repeat and MYND domain containing 2 [Sus scrofa].
Length = 441
Score = 52.8 bits (125), Expect = 3e-07
Identities = 27/83 (32%), Positives = 44/83 (53%)
Frame = +1
Query: 361 HSAAEGDIARLTLILSHSPSLLNETSENGWTALMYAARNGHPDAVQFLLEKGCDRSIVNK 540
H+A +G + L+L H + E+G+TALM+AA +G+ D +LE G + +VN
Sbjct: 52 HAAYKGKLDMCKLLLRHGADVNCHQHEHGYTALMFAALSGNKDITWVMLEAGAETDVVNS 111
Query: 541 SRQTALDIAKFWGYKHIANLLAN 609
+TA +A F G ++ N
Sbjct: 112 VGRTAAQMAAFVGQHDCVTIINN 134
>ref|XP_003134808.2| PREDICTED: cortactin-binding protein 2-like [Sus scrofa].
Length = 1682
Score = 50.1 bits (118), Expect = 2e-06
Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 10/126 (7%)
Frame = +1
Query: 364 SAAEGDIARLTLILSHSPSLLNETSENGWTALMYAARNGHPDAVQFLLEKGCDRSIVNKS 543
+AA+G++ L+++L+ +N + E+G +AL AA+NGH D V+ LL + +K+
Sbjct: 740 AAAQGNVTLLSMLLNEEGLDINYSCEDGHSALYSAAKNGHTDCVRLLLNAEAQVNAADKN 799
Query: 544 RQTALDIAKFWGY--------KHIANLLANAKGGKKPWFLTSE--VEECENYFSRTLLDR 693
T L A G+ + AN+ A GG+ P +L + +EC DR
Sbjct: 800 GFTPLCAAAAQGHFKCVELLIAYDANINHAADGGQTPLYLACKNGNKECIKLLLEAKTDR 859
Query: 694 KSEKRN 711
+ R+
Sbjct: 860 SVKTRD 865
>ref|XP_003129757.2| PREDICTED: ankyrin repeat domain-containing protein 42-like [Sus
scrofa].
Length = 489
Score = 50.1 bits (118), Expect = 2e-06
Identities = 26/82 (31%), Positives = 44/82 (53%)
Frame = +1
Query: 358 HHSAAEGDIARLTLILSHSPSLLNETSENGWTALMYAARNGHPDAVQFLLEKGCDRSIVN 537
H +A +GD+ L ++ +NE NG T + AA GH + +Q+L++ G D +I N
Sbjct: 241 HVAAFKGDLEMLKKLIQDGVININERDNNGSTLMHKAAGQGHIECLQWLIKMGADSNITN 300
Query: 538 KSRQTALDIAKFWGYKHIANLL 603
K+ + D+AK + + LL
Sbjct: 301 KAGEKPSDVAKRFAHLAAVKLL 322
>ref|XP_003355510.1| PREDICTED: serine/threonine-protein phosphatase 6 regulatory
ankyrin repeat subunit C-like [Sus scrofa].
Length = 647
Score = 50.1 bits (118), Expect = 2e-06
Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Frame = +1
Query: 361 HSAAEGD-IARLTLILSHSPSLLNETSENGWTALMYAARNGHPDAVQFLLEKG-CDRSIV 534
H+AA D ++ L ++L H + N T G TALM AA NG AV+FLL +G D +++
Sbjct: 434 HAAAFADNVSGLRMLLQHQAEV-NATDHTGHTALMTAAENGQTAAVEFLLYRGKADLTVL 492
Query: 535 NKSRQTALDIAKFWGYKHIANLL 603
++++ TAL +A G++ A ++
Sbjct: 493 DENKNTALHLACSKGHEKCALMI 515
>ref|XP_003124970.2| PREDICTED: metal transporter CNNM3-like [Sus scrofa].
Length = 578
Score = 50.1 bits (118), Expect = 2e-06
Identities = 29/80 (36%), Positives = 42/80 (52%)
Frame = +1
Query: 364 SAAEGDIARLTLILSHSPSLLNETSENGWTALMYAARNGHPDAVQFLLEKGCDRSIVNKS 543
+A GD+ R+ ++ + ++ G+TAL YA+RNGH QFLLE G +
Sbjct: 433 AALNGDLGRVKYLIQKAADP-SQPDSAGYTALHYASRNGHYAVCQFLLESGAKCDAQTRG 491
Query: 544 RQTALDIAKFWGYKHIANLL 603
TAL A + G+ IA LL
Sbjct: 492 GATALHRASYCGHTDIARLL 511
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,285,381
Number of extensions: 567147
Number of successful extensions: 2192
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 2150
Number of HSP's successfully gapped: 16
Length of query: 350
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 250
Effective length of database: 8,854,232
Effective search space: 2213558000
Effective search space used: 2213558000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014214
(1050 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080773.1| peroxisomal NADH pyrophosphatase NUDT12 [Mus mu... 425 e-119
Alignment gi|XP_001481212.2| PREDICTED: hypothetical protein LOC75039 iso... 100 2e-21
Alignment gi|XP_003086124.1| PREDICTED: hypothetical protein LOC75039 iso... 100 2e-21
Alignment gi|NP_001020760.1| DNA-binding protein RFXANK isoform 2 [Mus mu... 60 3e-09
Alignment gi|NP_075961.1| ankyrin repeat family A protein 2 [Mus musculus]. 58 1e-08
Alignment gi|NP_665829.1| histone-lysine N-methyltransferase EHMT2 isofor... 57 2e-08
Alignment gi|NP_671493.1| histone-lysine N-methyltransferase EHMT2 isofor... 57 2e-08
Alignment gi|NP_082941.2| ankyrin repeat domain-containing protein 42 [Mu... 55 1e-07
Alignment gi|NP_080517.1| ankyrin repeat domain-containing protein 39 [Mu... 54 2e-07
Alignment gi|NP_076218.3| ankyrin repeat, SAM and basic leucine zipper do... 54 2e-07
>ref|NP_080773.1| peroxisomal NADH pyrophosphatase NUDT12 [Mus musculus].
Length = 462
Score = 425 bits (1093), Expect = e-119
Identities = 205/247 (82%), Positives = 225/247 (91%)
Frame = +1
Query: 310 MSFVKRSPNQEIISQFHHSAAEGDIARLTLILSHSPSLLNETSENGWTALMYAARNGHPD 489
MS VKR+P +E+IS+ H SAAEG++A+L ILSHSPSLLNETSENGWTALMYAARNGHPD
Sbjct: 1 MSSVKRNPKKEMISELHSSAAEGNVAKLAGILSHSPSLLNETSENGWTALMYAARNGHPD 60
Query: 490 AVQFLLEKGCDRSIVNKSRQTALDIAKFWGYKHIANLLANAKGGKKPWFLTSEVEECENY 669
VQFLLEKGCDRS+VNK+RQTALDIA FWGY+HIANLLANAKGGKKPWFLT+EV+ECENY
Sbjct: 61 VVQFLLEKGCDRSLVNKARQTALDIAAFWGYRHIANLLANAKGGKKPWFLTNEVDECENY 120
Query: 670 FSRTLLDRKSEKRNNSNWLLAKESHPATVYILFSDLNPLVTLGGNKESFQQPEVRLCQLN 849
FSRTLLDR+S+KRNNS+WL AKESHP TVY+LFSDLNPLVTLGGNKES QQPEVRLCQLN
Sbjct: 121 FSRTLLDRRSDKRNNSDWLQAKESHPTTVYLLFSDLNPLVTLGGNKESSQQPEVRLCQLN 180
Query: 850 YTDIKDYLAQPEKITLIFLGVELEMRKELFNYAGEISREEEDGLVAWFALGIDPVAAEEF 1029
Y D+K YLAQPEKITL+FLGVELEMRK AG + EEEDGLVAWFALGI+P AAEEF
Sbjct: 181 YPDVKGYLAQPEKITLVFLGVELEMRKGSPAQAGGVPEEEEDGLVAWFALGIEPGAAEEF 240
Query: 1030 KQRHENC 1050
KQRHENC
Sbjct: 241 KQRHENC 247
>ref|XP_001481212.2| PREDICTED: hypothetical protein LOC75039 isoform 1 [Mus musculus].
Length = 124
Score = 100 bits (248), Expect = 2e-21
Identities = 52/69 (75%), Positives = 55/69 (79%)
Frame = -2
Query: 503 RNWTASGCPFLAAYIKAVHPFSEVSLRRDGE*LSINVNLAISPSAAEW*NWEIISWFGLL 324
RNWT SGCPFLAAYIKAVHPFSEVSLRRDGE LSI N A PSAAE + EIIS+ G L
Sbjct: 52 RNWTTSGCPFLAAYIKAVHPFSEVSLRRDGEWLSIPANFATFPSAAELWSSEIISFLGFL 111
Query: 323 FTKDISSSK 297
T+DISS K
Sbjct: 112 LTEDISSFK 120
>ref|XP_003086124.1| PREDICTED: hypothetical protein LOC75039 isoform 1 [Mus musculus].
Length = 124
Score = 100 bits (248), Expect = 2e-21
Identities = 52/69 (75%), Positives = 55/69 (79%)
Frame = -2
Query: 503 RNWTASGCPFLAAYIKAVHPFSEVSLRRDGE*LSINVNLAISPSAAEW*NWEIISWFGLL 324
RNWT SGCPFLAAYIKAVHPFSEVSLRRDGE LSI N A PSAAE + EIIS+ G L
Sbjct: 52 RNWTTSGCPFLAAYIKAVHPFSEVSLRRDGEWLSIPANFATFPSAAELWSSEIISFLGFL 111
Query: 323 FTKDISSSK 297
T+DISS K
Sbjct: 112 LTEDISSFK 120
>ref|NP_001020760.1| DNA-binding protein RFXANK isoform 2 [Mus musculus].
Length = 259
Score = 60.1 bits (144), Expect = 3e-09
Identities = 31/82 (37%), Positives = 50/82 (60%)
Frame = +1
Query: 358 HHSAAEGDIARLTLILSHSPSLLNETSENGWTALMYAARNGHPDAVQFLLEKGCDRSIVN 537
H AA+G++++L L +L+N+ E G+T L++A+ G + V+FLL+ G D I+
Sbjct: 94 HQLAAQGELSQLKDHLRKGNNLINKPDERGFTPLIWASAFGEIETVRFLLDWGADPHILA 153
Query: 538 KSRQTALDIAKFWGYKHIANLL 603
K R++AL +A GY I LL
Sbjct: 154 KERESALSLASMGGYTDIVRLL 175
>ref|NP_075961.1| ankyrin repeat family A protein 2 [Mus musculus].
Length = 312
Score = 57.8 bits (138), Expect = 1e-08
Identities = 30/82 (36%), Positives = 48/82 (58%)
Frame = +1
Query: 358 HHSAAEGDIARLTLILSHSPSLLNETSENGWTALMYAARNGHPDAVQFLLEKGCDRSIVN 537
H AA+G++ L + +++N T E G+T LM+AA +G V+FLL+ G D ++
Sbjct: 153 HQLAAQGEMLYLATRIEQE-NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 211
Query: 538 KSRQTALDIAKFWGYKHIANLL 603
K R++AL +A GY I +L
Sbjct: 212 KGRESALSLACSKGYTDIVKML 233
>ref|NP_665829.1| histone-lysine N-methyltransferase EHMT2 isoform G9a long [Mus
musculus].
Length = 1263
Score = 57.4 bits (137), Expect = 2e-08
Identities = 28/86 (32%), Positives = 47/86 (54%)
Frame = +1
Query: 358 HHSAAEGDIARLTLILSHSPSLLNETSENGWTALMYAARNGHPDAVQFLLEKGCDRSIVN 537
HH+A G++ ++L+LS +N GWT +++AA + H D ++ LL +G D ++ +
Sbjct: 809 HHAAKIGNLEMVSLLLSTGQVDVNAQDSGGWTPIIWAAEHKHIDVIRMLLTRGADVTLTD 868
Query: 538 KSRQTALDIAKFWGYKHIANLLANAK 615
L A F G IA +L NA+
Sbjct: 869 NEENICLHWASFTGSAAIAEVLLNAQ 894
>ref|NP_671493.1| histone-lysine N-methyltransferase EHMT2 isoform G9a short [Mus
musculus].
Length = 1172
Score = 57.4 bits (137), Expect = 2e-08
Identities = 28/86 (32%), Positives = 47/86 (54%)
Frame = +1
Query: 358 HHSAAEGDIARLTLILSHSPSLLNETSENGWTALMYAARNGHPDAVQFLLEKGCDRSIVN 537
HH+A G++ ++L+LS +N GWT +++AA + H D ++ LL +G D ++ +
Sbjct: 718 HHAAKIGNLEMVSLLLSTGQVDVNAQDSGGWTPIIWAAEHKHIDVIRMLLTRGADVTLTD 777
Query: 538 KSRQTALDIAKFWGYKHIANLLANAK 615
L A F G IA +L NA+
Sbjct: 778 NEENICLHWASFTGSAAIAEVLLNAQ 803
>ref|NP_082941.2| ankyrin repeat domain-containing protein 42 [Mus musculus].
Length = 516
Score = 54.7 bits (130), Expect = 1e-07
Identities = 29/82 (35%), Positives = 46/82 (56%)
Frame = +1
Query: 358 HHSAAEGDIARLTLILSHSPSLLNETSENGWTALMYAARNGHPDAVQFLLEKGCDRSIVN 537
H +A +GD+ L ++ LNE +NG T + AA GH D +Q+L+E G + +I N
Sbjct: 269 HVAAFKGDLEVLKKLIGDGVINLNERDDNGSTPMHKAAGQGHIDCLQWLIEMGAESNITN 328
Query: 538 KSRQTALDIAKFWGYKHIANLL 603
K+ +T D+AK + + LL
Sbjct: 329 KAGETPSDVAKRFAHLAAVKLL 350
>ref|NP_080517.1| ankyrin repeat domain-containing protein 39 [Mus musculus].
Length = 183
Score = 53.9 bits (128), Expect = 2e-07
Identities = 39/129 (30%), Positives = 58/129 (44%)
Frame = +1
Query: 364 SAAEGDIARLTLILSHSPSLLNETSENGWTALMYAARNGHPDAVQFLLEKGCDRSIVNKS 543
+A GD+ R+ + + ++ G+TAL YA+RNGH QFLLE G
Sbjct: 38 AALNGDLGRVKYFIQKATDP-SQPDSAGYTALHYASRNGHYAVCQFLLESGAKCDAQTHG 96
Query: 544 RQTALDIAKFWGYKHIANLLANAKGGKKPWFLTSEVEECENYFSRTLLDRKSEKRNNSNW 723
TAL A + G+ IA LL + G PW + ++ T L + +EK +
Sbjct: 97 GATALHRASYCGHTEIARLLLS--HGSNPWLVDND--------GMTSLHKAAEKGHEDIC 146
Query: 724 LLAKESHPA 750
L + PA
Sbjct: 147 SLLLQHSPA 155
>ref|NP_076218.3| ankyrin repeat, SAM and basic leucine zipper domain-containing
protein 1 [Mus musculus].
Length = 475
Score = 53.9 bits (128), Expect = 2e-07
Identities = 61/229 (26%), Positives = 102/229 (44%), Gaps = 3/229 (1%)
Frame = +1
Query: 337 QEIISQFHHSAAEGDIARLTLILSHSPSLLNETSENGWTALMYAARNGHPDAVQFLLEKG 516
+ +++ ++A +G + L+++H + N ENG+TAL +AAR GH + + LLE G
Sbjct: 147 RRLMTPIMYAARDGHTQVVALLVAHGAEV-NAQDENGYTALTWAARQGHKNVILKLLELG 205
Query: 517 CDRSIVNKSRQTALDIAKFWGYKHIANLLA---NAKGGKKPWFLTSEVEECENYFSRTLL 687
++ + K +T +IAK + I N L+ N GK LT E C+ LL
Sbjct: 206 ANKMLQTKDGRTPSEIAKRNKHLEIFNFLSLTLNPLEGKLQQ-LTKEETICK------LL 258
Query: 688 DRKSEKRNNSNWLLAKESHPATVYILFSDLNPLVTLGGNKESFQQPEVRLCQLNYTDIKD 867
S+K ++ H + Y F DL E+ L L + D
Sbjct: 259 ATDSDK---------EKDHIFSPYTAFGDL----------------EIFLHGLGLEHMTD 293
Query: 868 YLAQPEKITLIFLGVELEMRKELFNYAGEISREEEDGLVAWFALGIDPV 1014
L + + ITL L L M+K+ G S++++ L A L ++ +
Sbjct: 294 SLKEKD-ITLRHL---LTMKKDELTKNGIASKDQQKILAALKELEVEEI 338
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,732,026
Number of extensions: 767187
Number of successful extensions: 3019
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 2959
Number of HSP's successfully gapped: 20
Length of query: 350
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 248
Effective length of database: 12,553,887
Effective search space: 3113363976
Effective search space used: 3113363976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014214
(1050 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_113626.1| peroxisomal NADH pyrophosphatase NUDT12 [Homo s... 458 e-129
Alignment gi|NP_003712.1| DNA-binding protein RFXANK isoform a [Homo sapi... 60 4e-09
Alignment gi|NP_075526.1| ankyrin repeat family A protein 2 [Homo sapiens]. 58 2e-08
Alignment gi|NP_079532.5| histone-lysine N-methyltransferase EHMT2 isofor... 56 5e-08
Alignment gi|NP_006700.3| histone-lysine N-methyltransferase EHMT2 isofor... 56 5e-08
Alignment gi|NP_570124.1| ankyrin repeat, SAM and basic leucine zipper do... 55 1e-07
Alignment gi|NP_919438.1| krev interaction trapped protein 1 isoform 1 [H... 53 4e-07
Alignment gi|NP_919437.1| krev interaction trapped protein 1 isoform 1 [H... 53 4e-07
Alignment gi|NP_919436.1| krev interaction trapped protein 1 isoform 1 [H... 53 4e-07
Alignment gi|NP_004903.2| krev interaction trapped protein 1 isoform 1 [H... 53 4e-07
>ref|NP_113626.1| peroxisomal NADH pyrophosphatase NUDT12 [Homo sapiens].
Length = 462
Score = 458 bits (1178), Expect = e-129
Identities = 223/247 (90%), Positives = 236/247 (95%)
Frame = +1
Query: 310 MSFVKRSPNQEIISQFHHSAAEGDIARLTLILSHSPSLLNETSENGWTALMYAARNGHPD 489
MS VKRS QEI++QFH SAAEGDIA+LT ILSHSPSLLNETSENGWTALMYAARNGHP+
Sbjct: 1 MSSVKRSLKQEIVTQFHCSAAEGDIAKLTGILSHSPSLLNETSENGWTALMYAARNGHPE 60
Query: 490 AVQFLLEKGCDRSIVNKSRQTALDIAKFWGYKHIANLLANAKGGKKPWFLTSEVEECENY 669
VQFLLEKGCDRSIVNKSRQTALDIA FWGYKHIANLLA AKGGKKPWFLT+EVEECENY
Sbjct: 61 IVQFLLEKGCDRSIVNKSRQTALDIAVFWGYKHIANLLATAKGGKKPWFLTNEVEECENY 120
Query: 670 FSRTLLDRKSEKRNNSNWLLAKESHPATVYILFSDLNPLVTLGGNKESFQQPEVRLCQLN 849
FS+TLLDRKSEKRNNS+WLLAKESHPATV+ILFSDLNPLVTLGGNKESFQQPEVRLCQLN
Sbjct: 121 FSKTLLDRKSEKRNNSDWLLAKESHPATVFILFSDLNPLVTLGGNKESFQQPEVRLCQLN 180
Query: 850 YTDIKDYLAQPEKITLIFLGVELEMRKELFNYAGEISREEEDGLVAWFALGIDPVAAEEF 1029
YTDIKDYLAQPEKITLIFLGVELE++ +L NYAGE+ REEEDGLVAWFALGIDP+AAEEF
Sbjct: 181 YTDIKDYLAQPEKITLIFLGVELEIKDKLLNYAGEVPREEEDGLVAWFALGIDPIAAEEF 240
Query: 1030 KQRHENC 1050
KQRHENC
Sbjct: 241 KQRHENC 247
>ref|NP_003712.1| DNA-binding protein RFXANK isoform a [Homo sapiens].
Length = 260
Score = 59.7 bits (143), Expect = 4e-09
Identities = 32/82 (39%), Positives = 49/82 (59%)
Frame = +1
Query: 358 HHSAAEGDIARLTLILSHSPSLLNETSENGWTALMYAARNGHPDAVQFLLEKGCDRSIVN 537
H AA+G++ +L L +L+N+ E G+T L++A+ G + V+FLLE G D I+
Sbjct: 95 HQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILA 154
Query: 538 KSRQTALDIAKFWGYKHIANLL 603
K R++AL +A GY I LL
Sbjct: 155 KERESALSLASTGGYTDIVGLL 176
>ref|NP_075526.1| ankyrin repeat family A protein 2 [Homo sapiens].
Length = 313
Score = 57.8 bits (138), Expect = 2e-08
Identities = 30/82 (36%), Positives = 48/82 (58%)
Frame = +1
Query: 358 HHSAAEGDIARLTLILSHSPSLLNETSENGWTALMYAARNGHPDAVQFLLEKGCDRSIVN 537
H AA+G++ L + +++N T E G+T LM+AA +G V+FLL+ G D ++
Sbjct: 154 HQLAAQGEMLYLATRIEQE-NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 212
Query: 538 KSRQTALDIAKFWGYKHIANLL 603
K R++AL +A GY I +L
Sbjct: 213 KGRESALSLACSKGYTDIVKML 234
>ref|NP_079532.5| histone-lysine N-methyltransferase EHMT2 isoform b [Homo sapiens].
Length = 1176
Score = 56.2 bits (134), Expect = 5e-08
Identities = 27/86 (31%), Positives = 47/86 (54%)
Frame = +1
Query: 358 HHSAAEGDIARLTLILSHSPSLLNETSENGWTALMYAARNGHPDAVQFLLEKGCDRSIVN 537
HH+A G++ ++L+LS +N GWT +++AA + H + ++ LL +G D ++ +
Sbjct: 722 HHAAKIGNLEMVSLLLSTGQVDVNAQDSGGWTPIIWAAEHKHIEVIRMLLTRGADVTLTD 781
Query: 538 KSRQTALDIAKFWGYKHIANLLANAK 615
L A F G IA +L NA+
Sbjct: 782 NEENICLHWASFTGSAAIAEVLLNAR 807
>ref|NP_006700.3| histone-lysine N-methyltransferase EHMT2 isoform a [Homo sapiens].
Length = 1210
Score = 56.2 bits (134), Expect = 5e-08
Identities = 27/86 (31%), Positives = 47/86 (54%)
Frame = +1
Query: 358 HHSAAEGDIARLTLILSHSPSLLNETSENGWTALMYAARNGHPDAVQFLLEKGCDRSIVN 537
HH+A G++ ++L+LS +N GWT +++AA + H + ++ LL +G D ++ +
Sbjct: 756 HHAAKIGNLEMVSLLLSTGQVDVNAQDSGGWTPIIWAAEHKHIEVIRMLLTRGADVTLTD 815
Query: 538 KSRQTALDIAKFWGYKHIANLLANAK 615
L A F G IA +L NA+
Sbjct: 816 NEENICLHWASFTGSAAIAEVLLNAR 841
>ref|NP_570124.1| ankyrin repeat, SAM and basic leucine zipper domain-containing
protein 1 [Homo sapiens].
Length = 475
Score = 54.7 bits (130), Expect = 1e-07
Identities = 63/236 (26%), Positives = 105/236 (44%), Gaps = 3/236 (1%)
Frame = +1
Query: 337 QEIISQFHHSAAEGDIARLTLILSHSPSLLNETSENGWTALMYAARNGHPDAVQFLLEKG 516
+ +++ ++A +G + L+++H + N ENG+TAL +AAR GH + V LLE G
Sbjct: 147 RRLMTPIMYAARDGHTQVVALLVAHGAEV-NTQDENGYTALTWAARQGHKNIVLKLLELG 205
Query: 517 CDRSIVNKSRQTALDIAKFWGYKHIANLLA---NAKGGKKPWFLTSEVEECENYFSRTLL 687
++ + K + +IAK + I NLL+ N GK LT E C+ +L
Sbjct: 206 ANKMLQTKDGKMPSEIAKRNKHHEIFNLLSFTLNPLEGKLQQ-LTKEDTICK------IL 258
Query: 688 DRKSEKRNNSNWLLAKESHPATVYILFSDLNPLVTLGGNKESFQQPEVRLCQLNYTDIKD 867
S++ ++ H + Y F DL EV L L + D
Sbjct: 259 TTDSDR---------EKDHIFSSYTAFGDL----------------EVFLHGLGLEHMTD 293
Query: 868 YLAQPEKITLIFLGVELEMRKELFNYAGEISREEEDGLVAWFALGIDPVAAEEFKQ 1035
L + + ITL L L MR++ F G S++++ L A L ++ + E +
Sbjct: 294 LLKERD-ITLRHL---LTMREDEFTKNGITSKDQQKILAALKELQVEEIQFGELSE 345
>ref|NP_919438.1| krev interaction trapped protein 1 isoform 1 [Homo sapiens].
Length = 736
Score = 53.1 bits (126), Expect = 4e-07
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Frame = +1
Query: 271 WRRSRSCAVFEEEMSFVKRSPNQEIISQFHHSAAEGDIARLTLILSHSPSLLNETSENGW 450
W+RS S ++E +V P H SA EGD L+ +LS S +N+ + W
Sbjct: 271 WQRSMSSVTEDKERQWVDDFP-------LHRSACEGDSELLSRLLSERFS-VNQLDSDHW 322
Query: 451 TALMYAARNGHPDAVQFLLEKG-CDRSIVNKSRQTALDIAKFWGYKHIANLLAN 609
+ YA G +A + LLEKG C+ +++N + L A G+ I +L N
Sbjct: 323 APIHYACWYGKVEATRILLEKGKCNPNLLNGQLSSPLHFAAGGGHAEIVQILLN 376
>ref|NP_919437.1| krev interaction trapped protein 1 isoform 1 [Homo sapiens].
Length = 736
Score = 53.1 bits (126), Expect = 4e-07
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Frame = +1
Query: 271 WRRSRSCAVFEEEMSFVKRSPNQEIISQFHHSAAEGDIARLTLILSHSPSLLNETSENGW 450
W+RS S ++E +V P H SA EGD L+ +LS S +N+ + W
Sbjct: 271 WQRSMSSVTEDKERQWVDDFP-------LHRSACEGDSELLSRLLSERFS-VNQLDSDHW 322
Query: 451 TALMYAARNGHPDAVQFLLEKG-CDRSIVNKSRQTALDIAKFWGYKHIANLLAN 609
+ YA G +A + LLEKG C+ +++N + L A G+ I +L N
Sbjct: 323 APIHYACWYGKVEATRILLEKGKCNPNLLNGQLSSPLHFAAGGGHAEIVQILLN 376
>ref|NP_919436.1| krev interaction trapped protein 1 isoform 1 [Homo sapiens].
Length = 736
Score = 53.1 bits (126), Expect = 4e-07
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Frame = +1
Query: 271 WRRSRSCAVFEEEMSFVKRSPNQEIISQFHHSAAEGDIARLTLILSHSPSLLNETSENGW 450
W+RS S ++E +V P H SA EGD L+ +LS S +N+ + W
Sbjct: 271 WQRSMSSVTEDKERQWVDDFP-------LHRSACEGDSELLSRLLSERFS-VNQLDSDHW 322
Query: 451 TALMYAARNGHPDAVQFLLEKG-CDRSIVNKSRQTALDIAKFWGYKHIANLLAN 609
+ YA G +A + LLEKG C+ +++N + L A G+ I +L N
Sbjct: 323 APIHYACWYGKVEATRILLEKGKCNPNLLNGQLSSPLHFAAGGGHAEIVQILLN 376
>ref|NP_004903.2| krev interaction trapped protein 1 isoform 1 [Homo sapiens].
Length = 736
Score = 53.1 bits (126), Expect = 4e-07
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Frame = +1
Query: 271 WRRSRSCAVFEEEMSFVKRSPNQEIISQFHHSAAEGDIARLTLILSHSPSLLNETSENGW 450
W+RS S ++E +V P H SA EGD L+ +LS S +N+ + W
Sbjct: 271 WQRSMSSVTEDKERQWVDDFP-------LHRSACEGDSELLSRLLSERFS-VNQLDSDHW 322
Query: 451 TALMYAARNGHPDAVQFLLEKG-CDRSIVNKSRQTALDIAKFWGYKHIANLLAN 609
+ YA G +A + LLEKG C+ +++N + L A G+ I +L N
Sbjct: 323 APIHYACWYGKVEATRILLEKGKCNPNLLNGQLSSPLHFAAGGGHAEIVQILLN 376
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,172,098
Number of extensions: 904133
Number of successful extensions: 3834
Number of sequences better than 1.0e-05: 29
Number of HSP's gapped: 3760
Number of HSP's successfully gapped: 29
Length of query: 350
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 247
Effective length of database: 14,901,872
Effective search space: 3680762384
Effective search space used: 3680762384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014214
(1050 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 1063 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 1063 bits (536), Expect = 0.0
Identities = 536/536 (100%)
Strand = Plus / Minus
Query: 515 ggtgtgacagatcgattgtaaataaatcaagacagactgcactggatattgctaaatttt 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113212591 ggtgtgacagatcgattgtaaataaatcaagacagactgcactggatattgctaaatttt 113212532
Query: 575 ggggttataagcatatagctaacttactagctaatgctaaaggtgggaagaagccttggt 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113212531 ggggttataagcatatagctaacttactagctaatgctaaaggtgggaagaagccttggt 113212472
Query: 635 tcctaaccagtgaagtggaagaatgtgaaaattattttagcaggacactactagaccgga 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113212471 tcctaaccagtgaagtggaagaatgtgaaaattattttagcaggacactactagaccgga 113212412
Query: 695 aaagtgaaaaaagaaataattctaactggttattagcaaaagaaagccatccagccacag 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113212411 aaagtgaaaaaagaaataattctaactggttattagcaaaagaaagccatccagccacag 113212352
Query: 755 tttatatccttttctcagatttaaatcccttggttactctaggtggcaataaagaaagtt 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113212351 tttatatccttttctcagatttaaatcccttggttactctaggtggcaataaagaaagtt 113212292
Query: 815 tccaacagccagaagtcaggctttgtcagctcaactacacggatataaaggattatttgg 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113212291 tccaacagccagaagtcaggctttgtcagctcaactacacggatataaaggattatttgg 113212232
Query: 875 ctcagcctgagaagatcaccttgattttccttggagtagaactcgaaatgagaaaagagt 934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113212231 ctcagcctgagaagatcaccttgattttccttggagtagaactcgaaatgagaaaagagt 113212172
Query: 935 tatttaattatgctggggaaatctcaagagaagaagaagatgggttggttgcctggtttg 994
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113212171 tatttaattatgctggggaaatctcaagagaagaagaagatgggttggttgcctggtttg 113212112
Query: 995 ctttaggtatagatcctgttgctgctgaagaatttaagcaaagacatgaaaattgt 1050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113212111 ctttaggtatagatcctgttgctgctgaagaatttaagcaaagacatgaaaattgt 113212056
Score = 553 bits (279), Expect = e-155
Identities = 296/304 (97%)
Strand = Plus / Minus
Query: 1 gctccgtccggcgccagggagagtgagtgtgtattttcccggtctttcgactacatcaag 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113216170 gctccatccggcgccagggagagtgagtgtgtattttcccggtctttcgactacatcaag 113216111
Query: 61 nnnnnnnctaccctggtcgcatttgggttagtaacagcttcggcgagttagccacttcca 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113216110 tttttttctaccctggtcgcatttgggttagtaacagcttcggcgagttagccacttcca 113216051
Query: 121 gtgccccttccggagccggtaaccagttccccggtgcgcttggatctccgcgctgtctgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113216050 gtgccccttccggagccggtaaccagttccccggtgcgcttggatctccgcgctgtctgg 113215991
Query: 181 ccggctctgctggatggtgtggcgcagccgcgcgctggggtgcgggtgcaggcgccacgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113215990 ccggctctgctggatggtgtggcgcagccgcgcgctggggtgcgggtgcaggcgccacgg 113215931
Query: 241 actttgcagcccaggctcacaggaggcggctggagacgcagccgatcctgcgcagtcttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113215930 actttgcagcccaggctcacaggaggcggctggagacgcagccgatcctgcgcagtcttt 113215871
Query: 301 gagg 304
||||
Sbjct: 113215870 gagg 113215867
Score = 428 bits (216), Expect = e-117
Identities = 216/216 (100%)
Strand = Plus / Minus
Query: 302 aggaagaaatgtcttttgtaaaaaggagtccaaaccaagaaataatttcccaatttcacc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113213328 aggaagaaatgtcttttgtaaaaaggagtccaaaccaagaaataatttcccaatttcacc 113213269
Query: 362 attcagcagcagaaggggatattgccagattaacattaatactcagtcattctccatctc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113213268 attcagcagcagaaggggatattgccagattaacattaatactcagtcattctccatctc 113213209
Query: 422 ttctcaatgaaacttctgaaaatggatggactgctttaatgtatgctgcaaggaatgggc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113213208 ttctcaatgaaacttctgaaaatggatggactgctttaatgtatgctgcaaggaatgggc 113213149
Query: 482 acccagatgctgtccaatttctactcgagaaagggt 517
||||||||||||||||||||||||||||||||||||
Sbjct: 113213148 acccagatgctgtccaatttctactcgagaaagggt 113213113
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,746,108
Number of extensions: 268
Number of successful extensions: 268
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 267
Number of HSP's successfully gapped: 3
Length of query: 1050
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1029
Effective length of database: 2,808,413,156
Effective search space: 2889857137524
Effective search space used: 2889857137524
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)