Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014224
(1535 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_548372.2| PREDICTED: similar to small nuclear RNA activat... 236 6e-62
>ref|XP_548372.2| PREDICTED: similar to small nuclear RNA activating complex,
polypeptide 4, 190kDa [Canis familiaris].
Length = 1949
Score = 236 bits (601), Expect = 6e-62
Identities = 169/380 (44%), Positives = 186/380 (48%), Gaps = 53/380 (13%)
Frame = +3
Query: 156 MAGYARRPGVTPLSRARSLVIPD------------------------------------- 224
MAGYARRPGV PLSRARSLVIPD
Sbjct: 1 MAGYARRPGVPPLSRARSLVIPDAPAFYERRSCLPQLDCERPHGRDLDSHFFGIRPTFMC 60
Query: 225 -------------DDKLEDLSEANPFSFKEFLKTKNLGLSKEDT-DGRVYSKEATRHALG 362
DKLEDL+EANPFSFKEFLKTKNL LS EDT + R+YSK
Sbjct: 61 YVPSPVLASVGDTGDKLEDLTEANPFSFKEFLKTKNLTLSGEDTANNRIYSK-------- 112
Query: 363 LDRDSPASQTAGYGLDYQQPFFEDPTGAGXXXXXXXXXXX--GWHGAYLPSTVEQTHSSR 536
T GYGL+YQQPFFEDPTGAG GW+GAYLPSTVEQT SS
Sbjct: 113 ---------TVGYGLEYQQPFFEDPTGAGDLLDEDEDEDEDNGWNGAYLPSTVEQTRSSG 163
Query: 537 GAASTSPCSTYVSFFSNPSELVGPESLPSWTPSDAELRGSPAGSPGTDFAAHGEALGDRR 716
A STSPCSTYVSFFS PSELVGPE+LP
Sbjct: 164 VATSTSPCSTYVSFFSTPSELVGPETLPP------------------------------- 192
Query: 717 LRTLQISYEALKDENSKLRRKLTEVQSFSETQTEMVRTLERQLEAKMMKEERDFHDLESA 896
+RTL+ KL K+ + +S +V+ +E
Sbjct: 193 VRTLE----------RKLEAKMIKEESDYHDLESVVQQVE-------------------- 222
Query: 897 VRQVEQNLELMTKRAVKAENHVVKLKQEVSLLQAQVSNLKRENEALRAGQGASLTVVKQN 1076
QNLELMT AQVSN KRENEALR+GQGASLTVVKQN
Sbjct: 223 -----QNLELMT---------------------AQVSNFKRENEALRSGQGASLTVVKQN 256
Query: 1077 TDVALQNLRVVMHNAHASIR 1136
TDVALQNLRVVM+NAHASI+
Sbjct: 257 TDVALQNLRVVMNNAHASIK 276
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,532,695
Number of extensions: 1189736
Number of successful extensions: 6890
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6794
Number of HSP's successfully gapped: 2
Length of query: 511
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 404
Effective length of database: 15,307,552
Effective search space: 6184251008
Effective search space used: 6184251008
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-014224
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014224
(1535 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039605.1| serologically defined colon cancer antigen 3... 595 e-170
>ref|NP_001039605.1| serologically defined colon cancer antigen 3 homolog [Bos taurus].
Length = 359
Score = 595 bits (1534), Expect = e-170
Identities = 305/357 (85%), Positives = 324/357 (90%)
Frame = +3
Query: 156 MAGYARRPGVTPLSRARSLVIPDDDKLEDLSEANPFSFKEFLKTKNLGLSKEDTDGRVYS 335
MAGYARRPGVTPLSRARSLVIPDDDKL DL ANPFSFKEFLKTKNL LSKEDTD RVYS
Sbjct: 1 MAGYARRPGVTPLSRARSLVIPDDDKLGDLEAANPFSFKEFLKTKNLSLSKEDTDSRVYS 60
Query: 336 KEATRHALGLDRDSPASQTAGYGLDYQQPFFEDPTGAGXXXXXXXXXXXGWHGAYLPSTV 515
+EATRH+LGLDR SPASQT GYGL+YQQPFFEDPTGAG GW+GAYLPS +
Sbjct: 61 QEATRHSLGLDRTSPASQTVGYGLEYQQPFFEDPTGAGDLLDEDEDEEDGWNGAYLPSAM 120
Query: 516 EQTHSSRGAASTSPCSTYVSFFSNPSELVGPESLPSWTPSDAELRGSPAGSPGTDFAAHG 695
EQTHSSR AASTSPCSTYVSFFSNPSELVGPESLP WT SD++ R SP GSP DF AHG
Sbjct: 121 EQTHSSRVAASTSPCSTYVSFFSNPSELVGPESLPPWTLSDSDSRISPTGSPSADFTAHG 180
Query: 696 EALGDRRLRTLQISYEALKDENSKLRRKLTEVQSFSETQTEMVRTLERQLEAKMMKEERD 875
E+LGDR LRTLQISYEALKDENSKLRRKLTE+QSFSETQTEMVRTLER+LEAKM+KEE D
Sbjct: 181 ESLGDRHLRTLQISYEALKDENSKLRRKLTEIQSFSETQTEMVRTLERKLEAKMIKEESD 240
Query: 876 FHDLESAVRQVEQNLELMTKRAVKAENHVVKLKQEVSLLQAQVSNLKRENEALRAGQGAS 1055
+HDLES V+QVEQNLELMTKRAVKAENHV+KL+QEVSLLQAQVS+ KRENEALR+GQGAS
Sbjct: 241 YHDLESVVQQVEQNLELMTKRAVKAENHVLKLRQEVSLLQAQVSDFKRENEALRSGQGAS 300
Query: 1056 LTVVKQNTDVALQNLRVVMHNAHASIRQLVSGAETLNLVAEILKSIDRISEIKDQEE 1226
LTVVKQNTDVALQNLRVVM+NAHASI+QLVSGAETLNLVAEILKSIDRISEIKDQ E
Sbjct: 301 LTVVKQNTDVALQNLRVVMNNAHASIKQLVSGAETLNLVAEILKSIDRISEIKDQGE 357
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,013,280
Number of extensions: 1248388
Number of successful extensions: 6216
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6140
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 404
Effective length of database: 14,140,958
Effective search space: 5712947032
Effective search space used: 5712947032
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014224
(1535 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003362233.1| PREDICTED: serologically defined colon cance... 393 e-109
>ref|XP_003362233.1| PREDICTED: serologically defined colon cancer antigen 3 homolog [Sus
scrofa].
Length = 342
Score = 393 bits (1009), Expect = e-109
Identities = 233/358 (65%), Positives = 249/358 (69%), Gaps = 11/358 (3%)
Frame = +3
Query: 189 PLSRARSLVIPDDDKLEDLSEANPFSFKEFLKTKNLGLSKEDTDGRVYSKEATRHALGLD 368
P RA V DDKLEDLSEANPFSFKEFLKTKNLGLSKEDTDGRVYSKEATRHALGLD
Sbjct: 9 PQDRAHXSVGDTDDKLEDLSEANPFSFKEFLKTKNLGLSKEDTDGRVYSKEATRHALGLD 68
Query: 369 RDSPASQTAGYGLDYQQPFFEDPTGAGXXXXXXXXXXXGWHGAYLPSTVEQTHSSRGAAS 548
RDSPASQTAG EDPTGAG GWHGAYLPSTVEQTHSSRGAAS
Sbjct: 69 RDSPASQTAGXXXXXXXXXXEDPTGAGDLLDEDEDEDEGWHGAYLPSTVEQTHSSRGAAS 128
Query: 549 TSPCSTYVSFFSNPSELVGPESLPSWTPSDAELRGSPAGSPGTDFAAHGEALGDRRLRTL 728
TSPCSTYVSFFSNPSELVGPESLPSWTPSDA AHGEALGDRRLRTL
Sbjct: 129 TSPCSTYVSFFSNPSELVGPESLPSWTPSDA-------------XXAHGEALGDRRLRTL 175
Query: 729 QISYEALKDENSKLRRKLTEVQSFSETQTEMVRTLE---------RQLEAKMMKEERDFH 881
QISYEALKDENSKLRRKLTEVQSFSETQTEMV + + R+ + R
Sbjct: 176 QISYEALKDENSKLRRKLTEVQSFSETQTEMVXSAQGPWQALGGVRRHRGPRPRGRRAGC 235
Query: 882 DLESAVRQVEQNLELMTKRAV--KAENHVVKLKQEVSLLQAQVSNLKRENEALRAGQGAS 1055
+ E++ + R + + V+ + QAQVSNLKRENEALRAGQGAS
Sbjct: 236 EAEASPVSTAPPSPGASPRCLYRGSAGRVLTSPPRPAGPQAQVSNLKRENEALRAGQGAS 295
Query: 1056 LTVVKQNTDVALQNLRVVMHNAHASIRQLVSGAETLNLVAEILKSIDRISEIKDQEES 1229
LTV +A Q+LR+ + RQLVSGAETLNLVAEILKSIDRISEIKDQEES
Sbjct: 296 LTV------LAAQHLRLC-----SRFRQLVSGAETLNLVAEILKSIDRISEIKDQEES 342
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,698,820
Number of extensions: 960292
Number of successful extensions: 4014
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3979
Number of HSP's successfully gapped: 2
Length of query: 511
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 408
Effective length of database: 8,779,541
Effective search space: 3582052728
Effective search space used: 3582052728
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014224
(1535 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001078877.1| serologically defined colon cancer antigen 3... 521 e-148
Alignment gi|NP_001078876.1| serologically defined colon cancer antigen 3... 508 e-144
Alignment gi|NP_080839.2| serologically defined colon cancer antigen 3 ho... 487 e-138
>ref|NP_001078877.1| serologically defined colon cancer antigen 3 homolog isoform 4 [Mus
musculus].
Length = 359
Score = 521 bits (1343), Expect = e-148
Identities = 273/362 (75%), Positives = 303/362 (83%), Gaps = 4/362 (1%)
Frame = +3
Query: 156 MAGYARRPGVTPLSRARSLVIPDDDKLEDLSEANPFSFKEFLKTKNLGLSKEDTD-GRVY 332
M+GYARR G PLSR RSLV+PD DKLEDL EANPFSFKEFLKTKNL LSKEDT R+Y
Sbjct: 1 MSGYARRQGAPPLSRTRSLVVPDGDKLEDLEEANPFSFKEFLKTKNLSLSKEDTTTSRIY 60
Query: 333 SKEATRHALGLDRDSPASQTAGYGLDYQQPFFEDPTGAGXXXXXXXXXXXGWHGAYLPST 512
KEA+RH LGL+ SPASQ GYGL+ QQPFFEDPT A GW+ YLPS
Sbjct: 61 PKEASRHPLGLEHSSPASQLMGYGLESQQPFFEDPTRASNLEEDEDD---GWNITYLPSA 117
Query: 513 VEQTHSSRGAASTSPCSTYVSFFSNPSELVGPESLPSWTPSDAELR---GSPAGSPGTDF 683
V+QTHSSR + PC TY+SFFSN SEL PESLP WT SD + R SPAGSP DF
Sbjct: 118 VDQTHSSRDTQDSPPCDTYLSFFSNSSELACPESLPPWTLSDTDSRISPASPAGSPNADF 177
Query: 684 AAHGEALGDRRLRTLQISYEALKDENSKLRRKLTEVQSFSETQTEMVRTLERQLEAKMMK 863
AAH E+LGDR LRTLQISYEALKDENSKLRRKL EVQSFSETQTEMVRTLER+LEAKM+K
Sbjct: 178 AAHEESLGDRHLRTLQISYEALKDENSKLRRKLNEVQSFSETQTEMVRTLERKLEAKMIK 237
Query: 864 EERDFHDLESAVRQVEQNLELMTKRAVKAENHVVKLKQEVSLLQAQVSNLKRENEALRAG 1043
EE DFHDLES V+QVEQNLELMTKRAVKAENHV+KLKQE++LLQAQ+SNL+RENEALR+G
Sbjct: 238 EESDFHDLESVVQQVEQNLELMTKRAVKAENHVLKLKQEINLLQAQLSNLRRENEALRSG 297
Query: 1044 QGASLTVVKQNTDVALQNLRVVMHNAHASIRQLVSGAETLNLVAEILKSIDRISEIKDQE 1223
QGASL+VVKQNTDVALQNL +VM++AHASI+QLVSGA+TLNLVAEILKSIDRISE+KD+
Sbjct: 298 QGASLSVVKQNTDVALQNLHLVMNSAHASIKQLVSGADTLNLVAEILKSIDRISEVKDEV 357
Query: 1224 ES 1229
+S
Sbjct: 358 DS 359
>ref|NP_001078876.1| serologically defined colon cancer antigen 3 homolog isoform 3 [Mus
musculus].
Length = 382
Score = 508 bits (1309), Expect = e-144
Identities = 273/385 (70%), Positives = 303/385 (78%), Gaps = 27/385 (7%)
Frame = +3
Query: 156 MAGYARRPGVTPLSRARSLVIPDD-----------------------DKLEDLSEANPFS 266
M+GYARR G PLSR RSLV+PD DKLEDL EANPFS
Sbjct: 1 MSGYARRQGAPPLSRTRSLVVPDGFGYGKGKCTNQGPSGAPETRFGGDKLEDLEEANPFS 60
Query: 267 FKEFLKTKNLGLSKEDTD-GRVYSKEATRHALGLDRDSPASQTAGYGLDYQQPFFEDPTG 443
FKEFLKTKNL LSKEDT R+Y KEA+RH LGL+ SPASQ GYGL+ QQPFFEDPT
Sbjct: 61 FKEFLKTKNLSLSKEDTTTSRIYPKEASRHPLGLEHSSPASQLMGYGLESQQPFFEDPTR 120
Query: 444 AGXXXXXXXXXXXGWHGAYLPSTVEQTHSSRGAASTSPCSTYVSFFSNPSELVGPESLPS 623
A GW+ YLPS V+QTHSSR + PC TY+SFFSN SEL PESLP
Sbjct: 121 ASNLEEDEDD---GWNITYLPSAVDQTHSSRDTQDSPPCDTYLSFFSNSSELACPESLPP 177
Query: 624 WTPSDAELR---GSPAGSPGTDFAAHGEALGDRRLRTLQISYEALKDENSKLRRKLTEVQ 794
WT SD + R SPAGSP DFAAH E+LGDR LRTLQISYEALKDENSKLRRKL EVQ
Sbjct: 178 WTLSDTDSRISPASPAGSPNADFAAHEESLGDRHLRTLQISYEALKDENSKLRRKLNEVQ 237
Query: 795 SFSETQTEMVRTLERQLEAKMMKEERDFHDLESAVRQVEQNLELMTKRAVKAENHVVKLK 974
SFSETQTEMVRTLER+LEAKM+KEE DFHDLES V+QVEQNLELMTKRAVKAENHV+KLK
Sbjct: 238 SFSETQTEMVRTLERKLEAKMIKEESDFHDLESVVQQVEQNLELMTKRAVKAENHVLKLK 297
Query: 975 QEVSLLQAQVSNLKRENEALRAGQGASLTVVKQNTDVALQNLRVVMHNAHASIRQLVSGA 1154
QE++LLQAQ+SNL+RENEALR+GQGASL+VVKQNTDVALQNL +VM++AHASI+QLVSGA
Sbjct: 298 QEINLLQAQLSNLRRENEALRSGQGASLSVVKQNTDVALQNLHLVMNSAHASIKQLVSGA 357
Query: 1155 ETLNLVAEILKSIDRISEIKDQEES 1229
+TLNLVAEILKSIDRISE+KD+ +S
Sbjct: 358 DTLNLVAEILKSIDRISEVKDEVDS 382
>ref|NP_080839.2| serologically defined colon cancer antigen 3 homolog isoform 1 [Mus
musculus].
Length = 432
Score = 487 bits (1254), Expect = e-138
Identities = 256/338 (75%), Positives = 284/338 (84%), Gaps = 4/338 (1%)
Frame = +3
Query: 228 DKLEDLSEANPFSFKEFLKTKNLGLSKEDTD-GRVYSKEATRHALGLDRDSPASQTAGYG 404
DKLEDL EANPFSFKEFLKTKNL LSKEDT R+Y KEA+RH LGL+ SPASQ GYG
Sbjct: 98 DKLEDLEEANPFSFKEFLKTKNLSLSKEDTTTSRIYPKEASRHPLGLEHSSPASQLMGYG 157
Query: 405 LDYQQPFFEDPTGAGXXXXXXXXXXXGWHGAYLPSTVEQTHSSRGAASTSPCSTYVSFFS 584
L+ QQPFFEDPT A GW+ YLPS V+QTHSSR + PC TY+SFFS
Sbjct: 158 LESQQPFFEDPTRASNLEEDEDD---GWNITYLPSAVDQTHSSRDTQDSPPCDTYLSFFS 214
Query: 585 NPSELVGPESLPSWTPSDAELR---GSPAGSPGTDFAAHGEALGDRRLRTLQISYEALKD 755
N SEL PESLP WT SD + R SPAGSP DFAAH E+LGDR LRTLQISYEALKD
Sbjct: 215 NSSELACPESLPPWTLSDTDSRISPASPAGSPNADFAAHEESLGDRHLRTLQISYEALKD 274
Query: 756 ENSKLRRKLTEVQSFSETQTEMVRTLERQLEAKMMKEERDFHDLESAVRQVEQNLELMTK 935
ENSKLRRKL EVQSFSETQTEMVRTLER+LEAKM+KEE DFHDLES V+QVEQNLELMTK
Sbjct: 275 ENSKLRRKLNEVQSFSETQTEMVRTLERKLEAKMIKEESDFHDLESVVQQVEQNLELMTK 334
Query: 936 RAVKAENHVVKLKQEVSLLQAQVSNLKRENEALRAGQGASLTVVKQNTDVALQNLRVVMH 1115
RAVKAENHV+KLKQE++LLQAQ+SNL+RENEALR+GQGASL+VVKQNTDVALQNL +VM+
Sbjct: 335 RAVKAENHVLKLKQEINLLQAQLSNLRRENEALRSGQGASLSVVKQNTDVALQNLHLVMN 394
Query: 1116 NAHASIRQLVSGAETLNLVAEILKSIDRISEIKDQEES 1229
+AHASI+QLVSGA+TLNLVAEILKSIDRISE+KD+ +S
Sbjct: 395 SAHASIKQLVSGADTLNLVAEILKSIDRISEVKDEVDS 432
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,022,810
Number of extensions: 951443
Number of successful extensions: 5129
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5065
Number of HSP's successfully gapped: 3
Length of query: 511
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 405
Effective length of database: 12,433,743
Effective search space: 5035665915
Effective search space used: 5035665915
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014224
(1535 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001034797.1| serologically defined colon cancer antigen 3... 559 e-159
Alignment gi|NP_006634.3| serologically defined colon cancer antigen 3 is... 536 e-152
Alignment gi|NP_001034796.1| serologically defined colon cancer antigen 3... 521 e-148
>ref|NP_001034797.1| serologically defined colon cancer antigen 3 isoform 3 [Homo
sapiens].
Length = 362
Score = 559 bits (1441), Expect = e-159
Identities = 284/360 (78%), Positives = 309/360 (85%), Gaps = 3/360 (0%)
Frame = +3
Query: 156 MAGYARRPGVTPLSRARSLVIPDDDKLEDLSEANPFSFKEFLKTKNLGLSKEDTDGRVYS 335
M+GY RRPG TPLSRARSL IPDDD+ EDL EANPFSF+EFLKTKNLGLSKED R+Y+
Sbjct: 1 MSGYQRRPGATPLSRARSLAIPDDDRFEDLEEANPFSFREFLKTKNLGLSKEDPASRIYA 60
Query: 336 KEATRHALGLDRDSPASQTAGYGLDYQQPFFEDPTGAGXXXXXXXXXXXGWHGAYLPSTV 515
KEA+RH+LGLD +SP SQT GYGL+YQQPFFEDPTGAG GW GAYLPS +
Sbjct: 61 KEASRHSLGLDHNSPPSQTGGYGLEYQQPFFEDPTGAGDLLDEEEDEDTGWSGAYLPSAI 120
Query: 516 EQTHSSRGAASTSPCSTYVSFFSNPSELVGPESLPSWTPSDAELR---GSPAGSPGTDFA 686
EQTH R A TSPCSTY+SFFS PSEL GPESLPSW SD + R SPAGSP DFA
Sbjct: 121 EQTHPERVPAGTSPCSTYLSFFSTPSELAGPESLPSWALSDTDSRVSPASPAGSPSADFA 180
Query: 687 AHGEALGDRRLRTLQISYEALKDENSKLRRKLTEVQSFSETQTEMVRTLERQLEAKMMKE 866
HGE+LGDR LRTLQISY+ALKDENSKLRRKL EVQSFSE QTEMVRTLER+LEAKM+KE
Sbjct: 181 VHGESLGDRHLRTLQISYDALKDENSKLRRKLNEVQSFSEAQTEMVRTLERKLEAKMIKE 240
Query: 867 ERDFHDLESAVRQVEQNLELMTKRAVKAENHVVKLKQEVSLLQAQVSNLKRENEALRAGQ 1046
E D+HDLES V+QVEQNLELMTKRAVKAENHVVKLKQE+SLLQAQVSN +RENEALR GQ
Sbjct: 241 ESDYHDLESVVQQVEQNLELMTKRAVKAENHVVKLKQEISLLQAQVSNFQRENEALRCGQ 300
Query: 1047 GASLTVVKQNTDVALQNLRVVMHNAHASIRQLVSGAETLNLVAEILKSIDRISEIKDQEE 1226
GASLTVVKQN DVALQNLRVVM++A ASI+QLVSGAETLNLVAEILKSIDRISE+KD+EE
Sbjct: 301 GASLTVVKQNADVALQNLRVVMNSAQASIKQLVSGAETLNLVAEILKSIDRISEVKDEEE 360
>ref|NP_006634.3| serologically defined colon cancer antigen 3 isoform 2 [Homo
sapiens].
Length = 412
Score = 536 bits (1380), Expect = e-152
Identities = 284/410 (69%), Positives = 309/410 (75%), Gaps = 53/410 (12%)
Frame = +3
Query: 156 MAGYARRPGVTPLSRARSLVIPD------------------------------------- 224
M+GY RRPG TPLSRARSL IPD
Sbjct: 1 MSGYQRRPGATPLSRARSLAIPDAPAFYERRSCLPQLNCERPHGRDLDSPFFGIRPAFMC 60
Query: 225 -------------DDKLEDLSEANPFSFKEFLKTKNLGLSKEDTDGRVYSKEATRHALGL 365
DD+ EDL EANPFSF+EFLKTKNLGLSKED R+Y+KEA+RH+LGL
Sbjct: 61 YVPSPVLASVGDTDDRFEDLEEANPFSFREFLKTKNLGLSKEDPASRIYAKEASRHSLGL 120
Query: 366 DRDSPASQTAGYGLDYQQPFFEDPTGAGXXXXXXXXXXXGWHGAYLPSTVEQTHSSRGAA 545
D +SP SQT GYGL+YQQPFFEDPTGAG GW GAYLPS +EQTH R A
Sbjct: 121 DHNSPPSQTGGYGLEYQQPFFEDPTGAGDLLDEEEDEDTGWSGAYLPSAIEQTHPERVPA 180
Query: 546 STSPCSTYVSFFSNPSELVGPESLPSWTPSDAELR---GSPAGSPGTDFAAHGEALGDRR 716
TSPCSTY+SFFS PSEL GPESLPSW SD + R SPAGSP DFA HGE+LGDR
Sbjct: 181 GTSPCSTYLSFFSTPSELAGPESLPSWALSDTDSRVSPASPAGSPSADFAVHGESLGDRH 240
Query: 717 LRTLQISYEALKDENSKLRRKLTEVQSFSETQTEMVRTLERQLEAKMMKEERDFHDLESA 896
LRTLQISY+ALKDENSKLRRKL EVQSFSE QTEMVRTLER+LEAKM+KEE D+HDLES
Sbjct: 241 LRTLQISYDALKDENSKLRRKLNEVQSFSEAQTEMVRTLERKLEAKMIKEESDYHDLESV 300
Query: 897 VRQVEQNLELMTKRAVKAENHVVKLKQEVSLLQAQVSNLKRENEALRAGQGASLTVVKQN 1076
V+QVEQNLELMTKRAVKAENHVVKLKQE+SLLQAQVSN +RENEALR GQGASLTVVKQN
Sbjct: 301 VQQVEQNLELMTKRAVKAENHVVKLKQEISLLQAQVSNFQRENEALRCGQGASLTVVKQN 360
Query: 1077 TDVALQNLRVVMHNAHASIRQLVSGAETLNLVAEILKSIDRISEIKDQEE 1226
DVALQNLRVVM++A ASI+QLVSGAETLNLVAEILKSIDRISE+KD+EE
Sbjct: 361 ADVALQNLRVVMNSAQASIKQLVSGAETLNLVAEILKSIDRISEVKDEEE 410
>ref|NP_001034796.1| serologically defined colon cancer antigen 3 isoform 1 [Homo
sapiens].
Length = 435
Score = 521 bits (1341), Expect = e-148
Identities = 265/337 (78%), Positives = 289/337 (85%), Gaps = 3/337 (0%)
Frame = +3
Query: 225 DDKLEDLSEANPFSFKEFLKTKNLGLSKEDTDGRVYSKEATRHALGLDRDSPASQTAGYG 404
DD+ EDL EANPFSF+EFLKTKNLGLSKED R+Y+KEA+RH+LGLD +SP SQT GYG
Sbjct: 97 DDRFEDLEEANPFSFREFLKTKNLGLSKEDPASRIYAKEASRHSLGLDHNSPPSQTGGYG 156
Query: 405 LDYQQPFFEDPTGAGXXXXXXXXXXXGWHGAYLPSTVEQTHSSRGAASTSPCSTYVSFFS 584
L+YQQPFFEDPTGAG GW GAYLPS +EQTH R A TSPCSTY+SFFS
Sbjct: 157 LEYQQPFFEDPTGAGDLLDEEEDEDTGWSGAYLPSAIEQTHPERVPAGTSPCSTYLSFFS 216
Query: 585 NPSELVGPESLPSWTPSDAELR---GSPAGSPGTDFAAHGEALGDRRLRTLQISYEALKD 755
PSEL GPESLPSW SD + R SPAGSP DFA HGE+LGDR LRTLQISY+ALKD
Sbjct: 217 TPSELAGPESLPSWALSDTDSRVSPASPAGSPSADFAVHGESLGDRHLRTLQISYDALKD 276
Query: 756 ENSKLRRKLTEVQSFSETQTEMVRTLERQLEAKMMKEERDFHDLESAVRQVEQNLELMTK 935
ENSKLRRKL EVQSFSE QTEMVRTLER+LEAKM+KEE D+HDLES V+QVEQNLELMTK
Sbjct: 277 ENSKLRRKLNEVQSFSEAQTEMVRTLERKLEAKMIKEESDYHDLESVVQQVEQNLELMTK 336
Query: 936 RAVKAENHVVKLKQEVSLLQAQVSNLKRENEALRAGQGASLTVVKQNTDVALQNLRVVMH 1115
RAVKAENHVVKLKQE+SLLQAQVSN +RENEALR GQGASLTVVKQN DVALQNLRVVM+
Sbjct: 337 RAVKAENHVVKLKQEISLLQAQVSNFQRENEALRCGQGASLTVVKQNADVALQNLRVVMN 396
Query: 1116 NAHASIRQLVSGAETLNLVAEILKSIDRISEIKDQEE 1226
+A ASI+QLVSGAETLNLVAEILKSIDRISE+KD+EE
Sbjct: 397 SAQASIKQLVSGAETLNLVAEILKSIDRISEVKDEEE 433
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,368,895
Number of extensions: 1148653
Number of successful extensions: 6346
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6281
Number of HSP's successfully gapped: 3
Length of query: 511
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 404
Effective length of database: 14,770,016
Effective search space: 5967086464
Effective search space used: 5967086464
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014224
(1535 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896489.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 442 e-121
>gb|GL896489.1| Sus scrofa unplaced genomic scaffold chrU_scaffold824
Length = 16220
Score = 442 bits (223), Expect = e-121
Identities = 223/223 (100%)
Strand = Plus / Plus
Query: 427 tcgaagacccgacgggggcgggcgacctcctggacgaggacgaggacgaggacgagggct 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10520 tcgaagacccgacgggggcgggcgacctcctggacgaggacgaggacgaggacgagggct 10579
Query: 487 ggcacggggcctacctgccgtccaccgtggagcagacgcactcctccaggggcgcggcca 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10580 ggcacggggcctacctgccgtccaccgtggagcagacgcactcctccaggggcgcggcca 10639
Query: 547 gcacgtcgccctgcagcacctacgtctcctttttctccaacccctcggagctggtggggc 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10640 gcacgtcgccctgcagcacctacgtctcctttttctccaacccctcggagctggtggggc 10699
Query: 607 ccgagtctctgccctcgtggacaccgagcgatgccgagttgcg 649
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10700 ccgagtctctgccctcgtggacaccgagcgatgccgagttgcg 10742
Score = 289 bits (146), Expect = 2e-75
Identities = 146/146 (100%)
Strand = Plus / Plus
Query: 1132 tcaggcagctggtttctggagccgaaaccctgaatcttgttgctgaaatccttaaatcga 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13881 tcaggcagctggtttctggagccgaaaccctgaatcttgttgctgaaatccttaaatcga 13940
Query: 1192 tagacagaatttctgagattaaagaccaggaggagtcttgagaaccgcaggggtctcccg 1251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13941 tagacagaatttctgagattaaagaccaggaggagtcttgagaaccgcaggggtctcccg 14000
Query: 1252 ctcccagctctgtttacattccgcag 1277
||||||||||||||||||||||||||
Sbjct: 14001 ctcccagctctgtttacattccgcag 14026
Score = 228 bits (115), Expect = 7e-57
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 225 gatgacaaactggaagatctctcagaagcaaatccattctcctttaaagagtttctgaag 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9888 gatgacaaactggaagatctctcagaagcaaatccattctcctttaaagagtttctgaag 9947
Query: 285 accaagaacctcggcctgtcgaaagaggacaccgacggcagagtttattcaaaag 339
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9948 accaagaacctcggcctgtcgaaagaggacaccgacggcagagtttattcaaaag 10002
Score = 178 bits (90), Expect = 6e-42
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1305 ctgtgtctttaaacgcgccgtcctcccccgaagtagaagcatctctgtgctggccacccc 1364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14127 ctgtgtctttaaacgcgccgtcctcccccgaagtagaagcatctctgtgctggccacccc 14186
Query: 1365 cgcctgtaagagcacggctggcccctcgct 1394
||||||||||||||||||||||||||||||
Sbjct: 14187 cgcctgtaagagcacggctggcccctcgct 14216
Score = 153 bits (77), Expect = 3e-34
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 992 ccaggcgcaggtctctaacttgaagcgggagaatgaggccctgcgggcgggccagggcgc 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13109 ccaggcgcaggtctctaacttgaagcgggagaatgaggccctgcgggcgggccagggcgc 13168
Query: 1052 cagcctgacggtggtga 1068
|||||||||||||||||
Sbjct: 13169 cagcctgacggtggtga 13185
Score = 149 bits (75), Expect = 5e-33
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 747 ctgaaagatgaaaattctaagctaagaagaaagctgactgaggttcagagcttctctgaa 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11430 ctgaaagatgaaaattctaagctaagaagaaagctgactgaggttcagagcttctctgaa 11489
Query: 807 actcaaacagaaatg 821
|||||||||||||||
Sbjct: 11490 actcaaacagaaatg 11504
Score = 129 bits (65), Expect = 5e-27
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 1427 tgagctccctgctgggctgtcaagacgcatcgcctattggaaaacatttctctaagagct 1486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14330 tgagctccctgctgggctgtcaagacgcatcgcctattggaaaacatttctctaagagct 14389
Query: 1487 ggtga 1491
|||||
Sbjct: 14390 ggtga 14394
Score = 121 bits (61), Expect = 1e-24
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 339 gaagccacaaggcacgcactgggactcgaccgcgactccccagcctcccaaaccgcgggg 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10359 gaagccacaaggcacgcactgggactcgaccgcgactccccagcctcccaaaccgcgggg 10418
Query: 399 t 399
|
Sbjct: 10419 t 10419
Score = 119 bits (60), Expect = 5e-24
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 687 gcccacggggaggccctgggggacaggcgcctgcggacgctgcagataagttacgaagca 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10843 gcccacggggaggccctgggggacaggcgcctgcggacgctgcagataagttacgaagca 10902
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,311,038
Number of extensions: 284
Number of successful extensions: 284
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 9
Length of query: 1535
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1514
Effective length of database: 2,808,413,156
Effective search space: 4251937518184
Effective search space used: 4251937518184
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)