Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014251
(992 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_545993.2| PREDICTED: similar to CG8931-PA [Canis familiar... 361 e-100
>ref|XP_545993.2| PREDICTED: similar to CG8931-PA [Canis familiaris].
Length = 573
Score = 361 bits (926), Expect = e-100
Identities = 177/189 (93%), Positives = 183/189 (96%)
Frame = +2
Query: 413 QLNRFAGFGIGLASLFTENVLAHPCIVLRRQCQVNYHARHYHLTPFTVINIMYSFNKTQG 592
QLNRFAGFGIGLASLFT+ VLAHPC L RQCQVNYHARHYHLTPFTVINIMYSFNKTQG
Sbjct: 251 QLNRFAGFGIGLASLFTDFVLAHPCGGLLRQCQVNYHARHYHLTPFTVINIMYSFNKTQG 310
Query: 593 PRALWKGMGSTFIVQGVTLGAEGIISEFTPLPREISHKWNPRQIGEHLLLKSLTYIVAMP 772
PRALWKGMGSTFIVQGVTLGAEGIISEFTPLPREISHKWNP+QIGEHLLLKSLTY+VAMP
Sbjct: 311 PRALWKGMGSTFIVQGVTLGAEGIISEFTPLPREISHKWNPKQIGEHLLLKSLTYMVAMP 370
Query: 773 FYSASLIETVQSEIIRDNAGILECVKEGIGRVIGMGVPHSKRLLPLLFLIFPTVLHGVLH 952
FYSASLIETVQSEIIRDN GILEC++EGIGRVIG+GVPHSKRLLPLL LIFPTVLHGVLH
Sbjct: 371 FYSASLIETVQSEIIRDNTGILECIREGIGRVIGLGVPHSKRLLPLLSLIFPTVLHGVLH 430
Query: 953 YIISSVIQK 979
YIISSVIQK
Sbjct: 431 YIISSVIQK 439
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,157,442
Number of extensions: 843959
Number of successful extensions: 2717
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2717
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 227
Effective length of database: 15,440,896
Effective search space: 3505083392
Effective search space used: 3505083392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-014251
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014251
(992 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002689483.1| PREDICTED: solute carrier family 25, member ... 377 e-105
Alignment gi|XP_001790695.1| PREDICTED: solute carrier family 25, member ... 377 e-105
>ref|XP_002689483.1| PREDICTED: solute carrier family 25, member 46 [Bos taurus].
Length = 510
Score = 377 bits (969), Expect = e-105
Identities = 203/288 (70%), Positives = 216/288 (75%), Gaps = 10/288 (3%)
Frame = +2
Query: 149 GFDGLGYRGGARD-EQGFGGAFPARSFSSASDL--------SHWVTTPPDIPGSRNLHWG 301
G +GLG GG R +G G P R SD S + PPD P
Sbjct: 96 GGEGLGASGGWRGGPRGAAGRDPGRRRGGGSDRRPGPRRPRSRAGSRPPDPPRRSLALLS 155
Query: 302 EKSPPYGV-PAPSTPLXXXXXXXXXXXXXXXXXXXXXXQLNRFAGFGIGLASLFTENVLA 478
+P G+ P P+ L QLNRFAGFGIGLASLFTENVLA
Sbjct: 156 PSAPGAGLRPLPTRVLSGEACLSLGVAAITEE------QLNRFAGFGIGLASLFTENVLA 209
Query: 479 HPCIVLRRQCQVNYHARHYHLTPFTVINIMYSFNKTQGPRALWKGMGSTFIVQGVTLGAE 658
HPCIVLRRQCQVNYHARHYHLTPFTVINIMYSFNKTQGPRALWKGMGSTFIVQG+TLGAE
Sbjct: 210 HPCIVLRRQCQVNYHARHYHLTPFTVINIMYSFNKTQGPRALWKGMGSTFIVQGITLGAE 269
Query: 659 GIISEFTPLPREISHKWNPRQIGEHLLLKSLTYIVAMPFYSASLIETVQSEIIRDNAGIL 838
GIISEFTPLPREISHKWNP+QIGEHLLLKSLTYIVAMPFYSASLIETVQSEIIRD AGIL
Sbjct: 270 GIISEFTPLPREISHKWNPKQIGEHLLLKSLTYIVAMPFYSASLIETVQSEIIRDGAGIL 329
Query: 839 ECVKEGIGRVIGMGVPHSKRLLPLLFLIFPTVLHGVLHYIISSVIQKM 982
ECVKEGIGR IG+GVPHSKRLLPLL L+FPTVLHGVLHY+ISSV+QK+
Sbjct: 330 ECVKEGIGRAIGLGVPHSKRLLPLLSLVFPTVLHGVLHYVISSVVQKV 377
Score = 130 bits (326), Expect = 2e-30
Identities = 58/66 (87%), Positives = 60/66 (90%)
Frame = +2
Query: 146 DGFDGLGYRGGARDEQGFGGAFPARSFSSASDLSHWVTTPPDIPGSRNLHWGEKSPPYGV 325
DGFDGLGYRGGARDE GFGGAFPARSFSSASDLS WVT+PPDIPGSRNLHW E+SPP G
Sbjct: 7 DGFDGLGYRGGARDEPGFGGAFPARSFSSASDLSRWVTSPPDIPGSRNLHWAEESPPRGA 66
Query: 326 PAPSTP 343
PAP TP
Sbjct: 67 PAPCTP 72
>ref|XP_001790695.1| PREDICTED: solute carrier family 25, member 46 [Bos taurus].
Length = 510
Score = 377 bits (969), Expect = e-105
Identities = 203/288 (70%), Positives = 216/288 (75%), Gaps = 10/288 (3%)
Frame = +2
Query: 149 GFDGLGYRGGARD-EQGFGGAFPARSFSSASDL--------SHWVTTPPDIPGSRNLHWG 301
G +GLG GG R +G G P R SD S + PPD P
Sbjct: 96 GGEGLGASGGWRGGPRGAAGRDPGRRRGGGSDRRPGPRRPRSRAGSRPPDPPRRSLALLS 155
Query: 302 EKSPPYGV-PAPSTPLXXXXXXXXXXXXXXXXXXXXXXQLNRFAGFGIGLASLFTENVLA 478
+P G+ P P+ L QLNRFAGFGIGLASLFTENVLA
Sbjct: 156 PSAPGAGLRPLPTRVLSGEACLSLGVAAITEE------QLNRFAGFGIGLASLFTENVLA 209
Query: 479 HPCIVLRRQCQVNYHARHYHLTPFTVINIMYSFNKTQGPRALWKGMGSTFIVQGVTLGAE 658
HPCIVLRRQCQVNYHARHYHLTPFTVINIMYSFNKTQGPRALWKGMGSTFIVQG+TLGAE
Sbjct: 210 HPCIVLRRQCQVNYHARHYHLTPFTVINIMYSFNKTQGPRALWKGMGSTFIVQGITLGAE 269
Query: 659 GIISEFTPLPREISHKWNPRQIGEHLLLKSLTYIVAMPFYSASLIETVQSEIIRDNAGIL 838
GIISEFTPLPREISHKWNP+QIGEHLLLKSLTYIVAMPFYSASLIETVQSEIIRD AGIL
Sbjct: 270 GIISEFTPLPREISHKWNPKQIGEHLLLKSLTYIVAMPFYSASLIETVQSEIIRDGAGIL 329
Query: 839 ECVKEGIGRVIGMGVPHSKRLLPLLFLIFPTVLHGVLHYIISSVIQKM 982
ECVKEGIGR IG+GVPHSKRLLPLL L+FPTVLHGVLHY+ISSV+QK+
Sbjct: 330 ECVKEGIGRAIGLGVPHSKRLLPLLSLVFPTVLHGVLHYVISSVVQKV 377
Score = 130 bits (326), Expect = 2e-30
Identities = 58/66 (87%), Positives = 60/66 (90%)
Frame = +2
Query: 146 DGFDGLGYRGGARDEQGFGGAFPARSFSSASDLSHWVTTPPDIPGSRNLHWGEKSPPYGV 325
DGFDGLGYRGGARDE GFGGAFPARSFSSASDLS WVT+PPDIPGSRNLHW E+SPP G
Sbjct: 7 DGFDGLGYRGGARDEPGFGGAFPARSFSSASDLSRWVTSPPDIPGSRNLHWAEESPPRGA 66
Query: 326 PAPSTP 343
PAP TP
Sbjct: 67 PAPCTP 72
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 32,694,042
Number of extensions: 816940
Number of successful extensions: 2641
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2639
Number of HSP's successfully gapped: 4
Length of query: 330
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 227
Effective length of database: 14,273,310
Effective search space: 3240041370
Effective search space used: 3240041370
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014251
(992 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003123876.2| PREDICTED: solute carrier family 25 member 4... 517 e-151
>ref|XP_003123876.2| PREDICTED: solute carrier family 25 member 46-like [Sus scrofa].
Length = 491
Score = 517 bits (1332), Expect(2) = e-151
Identities = 255/279 (91%), Positives = 256/279 (91%)
Frame = +2
Query: 146 DGFDGLGYRGGARDEQGFGGAFPARSFSSASDLSHWVTTPPDIPGSRNLHWGEKSPPYGV 325
DGFDGLGYRGGARDEQGFGGAFPARSFSSASDLSHWVTTPPDIPGSRNLHWGEKSPPYGV
Sbjct: 80 DGFDGLGYRGGARDEQGFGGAFPARSFSSASDLSHWVTTPPDIPGSRNLHWGEKSPPYGV 139
Query: 326 PAPSTPLXXXXXXXXXXXXXXXXXXXXXXQLNRFAGFGIGLASLFTENVLAHPCIVLRRQ 505
PAPSTPL QLNRFAGFGIGLASLFTENVLAHPCIVLRRQ
Sbjct: 140 PAPSTPLEGPAEEPFPGGSGGSVPGQSSEQLNRFAGFGIGLASLFTENVLAHPCIVLRRQ 199
Query: 506 CQVNYHARHYHLTPFTVINIMYSFNKTQGPRALWKGMGSTFIVQGVTLGAEGIISEFTPL 685
CQVNYHARHYHLTPFTVINIMYSFNKTQGPRALWKGMGSTFIVQGVTLGAEGIISEFTPL
Sbjct: 200 CQVNYHARHYHLTPFTVINIMYSFNKTQGPRALWKGMGSTFIVQGVTLGAEGIISEFTPL 259
Query: 686 PREISHKWNPRQIGEHLLLKSLTYIVAMPFYSASLIETVQSEIIRDNAGILECVKEGIGR 865
PREISHKWNPRQIGEHLLLKSLTYIVAMPFYSASLIETVQSEIIRDNAGILECVKEGIGR
Sbjct: 260 PREISHKWNPRQIGEHLLLKSLTYIVAMPFYSASLIETVQSEIIRDNAGILECVKEGIGR 319
Query: 866 VIGMGVPHSKRLLPLLFLIFPTVLHGVLHYIISSVIQKM 982
VIGMGVPHSKRLLPLL LIFPTVLHGVLHYIISSVIQK+
Sbjct: 320 VIGMGVPHSKRLLPLLSLIFPTVLHGVLHYIISSVIQKI 358
Score = 35.0 bits (79), Expect(2) = e-151
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 6 GCQNFLGRGGGCR 44
GCQNFLGRGGGCR
Sbjct: 34 GCQNFLGRGGGCR 46
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,064,178
Number of extensions: 526102
Number of successful extensions: 1690
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1688
Number of HSP's successfully gapped: 2
Length of query: 330
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 231
Effective length of database: 8,879,129
Effective search space: 2051078799
Effective search space used: 2051078799
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014251
(992 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080441.1| solute carrier family 25 member 46 [Mus musculu... 465 e-131
>ref|NP_080441.1| solute carrier family 25 member 46 [Mus musculus].
Length = 418
Score = 465 bits (1196), Expect = e-131
Identities = 226/279 (81%), Positives = 239/279 (85%)
Frame = +2
Query: 146 DGFDGLGYRGGARDEQGFGGAFPARSFSSASDLSHWVTTPPDIPGSRNLHWGEKSPPYGV 325
+GFDGLGYRGG RD+ FGG F ARSF S ++L HWVTTPPDIPGSRNLHWGEKSP YGV
Sbjct: 7 EGFDGLGYRGGVRDDPAFGGPFHARSFGSGTELGHWVTTPPDIPGSRNLHWGEKSPSYGV 66
Query: 326 PAPSTPLXXXXXXXXXXXXXXXXXXXXXXQLNRFAGFGIGLASLFTENVLAHPCIVLRRQ 505
P+ L QLNRFAGFGIGLASLFTENVLAHPCIVLRRQ
Sbjct: 67 PSAPPTLEGSAEEPFPGGGEGPRPGPSSEQLNRFAGFGIGLASLFTENVLAHPCIVLRRQ 126
Query: 506 CQVNYHARHYHLTPFTVINIMYSFNKTQGPRALWKGMGSTFIVQGVTLGAEGIISEFTPL 685
CQVNYHARHYHLTPF++INIMYSFNKTQGPRALWKGMGSTFIVQGVTLGAEGIISEFTPL
Sbjct: 127 CQVNYHARHYHLTPFSIINIMYSFNKTQGPRALWKGMGSTFIVQGVTLGAEGIISEFTPL 186
Query: 686 PREISHKWNPRQIGEHLLLKSLTYIVAMPFYSASLIETVQSEIIRDNAGILECVKEGIGR 865
PRE+SHK NP+QIGEHLLLK LTY+VAMPFYSASLIETVQSEIIRDN GILECVKEGIGR
Sbjct: 187 PREVSHKLNPKQIGEHLLLKCLTYMVAMPFYSASLIETVQSEIIRDNTGILECVKEGIGR 246
Query: 866 VIGMGVPHSKRLLPLLFLIFPTVLHGVLHYIISSVIQKM 982
VIG+GVPHSKRLLPL LIFPTVLHGVLHYIISS+IQK+
Sbjct: 247 VIGLGVPHSKRLLPLFSLIFPTVLHGVLHYIISSIIQKI 285
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,452,650
Number of extensions: 698943
Number of successful extensions: 2249
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2248
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 228
Effective length of database: 12,553,887
Effective search space: 2862286236
Effective search space used: 2862286236
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014251
(992 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_620128.1| solute carrier family 25 member 46 [Homo sapien... 497 e-141
>ref|NP_620128.1| solute carrier family 25 member 46 [Homo sapiens].
Length = 418
Score = 497 bits (1279), Expect = e-141
Identities = 242/278 (87%), Positives = 248/278 (89%)
Frame = +2
Query: 146 DGFDGLGYRGGARDEQGFGGAFPARSFSSASDLSHWVTTPPDIPGSRNLHWGEKSPPYGV 325
DGFDGLGYRGGARDEQGFGGAFPARSFS+ SDL HWVTTPPDIPGSRNLHWGEKSPPYGV
Sbjct: 7 DGFDGLGYRGGARDEQGFGGAFPARSFSTGSDLGHWVTTPPDIPGSRNLHWGEKSPPYGV 66
Query: 326 PAPSTPLXXXXXXXXXXXXXXXXXXXXXXQLNRFAGFGIGLASLFTENVLAHPCIVLRRQ 505
P STP QLNRFAGFGIGLASLFTENVLAHPCIVLRRQ
Sbjct: 67 PTTSTPYEGPTEEPFSSGGGGSVQGQSSEQLNRFAGFGIGLASLFTENVLAHPCIVLRRQ 126
Query: 506 CQVNYHARHYHLTPFTVINIMYSFNKTQGPRALWKGMGSTFIVQGVTLGAEGIISEFTPL 685
CQVNYHA+HYHLTPFTVINIMYSFNKTQGPRALWKGMGSTFIVQGVTLGAEGIISEFTPL
Sbjct: 127 CQVNYHAQHYHLTPFTVINIMYSFNKTQGPRALWKGMGSTFIVQGVTLGAEGIISEFTPL 186
Query: 686 PREISHKWNPRQIGEHLLLKSLTYIVAMPFYSASLIETVQSEIIRDNAGILECVKEGIGR 865
PRE+ HKW+P+QIGEHLLLKSLTY+VAMPFYSASLIETVQSEIIRDN GILECVKEGIGR
Sbjct: 187 PREVLHKWSPKQIGEHLLLKSLTYVVAMPFYSASLIETVQSEIIRDNTGILECVKEGIGR 246
Query: 866 VIGMGVPHSKRLLPLLFLIFPTVLHGVLHYIISSVIQK 979
VIGMGVPHSKRLLPLL LIFPTVLHGVLHYIISSVIQK
Sbjct: 247 VIGMGVPHSKRLLPLLSLIFPTVLHGVLHYIISSVIQK 284
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,537,399
Number of extensions: 832603
Number of successful extensions: 2665
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2664
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 227
Effective length of database: 14,901,872
Effective search space: 3382724944
Effective search space used: 3382724944
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014251
(992 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 773 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 773 bits (390), Expect = 0.0
Identities = 404/406 (99%), Gaps = 2/406 (0%)
Strand = Plus / Plus
Query: 5 cggttgtcagaatttcctcggacgcggcggcggctgcagagaagaagctgtggacctcga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120019168 cggttgtcagaatttcctcggacgcggcggcggctgcagagaagaagctgtggacctcga 120019227
Query: 65 ggtcgctgtggccccagtggtggtggggtccgggtgagctcgcctcatcctgccccctct 124
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 120019228 ggtcgctgtg-ccccagtg-tggtggggtccgggtgagctcgcctcatcctgccccctct 120019285
Query: 125 gcgatgcatccgaggcgcccggacggattcgatggcttgggctatcggggcggtgcccgg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120019286 gcgatgcatccgaggcgcccggacggattcgatggcttgggctatcggggcggtgcccgg 120019345
Query: 185 gatgagcaaggctttggcggcgctttccctgcaaggtctttcagctcggcgtctgacctg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120019346 gatgagcaaggctttggcggcgctttccctgcaaggtctttcagctcggcgtctgacctg 120019405
Query: 245 agccactgggtgaccactcccccagacatcccgggtagccgcaacctgcactggggcgag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120019406 agccactgggtgaccactcccccagacatcccgggtagccgcaacctgcactggggcgag 120019465
Query: 305 aagagcccgccctacggcgtgcccgccccctccaccccgctcgagggcccagcggaggaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120019466 aagagcccgccctacggcgtgcccgccccctccaccccgctcgagggcccagcggaggaa 120019525
Query: 365 ccctttcccggaggcagcggtggtagcgtgcccgggcagagcagcg 410
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120019526 ccctttcccggaggcagcggtggtagcgtgcccgggcagagcagcg 120019571
Score = 355 bits (179), Expect = 3e-95
Identities = 189/191 (98%), Gaps = 1/191 (0%)
Strand = Plus / Plus
Query: 803 cagagtgagatcattcgagacaacgctggaattttggaatgtgttaaagaagggattgga 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120041113 cagagtgagatcattcgagacaacgctggaattttggaatgtgttaaagaagggattgga 120041172
Query: 863 agagtgataggcatgggagtgcctcatagcaaacgcctacttccgcttcttttcctgatc 922
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 120041173 agagtgataggcatgggagtgcctcatagcaaacgcctacttccgcttctttccctgatc 120041232
Query: 923 ttccctacggtgctgcatggggttcttcattacatcatcagctcagtcattcagaaaa-t 981
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 120041233 ttccctacggtgctgcatggggttcttcattacatcatcagctcagtcattcagaaaatt 120041292
Query: 982 gtcctgctcat 992
|||||||||||
Sbjct: 120041293 gtcctgctcat 120041303
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 588 agggaccaagggccctttggaaaggaatgggaagtacatttattgtccaaggagttacac 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120027940 agggaccaagggccctttggaaaggaatgggaagtacatttattgtccaaggagttacac 120027999
Query: 648 ttggagcagagggaataatcagtgaattcacacctttaccaagg 691
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120028000 ttggagcagagggaataatcagtgaattcacacctttaccaagg 120028043
Score = 161 bits (81), Expect = 9e-37
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 510 aggttaattaccatgctcggcattatcatctcactccatttacagtcatcaatattatgt 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120027212 aggttaattaccatgctcggcattatcatctcactccatttacagtcatcaatattatgt 120027271
Query: 570 acagcttcaataaaactcagg 590
|||||||||||||||||||||
Sbjct: 120027272 acagcttcaataaaactcagg 120027292
Score = 117 bits (59), Expect = 1e-23
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 689 agggagatttcacataaatggaatcctagacaaataggagaacaccttttactgaaatc 747
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120036512 agggagatttcacataaatggaatcctagacaaataggagaacaccttttactgaaatc 120036570
Score = 115 bits (58), Expect = 5e-23
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 452 agtctttttacagaaaatgtactggcccatccttgcattgttctgcgccgccagtgtcag 511
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 120023403 agtctttttacagaaaatgtactggcccatccttgcattgttctacgccgccagtgtcag 120023462
Query: 512 gt 513
||
Sbjct: 120023463 gt 120023464
Score = 115 bits (58), Expect = 5e-23
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 748 cctaacttatatagtggcaatgcctttttattcagcaagtctaattgaaacagtacag 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120038007 cctaacttatatagtggcaatgcctttttattcagcaagtctaattgaaacagtacag 120038064
Score = 87.7 bits (44), Expect = 1e-14
Identities = 44/44 (100%)
Strand = Plus / Plus
Query: 410 gaacagttgaatagatttgctggatttggtattggacttgcaag 453
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120022509 gaacagttgaatagatttgctggatttggtattggacttgcaag 120022552
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,529,832
Number of extensions: 373
Number of successful extensions: 373
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 372
Number of HSP's successfully gapped: 8
Length of query: 992
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 971
Effective length of database: 2,808,413,156
Effective search space: 2726969174476
Effective search space used: 2726969174476
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)