Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014215
(641 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001071329.1| HIG1 domain family member 2A [Bos taurus]. 199 1e-51
Alignment gi|XP_002697742.1| PREDICTED: HIG1 domain family, member 1D-lik... 61 9e-10
Alignment gi|XP_001249479.2| PREDICTED: HIG1 domain family, member 1D-lik... 61 9e-10
Alignment gi|NP_001070582.1| HIG1 domain family, member 1D [Bos taurus]. 56 3e-08
Alignment gi|XP_002691415.1| PREDICTED: HIG1 domain family, member 1D-lik... 56 3e-08
Alignment gi|XP_002700851.1| PREDICTED: HIG1 domain family, member 1D-lik... 56 3e-08
Alignment gi|XP_002700543.1| PREDICTED: HIG1 domain family, member 1D-lik... 56 3e-08
Alignment gi|XP_002699992.1| PREDICTED: HIG1 domain family, member 1D-lik... 55 4e-08
Alignment gi|XP_001250221.2| PREDICTED: HIG1 domain family, member 1D-lik... 55 4e-08
Alignment gi|XP_002690186.1| PREDICTED: HIG1 domain family, member 1D-lik... 55 6e-08
>ref|NP_001071329.1| HIG1 domain family member 2A [Bos taurus].
Length = 106
Score = 199 bits (507), Expect = 1e-51
Identities = 97/106 (91%), Positives = 102/106 (96%)
Frame = +2
Query: 38 MATPGPATPEAPFEPSHPPVIEGFSPTVYSTSESFKEKFIRKTRENPMVPIGCLGTASAL 217
M TPG TPEAPFEPS PPVIEGFSP+VYSTSESFKEKFIRKTRENP+VPIGCLGTA+AL
Sbjct: 1 METPGRVTPEAPFEPSQPPVIEGFSPSVYSTSESFKEKFIRKTRENPLVPIGCLGTAAAL 60
Query: 218 TYGLYCFHRGQSQRSQLMMRTRIAAQGFTIVAILVGLAASTVRSRP 355
TYGLYCFHRGQSQRSQLMMRTRIAAQGFTIVAILVGLAAST++SRP
Sbjct: 61 TYGLYCFHRGQSQRSQLMMRTRIAAQGFTIVAILVGLAASTLKSRP 106
>ref|XP_002697742.1| PREDICTED: HIG1 domain family, member 1D-like [Bos taurus].
Length = 220
Score = 60.8 bits (146), Expect = 9e-10
Identities = 40/107 (37%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Frame = +2
Query: 23 AVAQNMATPGPATPEA-PFEPSHPPVIEGFSPTVYSTSESFKEKFIRKTRENPMVPIGCL 199
AV Q P P PE P S + ++ S E K IRK RE P VPIG
Sbjct: 103 AVQQFQVGPEPEAPEQLPCNESSITMSSDTDISLSSYDEDQGSKLIRKAREAPFVPIGMA 162
Query: 200 GTASALTYGLYCF-HRGQSQRSQLMMRTRIAAQGFTIVAILVGLAAS 337
G A+ + YGLY RG ++ S ++ R+AAQGF + A+ +G+ S
Sbjct: 163 GFAAIVAYGLYRLKSRGHTKMSVHLIHMRVAAQGFVVGAMTLGMGYS 209
>ref|XP_001249479.2| PREDICTED: HIG1 domain family, member 1D-like [Bos taurus].
Length = 220
Score = 60.8 bits (146), Expect = 9e-10
Identities = 40/107 (37%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Frame = +2
Query: 23 AVAQNMATPGPATPEA-PFEPSHPPVIEGFSPTVYSTSESFKEKFIRKTRENPMVPIGCL 199
AV Q P P PE P S + ++ S E K IRK RE P VPIG
Sbjct: 103 AVQQFQVGPEPEAPEQLPCNESSITMSSDTDISLSSYDEDQGSKLIRKAREAPFVPIGMA 162
Query: 200 GTASALTYGLYCF-HRGQSQRSQLMMRTRIAAQGFTIVAILVGLAAS 337
G A+ + YGLY RG ++ S ++ R+AAQGF + A+ +G+ S
Sbjct: 163 GFAAIVAYGLYRLKSRGHTKMSVHLIHMRVAAQGFVVGAMTLGMGYS 209
>ref|NP_001070582.1| HIG1 domain family, member 1D [Bos taurus].
Length = 93
Score = 55.8 bits (133), Expect = 3e-08
Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +2
Query: 125 STSESFKEKFIRKTRENPMVPIGCLGTASALTYGLYCF-HRGQSQRSQLMMRTRIAAQGF 301
S E K IRK RE P VPIG G A+ + YGLY RG ++ S ++ R+AAQGF
Sbjct: 11 SYDEDQGSKLIRKAREAPFVPIGMAGFAAIVAYGLYRLKSRGHTKMSVHLIHMRVAAQGF 70
Query: 302 TIVAILVGLAAS 337
+ A+ +G+ S
Sbjct: 71 VVGAMTLGMGYS 82
>ref|XP_002691415.1| PREDICTED: HIG1 domain family, member 1D-like [Bos taurus].
Length = 93
Score = 55.8 bits (133), Expect = 3e-08
Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +2
Query: 125 STSESFKEKFIRKTRENPMVPIGCLGTASALTYGLYCF-HRGQSQRSQLMMRTRIAAQGF 301
S E K IRK RE P VPIG G A+ + YGLY RG ++ S ++ R+AAQGF
Sbjct: 11 SYDEDQGSKLIRKAREAPFVPIGMAGFAAIVAYGLYRLKSRGHTKMSVHLIHMRVAAQGF 70
Query: 302 TIVAILVGLAAS 337
+ A+ +G+ S
Sbjct: 71 VVGAMTLGMGYS 82
>ref|XP_002700851.1| PREDICTED: HIG1 domain family, member 1D-like [Bos taurus].
Length = 93
Score = 55.8 bits (133), Expect = 3e-08
Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +2
Query: 125 STSESFKEKFIRKTRENPMVPIGCLGTASALTYGLYCF-HRGQSQRSQLMMRTRIAAQGF 301
S E K IRK RE P VPIG G A+ + YGLY RG ++ S ++ R+AAQGF
Sbjct: 11 SYDEDQGSKLIRKAREAPFVPIGMAGFAAIVAYGLYRLKSRGHTKMSVHLIHMRVAAQGF 70
Query: 302 TIVAILVGLAAS 337
+ A+ +G+ S
Sbjct: 71 VVGAMTLGMGYS 82
>ref|XP_002700543.1| PREDICTED: HIG1 domain family, member 1D-like [Bos taurus].
Length = 93
Score = 55.8 bits (133), Expect = 3e-08
Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +2
Query: 125 STSESFKEKFIRKTRENPMVPIGCLGTASALTYGLYCF-HRGQSQRSQLMMRTRIAAQGF 301
S E K IRK RE P VPIG G A+ + YGLY RG ++ S ++ R+AAQGF
Sbjct: 11 SYDEDQGSKLIRKAREAPFVPIGMAGFAAIVAYGLYRLKSRGHTKMSVHLIHMRVAAQGF 70
Query: 302 TIVAILVGLAAS 337
+ A+ +G+ S
Sbjct: 71 VVGAMTLGMGYS 82
>ref|XP_002699992.1| PREDICTED: HIG1 domain family, member 1D-like [Bos taurus].
Length = 144
Score = 55.5 bits (132), Expect = 4e-08
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +2
Query: 125 STSESFKEKFIRKTRENPMVPIGCLGTASALTYGLYCF-HRGQSQRSQLMMRTRIAAQGF 301
S E K IRK RE P VP+G G A+ + YGLY RG ++ S ++ R+AAQGF
Sbjct: 11 SYDEDQGSKLIRKAREAPFVPVGMAGFAAIVAYGLYRLKSRGHTKMSVHLIHMRVAAQGF 70
Query: 302 TIVAILVGLAAS 337
+ A+ +G+ S
Sbjct: 71 VVGAMTLGMGYS 82
>ref|XP_001250221.2| PREDICTED: HIG1 domain family, member 1D-like [Bos taurus].
Length = 115
Score = 55.5 bits (132), Expect = 4e-08
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +2
Query: 125 STSESFKEKFIRKTRENPMVPIGCLGTASALTYGLYCF-HRGQSQRSQLMMRTRIAAQGF 301
S E K IRK RE P VP+G G A+ + YGLY RG ++ S ++ R+AAQGF
Sbjct: 33 SYDEDQGSKLIRKAREAPFVPVGMAGFAAIVAYGLYRLKSRGHTKMSVHLIHMRVAAQGF 92
Query: 302 TIVAILVGLAAS 337
+ A+ +G+ S
Sbjct: 93 VVGAMTLGMGYS 104
>ref|XP_002690186.1| PREDICTED: HIG1 domain family, member 1D-like [Bos taurus].
Length = 93
Score = 54.7 bits (130), Expect = 6e-08
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Frame = +2
Query: 116 TVYSTSESFKEKFIRKTRENPMVPIGCLGTASALTYGLYCF-HRGQSQRSQLMMRTRIAA 292
++YS E K IRK RE P VP+G A+ + YGLY RG ++ S ++ R+AA
Sbjct: 8 SLYSYDEDQGSKLIRKAREAPFVPMGMACFAAIVAYGLYRLKSRGHTKMSVHLIHMRVAA 67
Query: 293 QGFTIVAILVGLAAS 337
QGF + A+ +G+ S
Sbjct: 68 QGFVVGAMTLGMGYS 82
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 24,844,410
Number of extensions: 688251
Number of successful extensions: 3167
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 3140
Number of HSP's successfully gapped: 21
Length of query: 213
Length of database: 17,681,374
Length adjustment: 98
Effective length of query: 115
Effective length of database: 14,438,750
Effective search space: 1660456250
Effective search space used: 1660456250
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Animal-Genome cDNA 20110601C-014215
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014215
(641 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536423.1| PREDICTED: similar to CG9921-PA isoform 1 [Cani... 186 2e-47
Alignment gi|XP_853697.1| PREDICTED: similar to 60S ribosomal protein L21... 174 6e-44
Alignment gi|XP_866147.1| PREDICTED: hypothetical protein XP_861054 isofo... 93 2e-19
Alignment gi|XP_861494.1| PREDICTED: similar to hypoxia induced gene 1 is... 57 2e-08
Alignment gi|XP_534235.1| PREDICTED: similar to hypoxia induced gene 1 is... 57 2e-08
Alignment gi|XP_537615.1| PREDICTED: similar to CLST 11240 protein [Canis... 54 2e-07
Alignment gi|XP_543670.2| PREDICTED: similar to UbiE-YGHL1 fusion protein... 50 2e-06
>ref|XP_536423.1| PREDICTED: similar to CG9921-PA isoform 1 [Canis familiaris].
Length = 106
Score = 186 bits (472), Expect = 2e-47
Identities = 87/105 (82%), Positives = 96/105 (91%)
Frame = +2
Query: 38 MATPGPATPEAPFEPSHPPVIEGFSPTVYSTSESFKEKFIRKTRENPMVPIGCLGTASAL 217
MA PGP TP APFEPS PPVIEGFSP++YS ESFKEKF+RKTRENPMVP+GCLGTA+AL
Sbjct: 1 MAAPGPVTPGAPFEPSQPPVIEGFSPSIYSPPESFKEKFLRKTRENPMVPVGCLGTAAAL 60
Query: 218 TYGLYCFHRGQSQRSQLMMRTRIAAQGFTIVAILVGLAASTVRSR 352
TYGLYCFHRGQS RSQLMMRTRIAAQGFT+ AIL+GLAAS ++SR
Sbjct: 61 TYGLYCFHRGQSHRSQLMMRTRIAAQGFTVAAILLGLAASAMKSR 105
>ref|XP_853697.1| PREDICTED: similar to 60S ribosomal protein L21 [Canis familiaris].
Length = 160
Score = 174 bits (441), Expect = 6e-44
Identities = 83/104 (79%), Positives = 92/104 (88%)
Frame = +2
Query: 41 ATPGPATPEAPFEPSHPPVIEGFSPTVYSTSESFKEKFIRKTRENPMVPIGCLGTASALT 220
A PGP TP APFEPS PPVIEGFSP++ ST ESFKEKF+RKT ENPMV IGCLGTA+ALT
Sbjct: 56 AAPGPVTPGAPFEPSQPPVIEGFSPSICSTPESFKEKFLRKTHENPMVSIGCLGTAAALT 115
Query: 221 YGLYCFHRGQSQRSQLMMRTRIAAQGFTIVAILVGLAASTVRSR 352
YGLYCFH+GQS R QLMMRTRIAAQGFT+ AIL+ LAAST++SR
Sbjct: 116 YGLYCFHQGQSHRLQLMMRTRIAAQGFTVAAILLSLAASTMKSR 159
>ref|XP_866147.1| PREDICTED: hypothetical protein XP_861054 isoform 2 [Canis
familiaris].
Length = 53
Score = 93.2 bits (230), Expect = 2e-19
Identities = 41/51 (80%), Positives = 45/51 (88%)
Frame = +2
Query: 38 MATPGPATPEAPFEPSHPPVIEGFSPTVYSTSESFKEKFIRKTRENPMVPI 190
MA PGP TP APFEPS PPVIEGFSP++YS ESFKEKF+RKTRENPMVP+
Sbjct: 1 MAAPGPVTPGAPFEPSQPPVIEGFSPSIYSPPESFKEKFLRKTRENPMVPV 51
>ref|XP_861494.1| PREDICTED: similar to hypoxia induced gene 1 isoform 2 [Canis
familiaris].
Length = 93
Score = 56.6 bits (135), Expect = 2e-08
Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Frame = +2
Query: 104 GFSPTVYSTSESFKEKFIRKTRENPMVPIGCLGTASALTYGLYCF-HRGQSQRSQLMMRT 280
G ++ S E K IRK RE P VPIG G A+ + YGLY RG ++ S ++
Sbjct: 4 GTDVSLSSYDEDQGSKLIRKAREAPFVPIGMAGFAAIVAYGLYKLKSRGNTKMSVHLIHM 63
Query: 281 RIAAQGFTIVAILVGLAAS 337
R+AAQGF + A+ +G+ S
Sbjct: 64 RVAAQGFVVGAMTLGMGYS 82
>ref|XP_534235.1| PREDICTED: similar to hypoxia induced gene 1 isoform 1 [Canis
familiaris].
Length = 93
Score = 56.6 bits (135), Expect = 2e-08
Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Frame = +2
Query: 104 GFSPTVYSTSESFKEKFIRKTRENPMVPIGCLGTASALTYGLYCF-HRGQSQRSQLMMRT 280
G ++ S E K IRK RE P VPIG G A+ + YGLY RG ++ S ++
Sbjct: 4 GTDVSLSSYDEDQGSKLIRKAREAPFVPIGMAGFAAIVAYGLYKLKSRGNTKMSVHLIHM 63
Query: 281 RIAAQGFTIVAILVGLAAS 337
R+AAQGF + A+ +G+ S
Sbjct: 64 RVAAQGFVVGAMTLGMGYS 82
>ref|XP_537615.1| PREDICTED: similar to CLST 11240 protein [Canis familiaris].
Length = 117
Score = 53.5 bits (127), Expect = 2e-07
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +2
Query: 134 ESFKEKFIRKTRENPMVPIGCLGTASALTYGLYCFH-RGQSQRSQLMMRTRIAAQGFTIV 310
+S +KF+RKTRE+P+VPIG G + Y +Y RG ++ S ++ TR+AAQ +
Sbjct: 33 DSVSQKFLRKTRESPLVPIGLGGCLAVAVYRIYRLKARGSTKMSIHLIHTRVAAQACAVG 92
Query: 311 AILVGLAASTVR 346
A+++G + R
Sbjct: 93 AVMLGAVYTMYR 104
>ref|XP_543670.2| PREDICTED: similar to UbiE-YGHL1 fusion protein [Canis familiaris].
Length = 258
Score = 49.7 bits (117), Expect = 2e-06
Identities = 22/60 (36%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Frame = +2
Query: 149 KFIRKTRENPMVPIGCLGTASALTYGLYCFHRGQSQRSQL-MMRTRIAAQGFTIVAILVG 325
+ IRK+R++P VP+G G + ++YGLY + Q+ + ++ R+AAQGF + A+ +G
Sbjct: 187 RLIRKSRDSPFVPVGIAGFLTVVSYGLYKLKYRKDQKMSIHLIHMRVAAQGFVVGAVTLG 246
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 25,773,071
Number of extensions: 671500
Number of successful extensions: 3130
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3101
Number of HSP's successfully gapped: 7
Length of query: 213
Length of database: 18,874,504
Length adjustment: 98
Effective length of query: 115
Effective length of database: 15,607,576
Effective search space: 1794871240
Effective search space used: 1794871240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014215
(641 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001090938.1| HIG1 domain family member 2A [Sus scrofa]. 211 2e-55
Alignment gi|XP_003132188.1| PREDICTED: HIG1 domain family member 1A-like... 56 2e-08
Alignment gi|XP_003131382.1| PREDICTED: HIG1 domain family member 1B-like... 51 4e-07
>ref|NP_001090938.1| HIG1 domain family member 2A [Sus scrofa].
Length = 106
Score = 211 bits (538), Expect = 2e-55
Identities = 103/106 (97%), Positives = 105/106 (99%)
Frame = +2
Query: 38 MATPGPATPEAPFEPSHPPVIEGFSPTVYSTSESFKEKFIRKTRENPMVPIGCLGTASAL 217
MATPGPATPEAPFEPSHPPVIEGFSPTVYSTSESFK+KFIRKTRENPMVPIGCLGTASAL
Sbjct: 1 MATPGPATPEAPFEPSHPPVIEGFSPTVYSTSESFKKKFIRKTRENPMVPIGCLGTASAL 60
Query: 218 TYGLYCFHRGQSQRSQLMMRTRIAAQGFTIVAILVGLAASTVRSRP 355
TYGLYCFHRGQSQRSQLMMRTRIAAQGFTIV ILVGLAAST+RSRP
Sbjct: 61 TYGLYCFHRGQSQRSQLMMRTRIAAQGFTIVVILVGLAASTMRSRP 106
>ref|XP_003132188.1| PREDICTED: HIG1 domain family member 1A-like isoform 2 [Sus
scrofa].
Length = 93
Score = 55.8 bits (133), Expect = 2e-08
Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Frame = +2
Query: 125 STSESFKEKFIRKTRENPMVPIGCLGTASALTYGLYCF-HRGQSQRSQLMMRTRIAAQGF 301
S E K IRK +E P VPIG G A+ + YGLY RG ++ S ++ R+AAQGF
Sbjct: 11 SYDEDQGSKLIRKAKEAPFVPIGMAGFAAIVAYGLYKLKSRGNTKMSVHLIHMRVAAQGF 70
Query: 302 TIVAILVGLAASTVR 346
+ A+ +G+ S R
Sbjct: 71 VVGAMTLGMGYSMYR 85
>ref|XP_003131382.1| PREDICTED: HIG1 domain family member 1B-like [Sus scrofa].
Length = 98
Score = 51.2 bits (121), Expect = 4e-07
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +2
Query: 134 ESFKEKFIRKTRENPMVPIGCLGTASALTYGLYCFH-RGQSQRSQLMMRTRIAAQGFTIV 310
+S EK +RKTRE+P+VP+G G Y +Y RG ++ S ++ TR+AAQ +
Sbjct: 14 DSVSEKLLRKTRESPLVPVGLGGCLVVAAYRIYRLKARGSTKMSIHLIHTRVAAQACAVG 73
Query: 311 AILVGLAASTVR 346
AI++G + R
Sbjct: 74 AIMLGAVYTMYR 85
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 16,430,012
Number of extensions: 502137
Number of successful extensions: 2053
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2046
Number of HSP's successfully gapped: 3
Length of query: 213
Length of database: 11,343,932
Length adjustment: 95
Effective length of query: 118
Effective length of database: 8,978,717
Effective search space: 1059488606
Effective search space used: 1059488606
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014215
(641 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080209.1| HIG1 domain family member 2A [Mus musculus]. 187 4e-48
Alignment gi|NP_062788.1| HIG1 domain family member 1A [Mus musculus]. 57 9e-09
Alignment gi|NP_001106138.1| HIG1 domain family, member 1A-like [Mus musc... 54 1e-07
Alignment gi|NP_543122.1| HIG1 domain family member 1B [Mus musculus]. 52 5e-07
Alignment gi|NP_001002900.1| HIG1 domain family member 1C [Mus musculus]. 50 1e-06
Alignment gi|NP_001019843.1| Mettl7a2-Higd1c readthrough transcript [Mus ... 50 1e-06
>ref|NP_080209.1| HIG1 domain family member 2A [Mus musculus].
Length = 106
Score = 187 bits (476), Expect = 4e-48
Identities = 89/105 (84%), Positives = 97/105 (92%)
Frame = +2
Query: 38 MATPGPATPEAPFEPSHPPVIEGFSPTVYSTSESFKEKFIRKTRENPMVPIGCLGTASAL 217
MA PGP +PEAPF+PS PPVIEGFSPTVYS E FKEKFIRKTRENPMVPIGCLGTA+AL
Sbjct: 1 MAAPGPVSPEAPFDPSKPPVIEGFSPTVYSNPEGFKEKFIRKTRENPMVPIGCLGTAAAL 60
Query: 218 TYGLYCFHRGQSQRSQLMMRTRIAAQGFTIVAILVGLAASTVRSR 352
TYGLYCFHRGQS RSQLMMRTRIAAQGFT+VAIL+GLAAS ++S+
Sbjct: 61 TYGLYCFHRGQSHRSQLMMRTRIAAQGFTVVAILLGLAASAMKSQ 105
>ref|NP_062788.1| HIG1 domain family member 1A [Mus musculus].
Length = 95
Score = 57.4 bits (137), Expect = 9e-09
Identities = 31/72 (43%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Frame = +2
Query: 125 STSESFKEKFIRKTRENPMVPIGCLGTASALTYGLYCF-HRGQSQRSQLMMRTRIAAQGF 301
S E KFIRK +E P VPIG G A+ + YGLY RG ++ S ++ R+AAQGF
Sbjct: 11 SYDEGQGSKFIRKAKETPFVPIGMAGFAAIVAYGLYKLKSRGNTKMSIHLIHMRVAAQGF 70
Query: 302 TIVAILVGLAAS 337
+ A+ +G+ S
Sbjct: 71 VVGAMTLGMGYS 82
>ref|NP_001106138.1| HIG1 domain family, member 1A-like [Mus musculus].
Length = 95
Score = 53.5 bits (127), Expect = 1e-07
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +2
Query: 125 STSESFKEKFIRKTRENPMVPIGCLGTASALTYGLYCF-HRGQSQRSQLMMRTRIAAQGF 301
S E KFIRK +E VPIG G A+ + YGLY RG ++ S ++ R+AAQGF
Sbjct: 11 SYDEGQGSKFIRKAKETLFVPIGMAGFAAIVAYGLYKLKSRGNTKMSIHLIHMRVAAQGF 70
Query: 302 TIVAILVGLAAS 337
+ A+ +G+ S
Sbjct: 71 VVGAMTLGMGYS 82
>ref|NP_543122.1| HIG1 domain family member 1B [Mus musculus].
Length = 98
Score = 51.6 bits (122), Expect = 5e-07
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Frame = +2
Query: 134 ESFKEKFIRKTRENPMVPIGCLGTASALTYGLYCFH-RGQSQRSQLMMRTRIAAQGFTIV 310
++ +KF+RKTRE+P+VPIG G Y +Y RG ++ S ++ TR+AAQ +
Sbjct: 15 DNLSKKFLRKTRESPLVPIGVAGCLVIAAYRIYRLKARGSTKLSIHLIHTRVAAQACAVG 74
Query: 311 AILVG 325
AI++G
Sbjct: 75 AIMLG 79
>ref|NP_001002900.1| HIG1 domain family member 1C [Mus musculus].
Length = 96
Score = 50.4 bits (119), Expect = 1e-06
Identities = 23/64 (35%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Frame = +2
Query: 149 KFIRKTRENPMVPIGCLGTASALTYGLYCFHRGQSQRSQL-MMRTRIAAQGFTIVAILVG 325
+ +RK+R++P VP+G G + L+YGLY + + Q+ L ++ R+AAQG + A+ +G
Sbjct: 17 RLLRKSRDSPFVPVGMAGFVAVLSYGLYKLNSRREQKMSLHLIHVRVAAQGCVVGAVTLG 76
Query: 326 LAAS 337
+ S
Sbjct: 77 VLYS 80
>ref|NP_001019843.1| Mettl7a2-Higd1c readthrough transcript [Mus musculus].
Length = 264
Score = 50.4 bits (119), Expect = 1e-06
Identities = 23/64 (35%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Frame = +2
Query: 149 KFIRKTRENPMVPIGCLGTASALTYGLYCFHRGQSQRSQL-MMRTRIAAQGFTIVAILVG 325
+ +RK+R++P VP+G G + L+YGLY + + Q+ L ++ R+AAQG + A+ +G
Sbjct: 185 RLLRKSRDSPFVPVGMAGFVAVLSYGLYKLNSRREQKMSLHLIHVRVAAQGCVVGAVTLG 244
Query: 326 LAAS 337
+ S
Sbjct: 245 VLYS 248
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 21,310,810
Number of extensions: 544642
Number of successful extensions: 2346
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2332
Number of HSP's successfully gapped: 6
Length of query: 213
Length of database: 15,617,559
Length adjustment: 97
Effective length of query: 116
Effective length of database: 12,704,067
Effective search space: 1473671772
Effective search space used: 1473671772
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014215
(641 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_620175.1| HIG1 domain family member 2A [Homo sapiens]. 177 5e-45
Alignment gi|NP_001093139.1| HIG1 domain family member 1A isoform b [Homo... 56 2e-08
Alignment gi|NP_001093138.1| HIG1 domain family member 1A isoform a [Homo... 56 2e-08
Alignment gi|NP_054775.2| HIG1 domain family member 1A isoform b [Homo sa... 56 2e-08
Alignment gi|NP_057522.1| HIG1 domain family member 1B [Homo sapiens]. 50 2e-06
Alignment gi|NP_001103089.1| HIG1 domain family member 1C [Homo sapiens]. 48 8e-06
>ref|NP_620175.1| HIG1 domain family member 2A [Homo sapiens].
Length = 106
Score = 177 bits (450), Expect = 5e-45
Identities = 84/106 (79%), Positives = 92/106 (86%)
Frame = +2
Query: 38 MATPGPATPEAPFEPSHPPVIEGFSPTVYSTSESFKEKFIRKTRENPMVPIGCLGTASAL 217
MATPGP PE PFEPS PPVIEG SPTVY ESFKEKF+RKTRENP+VPIGCL TA+AL
Sbjct: 1 MATPGPVIPEVPFEPSKPPVIEGLSPTVYRNPESFKEKFVRKTRENPVVPIGCLATAAAL 60
Query: 218 TYGLYCFHRGQSQRSQLMMRTRIAAQGFTIVAILVGLAASTVRSRP 355
TYGLY FHRG SQRSQLMMRTRIAAQGFT+ AIL+GLA + ++SRP
Sbjct: 61 TYGLYSFHRGNSQRSQLMMRTRIAAQGFTVAAILLGLAVTAMKSRP 106
>ref|NP_001093139.1| HIG1 domain family member 1A isoform b [Homo sapiens].
Length = 93
Score = 56.2 bits (134), Expect = 2e-08
Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Frame = +2
Query: 125 STSESFKEKFIRKTRENPMVPIGCLGTASALTYGLYCF-HRGQSQRSQLMMRTRIAAQGF 301
S E K IRK +E P VP+G G A+ + YGLY RG ++ S ++ R+AAQGF
Sbjct: 11 SYEEDQGSKLIRKAKEAPFVPVGIAGFAAIVAYGLYKLKSRGNTKMSIHLIHMRVAAQGF 70
Query: 302 TIVAILVGLAASTVR 346
+ A+ VG+ S R
Sbjct: 71 VVGAMTVGMGYSMYR 85
>ref|NP_001093138.1| HIG1 domain family member 1A isoform a [Homo sapiens].
Length = 107
Score = 56.2 bits (134), Expect = 2e-08
Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Frame = +2
Query: 125 STSESFKEKFIRKTRENPMVPIGCLGTASALTYGLYCF-HRGQSQRSQLMMRTRIAAQGF 301
S E K IRK +E P VP+G G A+ + YGLY RG ++ S ++ R+AAQGF
Sbjct: 25 SYEEDQGSKLIRKAKEAPFVPVGIAGFAAIVAYGLYKLKSRGNTKMSIHLIHMRVAAQGF 84
Query: 302 TIVAILVGLAASTVR 346
+ A+ VG+ S R
Sbjct: 85 VVGAMTVGMGYSMYR 99
>ref|NP_054775.2| HIG1 domain family member 1A isoform b [Homo sapiens].
Length = 93
Score = 56.2 bits (134), Expect = 2e-08
Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Frame = +2
Query: 125 STSESFKEKFIRKTRENPMVPIGCLGTASALTYGLYCF-HRGQSQRSQLMMRTRIAAQGF 301
S E K IRK +E P VP+G G A+ + YGLY RG ++ S ++ R+AAQGF
Sbjct: 11 SYEEDQGSKLIRKAKEAPFVPVGIAGFAAIVAYGLYKLKSRGNTKMSIHLIHMRVAAQGF 70
Query: 302 TIVAILVGLAASTVR 346
+ A+ VG+ S R
Sbjct: 71 VVGAMTVGMGYSMYR 85
>ref|NP_057522.1| HIG1 domain family member 1B [Homo sapiens].
Length = 99
Score = 49.7 bits (117), Expect = 2e-06
Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Frame = +2
Query: 146 EKFIRKTRENPMVPIGCLGTASALTYGLYCFH-RGQSQRSQLMMRTRIAAQGFTIVAILV 322
EK +RKTRE+P+VPIG G Y +Y RG ++ S ++ TR+AAQ + AI++
Sbjct: 19 EKLLRKTRESPLVPIGLGGCLVVAAYRIYRLRSRGSTKMSIHLIHTRVAAQACAVGAIML 78
Query: 323 G 325
G
Sbjct: 79 G 79
>ref|NP_001103089.1| HIG1 domain family member 1C [Homo sapiens].
Length = 97
Score = 47.8 bits (112), Expect = 8e-06
Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = +2
Query: 149 KFIRKTRENPMVPIGCLGTASALTYGLYCFHRGQSQRSQL-MMRTRIAAQGFTIVAILVG 325
+ IRK+R++P VPIG G + ++ GLY + Q+ + ++ R+AAQGF + A+ +G
Sbjct: 18 RLIRKSRDSPFVPIGIAGFVTVVSCGLYKLKYRRDQKMSIHLIHMRVAAQGFVVGAVTLG 77
Query: 326 LAAS 337
+ S
Sbjct: 78 VLYS 81
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 25,209,618
Number of extensions: 650587
Number of successful extensions: 2995
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2985
Number of HSP's successfully gapped: 6
Length of query: 213
Length of database: 18,297,164
Length adjustment: 98
Effective length of query: 115
Effective length of database: 15,066,692
Effective search space: 1732669580
Effective search space used: 1732669580
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014215
(641 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 801 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 801 bits (404), Expect = 0.0
Identities = 404/404 (100%)
Strand = Plus / Minus
Query: 190 aggctgcctgggcacagcgtctgcccttacctatggtctctactgcttccaccggggtca 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83138950 aggctgcctgggcacagcgtctgcccttacctatggtctctactgcttccaccggggtca 83138891
Query: 250 gagccagcgctcccagctcatgatgcgcacccgaatcgccgcccagggtttcacgatagt 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83138890 gagccagcgctcccagctcatgatgcgcacccgaatcgccgcccagggtttcacgatagt 83138831
Query: 310 agccatcttggtgggtctggctgcatccaccgtgagatctcgaccctgagggcaatggcc 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83138830 agccatcttggtgggtctggctgcatccaccgtgagatctcgaccctgagggcaatggcc 83138771
Query: 370 tggccttgaaaactctgcggagatcagacccagccccaggagcagccaccagtcctgcca 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83138770 tggccttgaaaactctgcggagatcagacccagccccaggagcagccaccagtcctgcca 83138711
Query: 430 ccggaattgtttcctcatctcccctgacaggcctctgtatgggttggggcagaagtggcc 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83138710 ccggaattgtttcctcatctcccctgacaggcctctgtatgggttggggcagaagtggcc 83138651
Query: 490 aattgtgtgactgacagatgagattttttcccaggaatctcaggttcggttcagttgtaa 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83138650 aattgtgtgactgacagatgagattttttcccaggaatctcaggttcggttcagttgtaa 83138591
Query: 550 tgcaccatctccactctttacttaataaacgctgatccacttgt 593
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83138590 tgcaccatctccactctttacttaataaacgctgatccacttgt 83138547
Score = 379 bits (191), Expect = e-102
Identities = 191/191 (100%)
Strand = Plus / Minus
Query: 2 agcgtccggattctctccttagcggttgcccagaacatggcaactcctggccctgcgacc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83139703 agcgtccggattctctccttagcggttgcccagaacatggcaactcctggccctgcgacc 83139644
Query: 62 ccggaggcaccctttgaaccgtcgcaccccccagtcattgagggctttagccccactgtg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83139643 ccggaggcaccctttgaaccgtcgcaccccccagtcattgagggctttagccccactgtg 83139584
Query: 122 tacagcacttcggaaagcttcaaggagaagtttattcgcaagacccgcgagaatccaatg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83139583 tacagcacttcggaaagcttcaaggagaagtttattcgcaagacccgcgagaatccaatg 83139524
Query: 182 gtacccatagg 192
|||||||||||
Sbjct: 83139523 gtacccatagg 83139513
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 15,254,053
Number of extensions: 278
Number of successful extensions: 278
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 278
Number of HSP's successfully gapped: 2
Length of query: 641
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 620
Effective length of database: 2,808,413,156
Effective search space: 1741216156720
Effective search space used: 1741216156720
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)