Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014231
(966 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001040012.1| high mobility group nucleosome-binding domai... 57 2e-08
Alignment gi|NP_001092415.1| non-histone chromosomal protein HMG-17 [Bos ... 55 9e-08
Alignment gi|XP_002692052.1| PREDICTED: hCG2040565-like [Bos taurus]. 54 3e-07
Alignment gi|XP_001249943.1| PREDICTED: hCG2040565-like [Bos taurus]. 54 3e-07
Alignment gi|XP_001249470.1| PREDICTED: hCG2040565-like [Bos taurus]. 54 3e-07
Alignment gi|XP_002685077.1| PREDICTED: high mobility group nucleosomal b... 52 8e-07
Alignment gi|XP_001249516.1| PREDICTED: high mobility group nucleosomal b... 52 8e-07
Alignment gi|XP_001251206.1| PREDICTED: high mobility group nucleosomal b... 52 8e-07
>ref|NP_001040012.1| high mobility group nucleosome-binding domain-containing protein 4
[Bos taurus].
Length = 90
Score = 57.0 bits (136), Expect = 2e-08
Identities = 37/90 (41%), Positives = 37/90 (41%)
Frame = +2
Query: 242 MPKRXXXXXXXXXXXXXXXEPQRRSARLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 421
MPKR EPQRRSARLS
Sbjct: 1 MPKRKAKGDAKGDKGKVKDEPQRRSARLSAKPALPKPEPRPKKAPAKKGEKLAKGRKGKA 60
Query: 422 XXXXDGNNPAKNRDASTDQSQKAESAGDAK 511
DGNNPAKNRDAST QSQKAE GDAK
Sbjct: 61 EVSKDGNNPAKNRDASTVQSQKAEGTGDAK 90
>ref|NP_001092415.1| non-histone chromosomal protein HMG-17 [Bos taurus].
Length = 90
Score = 55.1 bits (131), Expect = 9e-08
Identities = 35/90 (38%), Positives = 37/90 (41%)
Frame = +2
Query: 242 MPKRXXXXXXXXXXXXXXXEPQRRSARLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 421
MPKR EPQRRSARLS
Sbjct: 1 MPKRKAEGDAEGDKAKVKDEPQRRSARLSAKPAPPKPEPKPKKAPAKKGEKVPKGKKGKA 60
Query: 422 XXXXDGNNPAKNRDASTDQSQKAESAGDAK 511
DGNNPA+N DA TDQ+QKAE AGDAK
Sbjct: 61 DAGKDGNNPAENGDAKTDQAQKAEGAGDAK 90
>ref|XP_002692052.1| PREDICTED: hCG2040565-like [Bos taurus].
Length = 90
Score = 53.5 bits (127), Expect = 3e-07
Identities = 34/89 (38%), Positives = 37/89 (41%)
Frame = +2
Query: 242 MPKRXXXXXXXXXXXXXXXEPQRRSARLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 421
MPKR EPQRRSARLS
Sbjct: 1 MPKRKAEGDAKGDKAKVKDEPQRRSARLSAKPAPPKPEPKPKKAPAKKAEKVPKGKKGKA 60
Query: 422 XXXXDGNNPAKNRDASTDQSQKAESAGDA 508
DGNNPA+N DA TDQ+QKAE+AGDA
Sbjct: 61 DAGKDGNNPAENGDAKTDQAQKAEAAGDA 89
>ref|XP_001249943.1| PREDICTED: hCG2040565-like [Bos taurus].
Length = 90
Score = 53.5 bits (127), Expect = 3e-07
Identities = 34/89 (38%), Positives = 37/89 (41%)
Frame = +2
Query: 242 MPKRXXXXXXXXXXXXXXXEPQRRSARLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 421
MPKR EPQRRSARLS
Sbjct: 1 MPKRKAEGDAKGDKAKVKDEPQRRSARLSAKPAPPKPEPKPKKAPAKKAEKVPKGKKGKA 60
Query: 422 XXXXDGNNPAKNRDASTDQSQKAESAGDA 508
DGNNPA+N DA TDQ+QKAE+AGDA
Sbjct: 61 DAGKDGNNPAENGDAKTDQAQKAEAAGDA 89
>ref|XP_001249470.1| PREDICTED: hCG2040565-like [Bos taurus].
Length = 90
Score = 53.5 bits (127), Expect = 3e-07
Identities = 34/89 (38%), Positives = 37/89 (41%)
Frame = +2
Query: 242 MPKRXXXXXXXXXXXXXXXEPQRRSARLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 421
MPKR EPQRRSARLS
Sbjct: 1 MPKRKAEGDAKGDKAKVKDEPQRRSARLSAKPAPPKPEPKPKKAPAKKAEKVPKGKKGKA 60
Query: 422 XXXXDGNNPAKNRDASTDQSQKAESAGDA 508
DGNNPA+N DA TDQ+QKAE+AGDA
Sbjct: 61 DAGKDGNNPAENGDAKTDQAQKAEAAGDA 89
>ref|XP_002685077.1| PREDICTED: high mobility group nucleosomal binding domain 4-like
[Bos taurus].
Length = 90
Score = 52.0 bits (123), Expect = 8e-07
Identities = 35/90 (38%), Positives = 36/90 (40%)
Frame = +2
Query: 242 MPKRXXXXXXXXXXXXXXXEPQRRSARLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 421
MPKR EPQRRSARLS
Sbjct: 1 MPKRKAKGDAKDDKGKVKDEPQRRSARLSAKPALPKPEPRPKKAPAKKAEKLAKGRKGKA 60
Query: 422 XXXXDGNNPAKNRDASTDQSQKAESAGDAK 511
DGN+PAKN DAST QSQKAE GDAK
Sbjct: 61 EVGKDGNHPAKNGDASTVQSQKAEGPGDAK 90
>ref|XP_001249516.1| PREDICTED: high mobility group nucleosomal binding domain 4-like
[Bos taurus].
Length = 90
Score = 52.0 bits (123), Expect = 8e-07
Identities = 35/90 (38%), Positives = 36/90 (40%)
Frame = +2
Query: 242 MPKRXXXXXXXXXXXXXXXEPQRRSARLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 421
MPKR EPQRRSARLS
Sbjct: 1 MPKRKAKGDAKDDKGKVKDEPQRRSARLSAKPALPKPEPRPKKAPAKKAEKLAKGRKGKA 60
Query: 422 XXXXDGNNPAKNRDASTDQSQKAESAGDAK 511
DGN+PAKN DAST QSQKAE GDAK
Sbjct: 61 EVGKDGNHPAKNGDASTVQSQKAEGPGDAK 90
>ref|XP_001251206.1| PREDICTED: high mobility group nucleosomal binding domain 4-like
[Bos taurus].
Length = 90
Score = 52.0 bits (123), Expect = 8e-07
Identities = 35/90 (38%), Positives = 36/90 (40%)
Frame = +2
Query: 242 MPKRXXXXXXXXXXXXXXXEPQRRSARLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 421
MPKR EPQRRSARLS
Sbjct: 1 MPKRKAKGDAKDDKGKVKDEPQRRSARLSAKPALPKPEPRPKKAPAKKAEKLAKGRKGKA 60
Query: 422 XXXXDGNNPAKNRDASTDQSQKAESAGDAK 511
DGN+PAKN DAST QSQKAE GDAK
Sbjct: 61 EVGKDGNHPAKNGDASTVQSQKAEGPGDAK 90
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,006,097
Number of extensions: 993879
Number of successful extensions: 4157
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 4135
Number of HSP's successfully gapped: 8
Length of query: 322
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 220
Effective length of database: 14,306,398
Effective search space: 3147407560
Effective search space used: 3147407560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014231
(966 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851366.1| PREDICTED: similar to Nonhistone chromosomal pr... 64 2e-10
Alignment gi|XP_849427.1| PREDICTED: similar to Nonhistone chromosomal pr... 60 3e-09
Alignment gi|XP_850724.1| PREDICTED: similar to Nonhistone chromosomal pr... 60 4e-09
Alignment gi|NP_001003101.1| non-histone chromosomal protein HMG-17 [Cani... 55 1e-07
Alignment gi|XP_852637.1| PREDICTED: similar to Nonhistone chromosomal pr... 55 1e-07
Alignment gi|XP_852293.1| PREDICTED: similar to Nonhistone chromosomal pr... 55 1e-07
Alignment gi|XP_850784.1| PREDICTED: similar to Nonhistone chromosomal pr... 54 2e-07
Alignment gi|XP_850512.1| PREDICTED: similar to Nonhistone chromosomal pr... 52 6e-07
Alignment gi|XP_853489.1| PREDICTED: similar to Nonhistone chromosomal pr... 50 2e-06
>ref|XP_851366.1| PREDICTED: similar to Nonhistone chromosomal protein HMG-17
(High-mobility group nucleosome binding domain 2) [Canis
familiaris].
Length = 229
Score = 63.9 bits (154), Expect = 2e-10
Identities = 52/164 (31%), Positives = 61/164 (37%), Gaps = 4/164 (2%)
Frame = +2
Query: 32 PGCAGLRASLHDRRVHAGPAPAEGTCAAGRQSGAPRRSDGRETRKSF*EQ*GRQKNSLGW 211
P GL A R P P+ Q G R+D + + G K +
Sbjct: 73 PSSTGLAAGESSREDFPEPPPSA-------QGGCELRADLEQCEEEARTTPGPAKARVPP 125
Query: 212 QSHL----PSTAATMPKRXXXXXXXXXXXXXXXEPQRRSARLSXXXXXXXXXXXXXXXXX 379
H+ P+ ATMPKR EPQRRSARLS
Sbjct: 126 HPHVQRLRPAALATMPKRKAEGDAKGDKAKVKDEPQRRSARLSAKPAPPKPEPKPKNAPA 185
Query: 380 XXXXXXXXXXXXXXXXXXDGNNPAKNRDASTDQSQKAESAGDAK 511
DGNNPA+N DA TDQ+QKAE AGDAK
Sbjct: 186 KKGEKVPKGKKGKADAGKDGNNPAENGDAKTDQAQKAEGAGDAK 229
>ref|XP_849427.1| PREDICTED: similar to Nonhistone chromosomal protein HMG-17
(High-mobility group nucleosome binding domain 2) [Canis
familiaris].
Length = 271
Score = 60.1 bits (144), Expect = 3e-09
Identities = 37/96 (38%), Positives = 40/96 (41%)
Frame = +2
Query: 224 PSTAATMPKRXXXXXXXXXXXXXXXEPQRRSARLSXXXXXXXXXXXXXXXXXXXXXXXXX 403
PS TMPKR EPQRR+ARLS
Sbjct: 176 PSAVTTMPKRKAEGDAKGDKAKVKDEPQRRAARLSAKPAPPKPEPKPKKAPAKKGEKVPK 235
Query: 404 XXXXXXXXXXDGNNPAKNRDASTDQSQKAESAGDAK 511
DGNNPA+N DA TDQ+QKAE AGDAK
Sbjct: 236 GKKGKADAGKDGNNPAENGDAKTDQAQKAEGAGDAK 271
>ref|XP_850724.1| PREDICTED: similar to Nonhistone chromosomal protein HMG-17
(High-mobility group nucleosome binding domain 2) [Canis
familiaris].
Length = 107
Score = 59.7 bits (143), Expect = 4e-09
Identities = 38/96 (39%), Positives = 41/96 (42%)
Frame = +2
Query: 224 PSTAATMPKRXXXXXXXXXXXXXXXEPQRRSARLSXXXXXXXXXXXXXXXXXXXXXXXXX 403
P+T ATMPKR EPQRRSARLS
Sbjct: 12 PATVATMPKRKTEEDAKGDKAKVKDEPQRRSARLSAKPAPPKPEPKPKKAPAKKGEKVPK 71
Query: 404 XXXXXXXXXXDGNNPAKNRDASTDQSQKAESAGDAK 511
DGNN A+N DA TDQ+QKAE AGDAK
Sbjct: 72 GKKGKADAGKDGNNLAENGDAKTDQAQKAEGAGDAK 107
>ref|NP_001003101.1| non-histone chromosomal protein HMG-17 [Canis lupus familiaris].
Length = 90
Score = 55.1 bits (131), Expect = 1e-07
Identities = 35/90 (38%), Positives = 37/90 (41%)
Frame = +2
Query: 242 MPKRXXXXXXXXXXXXXXXEPQRRSARLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 421
MPKR EPQRRSARLS
Sbjct: 1 MPKRKAEGDAKGDKAKVKDEPQRRSARLSAKPAPPKPEPKPKKAPAKKGEKVPKGKKGKA 60
Query: 422 XXXXDGNNPAKNRDASTDQSQKAESAGDAK 511
DGNNPA+N DA TDQ+QKAE AGDAK
Sbjct: 61 DAGKDGNNPAENGDAKTDQAQKAEGAGDAK 90
>ref|XP_852637.1| PREDICTED: similar to Nonhistone chromosomal protein HMG-17
(High-mobility group nucleosome binding domain 2) [Canis
familiaris].
Length = 116
Score = 55.1 bits (131), Expect = 1e-07
Identities = 35/96 (36%), Positives = 38/96 (39%)
Frame = +2
Query: 224 PSTAATMPKRXXXXXXXXXXXXXXXEPQRRSARLSXXXXXXXXXXXXXXXXXXXXXXXXX 403
P+ TMPKR EPQR SARLS
Sbjct: 21 PTAVVTMPKRKAEEDAKGDKAKVKDEPQRGSARLSAKPAPPKPEPKPKKASAKKEEKVPK 80
Query: 404 XXXXXXXXXXDGNNPAKNRDASTDQSQKAESAGDAK 511
DG NPA+N DA TDQ+QKAE AGDAK
Sbjct: 81 GKKGKADAGEDGKNPAENGDAKTDQAQKAEGAGDAK 116
>ref|XP_852293.1| PREDICTED: similar to Nonhistone chromosomal protein HMG-17
(High-mobility group nucleosome binding domain 2) [Canis
familiaris].
Length = 90
Score = 55.1 bits (131), Expect = 1e-07
Identities = 35/90 (38%), Positives = 37/90 (41%)
Frame = +2
Query: 242 MPKRXXXXXXXXXXXXXXXEPQRRSARLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 421
MPKR EPQRRSARLS
Sbjct: 1 MPKRKAEGDAKGDKAKVKDEPQRRSARLSAKPAPPKPEPKPKKAPAKKGEKVPKGKKGKV 60
Query: 422 XXXXDGNNPAKNRDASTDQSQKAESAGDAK 511
DGNNPA+N DA TDQ+QKAE AGDAK
Sbjct: 61 DGGKDGNNPAENGDAKTDQAQKAEGAGDAK 90
>ref|XP_850784.1| PREDICTED: similar to Nonhistone chromosomal protein HMG-17
(High-mobility group nucleosome binding domain 2) [Canis
familiaris].
Length = 241
Score = 53.9 bits (128), Expect = 2e-07
Identities = 34/96 (35%), Positives = 39/96 (40%)
Frame = +2
Query: 224 PSTAATMPKRXXXXXXXXXXXXXXXEPQRRSARLSXXXXXXXXXXXXXXXXXXXXXXXXX 403
P+ TMPKR +PQRRSARLS
Sbjct: 146 PAAVTTMPKRKAEGDAKGDKAKVKDKPQRRSARLSAKPAPPKPEPKPKKAPARKGEKVPK 205
Query: 404 XXXXXXXXXXDGNNPAKNRDASTDQSQKAESAGDAK 511
D NNPA+N +A TDQ+QKAE AGDAK
Sbjct: 206 GKRGKADAGKDENNPAENGEAKTDQAQKAEGAGDAK 241
>ref|XP_850512.1| PREDICTED: similar to Nonhistone chromosomal protein HMG-17
(High-mobility group nucleosome binding domain 2) [Canis
familiaris].
Length = 157
Score = 52.4 bits (124), Expect = 6e-07
Identities = 34/90 (37%), Positives = 36/90 (40%)
Frame = +2
Query: 242 MPKRXXXXXXXXXXXXXXXEPQRRSARLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 421
MPKR EPQ RSARLS
Sbjct: 68 MPKRKAEGEAKGDTSKVKDEPQGRSARLSPKPTPPKPEPKPKKTPTKKGKKAPKGKKGKA 127
Query: 422 XXXXDGNNPAKNRDASTDQSQKAESAGDAK 511
DGNNPA+N DA TDQ+QKAE AGDAK
Sbjct: 128 DAGKDGNNPAENGDAKTDQAQKAEGAGDAK 157
>ref|XP_853489.1| PREDICTED: similar to Nonhistone chromosomal protein HMG-17
(High-mobility group nucleosome binding domain 2) [Canis
familiaris].
Length = 156
Score = 50.4 bits (119), Expect = 2e-06
Identities = 35/96 (36%), Positives = 38/96 (39%)
Frame = +2
Query: 224 PSTAATMPKRXXXXXXXXXXXXXXXEPQRRSARLSXXXXXXXXXXXXXXXXXXXXXXXXX 403
P+T TMPKR EPQR SA LS
Sbjct: 62 PTTVTTMPKRKAERDAKGDKAKVKDEPQR-SASLSAKPAPPKPEPKLKKAPAKKGEKVPK 120
Query: 404 XXXXXXXXXXDGNNPAKNRDASTDQSQKAESAGDAK 511
DGNNPA+N DA T Q+QKAE AGDAK
Sbjct: 121 GKKGKADAGKDGNNPAENGDAKTHQAQKAEGAGDAK 156
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,401,996
Number of extensions: 1015768
Number of successful extensions: 4503
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 4484
Number of HSP's successfully gapped: 9
Length of query: 322
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 219
Effective length of database: 15,440,896
Effective search space: 3381556224
Effective search space used: 3381556224
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014231
(966 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928288.3| PREDICTED: high mobility group nucleosome-bi... 64 2e-10
Alignment gi|XP_003356276.1| PREDICTED: non-histone chromosomal protein H... 55 6e-08
Alignment gi|XP_003127761.2| PREDICTED: non-histone chromosomal protein H... 55 6e-08
>ref|XP_001928288.3| PREDICTED: high mobility group nucleosome-binding domain-containing
protein 4-like [Sus scrofa].
Length = 90
Score = 63.5 bits (153), Expect = 2e-10
Identities = 40/90 (44%), Positives = 40/90 (44%)
Frame = +2
Query: 242 MPKRXXXXXXXXXXXXXXXEPQRRSARLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 421
MPKR EPQRRSARLS
Sbjct: 1 MPKRKAKGDAKGDKAKAKDEPQRRSARLSAKPAPPKPEPRPKKALAKKAEKLAKGRKGKA 60
Query: 422 XXXXDGNNPAKNRDASTDQSQKAESAGDAK 511
DGNNPAKNRDASTDQSQKAESAGDAK
Sbjct: 61 EGGKDGNNPAKNRDASTDQSQKAESAGDAK 90
>ref|XP_003356276.1| PREDICTED: non-histone chromosomal protein HMG-17-like isoform 2
[Sus scrofa].
Length = 90
Score = 55.1 bits (131), Expect = 6e-08
Identities = 35/90 (38%), Positives = 37/90 (41%)
Frame = +2
Query: 242 MPKRXXXXXXXXXXXXXXXEPQRRSARLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 421
MPKR EPQRRSARLS
Sbjct: 1 MPKRKAEGDAKGDKAKVKDEPQRRSARLSAKPAPPKPEPKPKKAPAKKGEKVPKGKKGKA 60
Query: 422 XXXXDGNNPAKNRDASTDQSQKAESAGDAK 511
DGNNPA+N DA TDQ+QKAE AGDAK
Sbjct: 61 DAGKDGNNPAENGDAKTDQAQKAEGAGDAK 90
>ref|XP_003127761.2| PREDICTED: non-histone chromosomal protein HMG-17-like isoform 1
[Sus scrofa].
Length = 90
Score = 55.1 bits (131), Expect = 6e-08
Identities = 35/90 (38%), Positives = 37/90 (41%)
Frame = +2
Query: 242 MPKRXXXXXXXXXXXXXXXEPQRRSARLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 421
MPKR EPQRRSARLS
Sbjct: 1 MPKRKAEGDAKGDKAKVKDEPQRRSARLSAKPAPPKPEPKPKKAPAKKGEKVPKGKKGKA 60
Query: 422 XXXXDGNNPAKNRDASTDQSQKAESAGDAK 511
DGNNPA+N DA TDQ+QKAE AGDAK
Sbjct: 61 DAGKDGNNPAENGDAKTDQAQKAEGAGDAK 90
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,202,914
Number of extensions: 639333
Number of successful extensions: 2707
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2697
Number of HSP's successfully gapped: 3
Length of query: 322
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 223
Effective length of database: 8,879,129
Effective search space: 1980045767
Effective search space used: 1980045767
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014231
(966 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001478610.1| PREDICTED: non-histone chromosomal protein H... 53 4e-07
Alignment gi|XP_003085268.1| PREDICTED: non-histone chromosomal protein H... 53 4e-07
Alignment gi|XP_001478605.1| PREDICTED: non-histone chromosomal protein H... 53 4e-07
Alignment gi|XP_003084667.1| PREDICTED: non-histone chromosomal protein H... 53 4e-07
Alignment gi|XP_003086760.1| PREDICTED: non-histone chromosomal protein H... 53 4e-07
Alignment gi|XP_003086489.1| PREDICTED: non-histone chromosomal protein H... 53 4e-07
Alignment gi|NP_058653.1| non-histone chromosomal protein HMG-17 [Mus mus... 53 4e-07
>ref|XP_001478610.1| PREDICTED: non-histone chromosomal protein HMG-17-like [Mus
musculus].
Length = 90
Score = 52.8 bits (125), Expect = 4e-07
Identities = 34/90 (37%), Positives = 36/90 (40%)
Frame = +2
Query: 242 MPKRXXXXXXXXXXXXXXXEPQRRSARLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 421
MPKR EPQRRSARLS
Sbjct: 1 MPKRKAEGDAKGDKTKVKDEPQRRSARLSAKPAPPKPEPKPKKAPSKKGEKVPKGKKGKA 60
Query: 422 XXXXDGNNPAKNRDASTDQSQKAESAGDAK 511
D NNPA+N DA TDQ+QKAE AGDAK
Sbjct: 61 DAGKDANNPAENGDAKTDQAQKAEGAGDAK 90
>ref|XP_003085268.1| PREDICTED: non-histone chromosomal protein HMG-17-like [Mus
musculus].
Length = 90
Score = 52.8 bits (125), Expect = 4e-07
Identities = 34/90 (37%), Positives = 36/90 (40%)
Frame = +2
Query: 242 MPKRXXXXXXXXXXXXXXXEPQRRSARLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 421
MPKR EPQRRSARLS
Sbjct: 1 MPKRKAEGDAKGDKTKVKDEPQRRSARLSVKPASPKPELKPKKAPAKKGEKVPKGKKGKA 60
Query: 422 XXXXDGNNPAKNRDASTDQSQKAESAGDAK 511
D NNPA+N DA TDQ+QKAE AGDAK
Sbjct: 61 NAGKDANNPAENGDAKTDQAQKAEGAGDAK 90
>ref|XP_001478605.1| PREDICTED: non-histone chromosomal protein HMG-17-like [Mus
musculus].
Length = 90
Score = 52.8 bits (125), Expect = 4e-07
Identities = 34/90 (37%), Positives = 36/90 (40%)
Frame = +2
Query: 242 MPKRXXXXXXXXXXXXXXXEPQRRSARLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 421
MPKR EPQRRSARLS
Sbjct: 1 MPKRKAEGDAKGDKTKVKDEPQRRSARLSAKPAPPKPEPKPKKAPAKKGEKVPKGKKGKA 60
Query: 422 XXXXDGNNPAKNRDASTDQSQKAESAGDAK 511
D NNPA+N DA TDQ+QKAE AGDAK
Sbjct: 61 DAGKDANNPAENGDAKTDQAQKAEGAGDAK 90
>ref|XP_003084667.1| PREDICTED: non-histone chromosomal protein HMG-17-like [Mus
musculus].
Length = 90
Score = 52.8 bits (125), Expect = 4e-07
Identities = 34/90 (37%), Positives = 36/90 (40%)
Frame = +2
Query: 242 MPKRXXXXXXXXXXXXXXXEPQRRSARLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 421
MPKR EPQRRSARLS
Sbjct: 1 MPKRKAEGDAKGDKIKVKDEPQRRSARLSAKPAPPKPEPKPKKAPAKKGEKVPKGKKGKA 60
Query: 422 XXXXDGNNPAKNRDASTDQSQKAESAGDAK 511
D NNPA+N DA TDQ+QKAE AGDAK
Sbjct: 61 DAGKDANNPAENGDAKTDQAQKAEGAGDAK 90
>ref|XP_003086760.1| PREDICTED: non-histone chromosomal protein HMG-17-like [Mus
musculus].
Length = 90
Score = 52.8 bits (125), Expect = 4e-07
Identities = 34/90 (37%), Positives = 36/90 (40%)
Frame = +2
Query: 242 MPKRXXXXXXXXXXXXXXXEPQRRSARLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 421
MPKR EPQRRSARLS
Sbjct: 1 MPKRKAEGDAKGDKTKVKDEPQRRSARLSAKPAPPKPEPKPKKAPAKKGEKVPKGKKGKA 60
Query: 422 XXXXDGNNPAKNRDASTDQSQKAESAGDAK 511
D NNPA+N DA TDQ+QKAE AGDAK
Sbjct: 61 DAGKDANNPAENGDAKTDQAQKAEGAGDAK 90
>ref|XP_003086489.1| PREDICTED: non-histone chromosomal protein HMG-17-like [Mus
musculus].
Length = 90
Score = 52.8 bits (125), Expect = 4e-07
Identities = 34/90 (37%), Positives = 36/90 (40%)
Frame = +2
Query: 242 MPKRXXXXXXXXXXXXXXXEPQRRSARLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 421
MPKR EPQRRSARLS
Sbjct: 1 MPKRKAEGDAKGDKTKVKDEPQRRSARLSAKPAPPKPEPKPKKAPAKKGEKVPKGKKGKA 60
Query: 422 XXXXDGNNPAKNRDASTDQSQKAESAGDAK 511
D NNPA+N DA TDQ+QKAE AGDAK
Sbjct: 61 DAGKDANNPAENGDAKTDQAQKAEGAGDAK 90
>ref|NP_058653.1| non-histone chromosomal protein HMG-17 [Mus musculus].
Length = 90
Score = 52.8 bits (125), Expect = 4e-07
Identities = 34/90 (37%), Positives = 36/90 (40%)
Frame = +2
Query: 242 MPKRXXXXXXXXXXXXXXXEPQRRSARLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 421
MPKR EPQRRSARLS
Sbjct: 1 MPKRKAEGDAKGDKTKVKDEPQRRSARLSAKPAPPKPEPKPKKAPAKKGEKVPKGKKGKA 60
Query: 422 XXXXDGNNPAKNRDASTDQSQKAESAGDAK 511
D NNPA+N DA TDQ+QKAE AGDAK
Sbjct: 61 DAGKDANNPAENGDAKTDQAQKAEGAGDAK 90
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,328,937
Number of extensions: 840840
Number of successful extensions: 3195
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 3174
Number of HSP's successfully gapped: 15
Length of query: 322
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 221
Effective length of database: 12,583,923
Effective search space: 2781046983
Effective search space used: 2781046983
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014231
(966 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006344.1| high mobility group nucleosome-binding domain-c... 57 3e-08
Alignment gi|NP_005508.1| non-histone chromosomal protein HMG-17 [Homo sa... 54 3e-07
>ref|NP_006344.1| high mobility group nucleosome-binding domain-containing protein 4
[Homo sapiens].
Length = 90
Score = 56.6 bits (135), Expect = 3e-08
Identities = 37/90 (41%), Positives = 37/90 (41%)
Frame = +2
Query: 242 MPKRXXXXXXXXXXXXXXXEPQRRSARLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 421
MPKR EPQRRSARLS
Sbjct: 1 MPKRKAKGDAKGDKAKVKDEPQRRSARLSAKPAPPKPEPRPKKASAKKGEKLPKGRKGKA 60
Query: 422 XXXXDGNNPAKNRDASTDQSQKAESAGDAK 511
DGNNPAKNRDAST QSQKAE GDAK
Sbjct: 61 DAGKDGNNPAKNRDASTLQSQKAEGTGDAK 90
>ref|NP_005508.1| non-histone chromosomal protein HMG-17 [Homo sapiens].
Length = 90
Score = 53.5 bits (127), Expect = 3e-07
Identities = 34/90 (37%), Positives = 37/90 (41%)
Frame = +2
Query: 242 MPKRXXXXXXXXXXXXXXXEPQRRSARLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 421
MPKR EPQRRSARLS
Sbjct: 1 MPKRKAEGDAKGDKAKVKDEPQRRSARLSAKPAPPKPEPKPKKAPAKKGEKVPKGKKGKA 60
Query: 422 XXXXDGNNPAKNRDASTDQSQKAESAGDAK 511
+GNNPA+N DA TDQ+QKAE AGDAK
Sbjct: 61 DAGKEGNNPAENGDAKTDQAQKAEGAGDAK 90
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,800,519
Number of extensions: 997841
Number of successful extensions: 3858
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3843
Number of HSP's successfully gapped: 2
Length of query: 322
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 219
Effective length of database: 14,901,872
Effective search space: 3263509968
Effective search space used: 3263509968
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014231
(966 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 1530 0.0
Sscrofa_Chr06 62 6e-07
>Sscrofa_Chr07
|| Length = 134764511
Score = 1530 bits (772), Expect = 0.0
Identities = 796/805 (98%), Gaps = 1/805 (0%)
Strand = Plus / Plus
Query: 163 gaaatctttctaggagcagtgaggaagacagaagaactccttgggctggcaaagccatct 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22163820 gaaatctttctaggagcagtgaggaagacagaagaactccttgggctggcaaagccatct 22163879
Query: 223 gccaagcactgctgccaccatgcctaagagaaaggccaaaggagatgctaaaggtgacaa 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22163880 gccaagcactgctgccaccatgcctaagagaaaggccaaaggagatgctaaaggtgacaa 22163939
Query: 283 agcaaaggcgaaagatgagccacagagaagatcggcacggttgtctgctaaacctgcccc 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22163940 agcaaaggcgaaagatgagccacagagaagatcggcacggttgtctgctaaacctgcccc 22163999
Query: 343 tccaaaaccagagcccaggccgaaaaaagcccttgcaaagaaggcagagaagctggcgaa 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22164000 tccaaaaccagagcccaggccgaaaaaagcccttgcaaagaaggcagagaagctggcgaa 22164059
Query: 403 agggagaaaggggaaagccgaaggtggcaaggatgggaacaacccagccaaaaaccgaga 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22164060 agggagaaaggggaaagccgaaggtggcaaggatgggaacaacccagccaaaaaccgaga 22164119
Query: 463 tgcctccacagaccagtcacagaaagcagaaagcgctggggatgccaagtgaagcgtact 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22164120 tgcctccacagaccagtcacagaaagcagaaagcgctggggatgccaagtgaagcgtact 22164179
Query: 523 tttcaatggctctgtacttccagtgactctactgtttgaaatactattttttacatcaaa 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22164180 tttcaatggctctgtacttccagtgactctactgtttgaaatactattttttacatcaaa 22164239
Query: 583 ttttattaaaaggtagagnnnnnnnaagttatgttattagcacacaagacactttgttgt 642
|||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 22164240 ttttattaaaaggtagagtttttttaagttatgttattagcacacaagacactttgttgt 22164299
Query: 643 ggtcttttatggaaagggcaaataaccactagtagaatgtctcagaaactggattgaaat 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22164300 ggtcttttatggaaagggcaaataaccactagtagaatgtctcagaaactggattgaaat 22164359
Query: 703 gggtgaaaataggattttctctccttgtatttgaagatttcttggttccagataccctga 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22164360 gggtgaaaataggattttctctccttgtatttgaagatttcttggttccagataccctga 22164419
Query: 763 cattcatacatggcagccactatgggtcagaggcctcatagcgtggggaagcaaaacttc 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22164420 cattcatacatggcagccactatgggtcagaggcctcatagcgtggggaagcaaaacttc 22164479
Query: 823 atttcatctcatctcctgatgccatcaggtgtctttgacttcctgaaaccaagagtcatg 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22164480 atttcatctcatctcctgatgccatcaggtgtctttgacttcctgaaaccaagagtcatg 22164539
Query: 883 acacagccttggcactgctagaatcagctgtgtcaaac-aaaataatctggctttctggt 941
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 22164540 acacagccttggcactgctagaatcagctgtgtcaaacaaaaatagtctggctttctggt 22164599
Query: 942 gatgccagcaagatggtcttgctca 966
|||||||||||||||||||||||||
Sbjct: 22164600 gatgccagcaagatggtcttgctca 22164624
Score = 323 bits (163), Expect = 1e-85
Identities = 163/163 (100%)
Strand = Plus / Plus
Query: 1 gcgcatccccgccttgccttgccttcctgttcccggctgtgccgggctccgggcgtctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22161367 gcgcatccccgccttgccttgccttcctgttcccggctgtgccgggctccgggcgtctct 22161426
Query: 61 ccacgatcgcagggttcacgccggccctgccccagccgagggcacctgcgcagcaggccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22161427 ccacgatcgcagggttcacgccggccctgccccagccgagggcacctgcgcagcaggccg 22161486
Query: 121 gcagtcgggagccccgcgccgctcggacggccgcgagactcgg 163
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22161487 gcagtcgggagccccgcgccgctcggacggccgcgagactcgg 22161529
>Sscrofa_Chr06
|| Length = 157765593
Score = 61.9 bits (31), Expect = 6e-07
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 401 aaagggagaaaggggaaagccgaaggtggcaaggatgggaacaaccc 447
||||||| ||||||||||||||| | ||||||||||||||| |||||
Sbjct: 77404798 aaagggaaaaaggggaaagccgatgctggcaaggatgggaataaccc 77404844
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,846,544
Number of extensions: 218
Number of successful extensions: 218
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 3
Length of query: 966
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 945
Effective length of database: 2,808,413,156
Effective search space: 2653950432420
Effective search space used: 2653950432420
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)