Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014243
(1314 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536339.2| PREDICTED: similar to beta-tubulin cofactor E [... 661 0.0
Alignment gi|XP_546476.2| PREDICTED: similar to leucine rich repeat conta... 109 5e-24
>ref|XP_536339.2| PREDICTED: similar to beta-tubulin cofactor E [Canis familiaris].
Length = 528
Score = 661 bits (1705), Expect = 0.0
Identities = 326/396 (82%), Positives = 352/396 (88%)
Frame = +3
Query: 126 MNDTLTSDVTGRRVEVNGEHATVRFSGIVPPVAGLWLGVEWDNPERGKHDGSHEGTVYFK 305
MNDTLTSDV GRRVEVNGEHATVRFSGIVPPVAGLWLGVEWDNPERGKHDGSH+GTVYFK
Sbjct: 1 MNDTLTSDVIGRRVEVNGEHATVRFSGIVPPVAGLWLGVEWDNPERGKHDGSHDGTVYFK 60
Query: 306 CRHPTGGSFIRPNKVNFGVDFLTAIKNRYVLXXXXXXXXXXQTVIIGNKPVETIGFDSVV 485
CRHPTGGSFIRPNKVNFGVDFLTA+KNRYVL Q +IIGNKPVETIGFDS++
Sbjct: 61 CRHPTGGSFIRPNKVNFGVDFLTAVKNRYVLEDAPEEDGKGQIIIIGNKPVETIGFDSII 120
Query: 486 KQQSQLSKLQEVSLRNCAVNGAGDKRGIAQACPNIRSIDLSKNLLSSWDDVIAIADQLKH 665
KQQSQLSKLQ++SLRNCAVN AGDK IA+ACPNIR +DLS+NLLSSWD+V+ IADQLKH
Sbjct: 121 KQQSQLSKLQDISLRNCAVNCAGDKGAIAKACPNIRKVDLSRNLLSSWDEVLDIADQLKH 180
Query: 666 LEVLNLSENKLRFPSGLPSPTGTFSMLKVLVLNRTGVTWAEVLRCASGWPVLEKLYLESN 845
LEVLNLSENKL FP + T F LK+L LNRTG+TW EVLRCASGWPVLE+LYL SN
Sbjct: 181 LEVLNLSENKLSFPLASLTLTRAFPALKILALNRTGITWVEVLRCASGWPVLEELYLASN 240
Query: 846 NIIISERPADVLQTVKLLDLSSNQLIDENQLFLIAYLPRLEQLILSDIGISSLHFPDAGI 1025
++ ISERPADVLQT+KLLDLSSNQ IDENQLFLIAYLPRLEQLILSD+GISS+HFPDA
Sbjct: 241 DLFISERPADVLQTLKLLDLSSNQSIDENQLFLIAYLPRLEQLILSDVGISSIHFPDAVA 300
Query: 1026 GCKTAMFPSLQYLVLNDNQISQWSFINELDKLQSLHALSCARNPLTEEGSKDAQTTRQFI 1205
G KT MFPSLQYL++NDNQISQWSFINELDKLQSLHALSC RNPL +EG K AQTT QFI
Sbjct: 301 GQKTLMFPSLQYLIVNDNQISQWSFINELDKLQSLHALSCTRNPLMQEG-KAAQTTHQFI 359
Query: 1206 IAKIGQLRTLQQCVIXPEERRGAELDYRKAFGNEWK 1313
IAKIGQL+TL +C I PEERRGAELDYRKAFGNEWK
Sbjct: 360 IAKIGQLKTLNKCEILPEERRGAELDYRKAFGNEWK 395
>ref|XP_546476.2| PREDICTED: similar to leucine rich repeat containing 35 [Canis
familiaris].
Length = 474
Score = 109 bits (273), Expect = 5e-24
Identities = 70/252 (27%), Positives = 128/252 (50%), Gaps = 1/252 (0%)
Frame = +3
Query: 525 LRNCAVNGAGDKRGIAQACPNIRSIDLSKNLLSSWDDVIAIADQLKHLEVLNLSENKLRF 704
L +C + AGD++ IA C ++ +DLS N L W +V I + LE LNLS N L
Sbjct: 105 LNSCGITRAGDEKEIAAFCAHVSELDLSDNKLEDWHEVSKIVSNVPQLEFLNLSSNPLNL 164
Query: 705 PSGLPSPTGTFSMLKVLVLNRTGVTWAEVLRCASGWPVLEKLYLESNNIIISERPADVLQ 884
+ G+FS ++ LVLN + +W V P LE+L+L N+ P+
Sbjct: 165 SVLERTCAGSFSGVRKLVLNNSKASWETVHTILQELPDLEELFLCLNDYETVSCPSICCH 224
Query: 885 TVKLLDLSSNQLIDENQLFLIAYL-PRLEQLILSDIGISSLHFPDAGIGCKTAMFPSLQY 1061
++KLL ++ N L D ++ + + P L+ L+L++ ++++ PD + +FP+L+
Sbjct: 225 SLKLLHITDNNLQDWTEIRKLGVMFPSLDTLVLANNHLNAIEEPDDSL---ARLFPNLRS 281
Query: 1062 LVLNDNQISQWSFINELDKLQSLHALSCARNPLTEEGSKDAQTTRQFIIAKIGQLRTLQQ 1241
+ L+ + + W I++L+ L + PL + + + + R+ +IA++ + L
Sbjct: 282 ISLHKSGLQSWEDIDKLNSFPKLEEVRLLGIPLLQPYTTEER--RKLVIARLPSVSKLNG 339
Query: 1242 CVIXPEERRGAE 1277
V+ ER +E
Sbjct: 340 SVVTDGEREDSE 351
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,022,872
Number of extensions: 1125330
Number of successful extensions: 3338
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3301
Number of HSP's successfully gapped: 2
Length of query: 438
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 332
Effective length of database: 15,340,888
Effective search space: 5093174816
Effective search space used: 5093174816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014243
(1314 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033121.1| tubulin-specific chaperone E [Bos taurus]. 705 0.0
Alignment gi|NP_001192382.1| tubulin-specific chaperone cofactor E-like p... 109 6e-24
Alignment gi|XP_002693078.1| PREDICTED: tubulin folding cofactor E-like [... 109 6e-24
Alignment gi|XP_002694210.1| PREDICTED: restin-like [Bos taurus]. 51 3e-06
Alignment gi|XP_614825.4| PREDICTED: restin-like isoform 1 [Bos taurus]. 51 3e-06
Alignment gi|NP_001178314.1| leucine-rich repeats and IQ motif containing... 50 4e-06
Alignment gi|XP_002684988.1| PREDICTED: leucine-rich repeats and IQ motif... 50 4e-06
Alignment gi|NP_001192827.1| CAP-Gly domain-containing linker protein 3 [... 50 6e-06
Alignment gi|XP_002694992.1| PREDICTED: CAP-GLY domain containing linker ... 50 6e-06
>ref|NP_001033121.1| tubulin-specific chaperone E [Bos taurus].
Length = 528
Score = 705 bits (1820), Expect = 0.0
Identities = 353/396 (89%), Positives = 366/396 (92%)
Frame = +3
Query: 126 MNDTLTSDVTGRRVEVNGEHATVRFSGIVPPVAGLWLGVEWDNPERGKHDGSHEGTVYFK 305
MN T TSDV GRRVEVNGEHATVRFSG+VPPVAGLWLGVEWDNPERGKHDGSHEGTVYFK
Sbjct: 1 MNSTSTSDVIGRRVEVNGEHATVRFSGLVPPVAGLWLGVEWDNPERGKHDGSHEGTVYFK 60
Query: 306 CRHPTGGSFIRPNKVNFGVDFLTAIKNRYVLXXXXXXXXXXQTVIIGNKPVETIGFDSVV 485
CRHPT GSFIRP+KVNFGVDFLTAIKNRYVL Q VIIGNKPVETIGFDSV+
Sbjct: 61 CRHPTAGSFIRPHKVNFGVDFLTAIKNRYVLEDEPKEEETEQIVIIGNKPVETIGFDSVI 120
Query: 486 KQQSQLSKLQEVSLRNCAVNGAGDKRGIAQACPNIRSIDLSKNLLSSWDDVIAIADQLKH 665
KQQSQLSKLQ+VSLRNCAVNGAGDK IA+ACPNIRSIDLSKNLLSSW++VI IADQLKH
Sbjct: 121 KQQSQLSKLQDVSLRNCAVNGAGDKGEIAKACPNIRSIDLSKNLLSSWEEVIDIADQLKH 180
Query: 666 LEVLNLSENKLRFPSGLPSPTGTFSMLKVLVLNRTGVTWAEVLRCASGWPVLEKLYLESN 845
LEVLNLSENKL PS PSPTGTF LKVLVLNRTGVTWAEVLRCASGWPVLEKLYLESN
Sbjct: 181 LEVLNLSENKLTSPSSSPSPTGTFPTLKVLVLNRTGVTWAEVLRCASGWPVLEKLYLESN 240
Query: 846 NIIISERPADVLQTVKLLDLSSNQLIDENQLFLIAYLPRLEQLILSDIGISSLHFPDAGI 1025
NIIISERP DVLQTVKLLDLSSNQLIDENQLFLIAYLPRLEQLILSDIGISS+HFPDAGI
Sbjct: 241 NIIISERPTDVLQTVKLLDLSSNQLIDENQLFLIAYLPRLEQLILSDIGISSIHFPDAGI 300
Query: 1026 GCKTAMFPSLQYLVLNDNQISQWSFINELDKLQSLHALSCARNPLTEEGSKDAQTTRQFI 1205
GCKT+MFPSLQYLVLNDNQI+QWSF+NELDKLQSLHALSC RNPLT EGSKDAQTTRQFI
Sbjct: 301 GCKTSMFPSLQYLVLNDNQIAQWSFMNELDKLQSLHALSCTRNPLT-EGSKDAQTTRQFI 359
Query: 1206 IAKIGQLRTLQQCVIXPEERRGAELDYRKAFGNEWK 1313
IA+IGQLRTL +C I PEERRGAELDYRKAFGNEWK
Sbjct: 360 IARIGQLRTLNKCAIEPEERRGAELDYRKAFGNEWK 395
>ref|NP_001192382.1| tubulin-specific chaperone cofactor E-like protein [Bos taurus].
Length = 424
Score = 109 bits (272), Expect = 6e-24
Identities = 70/252 (27%), Positives = 128/252 (50%), Gaps = 1/252 (0%)
Frame = +3
Query: 525 LRNCAVNGAGDKRGIAQACPNIRSIDLSKNLLSSWDDVIAIADQLKHLEVLNLSENKLRF 704
L +C + AGD++ IA C ++ +DLS N L W +V I + LE LNLS N L
Sbjct: 55 LNSCGITCAGDEKEIAAFCAHVSELDLSDNKLEDWHEVSKIVSNVPQLEFLNLSSNPLNL 114
Query: 705 PSGLPSPTGTFSMLKVLVLNRTGVTWAEVLRCASGWPVLEKLYLESNNIIISERPADVLQ 884
+ G+FS ++ LVLN + +W V P LE+L+L N+ P+
Sbjct: 115 SVLERTCAGSFSGVRKLVLNNSKASWETVHTILQELPDLEELFLCLNDYETVSCPSICCH 174
Query: 885 TVKLLDLSSNQLIDENQLFLIAYL-PRLEQLILSDIGISSLHFPDAGIGCKTAMFPSLQY 1061
++KLL ++ N L D ++ + + P L+ L+L++ ++++ PD + +FP+L+
Sbjct: 175 SLKLLHITDNNLQDWTEIRKLGVMFPSLDTLVLANNHLNAIEEPDDSL---ARLFPNLRS 231
Query: 1062 LVLNDNQISQWSFINELDKLQSLHALSCARNPLTEEGSKDAQTTRQFIIAKIGQLRTLQQ 1241
+ L+ + + W I++L+ L + PL + + + + R+ +IA++ + L
Sbjct: 232 ISLHKSGLQSWEDIDKLNSFPKLEEVRLLGIPLLQPYTTEER--RKLVIARLPSVSKLNG 289
Query: 1242 CVIXPEERRGAE 1277
V+ ER +E
Sbjct: 290 SVVTDGEREDSE 301
>ref|XP_002693078.1| PREDICTED: tubulin folding cofactor E-like [Bos taurus].
Length = 424
Score = 109 bits (272), Expect = 6e-24
Identities = 70/252 (27%), Positives = 128/252 (50%), Gaps = 1/252 (0%)
Frame = +3
Query: 525 LRNCAVNGAGDKRGIAQACPNIRSIDLSKNLLSSWDDVIAIADQLKHLEVLNLSENKLRF 704
L +C + AGD++ IA C ++ +DLS N L W +V I + LE LNLS N L
Sbjct: 55 LNSCGITCAGDEKEIAAFCAHVSELDLSDNKLEDWHEVSKIVSNVPQLEFLNLSSNPLNL 114
Query: 705 PSGLPSPTGTFSMLKVLVLNRTGVTWAEVLRCASGWPVLEKLYLESNNIIISERPADVLQ 884
+ G+FS ++ LVLN + +W V P LE+L+L N+ P+
Sbjct: 115 SVLERTCAGSFSGVRKLVLNNSKASWETVHTILQELPDLEELFLCLNDYETVSCPSICCH 174
Query: 885 TVKLLDLSSNQLIDENQLFLIAYL-PRLEQLILSDIGISSLHFPDAGIGCKTAMFPSLQY 1061
++KLL ++ N L D ++ + + P L+ L+L++ ++++ PD + +FP+L+
Sbjct: 175 SLKLLHITDNNLQDWTEIRKLGVMFPSLDTLVLANNHLNAIEEPDDSL---ARLFPNLRS 231
Query: 1062 LVLNDNQISQWSFINELDKLQSLHALSCARNPLTEEGSKDAQTTRQFIIAKIGQLRTLQQ 1241
+ L+ + + W I++L+ L + PL + + + + R+ +IA++ + L
Sbjct: 232 ISLHKSGLQSWEDIDKLNSFPKLEEVRLLGIPLLQPYTTEER--RKLVIARLPSVSKLNG 289
Query: 1242 CVIXPEERRGAE 1277
V+ ER +E
Sbjct: 290 SVVTDGEREDSE 301
>ref|XP_002694210.1| PREDICTED: restin-like [Bos taurus].
Length = 3116
Score = 50.8 bits (120), Expect = 3e-06
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = +3
Query: 126 MNDTLTSDVTGRRVEV-NGEHATVRFSGIVPPVAGLWLGVEWDNPERGKHDGSHEGTVYF 302
+ D L G RV + N + T+RF G+ G W GVE D PE G ++G+++G VYF
Sbjct: 2490 LTDELLDFHIGDRVLIGNVQPGTLRFKGVTSFAKGFWAGVELDKPE-GNNNGTYDGIVYF 2548
Query: 303 KCRHPTGGSFIRPNKVN 353
C+ G F P K++
Sbjct: 2549 VCKE-KHGIFAPPQKIS 2564
>ref|XP_614825.4| PREDICTED: restin-like isoform 1 [Bos taurus].
Length = 3116
Score = 50.8 bits (120), Expect = 3e-06
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = +3
Query: 126 MNDTLTSDVTGRRVEV-NGEHATVRFSGIVPPVAGLWLGVEWDNPERGKHDGSHEGTVYF 302
+ D L G RV + N + T+RF G+ G W GVE D PE G ++G+++G VYF
Sbjct: 2490 LTDELLDFHIGDRVLIGNVQPGTLRFKGVTSFAKGFWAGVELDKPE-GNNNGTYDGIVYF 2548
Query: 303 KCRHPTGGSFIRPNKVN 353
C+ G F P K++
Sbjct: 2549 VCKE-KHGIFAPPQKIS 2564
>ref|NP_001178314.1| leucine-rich repeats and IQ motif containing 4 [Bos taurus].
Length = 569
Score = 50.1 bits (118), Expect = 4e-06
Identities = 65/199 (32%), Positives = 92/199 (46%), Gaps = 5/199 (2%)
Frame = +3
Query: 585 NIRSIDLSKNLLSSWDDVIAIADQLKHLEVLNLSENKLRFPSGLPSPTGTFSMLKVLVL- 761
N++ +DLS+N L I LK+LEVL L +NK+ LPS G+ S LK+L L
Sbjct: 303 NLQFLDLSQNFLEHCPLQIC---SLKNLEVLALDDNKI---CQLPSDFGSLSKLKILGLT 356
Query: 762 -NRTGVTWAEVLRCASGWPVLEKLYL-ESNNIIISERPADV--LQTVKLLDLSSNQLIDE 929
N+ E+L AS LEKLY+ + ++ P + LQ +K L + +N L E
Sbjct: 357 GNQFSSFPKEILSLAS----LEKLYIGQDEGAKLTHLPECIKRLQNLKELYIENNHL--E 410
Query: 930 NQLFLIAYLPRLEQLILSDIGISSLHFPDAGIGCKTAMFPSLQYLVLNDNQISQWSFINE 1109
+ +P LE L I L PDA +L+ L DN I+
Sbjct: 411 YLPVSLGSMPNLEILDCHCNLIKQL--PDA-----ICQAQALKELRFEDNLITY--LPEN 461
Query: 1110 LDKLQSLHALSCARNPLTE 1166
LD L +L L+ NP+ E
Sbjct: 462 LDSLVNLEVLTLTGNPMEE 480
>ref|XP_002684988.1| PREDICTED: leucine-rich repeats and IQ motif containing 4 [Bos
taurus].
Length = 506
Score = 50.1 bits (118), Expect = 4e-06
Identities = 65/199 (32%), Positives = 92/199 (46%), Gaps = 5/199 (2%)
Frame = +3
Query: 585 NIRSIDLSKNLLSSWDDVIAIADQLKHLEVLNLSENKLRFPSGLPSPTGTFSMLKVLVL- 761
N++ +DLS+N L I LK+LEVL L +NK+ LPS G+ S LK+L L
Sbjct: 240 NLQFLDLSQNFLEHCPLQIC---SLKNLEVLALDDNKI---CQLPSDFGSLSKLKILGLT 293
Query: 762 -NRTGVTWAEVLRCASGWPVLEKLYL-ESNNIIISERPADV--LQTVKLLDLSSNQLIDE 929
N+ E+L AS LEKLY+ + ++ P + LQ +K L + +N L E
Sbjct: 294 GNQFSSFPKEILSLAS----LEKLYIGQDEGAKLTHLPECIKRLQNLKELYIENNHL--E 347
Query: 930 NQLFLIAYLPRLEQLILSDIGISSLHFPDAGIGCKTAMFPSLQYLVLNDNQISQWSFINE 1109
+ +P LE L I L PDA +L+ L DN I+
Sbjct: 348 YLPVSLGSMPNLEILDCHCNLIKQL--PDA-----ICQAQALKELRFEDNLITY--LPEN 398
Query: 1110 LDKLQSLHALSCARNPLTE 1166
LD L +L L+ NP+ E
Sbjct: 399 LDSLVNLEVLTLTGNPMEE 417
>ref|NP_001192827.1| CAP-Gly domain-containing linker protein 3 [Bos taurus].
Length = 547
Score = 49.7 bits (117), Expect = 6e-06
Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Frame = +3
Query: 156 GRRVEVNGEHA-TVRFSGIVPPVAGLWLGVEWDNPERGKHDGSHEGTVYFKCRHPTGGSF 332
G RV ++G+ T+RF G +G W+GVE D PE GK+DGS G YF C P G F
Sbjct: 297 GDRVLLDGQKTGTLRFCGTTEFASGQWVGVELDEPE-GKNDGSVGGVRYFIC-PPKQGLF 354
Query: 333 IRPNKVNFGVD 365
+K++ VD
Sbjct: 355 ASVSKISKAVD 365
>ref|XP_002694992.1| PREDICTED: CAP-GLY domain containing linker protein 3 [Bos taurus].
Length = 547
Score = 49.7 bits (117), Expect = 6e-06
Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Frame = +3
Query: 156 GRRVEVNGEHA-TVRFSGIVPPVAGLWLGVEWDNPERGKHDGSHEGTVYFKCRHPTGGSF 332
G RV ++G+ T+RF G +G W+GVE D PE GK+DGS G YF C P G F
Sbjct: 297 GDRVLLDGQKTGTLRFCGTTEFASGQWVGVELDEPE-GKNDGSVGGVRYFIC-PPKQGLF 354
Query: 333 IRPNKVNFGVD 365
+K++ VD
Sbjct: 355 ASVSKISKAVD 365
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,139,932
Number of extensions: 1096313
Number of successful extensions: 3358
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 3319
Number of HSP's successfully gapped: 9
Length of query: 438
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 333
Effective length of database: 14,207,134
Effective search space: 4730975622
Effective search space used: 4730975622
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014243
(1314 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003359241.1| PREDICTED: AT-rich interactive domain-contai... 65 1e-10
Alignment gi|NP_001230831.1| protein phosphatase 1, regulatory (inhibitor... 53 3e-07
>ref|XP_003359241.1| PREDICTED: AT-rich interactive domain-containing protein 4B-like
[Sus scrofa].
Length = 356
Score = 64.7 bits (156), Expect = 1e-10
Identities = 30/30 (100%), Positives = 30/30 (100%)
Frame = -1
Query: 90 CPQLARASELLPLSRVRPQTASGSGRKCFF 1
CPQLARASELLPLSRVRPQTASGSGRKCFF
Sbjct: 309 CPQLARASELLPLSRVRPQTASGSGRKCFF 338
>ref|NP_001230831.1| protein phosphatase 1, regulatory (inhibitor) subunit 7 [Sus scrofa].
Length = 360
Score = 53.1 bits (126), Expect = 3e-07
Identities = 64/266 (24%), Positives = 108/266 (40%), Gaps = 29/266 (10%)
Frame = +3
Query: 501 LSKLQEVSLRNCAVNGAGDKRGIAQACPNIRSIDLSKNLLSSWDDVIAIADQLKHLEVLN 680
L K++ + LR + G+ +A ++R +DL N + +++ A+ + LE+L+
Sbjct: 97 LRKVKTLCLRQNLIKCIGN----LEALQSLRELDLYDNQIRKIENLEALTE----LEILD 148
Query: 681 LSENKLRFPSGLPSPTG---------------TFSMLKVLVLNRTGVTWAEVLRCASGWP 815
+S N LR G+ T S L+ L + G +
Sbjct: 149 ISFNLLRSIEGVDKLTRLKKLFLVNNKINKIENLSSLRQLQMLELGSNRIRAIENVDTLT 208
Query: 816 VLEKLYLESNNIIISERPADVLQTVKLLDLSSNQLIDENQLFLIAYLPRLEQLILSDIGI 995
LE L+L N I + D L + +L + SN+L ++ + L L +L LS GI
Sbjct: 209 NLESLFLGKNKITKLQN-LDALTNLTVLSMQSNRL---TKIEGLQSLVNLRELYLSHNGI 264
Query: 996 SSLHFPDAGIGC--------------KTAMFPSLQYLVLNDNQISQWSFINELDKLQSLH 1133
+ D+ + LQ +NDN + WS ++EL +SL
Sbjct: 265 EVIEGLDSNNKLTMLDIASNRIKKIENVSHLTELQEFWMNDNLLESWSDLDELKGAKSLE 324
Query: 1134 ALSCARNPLTEEGSKDAQTTRQFIIA 1211
+ RNPL KD Q R+ ++A
Sbjct: 325 TVYLERNPL----QKDPQYRRKILLA 346
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,987,106
Number of extensions: 698309
Number of successful extensions: 2097
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2078
Number of HSP's successfully gapped: 2
Length of query: 438
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 336
Effective length of database: 8,804,438
Effective search space: 2958291168
Effective search space used: 2958291168
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014243
(1314 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_848027.1| tubulin-specific chaperone E [Mus musculus]. 565 e-161
Alignment gi|NP_766626.1| tubulin-specific chaperone cofactor E-like prot... 107 3e-23
Alignment gi|NP_001074583.1| CAP-Gly domain-containing linker protein 3 [... 50 4e-06
Alignment gi|NP_080944.2| leucine-rich repeat and IQ domain-containing pr... 49 7e-06
>ref|NP_848027.1| tubulin-specific chaperone E [Mus musculus].
Length = 524
Score = 565 bits (1455), Expect = e-161
Identities = 277/396 (69%), Positives = 328/396 (82%)
Frame = +3
Query: 126 MNDTLTSDVTGRRVEVNGEHATVRFSGIVPPVAGLWLGVEWDNPERGKHDGSHEGTVYFK 305
M+D L DV GRRVEVNGE+ATVRF G VPPVAGLWLGVEWDNPERGKHDGSHEGT+YFK
Sbjct: 1 MSDILPLDVIGRRVEVNGEYATVRFCGAVPPVAGLWLGVEWDNPERGKHDGSHEGTMYFK 60
Query: 306 CRHPTGGSFIRPNKVNFGVDFLTAIKNRYVLXXXXXXXXXXQTVIIGNKPVETIGFDSVV 485
CRHPTGGSF+RP+KVNFG DFLTA+K RYVL ++ +G+K V+TIGF+ +
Sbjct: 61 CRHPTGGSFVRPSKVNFGDDFLTALKKRYVLEDGPDDDENSCSLKVGSKQVQTIGFEHIT 120
Query: 486 KQQSQLSKLQEVSLRNCAVNGAGDKRGIAQACPNIRSIDLSKNLLSSWDDVIAIADQLKH 665
K+QSQL LQ++SL NCAV+ AG++ IA+ACPNIR ++LSKNLLS+WD+V+ IA+QLK
Sbjct: 121 KKQSQLRALQDISLWNCAVSHAGEQGRIAEACPNIRVVNLSKNLLSTWDEVVLIAEQLKD 180
Query: 666 LEVLNLSENKLRFPSGLPSPTGTFSMLKVLVLNRTGVTWAEVLRCASGWPVLEKLYLESN 845
LE L+LSENKL+FPS P+ T TFS LK LVLN+TG+TW EVL CA WPVLE+LYL+SN
Sbjct: 181 LEALDLSENKLQFPSDSPTLTRTFSTLKTLVLNKTGITWTEVLHCAPSWPVLEELYLKSN 240
Query: 846 NIIISERPADVLQTVKLLDLSSNQLIDENQLFLIAYLPRLEQLILSDIGISSLHFPDAGI 1025
NI ISERP +VLQ ++LLDLSSN IDE+QL LIA LPRLE L+LSDIG+SS+HFPDA I
Sbjct: 241 NISISERPVNVLQKMRLLDLSSNPSIDESQLSLIADLPRLEHLVLSDIGLSSIHFPDAEI 300
Query: 1026 GCKTAMFPSLQYLVLNDNQISQWSFINELDKLQSLHALSCARNPLTEEGSKDAQTTRQFI 1205
GCKT+MFP+L+YL++NDNQIS+WSFINELDKLQSL ALSC RNPL++ A + I
Sbjct: 301 GCKTSMFPALKYLIVNDNQISEWSFINELDKLQSLQALSCTRNPLSK-----ADKAEEII 355
Query: 1206 IAKIGQLRTLQQCVIXPEERRGAELDYRKAFGNEWK 1313
IAKI QLRTL +C I PEERRGAELDYRKAFGNEW+
Sbjct: 356 IAKIAQLRTLNRCQILPEERRGAELDYRKAFGNEWR 391
>ref|NP_766626.1| tubulin-specific chaperone cofactor E-like protein [Mus musculus].
Length = 424
Score = 107 bits (266), Expect = 3e-23
Identities = 69/252 (27%), Positives = 127/252 (50%), Gaps = 1/252 (0%)
Frame = +3
Query: 525 LRNCAVNGAGDKRGIAQACPNIRSIDLSKNLLSSWDDVIAIADQLKHLEVLNLSENKLRF 704
L +C + AGD+R IA C ++ +DLS N L W +V I + LE LNLS N L
Sbjct: 55 LNSCGITCAGDEREIAAFCAHVSELDLSDNKLQDWHEVSKIVSNVPQLEFLNLSSNPLSL 114
Query: 705 PSGLPSPTGTFSMLKVLVLNRTGVTWAEVLRCASGWPVLEKLYLESNNIIISERPADVLQ 884
+ G+FS ++ LVLN + +W V P LE+L+L N+ P+
Sbjct: 115 SVLERTCAGSFSGVRKLVLNNSKASWETVHTILQELPELEELFLCLNDYETVSCPSVCCH 174
Query: 885 TVKLLDLSSNQLIDENQLFLIAYL-PRLEQLILSDIGISSLHFPDAGIGCKTAMFPSLQY 1061
++KLL ++ N L D ++ + + P L+ L+L++ ++++ P + +FP+L+
Sbjct: 175 SLKLLHITDNNLQDWTEIRKLGVMFPSLDTLVLANNHLNAIEEPADSL---ARLFPNLRS 231
Query: 1062 LVLNDNQISQWSFINELDKLQSLHALSCARNPLTEEGSKDAQTTRQFIIAKIGQLRTLQQ 1241
+ L+ + + W I++L+ L + PL + + + + R+ ++A++ + L
Sbjct: 232 ISLHKSGLQSWEDIDKLNSFPKLEEVRLLGIPLLQPYTTEER--RKLVVARLPSVSKLNG 289
Query: 1242 CVIXPEERRGAE 1277
V+ ER +E
Sbjct: 290 SVVTDGEREDSE 301
>ref|NP_001074583.1| CAP-Gly domain-containing linker protein 3 [Mus musculus].
Length = 547
Score = 50.1 bits (118), Expect = 4e-06
Identities = 32/71 (45%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Frame = +3
Query: 156 GRRVEVNGEHA-TVRFSGIVPPVAGLWLGVEWDNPERGKHDGSHEGTVYFKCRHPTGGSF 332
G RV ++G+ T+RF G +G W+GVE D PE GK+DGS G YF C P G F
Sbjct: 297 GDRVLLDGQKTGTLRFCGTTEFASGQWVGVELDEPE-GKNDGSVGGVRYFIC-PPKQGLF 354
Query: 333 IRPNKVNFGVD 365
+KV+ VD
Sbjct: 355 ASVSKVSKAVD 365
>ref|NP_080944.2| leucine-rich repeat and IQ domain-containing protein 4 [Mus
musculus].
Length = 596
Score = 49.3 bits (116), Expect = 7e-06
Identities = 68/221 (30%), Positives = 104/221 (47%), Gaps = 7/221 (3%)
Frame = +3
Query: 525 LRNCAVNGAGD--KRGIAQACPNIRSIDLSKNLLSSWDDVIAIADQLKHLEVLNLSENKL 698
LRN +++G D KR I N+R +DLS+N + + I LK+LE+L L +NK+
Sbjct: 323 LRNTSLHGLRDSFKRLI-----NLRFLDLSQNHIEHFPVQICA---LKNLEILALDDNKV 374
Query: 699 RFPSGLPSPTGTFSMLKVLVLNRTGVTW--AEVLRCASGWPVLEKLYL-ESNNIIISERP 869
R LP S LK+L L + E+ S LEKLY+ + +S P
Sbjct: 375 R---QLPPSISLLSNLKILGLTGNDLLSFPEEIFSLIS----LEKLYIGQDQGSKLSSLP 427
Query: 870 ADV--LQTVKLLDLSSNQLIDENQLFLIAYLPRLEQLILSDIGISSLHFPDAGIGCKTAM 1043
++ L +K L + +N+L E + +P LE L + L PDA C+T
Sbjct: 428 ENIKRLMNLKELYIENNRL--EQLPASLGLMPNLEVLDCRHNLLKQL--PDA--ICRTR- 480
Query: 1044 FPSLQYLVLNDNQISQWSFINELDKLQSLHALSCARNPLTE 1166
+L+ L+L DN + LD L +L L+ NP+ +
Sbjct: 481 --NLRELLLEDNLLC--CLPENLDHLVNLKVLTLMNNPMVD 517
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,681,802
Number of extensions: 961203
Number of successful extensions: 2836
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2796
Number of HSP's successfully gapped: 4
Length of query: 438
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 334
Effective length of database: 12,493,815
Effective search space: 4172934210
Effective search space used: 4172934210
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014243
(1314 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001072983.1| tubulin-specific chaperone E [Homo sapiens]. 644 0.0
Alignment gi|NP_003184.1| tubulin-specific chaperone E [Homo sapiens]. 644 0.0
Alignment gi|NP_001123519.1| tubulin-specific chaperone cofactor E-like p... 109 6e-24
Alignment gi|NP_689928.3| tubulin-specific chaperone cofactor E-like prot... 109 6e-24
Alignment gi|NP_001073929.1| leucine-rich repeat and IQ domain-containing... 53 5e-07
Alignment gi|NP_001186499.1| CAP-Gly domain-containing linker protein 3 [... 50 6e-06
Alignment gi|NP_056341.1| CAP-Gly domain-containing linker protein 3 [Hom... 50 6e-06
>ref|NP_001072983.1| tubulin-specific chaperone E [Homo sapiens].
Length = 527
Score = 644 bits (1660), Expect = 0.0
Identities = 321/396 (81%), Positives = 352/396 (88%)
Frame = +3
Query: 126 MNDTLTSDVTGRRVEVNGEHATVRFSGIVPPVAGLWLGVEWDNPERGKHDGSHEGTVYFK 305
M+DTLT+DV GRRVEVNGEHATVRF+G+VPPVAG WLGVEWDNPERGKHDGSHEGTVYFK
Sbjct: 1 MSDTLTADVIGRRVEVNGEHATVRFAGVVPPVAGPWLGVEWDNPERGKHDGSHEGTVYFK 60
Query: 306 CRHPTGGSFIRPNKVNFGVDFLTAIKNRYVLXXXXXXXXXXQTVIIGNKPVETIGFDSVV 485
CRHPTGGSFIRPNKVNFG DFLTAIKNRYVL Q V IGNKPVETIGFDS++
Sbjct: 61 CRHPTGGSFIRPNKVNFGTDFLTAIKNRYVLEDGPEEDRKEQIVTIGNKPVETIGFDSIM 120
Query: 486 KQQSQLSKLQEVSLRNCAVNGAGDKRGIAQACPNIRSIDLSKNLLSSWDDVIAIADQLKH 665
KQQSQLSKLQEVSLRNCAV+ AG+K G+A+ACPNIR +DLSKNLLSSWD+VI IADQL+H
Sbjct: 121 KQQSQLSKLQEVSLRNCAVSCAGEKGGVAEACPNIRKVDLSKNLLSSWDEVIHIADQLRH 180
Query: 666 LEVLNLSENKLRFPSGLPSPTGTFSMLKVLVLNRTGVTWAEVLRCASGWPVLEKLYLESN 845
LEVLN+SENKL+FPSG TGT S+LKVLVLN+TG+TWAEVLRC +G P LE+LYLESN
Sbjct: 181 LEVLNVSENKLKFPSG-SVLTGTLSVLKVLVLNQTGITWAEVLRCVAGCPGLEELYLESN 239
Query: 846 NIIISERPADVLQTVKLLDLSSNQLIDENQLFLIAYLPRLEQLILSDIGISSLHFPDAGI 1025
NI ISERP DVLQTVKLLDLSSNQLIDENQL+LIA+LPRLEQLILSD GISSLHFPDAGI
Sbjct: 240 NIFISERPTDVLQTVKLLDLSSNQLIDENQLYLIAHLPRLEQLILSDTGISSLHFPDAGI 299
Query: 1026 GCKTAMFPSLQYLVLNDNQISQWSFINELDKLQSLHALSCARNPLTEEGSKDAQTTRQFI 1205
GCKT+MFPSL+YLV+NDNQISQWSF NEL+KL SL ALSC RNPLT+E K+A+T R I
Sbjct: 300 GCKTSMFPSLKYLVVNDNQISQWSFFNELEKLPSLRALSCLRNPLTKE-DKEAETARLLI 358
Query: 1206 IAKIGQLRTLQQCVIXPEERRGAELDYRKAFGNEWK 1313
IA IGQL+TL +C I PEERR AELDYRKAFGNEWK
Sbjct: 359 IASIGQLKTLNKCEILPEERRRAELDYRKAFGNEWK 394
>ref|NP_003184.1| tubulin-specific chaperone E [Homo sapiens].
Length = 527
Score = 644 bits (1660), Expect = 0.0
Identities = 321/396 (81%), Positives = 352/396 (88%)
Frame = +3
Query: 126 MNDTLTSDVTGRRVEVNGEHATVRFSGIVPPVAGLWLGVEWDNPERGKHDGSHEGTVYFK 305
M+DTLT+DV GRRVEVNGEHATVRF+G+VPPVAG WLGVEWDNPERGKHDGSHEGTVYFK
Sbjct: 1 MSDTLTADVIGRRVEVNGEHATVRFAGVVPPVAGPWLGVEWDNPERGKHDGSHEGTVYFK 60
Query: 306 CRHPTGGSFIRPNKVNFGVDFLTAIKNRYVLXXXXXXXXXXQTVIIGNKPVETIGFDSVV 485
CRHPTGGSFIRPNKVNFG DFLTAIKNRYVL Q V IGNKPVETIGFDS++
Sbjct: 61 CRHPTGGSFIRPNKVNFGTDFLTAIKNRYVLEDGPEEDRKEQIVTIGNKPVETIGFDSIM 120
Query: 486 KQQSQLSKLQEVSLRNCAVNGAGDKRGIAQACPNIRSIDLSKNLLSSWDDVIAIADQLKH 665
KQQSQLSKLQEVSLRNCAV+ AG+K G+A+ACPNIR +DLSKNLLSSWD+VI IADQL+H
Sbjct: 121 KQQSQLSKLQEVSLRNCAVSCAGEKGGVAEACPNIRKVDLSKNLLSSWDEVIHIADQLRH 180
Query: 666 LEVLNLSENKLRFPSGLPSPTGTFSMLKVLVLNRTGVTWAEVLRCASGWPVLEKLYLESN 845
LEVLN+SENKL+FPSG TGT S+LKVLVLN+TG+TWAEVLRC +G P LE+LYLESN
Sbjct: 181 LEVLNVSENKLKFPSG-SVLTGTLSVLKVLVLNQTGITWAEVLRCVAGCPGLEELYLESN 239
Query: 846 NIIISERPADVLQTVKLLDLSSNQLIDENQLFLIAYLPRLEQLILSDIGISSLHFPDAGI 1025
NI ISERP DVLQTVKLLDLSSNQLIDENQL+LIA+LPRLEQLILSD GISSLHFPDAGI
Sbjct: 240 NIFISERPTDVLQTVKLLDLSSNQLIDENQLYLIAHLPRLEQLILSDTGISSLHFPDAGI 299
Query: 1026 GCKTAMFPSLQYLVLNDNQISQWSFINELDKLQSLHALSCARNPLTEEGSKDAQTTRQFI 1205
GCKT+MFPSL+YLV+NDNQISQWSF NEL+KL SL ALSC RNPLT+E K+A+T R I
Sbjct: 300 GCKTSMFPSLKYLVVNDNQISQWSFFNELEKLPSLRALSCLRNPLTKE-DKEAETARLLI 358
Query: 1206 IAKIGQLRTLQQCVIXPEERRGAELDYRKAFGNEWK 1313
IA IGQL+TL +C I PEERR AELDYRKAFGNEWK
Sbjct: 359 IASIGQLKTLNKCEILPEERRRAELDYRKAFGNEWK 394
>ref|NP_001123519.1| tubulin-specific chaperone cofactor E-like protein [Homo sapiens].
Length = 424
Score = 109 bits (272), Expect = 6e-24
Identities = 70/252 (27%), Positives = 128/252 (50%), Gaps = 1/252 (0%)
Frame = +3
Query: 525 LRNCAVNGAGDKRGIAQACPNIRSIDLSKNLLSSWDDVIAIADQLKHLEVLNLSENKLRF 704
L +C + AGD++ IA C ++ +DLS N L W +V I + LE LNLS N L
Sbjct: 55 LNSCGITCAGDEKEIAAFCAHVSELDLSDNKLEDWHEVSKIVSNVPQLEFLNLSSNPLNL 114
Query: 705 PSGLPSPTGTFSMLKVLVLNRTGVTWAEVLRCASGWPVLEKLYLESNNIIISERPADVLQ 884
+ G+FS ++ LVLN + +W V P LE+L+L N+ P+
Sbjct: 115 SVLERTCAGSFSGVRKLVLNNSKASWETVHMILQELPDLEELFLCLNDYETVSCPSICCH 174
Query: 885 TVKLLDLSSNQLIDENQLFLIAYL-PRLEQLILSDIGISSLHFPDAGIGCKTAMFPSLQY 1061
++KLL ++ N L D ++ + + P L+ L+L++ ++++ PD + +FP+L+
Sbjct: 175 SLKLLHITDNNLQDWTEIRKLGVMFPSLDTLVLANNHLNAIEEPDDSL---ARLFPNLRS 231
Query: 1062 LVLNDNQISQWSFINELDKLQSLHALSCARNPLTEEGSKDAQTTRQFIIAKIGQLRTLQQ 1241
+ L+ + + W I++L+ L + PL + + + + R+ +IA++ + L
Sbjct: 232 ISLHKSGLQSWEDIDKLNSFPKLEEVRLLGIPLLQPYTTEER--RKLVIARLPSVSKLNG 289
Query: 1242 CVIXPEERRGAE 1277
V+ ER +E
Sbjct: 290 SVVTDGEREDSE 301
>ref|NP_689928.3| tubulin-specific chaperone cofactor E-like protein [Homo sapiens].
Length = 424
Score = 109 bits (272), Expect = 6e-24
Identities = 70/252 (27%), Positives = 128/252 (50%), Gaps = 1/252 (0%)
Frame = +3
Query: 525 LRNCAVNGAGDKRGIAQACPNIRSIDLSKNLLSSWDDVIAIADQLKHLEVLNLSENKLRF 704
L +C + AGD++ IA C ++ +DLS N L W +V I + LE LNLS N L
Sbjct: 55 LNSCGITCAGDEKEIAAFCAHVSELDLSDNKLEDWHEVSKIVSNVPQLEFLNLSSNPLNL 114
Query: 705 PSGLPSPTGTFSMLKVLVLNRTGVTWAEVLRCASGWPVLEKLYLESNNIIISERPADVLQ 884
+ G+FS ++ LVLN + +W V P LE+L+L N+ P+
Sbjct: 115 SVLERTCAGSFSGVRKLVLNNSKASWETVHMILQELPDLEELFLCLNDYETVSCPSICCH 174
Query: 885 TVKLLDLSSNQLIDENQLFLIAYL-PRLEQLILSDIGISSLHFPDAGIGCKTAMFPSLQY 1061
++KLL ++ N L D ++ + + P L+ L+L++ ++++ PD + +FP+L+
Sbjct: 175 SLKLLHITDNNLQDWTEIRKLGVMFPSLDTLVLANNHLNAIEEPDDSL---ARLFPNLRS 231
Query: 1062 LVLNDNQISQWSFINELDKLQSLHALSCARNPLTEEGSKDAQTTRQFIIAKIGQLRTLQQ 1241
+ L+ + + W I++L+ L + PL + + + + R+ +IA++ + L
Sbjct: 232 ISLHKSGLQSWEDIDKLNSFPKLEEVRLLGIPLLQPYTTEER--RKLVIARLPSVSKLNG 289
Query: 1242 CVIXPEERRGAE 1277
V+ ER +E
Sbjct: 290 SVVTDGEREDSE 301
>ref|NP_001073929.1| leucine-rich repeat and IQ domain-containing protein 4 [Homo
sapiens].
Length = 560
Score = 53.1 bits (126), Expect = 5e-07
Identities = 69/209 (33%), Positives = 98/209 (46%), Gaps = 7/209 (3%)
Frame = +3
Query: 561 RGIAQACPNIRSIDLSKNLLSSWDDVIAIADQLKHLEVLNLSENKLRFPSGLPSPTGTFS 740
RG + N+R +DLS+N L I LK+LEVL L +NK+ LPS G+ S
Sbjct: 296 RGSFRCLVNLRFLDLSQNHLHHCPLQICA---LKNLEVLGLDDNKI---GQLPSELGSLS 349
Query: 741 MLKVLVLNRTGVTW----AEVLRCASGWPVLEKLYL-ESNNIIISERPADV--LQTVKLL 899
LK+L L TG + EVL AS LEKLY+ + ++ P + LQ++K L
Sbjct: 350 KLKILGL--TGNEFLSFPEEVLSLAS----LEKLYIGQDQGFKLTYVPEHIRKLQSLKEL 403
Query: 900 DLSSNQLIDENQLFLIAYLPRLEQLILSDIGISSLHFPDAGIGCKTAMFPSLQYLVLNDN 1079
+ +N L E + +P LE L + L PDA +L+ L L DN
Sbjct: 404 YIENNHL--EYLPVSLGSMPNLEVLDCRHNLLKQL--PDA-----ICQAQALKELRLEDN 454
Query: 1080 QISQWSFINELDKLQSLHALSCARNPLTE 1166
++ LD L +L L+ NP+ E
Sbjct: 455 LLTH--LPENLDSLVNLKVLTLMDNPMEE 481
>ref|NP_001186499.1| CAP-Gly domain-containing linker protein 3 [Homo sapiens].
Length = 547
Score = 49.7 bits (117), Expect = 6e-06
Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Frame = +3
Query: 156 GRRVEVNGEHA-TVRFSGIVPPVAGLWLGVEWDNPERGKHDGSHEGTVYFKCRHPTGGSF 332
G RV ++G+ T+RF G +G W+GVE D PE GK+DGS G YF C P G F
Sbjct: 297 GDRVLLDGQKTGTLRFCGTTEFASGQWVGVELDEPE-GKNDGSVGGVRYFIC-PPKQGLF 354
Query: 333 IRPNKVNFGVD 365
+K++ VD
Sbjct: 355 ASVSKISKAVD 365
>ref|NP_056341.1| CAP-Gly domain-containing linker protein 3 [Homo sapiens].
Length = 547
Score = 49.7 bits (117), Expect = 6e-06
Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Frame = +3
Query: 156 GRRVEVNGEHA-TVRFSGIVPPVAGLWLGVEWDNPERGKHDGSHEGTVYFKCRHPTGGSF 332
G RV ++G+ T+RF G +G W+GVE D PE GK+DGS G YF C P G F
Sbjct: 297 GDRVLLDGQKTGTLRFCGTTEFASGQWVGVELDEPE-GKNDGSVGGVRYFIC-PPKQGLF 354
Query: 333 IRPNKVNFGVD 365
+K++ VD
Sbjct: 355 ASVSKISKAVD 365
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,384,987
Number of extensions: 1125992
Number of successful extensions: 3362
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3329
Number of HSP's successfully gapped: 7
Length of query: 438
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 332
Effective length of database: 14,802,980
Effective search space: 4914589360
Effective search space used: 4914589360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014243
(1314 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 375 e-101
>Sscrofa_Chr14
|| Length = 153851969
Score = 375 bits (189), Expect = e-101
Identities = 189/189 (100%)
Strand = Plus / Minus
Query: 308 caggcatccaacaggaggatcttttattcgtccaaacaaagtaaattttggagtagactt 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59954907 caggcatccaacaggaggatcttttattcgtccaaacaaagtaaattttggagtagactt 59954848
Query: 368 tctcactgcaattaagaatcgctatgtgttagaagatgaaccagaggaagaagaaaaaga 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59954847 tctcactgcaattaagaatcgctatgtgttagaagatgaaccagaggaagaagaaaaaga 59954788
Query: 428 gcaaactgttataattggaaataaacctgtagaaaccattggttttgactctgttgtaaa 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59954787 gcaaactgttataattggaaataaacctgtagaaaccattggttttgactctgttgtaaa 59954728
Query: 488 acaacaaag 496
|||||||||
Sbjct: 59954727 acaacaaag 59954719
Score = 274 bits (138), Expect = 1e-70
Identities = 138/138 (100%)
Strand = Plus / Plus
Query: 90 agatctcctcatattttggattctggctatgttataatgaatgacactttgacatcagat 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60012781 agatctcctcatattttggattctggctatgttataatgaatgacactttgacatcagat 60012840
Query: 150 gtcactggtcggagagttgaagttaatggagaacatgcaactgtgcgtttttctggcatt 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60012841 gtcactggtcggagagttgaagttaatggagaacatgcaactgtgcgtttttctggcatt 60012900
Query: 210 gtccctcctgtggcaggt 227
||||||||||||||||||
Sbjct: 60012901 gtccctcctgtggcaggt 60012918
Score = 180 bits (91), Expect = 1e-42
Identities = 91/91 (100%)
Strand = Plus / Minus
Query: 1 gaagaagcacttccggccagagccggaagctgtctggggccggacgcgtgagaggggcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59986406 gaagaagcacttccggccagagccggaagctgtctggggccggacgcgtgagaggggcag 59986347
Query: 61 tagctcggacgctctggccagctgcgggcag 91
|||||||||||||||||||||||||||||||
Sbjct: 59986346 tagctcggacgctctggccagctgcgggcag 59986316
Score = 176 bits (89), Expect = 2e-41
Identities = 89/89 (100%)
Strand = Plus / Minus
Query: 223 caggtctctggttaggagtagaatgggacaatcctgaaaggggaaagcatgatggaagcc 282
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Sbjct: 59968974 caggtctctggttaggagtagaatgggacaatcctgaaaggggaaagcatgatggaagcc 59968915
Query: 283 acgaagggactgtgtattttaaatgcagg 311
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Sbjct: 59968914 acgaagggactgtgtattttaaatgcagg 59968886
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 39,847,152
Number of extensions: 491
Number of successful extensions: 491
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 491
Number of HSP's successfully gapped: 4
Length of query: 1314
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1293
Effective length of database: 2,808,413,156
Effective search space: 3631278210708
Effective search space used: 3631278210708
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)