Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014255
(1602 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001191334.1| rho GTPase-activating protein 8 [Canis lupus... 687 0.0
Alignment gi|XP_851463.1| PREDICTED: similar to Rho-GTPase-activating pro... 585 e-167
Alignment gi|NP_001076836.1| rho GTPase-activating protein 1 [Canis lupus... 418 e-117
Alignment gi|XP_544705.2| PREDICTED: similar to BCL2/adenovirus E1B 19kD ... 107 4e-23
Alignment gi|XP_535640.2| PREDICTED: similar to Rho GTPase activating pro... 103 6e-22
Alignment gi|XP_859794.1| PREDICTED: similar to Rho GTPase activating pro... 103 6e-22
Alignment gi|XP_849790.1| PREDICTED: similar to Rho GTPase activating pro... 103 6e-22
Alignment gi|XP_850604.1| PREDICTED: similar to BNIP2 motif containing mo... 103 6e-22
Alignment gi|XP_544976.2| PREDICTED: similar to family with sequence simi... 102 1e-21
Alignment gi|XP_542168.2| PREDICTED: similar to caytaxin [Canis familiari... 100 7e-21
>ref|NP_001191334.1| rho GTPase-activating protein 8 [Canis lupus familiaris].
Length = 474
Score = 687 bits (1773), Expect = 0.0
Identities = 344/418 (82%), Positives = 365/418 (87%), Gaps = 9/418 (2%)
Frame = +1
Query: 292 QRDEEAAAALG---------TVRRPLVAPSAGPDPALSMNHPFYDVARHGILQVAGEDRL 444
QRDEE AAAL T RPLV P+AG DPALSM+HPFYDVARHGILQVAGEDR
Sbjct: 15 QRDEEEAAALSMAGRPLVMPTTGRPLVVPTAGQDPALSMDHPFYDVARHGILQVAGEDRF 74
Query: 445 GRRVVTFSCCRMPPSHELNHRRLLEYLKYTLDQYVESDYIIVYFHHGLNSRNKPSLGWLQ 624
GRRV+TFSCCRMPPSHELNHRRLL+YLK+TLDQYVESDY IVYFH+GLNS+NKPSL WLQ
Sbjct: 75 GRRVITFSCCRMPPSHELNHRRLLQYLKHTLDQYVESDYTIVYFHYGLNSQNKPSLSWLQ 134
Query: 625 SAYKEFDRRYKKNLKALYVVHPTNFIKVLWNILRPLISHKFGKKVTYFNYLSELHEHLKF 804
S YKEFDRRYKKNLKALY+VHPTNFIKVLW I +PLISHKFGKKV YFN LSEL EHLK+
Sbjct: 135 STYKEFDRRYKKNLKALYIVHPTNFIKVLWTIFKPLISHKFGKKVIYFNSLSELREHLKY 194
Query: 805 DQLIVPPEVQRHDEKLRDLHAGXXXXXXXXXXXXXXXXXQQFGVSLQYLKDKNRGELIPP 984
DQLIVPPEV R+DEKLR LH G QQFGVSLQYLKDKN+GELIPP
Sbjct: 195 DQLIVPPEVLRYDEKLRSLHKGRSSPPAKTPPPRPPLPTQQFGVSLQYLKDKNQGELIPP 254
Query: 985 VMRFTVTYLRERGLRTEGLFRRSASVQTVREIQRLYNQGKPVNFDDYGDIHVPAVIPKTF 1164
V+RFTVTYLRE+GL EGLFRRSASV T+REIQRLYNQGKPVNFDDYGDIH+PAVI KTF
Sbjct: 255 VLRFTVTYLREKGLHAEGLFRRSASVHTIREIQRLYNQGKPVNFDDYGDIHLPAVILKTF 314
Query: 1165 LRELPQPLLTFEAYEQILGITSVESSLRVTCCRQILQSLPGHNYAVLSYLMGFLHEVSQE 1344
LRELPQPLLTF+AYEQIL ITSVESSLRVT CRQILQSLP HNYAVLSYLMGFLHEVS+E
Sbjct: 315 LRELPQPLLTFKAYEQILEITSVESSLRVTRCRQILQSLPEHNYAVLSYLMGFLHEVSRE 374
Query: 1345 SIFNKMNSSNLACVFGLNLIWPSQGASSLSALVPLNLFTELLIEYYGKVFSSRQAQRE 1518
SIFNKMNSSNLACVFGLNLIWPSQGASSLSALVPLNLFTELLIEYYGKVFS+ +A+ E
Sbjct: 375 SIFNKMNSSNLACVFGLNLIWPSQGASSLSALVPLNLFTELLIEYYGKVFSAPEARGE 432
>ref|XP_851463.1| PREDICTED: similar to Rho-GTPase-activating protein 8 [Canis
familiaris].
Length = 698
Score = 585 bits (1507), Expect = e-167
Identities = 306/418 (73%), Positives = 324/418 (77%), Gaps = 9/418 (2%)
Frame = +1
Query: 292 QRDEEAAAALG---------TVRRPLVAPSAGPDPALSMNHPFYDVARHGILQVAGEDRL 444
QRDEE AAAL T RPLV P+AG DPALSM+HPFYDVARHGILQVAGEDR
Sbjct: 234 QRDEEEAAALSMAGRPLVMPTTGRPLVVPTAGQDPALSMDHPFYDVARHGILQVAGEDRF 293
Query: 445 GRRVVTFSCCRMPPSHELNHRRLLEYLKYTLDQYVESDYIIVYFHHGLNSRNKPSLGWLQ 624
GRRV+TFSCCRMPPSHELNHRRLL+Y
Sbjct: 294 GRRVITFSCCRMPPSHELNHRRLLQY---------------------------------- 319
Query: 625 SAYKEFDRRYKKNLKALYVVHPTNFIKVLWNILRPLISHKFGKKVTYFNYLSELHEHLKF 804
KKNLKALY+VHPTNFIKVLW I +PLISHKFGKKV YFN LSEL EHLK+
Sbjct: 320 ----------KKNLKALYIVHPTNFIKVLWTIFKPLISHKFGKKVIYFNSLSELREHLKY 369
Query: 805 DQLIVPPEVQRHDEKLRDLHAGXXXXXXXXXXXXXXXXXQQFGVSLQYLKDKNRGELIPP 984
DQLIVPPEV R+DEKLR LH G QQFGVSLQYLKDKN+GELIPP
Sbjct: 370 DQLIVPPEVLRYDEKLRSLHKGRSSPPAKTPPPRPPLPTQQFGVSLQYLKDKNQGELIPP 429
Query: 985 VMRFTVTYLRERGLRTEGLFRRSASVQTVREIQRLYNQGKPVNFDDYGDIHVPAVIPKTF 1164
V+RFTVTYLRE+GL EGLFRRSASV T+REIQRLYNQGKPVNFDDYGDIH+PAVI KTF
Sbjct: 430 VLRFTVTYLREKGLHAEGLFRRSASVHTIREIQRLYNQGKPVNFDDYGDIHLPAVILKTF 489
Query: 1165 LRELPQPLLTFEAYEQILGITSVESSLRVTCCRQILQSLPGHNYAVLSYLMGFLHEVSQE 1344
LRELPQPLLTF+AYEQIL ITSVESSLRVT CRQILQSLP HNYAVLSYLMGFLHEVS+E
Sbjct: 490 LRELPQPLLTFKAYEQILEITSVESSLRVTRCRQILQSLPEHNYAVLSYLMGFLHEVSRE 549
Query: 1345 SIFNKMNSSNLACVFGLNLIWPSQGASSLSALVPLNLFTELLIEYYGKVFSSRQAQRE 1518
SIFNKMNSSNLACVFGLNLIWPSQGASSLSALVPLNLFTELLIEYYGKVFS+ +A+ E
Sbjct: 550 SIFNKMNSSNLACVFGLNLIWPSQGASSLSALVPLNLFTELLIEYYGKVFSAPEARGE 607
>ref|NP_001076836.1| rho GTPase-activating protein 1 [Canis lupus familiaris].
Length = 439
Score = 418 bits (1075), Expect = e-117
Identities = 201/386 (52%), Positives = 277/386 (71%), Gaps = 3/386 (0%)
Frame = +1
Query: 352 SAGPDPA--LSMNHPFYDVARHGILQVAGEDRLGRRVVTFSCCRMPPSHELNHRRLLEYL 525
S+ P+P L + P+YD+ARH I++VAG+D+ GR+++ FS CRMPPSH+L+H +LL YL
Sbjct: 49 SSSPEPVTHLKWDDPYYDIARHQIVEVAGDDKYGRKIIVFSACRMPPSHQLDHSKLLGYL 108
Query: 526 KYTLDQYVESDYIIVYFHHGLNSRNKPSLGWLQSAYKEFDRRYKKNLKALYVVHPTNFIK 705
K+TLDQYVESDY ++Y HHGL S NKPSL WL+ AY+EFDR+YKKN+KALY+VHPT FIK
Sbjct: 109 KHTLDQYVESDYTLLYLHHGLTSDNKPSLSWLRDAYREFDRKYKKNIKALYIVHPTMFIK 168
Query: 706 VLWNILRPLISHKFGKKVTYFNYLSELHEHLKFDQLIVPPEVQRHDEKLRDLHAGXXXXX 885
L + +P+IS KFG+K+ Y NYLSEL EH+K +QL +P +V ++D+ L+
Sbjct: 169 TLLILFKPIISFKFGQKIFYVNYLSELSEHVKLEQLGIPRQVLKYDDFLKSTQKS-PATA 227
Query: 886 XXXXXXXXXXXXQQFGVSLQYLKDKN-RGELIPPVMRFTVTYLRERGLRTEGLFRRSASV 1062
QQFGVSLQ+L++KN + IP V+R T+ YL+ L TEG+FRRSA+
Sbjct: 228 PKPMPPRPPLPNQQFGVSLQHLQEKNPEQDPIPLVLRETIAYLQAHALTTEGIFRRSANT 287
Query: 1063 QTVREIQRLYNQGKPVNFDDYGDIHVPAVIPKTFLRELPQPLLTFEAYEQILGITSVESS 1242
Q VRE+Q+ YN G PV+FD Y D+H+PAVI KTFLRELP+PLLTF+ Y ++G +++ S
Sbjct: 288 QVVREVQQKYNMGLPVDFDQYNDLHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDES 347
Query: 1243 LRVTCCRQILQSLPGHNYAVLSYLMGFLHEVSQESIFNKMNSSNLACVFGLNLIWPSQGA 1422
RV Q+L++LP NY VL +L FL ++S +S NKM ++NLA VFG NL+W A
Sbjct: 348 QRVEATLQVLRTLPEENYQVLRFLTAFLVQISAQSELNKMTNTNLAVVFGPNLLWAKDAA 407
Query: 1423 SSLSALVPLNLFTELLIEYYGKVFSS 1500
+L A+ P+N FT+ L+++ G++F S
Sbjct: 408 ITLKAINPINTFTKFLLDHQGELFRS 433
>ref|XP_544705.2| PREDICTED: similar to BCL2/adenovirus E1B 19kD interacting protein
2 [Canis familiaris].
Length = 347
Score = 107 bits (266), Expect = 4e-23
Identities = 55/136 (40%), Positives = 87/136 (63%), Gaps = 4/136 (2%)
Frame = +1
Query: 454 VVTFSCCRMPPSHELNHRRLLEYL-KY---TLDQYVESDYIIVYFHHGLNSRNKPSLGWL 621
+V F+ C MP S + N+R L++ L KY TL+ V +Y+IVY + R PSLGWL
Sbjct: 188 IVVFAVCFMPESGQPNYRYLMDNLFKYVIGTLELLVAENYMIVYLNGATTRRKMPSLGWL 247
Query: 622 QSAYKEFDRRYKKNLKALYVVHPTNFIKVLWNILRPLISHKFGKKVTYFNYLSELHEHLK 801
+ Y++ DRR +KNLK+L +VHP+ FI+ L + RP IS KF +K+ Y L+EL E +
Sbjct: 248 RKCYQQIDRRLRKNLKSLIIVHPSWFIRTLLAVTRPFISSKFSQKIRYVFNLAELAELVP 307
Query: 802 FDQLIVPPEVQRHDEK 849
+ + +P +++++E+
Sbjct: 308 MEYVGIPECIKQYEEE 323
>ref|XP_535640.2| PREDICTED: similar to Rho GTPase activating protein 24 (predicted)
isoform 1 [Canis familiaris].
Length = 657
Score = 103 bits (256), Expect = 6e-22
Identities = 63/169 (37%), Positives = 93/169 (55%), Gaps = 9/169 (5%)
Frame = +1
Query: 931 GVSLQYLKDKNRGE------LIPPVMRFTVTYLRERGLRTEGLFRRSASVQTVREIQRLY 1092
G+ Q L+D R E L P ++ V ++R+RGL+ EGLFR V+E+Q +
Sbjct: 39 GIFGQKLEDTVRYEKRYGNRLAPMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDAF 98
Query: 1093 NQGKPVNFDDYGDIHVPAVIPKTFLRELPQPLLTFEAYEQILG---ITSVESSLRVTCCR 1263
+ G+ +FD D+H A + K +LRELP+P++ + YE L + S E V
Sbjct: 99 DCGEKPSFDSNTDVHTVASLLKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVKELA 158
Query: 1264 QILQSLPGHNYAVLSYLMGFLHEVSQESIFNKMNSSNLACVFGLNLIWP 1410
+ ++SLP NY +L Y+ FL EV S NKM+ NLA VFG N++ P
Sbjct: 159 KQVKSLPVVNYNLLKYICRFLDEVQSYSGVNKMSVQNLATVFGPNILRP 207
>ref|XP_859794.1| PREDICTED: similar to Rho GTPase activating protein 24 isoform 1
isoform 4 [Canis familiaris].
Length = 654
Score = 103 bits (256), Expect = 6e-22
Identities = 63/169 (37%), Positives = 93/169 (55%), Gaps = 9/169 (5%)
Frame = +1
Query: 931 GVSLQYLKDKNRGE------LIPPVMRFTVTYLRERGLRTEGLFRRSASVQTVREIQRLY 1092
G+ Q L+D R E L P ++ V ++R+RGL+ EGLFR V+E+Q +
Sbjct: 36 GIFGQKLEDTVRYEKRYGNRLAPMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDAF 95
Query: 1093 NQGKPVNFDDYGDIHVPAVIPKTFLRELPQPLLTFEAYEQILG---ITSVESSLRVTCCR 1263
+ G+ +FD D+H A + K +LRELP+P++ + YE L + S E V
Sbjct: 96 DCGEKPSFDSNTDVHTVASLLKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVKELA 155
Query: 1264 QILQSLPGHNYAVLSYLMGFLHEVSQESIFNKMNSSNLACVFGLNLIWP 1410
+ ++SLP NY +L Y+ FL EV S NKM+ NLA VFG N++ P
Sbjct: 156 KQVKSLPVVNYNLLKYICRFLDEVQSYSGVNKMSVQNLATVFGPNILRP 204
>ref|XP_849790.1| PREDICTED: similar to Rho GTPase activating protein 24 isoform 1
isoform 2 [Canis familiaris].
Length = 666
Score = 103 bits (256), Expect = 6e-22
Identities = 63/169 (37%), Positives = 93/169 (55%), Gaps = 9/169 (5%)
Frame = +1
Query: 931 GVSLQYLKDKNRGE------LIPPVMRFTVTYLRERGLRTEGLFRRSASVQTVREIQRLY 1092
G+ Q L+D R E L P ++ V ++R+RGL+ EGLFR V+E+Q +
Sbjct: 48 GIFGQKLEDTVRYEKRYGNRLAPMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDAF 107
Query: 1093 NQGKPVNFDDYGDIHVPAVIPKTFLRELPQPLLTFEAYEQILG---ITSVESSLRVTCCR 1263
+ G+ +FD D+H A + K +LRELP+P++ + YE L + S E V
Sbjct: 108 DCGEKPSFDSNTDVHTVASLLKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVKELA 167
Query: 1264 QILQSLPGHNYAVLSYLMGFLHEVSQESIFNKMNSSNLACVFGLNLIWP 1410
+ ++SLP NY +L Y+ FL EV S NKM+ NLA VFG N++ P
Sbjct: 168 KQVKSLPVVNYNLLKYICRFLDEVQSYSGVNKMSVQNLATVFGPNILRP 216
>ref|XP_850604.1| PREDICTED: similar to BNIP2 motif containing molecule at the carboxyl
terminal region 1 [Canis familiaris].
Length = 3077
Score = 103 bits (256), Expect = 6e-22
Identities = 49/136 (36%), Positives = 79/136 (58%), Gaps = 4/136 (2%)
Frame = +1
Query: 454 VVTFSCCRMPPSHELNHRRLLE----YLKYTLDQYVESDYIIVYFHHGLNSRNKPSLGWL 621
++ F+ C +P S ++ ++E Y+ TL+ V DY+IVY + R P LGW+
Sbjct: 2925 IIVFAACFLPDSSRADYHYVMENLFLYVISTLELMVAEDYMIVYLNGATPRRKMPGLGWM 2984
Query: 622 QSAYKEFDRRYKKNLKALYVVHPTNFIKVLWNILRPLISHKFGKKVTYFNYLSELHEHLK 801
+ Y+ DRR +KNLK+ +VHP+ FI+ + + RP IS KF K+ Y N LSEL +
Sbjct: 2985 KKCYQMIDRRLRKNLKSFIIVHPSWFIRTILAVTRPFISSKFSSKIKYVNSLSELSGLIP 3044
Query: 802 FDQLIVPPEVQRHDEK 849
D + +P + ++DE+
Sbjct: 3045 MDCIHIPESIIKYDEE 3060
>ref|XP_544976.2| PREDICTED: similar to family with sequence similarity 13, member A1
isoform a [Canis familiaris].
Length = 1033
Score = 102 bits (253), Expect = 1e-21
Identities = 63/199 (31%), Positives = 101/199 (50%), Gaps = 2/199 (1%)
Frame = +1
Query: 928 FGVSLQYLKDKNRGEL-IPPVMRFTVTYLRERGLRTEGLFRRSASVQTVREIQRLYNQGK 1104
FGVSLQ L+ + E IP ++ V YL + GL EGLFR + +V+ V +++ + G
Sbjct: 51 FGVSLQDLQQQGLTENGIPAIVGTLVDYLTKHGLTQEGLFRVNGNVKVVEQLRWKFESGA 110
Query: 1105 PVNFDDYGDIHVPAVIPKTFLRELPQPLLTFEAYEQILGITSVE-SSLRVTCCRQILQSL 1281
PV GD+ A + K FLRELP+ ++T Y + + + + + + R +++ L
Sbjct: 111 PVELGKDGDVCSAASLLKLFLRELPESVITSTLYPRFIQLFQDDRNDAQENSLRDLIKEL 170
Query: 1282 PGHNYAVLSYLMGFLHEVSQESIFNKMNSSNLACVFGLNLIWPSQGASSLSALVPLNLFT 1461
P +Y +L YL FL +V++ + N+MN NLA VFG N G + N
Sbjct: 171 PDTHYCLLKYLCQFLTKVAKHHVENRMNVHNLATVFGPNCFHVPPGLEGMKEQDICNKIM 230
Query: 1462 ELLIEYYGKVFSSRQAQRE 1518
L+E Y +F + +
Sbjct: 231 AKLLENYNTLFEVEHTEND 249
>ref|XP_542168.2| PREDICTED: similar to caytaxin [Canis familiaris].
Length = 358
Score = 99.8 bits (247), Expect = 7e-21
Identities = 58/187 (31%), Positives = 98/187 (52%), Gaps = 4/187 (2%)
Frame = +1
Query: 301 EEAAAALGTVRRPLVAPSAGPDPALSMNHPFYDVARHGILQVAGEDRLGRRVVTFSCCRM 480
E+ AA G + R ++ L M P+ V HG G + ++ F+ C +
Sbjct: 144 EDGGAANGRLWRTVIIGEQEHRIDLHMIRPYMRVVTHGGYYGEGLNA----IIVFAACFL 199
Query: 481 PPSHELNHRRLLE----YLKYTLDQYVESDYIIVYFHHGLNSRNKPSLGWLQSAYKEFDR 648
P S ++ ++E Y+ +L+ V DY+IVY + R P +GWL+ Y+ DR
Sbjct: 200 PDSSSPDYHYIMENLFLYVISSLELLVAEDYMIVYLNGATPRRRMPGIGWLKKCYQMIDR 259
Query: 649 RYKKNLKALYVVHPTNFIKVLWNILRPLISHKFGKKVTYFNYLSELHEHLKFDQLIVPPE 828
R +KNLK+L +VHP+ FI+ + I RP IS KF K+ Y + L +L + + + + +P
Sbjct: 260 RLRKNLKSLIIVHPSWFIRTVLAISRPFISVKFINKIQYVHSLEDLEQLIPMEHVQIPDC 319
Query: 829 VQRHDEK 849
V +++E+
Sbjct: 320 VLQYEEE 326
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 61,427,189
Number of extensions: 1742529
Number of successful extensions: 9344
Number of sequences better than 1.0e-05: 103
Number of HSP's gapped: 9213
Number of HSP's successfully gapped: 106
Length of query: 534
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 426
Effective length of database: 15,274,216
Effective search space: 6506816016
Effective search space used: 6506816016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-014255
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014255
(1602 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001179991.1| rho GTPase-activating protein 1 [Bos taurus]. 410 e-114
Alignment gi|XP_002693580.1| PREDICTED: Rho GTPase activating protein 1 [... 410 e-114
Alignment gi|NP_001035624.2| BCL2/adenovirus E1B 19kD interacting protein... 107 4e-23
Alignment gi|XP_002699031.1| PREDICTED: Rho GTPase activating protein 25-... 104 3e-22
Alignment gi|XP_585898.4| PREDICTED: Rho GTPase activating protein 25-lik... 104 3e-22
Alignment gi|NP_001095704.1| rho GTPase-activating protein 24 [Bos taurus]. 103 4e-22
Alignment gi|NP_001075898.1| caytaxin [Bos taurus]. 100 5e-21
Alignment gi|NP_001073089.1| bcl-2/adenovirus E1B 19 kDa-interacting prot... 96 9e-20
Alignment gi|XP_001251291.1| PREDICTED: family with sequence similarity 1... 94 3e-19
Alignment gi|XP_002687966.1| PREDICTED: SH3-domain binding protein 1-like... 92 1e-18
>ref|NP_001179991.1| rho GTPase-activating protein 1 [Bos taurus].
Length = 439
Score = 410 bits (1053), Expect = e-114
Identities = 201/390 (51%), Positives = 273/390 (70%), Gaps = 3/390 (0%)
Frame = +1
Query: 352 SAGPDPA--LSMNHPFYDVARHGILQVAGEDRLGRRVVTFSCCRMPPSHELNHRRLLEYL 525
S+ P+P L + P+YD+ARH I++VAG+D+ GR+++ FS CRMPPSH+L+H +LL YL
Sbjct: 49 SSSPEPVTHLKWDDPYYDIARHQIVEVAGDDKYGRKIIVFSACRMPPSHQLDHSKLLGYL 108
Query: 526 KYTLDQYVESDYIIVYFHHGLNSRNKPSLGWLQSAYKEFDRRYKKNLKALYVVHPTNFIK 705
K+TLDQYVESDY ++Y HHGL S NKPS WL+ AY+EFDR+YKKN+KALY+VHPT FIK
Sbjct: 109 KHTLDQYVESDYTLLYLHHGLTSDNKPSFSWLRDAYREFDRKYKKNIKALYIVHPTMFIK 168
Query: 706 VLWNILRPLISHKFGKKVTYFNYLSELHEHLKFDQLIVPPEVQRHDEKLRDLHAGXXXXX 885
L + +P+IS KFG+K+ Y NYLSEL EH+K +QL +P +V ++D+ L+
Sbjct: 169 TLLILFKPIISFKFGQKIFYVNYLSELSEHVKLEQLGIPRQVLKYDDFLKSTQKS-PATA 227
Query: 886 XXXXXXXXXXXXQQFGVSLQYLKDKN-RGELIPPVMRFTVTYLRERGLRTEGLFRRSASV 1062
QQFGVSLQ L++KN + IP V+R TV YLR L TEG+FRRSA+
Sbjct: 228 PKPMPPRPPLPNQQFGVSLQQLREKNPEQQPIPLVLRETVAYLRAHALTTEGIFRRSANT 287
Query: 1063 QTVREIQRLYNQGKPVNFDDYGDIHVPAVIPKTFLRELPQPLLTFEAYEQILGITSVESS 1242
Q VRE+Q YN G V+F+ Y ++H+PAVI KTFLRELP+PLLTF+ Y ++G +++ S
Sbjct: 288 QVVREVQHKYNMGLSVDFEQYNELHLPAVILKTFLRELPEPLLTFDLYSHVVGFLNIDES 347
Query: 1243 LRVTCCRQILQSLPGHNYAVLSYLMGFLHEVSQESIFNKMNSSNLACVFGLNLIWPSQGA 1422
RV Q LQ+LP NY VL +L FL ++S S NKM ++NLA VFG NL+W A
Sbjct: 348 QRVKATLQALQTLPEENYLVLRFLTAFLVQISALSDQNKMTNTNLAVVFGPNLLWAKDAA 407
Query: 1423 SSLSALVPLNLFTELLIEYYGKVFSSRQAQ 1512
+L A+ P+N FT+ L+++ G++F S A+
Sbjct: 408 ITLKAINPINTFTKFLLDHQGELFPSPDAK 437
>ref|XP_002693580.1| PREDICTED: Rho GTPase activating protein 1 [Bos taurus].
Length = 439
Score = 410 bits (1053), Expect = e-114
Identities = 201/390 (51%), Positives = 273/390 (70%), Gaps = 3/390 (0%)
Frame = +1
Query: 352 SAGPDPA--LSMNHPFYDVARHGILQVAGEDRLGRRVVTFSCCRMPPSHELNHRRLLEYL 525
S+ P+P L + P+YD+ARH I++VAG+D+ GR+++ FS CRMPPSH+L+H +LL YL
Sbjct: 49 SSSPEPVTHLKWDDPYYDIARHQIVEVAGDDKYGRKIIVFSACRMPPSHQLDHSKLLGYL 108
Query: 526 KYTLDQYVESDYIIVYFHHGLNSRNKPSLGWLQSAYKEFDRRYKKNLKALYVVHPTNFIK 705
K+TLDQYVESDY ++Y HHGL S NKPS WL+ AY+EFDR+YKKN+KALY+VHPT FIK
Sbjct: 109 KHTLDQYVESDYTLLYLHHGLTSDNKPSFSWLRDAYREFDRKYKKNIKALYIVHPTMFIK 168
Query: 706 VLWNILRPLISHKFGKKVTYFNYLSELHEHLKFDQLIVPPEVQRHDEKLRDLHAGXXXXX 885
L + +P+IS KFG+K+ Y NYLSEL EH+K +QL +P +V ++D+ L+
Sbjct: 169 TLLILFKPIISFKFGQKIFYVNYLSELSEHVKLEQLGIPRQVLKYDDFLKSTQKS-PATA 227
Query: 886 XXXXXXXXXXXXQQFGVSLQYLKDKN-RGELIPPVMRFTVTYLRERGLRTEGLFRRSASV 1062
QQFGVSLQ L++KN + IP V+R TV YLR L TEG+FRRSA+
Sbjct: 228 PKPMPPRPPLPNQQFGVSLQQLREKNPEQQPIPLVLRETVAYLRAHALTTEGIFRRSANT 287
Query: 1063 QTVREIQRLYNQGKPVNFDDYGDIHVPAVIPKTFLRELPQPLLTFEAYEQILGITSVESS 1242
Q VRE+Q YN G V+F+ Y ++H+PAVI KTFLRELP+PLLTF+ Y ++G +++ S
Sbjct: 288 QVVREVQHKYNMGLSVDFEQYNELHLPAVILKTFLRELPEPLLTFDLYSHVVGFLNIDES 347
Query: 1243 LRVTCCRQILQSLPGHNYAVLSYLMGFLHEVSQESIFNKMNSSNLACVFGLNLIWPSQGA 1422
RV Q LQ+LP NY VL +L FL ++S S NKM ++NLA VFG NL+W A
Sbjct: 348 QRVKATLQALQTLPEENYLVLRFLTAFLVQISALSDQNKMTNTNLAVVFGPNLLWAKDAA 407
Query: 1423 SSLSALVPLNLFTELLIEYYGKVFSSRQAQ 1512
+L A+ P+N FT+ L+++ G++F S A+
Sbjct: 408 ITLKAINPINTFTKFLLDHQGELFPSPDAK 437
>ref|NP_001035624.2| BCL2/adenovirus E1B 19kD interacting protein 2 [Bos taurus].
Length = 314
Score = 107 bits (266), Expect = 4e-23
Identities = 56/137 (40%), Positives = 87/137 (63%), Gaps = 4/137 (2%)
Frame = +1
Query: 454 VVTFSCCRMPPSHELNHRRLLEYL-KY---TLDQYVESDYIIVYFHHGLNSRNKPSLGWL 621
+V F+ C MP S + N+R L++ L KY TL+ V +Y+IVY + R PSLGWL
Sbjct: 167 IVVFAVCFMPESGQPNYRYLMDNLFKYVIGTLELLVAENYMIVYLNGATTRRKMPSLGWL 226
Query: 622 QSAYKEFDRRYKKNLKALYVVHPTNFIKVLWNILRPLISHKFGKKVTYFNYLSELHEHLK 801
+ Y++ DRR +KNLK+L +VHP+ FI+ L + RP IS KF +K+ Y L+EL E +
Sbjct: 227 RKCYQQIDRRLRKNLKSLIIVHPSWFIRTLLAVTRPFISSKFSQKIRYVFNLAELAELVP 286
Query: 802 FDQLIVPPEVQRHDEKL 852
+ + +P +++ D++L
Sbjct: 287 MEYVGIPECIKQVDQEL 303
>ref|XP_002699031.1| PREDICTED: Rho GTPase activating protein 25-like [Bos taurus].
Length = 720
Score = 104 bits (259), Expect = 3e-22
Identities = 67/187 (35%), Positives = 100/187 (53%), Gaps = 7/187 (3%)
Frame = +1
Query: 973 LIPPVMRFTVTYLRERGLRTEGLFRRSASVQTVREIQRLYNQGKPVNFDDYGDIHVPAVI 1152
L P ++ V ++RERGL EGLFR VR++Q ++ G+ FD D+H A +
Sbjct: 185 LAPLLVEQCVDFIRERGLSEEGLFRMPGQANLVRDLQDSFDCGEKPRFDSTTDVHTVASL 244
Query: 1153 PKTFLRELPQPLLTFEAYEQILG----ITSVESSLRVTCCRQILQSLPGHNYAVLSYLMG 1320
K +LRELP+P++ F YE L +T E + +Q+ SLP NY +L Y+
Sbjct: 245 LKLYLRELPEPVVPFARYEDFLNCAQLLTKDEGEGTLELAKQV-SSLPLVNYNLLRYICK 303
Query: 1321 FLHEVSQESIFNKMNSSNLACVFGLNLIWPSQGASSLSALVPLNLFTEL---LIEYYGKV 1491
FL EV S NKM+ NLA VFG N++ P Q ++ + +L L LI + ++
Sbjct: 304 FLDEVQSHSDVNKMSVQNLATVFGPNILRP-QREDPVTIMEGTSLVQHLMTILIRKHSQL 362
Query: 1492 FSSRQAQ 1512
F+SR +
Sbjct: 363 FTSRTTE 369
>ref|XP_585898.4| PREDICTED: Rho GTPase activating protein 25-like [Bos taurus].
Length = 720
Score = 104 bits (259), Expect = 3e-22
Identities = 67/187 (35%), Positives = 100/187 (53%), Gaps = 7/187 (3%)
Frame = +1
Query: 973 LIPPVMRFTVTYLRERGLRTEGLFRRSASVQTVREIQRLYNQGKPVNFDDYGDIHVPAVI 1152
L P ++ V ++RERGL EGLFR VR++Q ++ G+ FD D+H A +
Sbjct: 185 LAPLLVEQCVDFIRERGLSEEGLFRMPGQANLVRDLQDSFDCGEKPRFDSTTDVHTVASL 244
Query: 1153 PKTFLRELPQPLLTFEAYEQILG----ITSVESSLRVTCCRQILQSLPGHNYAVLSYLMG 1320
K +LRELP+P++ F YE L +T E + +Q+ SLP NY +L Y+
Sbjct: 245 LKLYLRELPEPVVPFARYEDFLNCAQLLTKDEGEGTLELAKQV-SSLPLVNYNLLRYICK 303
Query: 1321 FLHEVSQESIFNKMNSSNLACVFGLNLIWPSQGASSLSALVPLNLFTEL---LIEYYGKV 1491
FL EV S NKM+ NLA VFG N++ P Q ++ + +L L LI + ++
Sbjct: 304 FLDEVQSHSDVNKMSVQNLATVFGPNILRP-QREDPVTIMEGTSLVQHLMTILIRKHSQL 362
Query: 1492 FSSRQAQ 1512
F+SR +
Sbjct: 363 FTSRTTE 369
>ref|NP_001095704.1| rho GTPase-activating protein 24 [Bos taurus].
Length = 654
Score = 103 bits (257), Expect = 4e-22
Identities = 63/169 (37%), Positives = 93/169 (55%), Gaps = 9/169 (5%)
Frame = +1
Query: 931 GVSLQYLKDKNRGE------LIPPVMRFTVTYLRERGLRTEGLFRRSASVQTVREIQRLY 1092
G+ Q L+D R E L P ++ V ++R+RGL+ EGLFR V+E+Q +
Sbjct: 36 GIFGQKLEDTVRYEKRYGNRLAPMLVEQCVDFIRQRGLKEEGLFRLPGQTNLVKELQDAF 95
Query: 1093 NQGKPVNFDDYGDIHVPAVIPKTFLRELPQPLLTFEAYEQILG---ITSVESSLRVTCCR 1263
+ G+ +FD D+H A + K +LRELP+P++ + YE L + S E V
Sbjct: 96 DCGEKPSFDSNTDVHTVASLLKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVKELA 155
Query: 1264 QILQSLPGHNYAVLSYLMGFLHEVSQESIFNKMNSSNLACVFGLNLIWP 1410
+ ++SLP NY +L Y+ FL EV S NKM+ NLA VFG N++ P
Sbjct: 156 KQVKSLPVVNYNLLKYICRFLDEVQSYSGINKMSVQNLATVFGPNILRP 204
>ref|NP_001075898.1| caytaxin [Bos taurus].
Length = 370
Score = 100 bits (248), Expect = 5e-21
Identities = 58/187 (31%), Positives = 99/187 (52%), Gaps = 4/187 (2%)
Frame = +1
Query: 301 EEAAAALGTVRRPLVAPSAGPDPALSMNHPFYDVARHGILQVAGEDRLGRRVVTFSCCRM 480
E+ +AA G + R ++ L M P+ V HG G + ++ F+ C +
Sbjct: 144 EDGSAANGRLWRTVIIGEQEHRIDLHMIRPYMRVVTHGGYYGEGLNA----IIVFAACFL 199
Query: 481 PPSHELNHRRLLE----YLKYTLDQYVESDYIIVYFHHGLNSRNKPSLGWLQSAYKEFDR 648
P S ++ ++E Y+ +L+ V DY+IVY + R P +GWL+ Y+ DR
Sbjct: 200 PDSSSPDYHYIMENLFLYVISSLELLVAEDYMIVYLNGATPRRRMPGIGWLKKCYQMIDR 259
Query: 649 RYKKNLKALYVVHPTNFIKVLWNILRPLISHKFGKKVTYFNYLSELHEHLKFDQLIVPPE 828
R +KNLK+L +VHP+ FI+ + I RP IS KF K+ Y + L +L + + + + +P
Sbjct: 260 RLRKNLKSLIIVHPSWFIRTVLAISRPFISVKFINKIQYVHSLEDLEQLIPMEHVQIPDC 319
Query: 829 VQRHDEK 849
V +++E+
Sbjct: 320 VLQYEEE 326
>ref|NP_001073089.1| bcl-2/adenovirus E1B 19 kDa-interacting protein 2-like protein [Bos
taurus].
Length = 356
Score = 95.9 bits (237), Expect = 9e-20
Identities = 57/168 (33%), Positives = 92/168 (54%), Gaps = 4/168 (2%)
Frame = +1
Query: 373 LSMNHPFYDVARHGILQVAGEDRLGRRVVTFSCCRMPPSHELNHRRLLEYL-KY---TLD 540
+++ P+ V HG G + V+ F+ C +P S N+ ++E+L +Y TL+
Sbjct: 191 MTVIEPYKKVLSHGGYHGDGLNA----VILFASCYLPRSSIPNYTYVMEHLFRYIVGTLE 246
Query: 541 QYVESDYIIVYFHHGLNSRNKPSLGWLQSAYKEFDRRYKKNLKALYVVHPTNFIKVLWNI 720
V +Y++V+ G + P L W++ Y DRR +KNL+AL VVH T ++K +
Sbjct: 247 LLVAENYLLVHLSGGTSRAQVPPLSWIRQCYHTLDRRLRKNLRALVVVHATWYMKAFLAL 306
Query: 721 LRPLISHKFGKKVTYFNYLSELHEHLKFDQLIVPPEVQRHDEKLRDLH 864
LRP IS KF +K+ + N L EL + + DQ+ +P V++ D DLH
Sbjct: 307 LRPFISSKFTRKIRFLNSLGELAQLISMDQVHIPEVVRQLD---HDLH 351
>ref|XP_001251291.1| PREDICTED: family with sequence similarity 13, member A1-like [Bos
taurus].
Length = 447
Score = 94.0 bits (232), Expect = 3e-19
Identities = 60/174 (34%), Positives = 92/174 (52%), Gaps = 2/174 (1%)
Frame = +1
Query: 928 FGVSLQYLKDKNRGEL-IPPVMRFTVTYLRERGLRTEGLFRRSASVQTVREIQRLYNQGK 1104
FGVSLQ L + E +P ++ V YL GL EGLFR + +V+ V +++ + G
Sbjct: 169 FGVSLQDLHQQGLTENGVPAIVGSIVEYLTMHGLTQEGLFRVNGNVKVVEQLRWKFESGV 228
Query: 1105 PVNFDDYGDIHVPAVIPKTFLRELPQPLLTFEAYEQILGITSVE-SSLRVTCCRQILQSL 1281
PV GD+ A + K FLRELP+ ++T + L + + + + + R +++ L
Sbjct: 229 PVELGRDGDVCAAASLLKLFLRELPESVITSTLQPRFLQLFQDDRNDAQESNLRALIEEL 288
Query: 1282 PGHNYAVLSYLMGFLHEVSQESIFNKMNSSNLACVFGLNLIWPSQGASSLSALV 1443
P +Y +L YL FL +V++ + N+MN NLA VFG N SL LV
Sbjct: 289 PDTHYCLLKYLCQFLTKVAKHHVQNRMNVHNLATVFGPNCFHKGPSQLSLPRLV 342
>ref|XP_002687966.1| PREDICTED: SH3-domain binding protein 1-like [Bos taurus].
Length = 693
Score = 92.0 bits (227), Expect = 1e-18
Identities = 57/174 (32%), Positives = 95/174 (54%), Gaps = 3/174 (1%)
Frame = +1
Query: 928 FGVSLQ-YLKDKNRGELIPPVMRFTVTYLRERGLRTEGLFRRSASVQTVREIQRLYNQGK 1104
+GV L +L++ R +P + V L G++ EGLFR +A ++ +++
Sbjct: 272 YGVPLGIHLRELGRDIALP--IEACVMMLLSEGMKEEGLFRLAAGASVLKRLKQTM-ASD 328
Query: 1105 PVNFDDY-GDIHVPAVIPKTFLRELPQPLLTFEAYEQILGITSV-ESSLRVTCCRQILQS 1278
P + ++ D H A K++LRELP+PL+TF+ Y+ + S+ E R+ +++
Sbjct: 329 PRSLQEFCSDPHAVAGALKSYLRELPEPLMTFDLYDDWMRAASLKEPGARLEALQEVCSR 388
Query: 1279 LPGHNYAVLSYLMGFLHEVSQESIFNKMNSSNLACVFGLNLIWPSQGASSLSAL 1440
LP N + L YLM FL ++++E NKM SN+A V G NL+WP + L+ L
Sbjct: 389 LPHENLSNLRYLMKFLAQLAEEQEVNKMTPSNIAIVLGPNLLWPPEKDGDLAQL 442
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 58,708,993
Number of extensions: 1686633
Number of successful extensions: 9070
Number of sequences better than 1.0e-05: 107
Number of HSP's gapped: 8899
Number of HSP's successfully gapped: 108
Length of query: 534
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 427
Effective length of database: 14,140,958
Effective search space: 6038189066
Effective search space used: 6038189066
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014255
(1602 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001191312.1| rho GTPase-activating protein 8 [Sus scrofa]. 828 0.0
Alignment gi|XP_003122873.2| PREDICTED: rho GTPase-activating protein 1 [... 416 e-116
Alignment gi|XP_003121517.1| PREDICTED: BCL2/adenovirus E1B 19 kDa protei... 107 2e-23
Alignment gi|XP_003129393.2| PREDICTED: rho GTPase-activating protein 24-... 104 1e-22
Alignment gi|XP_003354060.1| PREDICTED: caytaxin [Sus scrofa]. 99 7e-21
Alignment gi|XP_001928046.3| PREDICTED: bcl-2/adenovirus E1B 19 kDa-inter... 98 1e-20
Alignment gi|XP_003357132.1| PREDICTED: protein FAM13A-like [Sus scrofa]. 94 2e-19
Alignment gi|XP_003132101.2| PREDICTED: rho GTPase-activating protein 23,... 92 8e-19
Alignment gi|XP_003125117.2| PREDICTED: rho GTPase-activating protein 25 ... 91 2e-18
Alignment gi|XP_003358061.1| PREDICTED: rho GTPase-activating protein 27-... 86 6e-17
>ref|NP_001191312.1| rho GTPase-activating protein 8 [Sus scrofa].
Length = 486
Score = 828 bits (2138), Expect = 0.0
Identities = 419/473 (88%), Positives = 421/473 (89%)
Frame = +1
Query: 184 MPGSSGADIRTLRPGSPAPQQSVSGXXXXXXXXXXXQRDEEAAAALGTVRRPLVAPSAGP 363
MPGSSGADIRTLRPGSPAPQQSVS QRDEEAAAALGTVRRPLVAPSAGP
Sbjct: 1 MPGSSGADIRTLRPGSPAPQQSVSRLALEELAEIELQRDEEAAAALGTVRRPLVAPSAGP 60
Query: 364 DPALSMNHPFYDVARHGILQVAGEDRLGRRVVTFSCCRMPPSHELNHRRLLEYLKYTLDQ 543
DPALSMNHPFYDVARHGILQVAGEDRLGRRVVTFSCCRMPPSHELNHRRLLEYLKYTLDQ
Sbjct: 61 DPALSMNHPFYDVARHGILQVAGEDRLGRRVVTFSCCRMPPSHELNHRRLLEYLKYTLDQ 120
Query: 544 YVESDYIIVYFHHGLNSRNKPSLGWLQSAYKEFDRRYKKNLKALYVVHPTNFIKVLWNIL 723
YVESDYIIVYFHHGLNSRNKPSLGWLQSAYKEFDRRYKKNLKALYVVHPTNFIKVLWNIL
Sbjct: 121 YVESDYIIVYFHHGLNSRNKPSLGWLQSAYKEFDRRYKKNLKALYVVHPTNFIKVLWNIL 180
Query: 724 RPLISHKFGKKVTYFNYLSELHEHLKFDQLIVPPEVQRHDEKLRDLHAGXXXXXXXXXXX 903
RPLISHKFGKKVTYFNYLSELHEHLKFDQLIVPPEVQRHDEKLRDLHAG
Sbjct: 181 RPLISHKFGKKVTYFNYLSELHEHLKFDQLIVPPEVQRHDEKLRDLHAGRLPPPAKTPPP 240
Query: 904 XXXXXXQQFGVSLQYLKDKNRGELIPPVMRFTVTYLRERGLRTEGLFRRSASVQTVREIQ 1083
QQFGVSLQYLKDKNRGELIPPVMRFTVTYLRERGLRTEGLFRRSASVQTVREIQ
Sbjct: 241 RPPLPTQQFGVSLQYLKDKNRGELIPPVMRFTVTYLRERGLRTEGLFRRSASVQTVREIQ 300
Query: 1084 RLYNQGKPVNFDDYGDIHVPAVIPKTFLRELPQPLLTFEAYEQILGITSVESSLRVTCCR 1263
RLYNQGKP+NFDDYGDIHVPAVI KTFLRELPQPLLTFEAYEQILGITSVESSLRVTCCR
Sbjct: 301 RLYNQGKPMNFDDYGDIHVPAVILKTFLRELPQPLLTFEAYEQILGITSVESSLRVTCCR 360
Query: 1264 QILQSLPGHNYAVLSYLMGFLHEVSQESIFNKMNSSNLACVFGLNLIWPSQGASSLSALV 1443
QILQSLPGHNYAVLSYLMGFLHEVS+ESIFNKMNSSNLACVFGLNLIWPSQGASSLSALV
Sbjct: 361 QILQSLPGHNYAVLSYLMGFLHEVSRESIFNKMNSSNLACVFGLNLIWPSQGASSLSALV 420
Query: 1444 PLNLFTELLIEYYGKVFSSRQAQRELXXXXXXXXXXXXXXXXXXXXXXLTRPP 1602
PLNLFTELLIEYYGKVFSSRQAQREL LTRPP
Sbjct: 421 PLNLFTELLIEYYGKVFSSRQAQRELSDGGAPADGQGGPCPPDGPAAGLTRPP 473
>ref|XP_003122873.2| PREDICTED: rho GTPase-activating protein 1 [Sus scrofa].
Length = 439
Score = 416 bits (1069), Expect = e-116
Identities = 203/390 (52%), Positives = 276/390 (70%), Gaps = 3/390 (0%)
Frame = +1
Query: 352 SAGPDPA--LSMNHPFYDVARHGILQVAGEDRLGRRVVTFSCCRMPPSHELNHRRLLEYL 525
S+ P+P L + P+YD+ARH I++VAG+D+ GR+++ FS CRMPPSH+L+H +LL YL
Sbjct: 49 SSSPEPVTHLKWDDPYYDIARHQIVEVAGDDKYGRKIIVFSACRMPPSHQLDHSKLLGYL 108
Query: 526 KYTLDQYVESDYIIVYFHHGLNSRNKPSLGWLQSAYKEFDRRYKKNLKALYVVHPTNFIK 705
K+TLDQYVESDY ++Y HHGL S NKPSL WL+ AY+EFDR+YKKN+KALY+VHPT FIK
Sbjct: 109 KHTLDQYVESDYTLLYLHHGLTSDNKPSLSWLRDAYREFDRKYKKNIKALYIVHPTMFIK 168
Query: 706 VLWNILRPLISHKFGKKVTYFNYLSELHEHLKFDQLIVPPEVQRHDEKLRDLHAGXXXXX 885
L + +P+IS KFG+K+ Y NYLSEL EH+K +QL +P +V ++D+ L+
Sbjct: 169 TLLILFKPIISFKFGQKIFYVNYLSELSEHVKLEQLGIPRQVLKYDDFLKSTQKS-PATA 227
Query: 886 XXXXXXXXXXXXQQFGVSLQYLKDKNRG-ELIPPVMRFTVTYLRERGLRTEGLFRRSASV 1062
QQFGVSLQ+L++KN E IP V+R TV YL+ L TEG+FRRSA+
Sbjct: 228 PKPMPPRPPLPNQQFGVSLQHLREKNPDQEPIPLVLRETVAYLQAHALTTEGIFRRSANT 287
Query: 1063 QTVREIQRLYNQGKPVNFDDYGDIHVPAVIPKTFLRELPQPLLTFEAYEQILGITSVESS 1242
Q VRE+Q+ YN G PV+FD Y ++H+PAVI KTFLRELP+PLLTF+ Y ++G S++ S
Sbjct: 288 QVVREVQQKYNMGLPVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYSHVVGFLSIDES 347
Query: 1243 LRVTCCRQILQSLPGHNYAVLSYLMGFLHEVSQESIFNKMNSSNLACVFGLNLIWPSQGA 1422
RV Q+ Q+LP NY VL +L FL ++S NKM ++NLA VFG NL+W A
Sbjct: 348 QRVQATLQVFQTLPEENYLVLRFLTAFLVQISALCDQNKMTNTNLAVVFGPNLLWAKDAA 407
Query: 1423 SSLSALVPLNLFTELLIEYYGKVFSSRQAQ 1512
+L A+ P+N FT+ L+++ G++F S A+
Sbjct: 408 ITLKAINPINTFTKFLLDHQGELFPSPDAK 437
>ref|XP_003121517.1| PREDICTED: BCL2/adenovirus E1B 19 kDa protein-interacting protein
2-like [Sus scrofa].
Length = 413
Score = 107 bits (266), Expect = 2e-23
Identities = 55/136 (40%), Positives = 87/136 (63%), Gaps = 4/136 (2%)
Frame = +1
Query: 454 VVTFSCCRMPPSHELNHRRLLEYL-KY---TLDQYVESDYIIVYFHHGLNSRNKPSLGWL 621
+V F+ C MP S + N+R L++ L KY TL+ V +Y+IVY + R PSLGWL
Sbjct: 254 IVVFAVCFMPESGQPNYRYLMDNLFKYVIGTLELLVAENYMIVYLNGATTRRKMPSLGWL 313
Query: 622 QSAYKEFDRRYKKNLKALYVVHPTNFIKVLWNILRPLISHKFGKKVTYFNYLSELHEHLK 801
+ Y++ DRR +KNLK+L +VHP+ FI+ L + RP IS KF +K+ Y L+EL E +
Sbjct: 314 RKCYQQIDRRLRKNLKSLIIVHPSWFIRTLLAVTRPFISSKFSQKIRYVFNLAELAELVP 373
Query: 802 FDQLIVPPEVQRHDEK 849
+ + +P +++++E+
Sbjct: 374 MEYVGIPECIKQYEEE 389
>ref|XP_003129393.2| PREDICTED: rho GTPase-activating protein 24-like [Sus scrofa].
Length = 656
Score = 104 bits (260), Expect = 1e-22
Identities = 63/169 (37%), Positives = 93/169 (55%), Gaps = 9/169 (5%)
Frame = +1
Query: 931 GVSLQYLKDKNRGE------LIPPVMRFTVTYLRERGLRTEGLFRRSASVQTVREIQRLY 1092
G+ Q L+D R E L P ++ V ++R+RGL+ EGLFR V+E+Q +
Sbjct: 38 GIFGQKLEDTVRYEKRYGNRLAPMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDAF 97
Query: 1093 NQGKPVNFDDYGDIHVPAVIPKTFLRELPQPLLTFEAYEQILG---ITSVESSLRVTCCR 1263
+ G+ +FD D+H A + K +LRELP+P++ + YE L + S E V
Sbjct: 98 DCGEKPSFDSNTDVHTVASLLKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVKELA 157
Query: 1264 QILQSLPGHNYAVLSYLMGFLHEVSQESIFNKMNSSNLACVFGLNLIWP 1410
+ ++SLP NY +L Y+ FL EV S NKM+ NLA VFG N++ P
Sbjct: 158 KQVKSLPAVNYNLLKYICRFLDEVQSYSGINKMSVQNLATVFGPNILRP 206
>ref|XP_003354060.1| PREDICTED: caytaxin [Sus scrofa].
Length = 400
Score = 99.0 bits (245), Expect = 7e-21
Identities = 58/187 (31%), Positives = 99/187 (52%), Gaps = 4/187 (2%)
Frame = +1
Query: 301 EEAAAALGTVRRPLVAPSAGPDPALSMNHPFYDVARHGILQVAGEDRLGRRVVTFSCCRM 480
E+ +AA G + R ++ L M P+ V HG G + ++ F+ C +
Sbjct: 144 EDGSAANGRLWRTVIIGEQEHRIDLHMIRPYMRVVTHGGYYGEGLNA----IIVFAACFL 199
Query: 481 PPSHELNHRRLLE----YLKYTLDQYVESDYIIVYFHHGLNSRNKPSLGWLQSAYKEFDR 648
P S ++ ++E Y+ +L+ V DY+IVY + R P +GWL+ Y+ DR
Sbjct: 200 PDSSLPDYHYIMENLFLYVISSLELLVAEDYMIVYLNGATPRRRMPGIGWLKKCYQMIDR 259
Query: 649 RYKKNLKALYVVHPTNFIKVLWNILRPLISHKFGKKVTYFNYLSELHEHLKFDQLIVPPE 828
R +KNLK+L +VHP+ FI+ + I RP IS KF K+ Y + L +L + + + + +P
Sbjct: 260 RLRKNLKSLIIVHPSWFIRTVLAISRPFISVKFINKIQYVHSLEDLEQLIPMEHVQIPDC 319
Query: 829 VQRHDEK 849
V +++E+
Sbjct: 320 VLQYEEE 326
>ref|XP_001928046.3| PREDICTED: bcl-2/adenovirus E1B 19 kDa-interacting protein 2-like
protein [Sus scrofa].
Length = 241
Score = 97.8 bits (242), Expect = 1e-20
Identities = 58/168 (34%), Positives = 92/168 (54%), Gaps = 4/168 (2%)
Frame = +1
Query: 373 LSMNHPFYDVARHGILQVAGEDRLGRRVVTFSCCRMPPSHELNHRRLLEYL-KY---TLD 540
+++ P+ V HG G + V+ F+ C +P S N+ ++E+L +Y TL+
Sbjct: 76 MTVIEPYKKVLSHGGYHGDGLNA----VILFASCYLPRSSIPNYTYVMEHLFRYMVGTLE 131
Query: 541 QYVESDYIIVYFHHGLNSRNKPSLGWLQSAYKEFDRRYKKNLKALYVVHPTNFIKVLWNI 720
V +Y++V+ G N P L WL+ Y D R +KNL+AL VVH T ++K +
Sbjct: 132 LLVAENYLLVHLSGGTNRAQVPPLSWLRQCYHTLDGRLRKNLRALVVVHATWYVKAFLAL 191
Query: 721 LRPLISHKFGKKVTYFNYLSELHEHLKFDQLIVPPEVQRHDEKLRDLH 864
LRP IS KF +K+ + N L EL + + DQ+ +P V++ D+ DLH
Sbjct: 192 LRPFISSKFTRKIRFLNSLGELAQLISMDQVHIPEAVRQLDQ---DLH 236
>ref|XP_003357132.1| PREDICTED: protein FAM13A-like [Sus scrofa].
Length = 284
Score = 94.0 bits (232), Expect = 2e-19
Identities = 61/164 (37%), Positives = 89/164 (54%), Gaps = 7/164 (4%)
Frame = +1
Query: 928 FGVSLQYLKDKNRGEL-IPPVMRFTVTYLRERGLRTEGLFRRSASVQTVREIQRLYNQGK 1104
FGVSLQ L + E +P V+R V YL GL EGLFR + +V+ V ++ G
Sbjct: 41 FGVSLQELHQQGLTENGVPAVVRSLVEYLTMHGLTQEGLFRVNGNVKVVERLRWQLESGA 100
Query: 1105 PVNFDDYGDIHVPAVIPKTFLRELPQPLLTFEAYEQILGI------TSVESSLRVTCCRQ 1266
PV GD+ A + K FLRELP+ ++T + + + + + ESSL R
Sbjct: 101 PVELGTDGDVSSAASLLKLFLRELPERVITSALHPRFIQLFQDDRHDAQESSL-----RD 155
Query: 1267 ILQSLPGHNYAVLSYLMGFLHEVSQESIFNKMNSSNLACVFGLN 1398
+++ LP +Y +L YL FL +V++ + N+MN NLA VFG N
Sbjct: 156 LIKELPDPHYCLLKYLCQFLTKVARHHVQNRMNLHNLATVFGPN 199
>ref|XP_003132101.2| PREDICTED: rho GTPase-activating protein 23, partial [Sus scrofa].
Length = 1209
Score = 92.0 bits (227), Expect = 8e-19
Identities = 59/203 (29%), Positives = 102/203 (50%), Gaps = 6/203 (2%)
Frame = +1
Query: 928 FGVSLQYLKDKNRGELIPPVMRFTVTYLRERGLRTEGLFRRSASVQTVREIQRLYNQGK- 1104
FGV L+ + + +P ++ + RGL + G++R + V +Q N+G
Sbjct: 963 FGVRLEECQPATENQRVPLIVAACCRIVEARGLESTGIYRVPGNNAVVSSLQEQLNRGPG 1022
Query: 1105 PVNFDD--YGDIHVPAVIPKTFLRELPQPLLTFEAYEQILGITSVESSL-RVTCCRQILQ 1275
+N D + D++V + + K+F R+LP+PL T + Y + +E S R+ R++++
Sbjct: 1023 DINLQDERWQDLNVISSLLKSFFRKLPEPLFTDDKYNDFIEANRIEDSRERMKTLRKLIR 1082
Query: 1276 SLPGHNYAVLSYLMGFLHEVSQESIFNKMNSSNLACVFGLNLIWPSQG--ASSLSALVPL 1449
LPGH Y L +L+G L ++ S NKM NLA VFG L+ S+ A ++ +
Sbjct: 1083 DLPGHYYETLKFLVGHLKTIADHSEKNKMEPRNLALVFGPTLVRTSEDNMADMVTHMPDR 1142
Query: 1450 NLFTELLIEYYGKVFSSRQAQRE 1518
E LI++ FS + + E
Sbjct: 1143 YKIVETLIQHSDWFFSDNEDKGE 1165
>ref|XP_003125117.2| PREDICTED: rho GTPase-activating protein 25 [Sus scrofa].
Length = 640
Score = 90.5 bits (223), Expect = 2e-18
Identities = 49/147 (33%), Positives = 82/147 (55%), Gaps = 3/147 (2%)
Frame = +1
Query: 973 LIPPVMRFTVTYLRERGLRTEGLFRRSASVQTVREIQRLYNQGKPVNFDDYGDIHVPAVI 1152
L+P ++ ++ E GL EG+FR V++++ ++ G+ NFD D+H A +
Sbjct: 169 LVPILVEKCAEFILEHGLNEEGIFRLPGQDNLVKQLRDAFDAGERPNFDRDTDVHTVASL 228
Query: 1153 PKTFLRELPQPLLTFEAYEQILGITSVESSLRVTCCRQI---LQSLPGHNYAVLSYLMGF 1323
K +LR+LP+P++ + YE L + ++ +++ L LP NY++LSY+ F
Sbjct: 229 LKLYLRDLPEPVVPWSQYEGFLLCGQLMNADEAKAQQELVKQLSILPRDNYSLLSYICRF 288
Query: 1324 LHEVSQESIFNKMNSSNLACVFGLNLI 1404
LHE+ NKM+ NLA V G+NLI
Sbjct: 289 LHEIQLNCGVNKMSVDNLATVIGVNLI 315
>ref|XP_003358061.1| PREDICTED: rho GTPase-activating protein 27-like, partial [Sus
scrofa].
Length = 646
Score = 85.9 bits (211), Expect = 6e-17
Identities = 57/195 (29%), Positives = 102/195 (52%), Gaps = 4/195 (2%)
Frame = +1
Query: 922 QQFGVSLQYLKDKNRGELIPPVMRFTVTYLRERGLRTEGLFRRSASVQTVREIQRLYNQG 1101
Q FG +L L ++ R +P ++ + + RGL +GL+R S ++ T+++++ +
Sbjct: 450 QVFGCALAVLCERERSS-VPRFVQQCIRAVEARGLEIDGLYRISGNLATIQKLRYKVDHD 508
Query: 1102 KPVNFDD--YGDIHVPAVIPKTFLRELPQPLLTFEAYEQ-ILGITSVESSLRVTCCRQIL 1272
+ ++ DD + D+HV K F RELP+PL F + Q I I + + R C R ++
Sbjct: 509 ERLDLDDGRWEDVHVITGALKLFFRELPEPLFPFCYFRQFITAIKLQDQAQRSRCVRDLV 568
Query: 1273 QSLPGHNYAVLSYLMGFLHEVSQESIFNKMNSSNLACVFGLNLIWPSQGASSL-SALVPL 1449
+SLP N+ L L+ L V + N+M+ ++A VFG L+ P +S+ +V
Sbjct: 569 RSLPAPNHDTLRLLIQHLCRVIEHGEQNRMSVQSVAIVFGPTLLRPETEETSMPMTMVFQ 628
Query: 1450 NLFTELLIEYYGKVF 1494
N EL+++ +F
Sbjct: 629 NQVVELILQQCADIF 643
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 37,972,982
Number of extensions: 1088447
Number of successful extensions: 5916
Number of sequences better than 1.0e-05: 55
Number of HSP's gapped: 5813
Number of HSP's successfully gapped: 56
Length of query: 534
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 430
Effective length of database: 8,754,644
Effective search space: 3764496920
Effective search space used: 3764496920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014255
(1602 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001158100.1| rho GTPase-activating protein 8 [Mus musculu... 621 e-178
Alignment gi|NP_001158099.1| rho GTPase-activating protein 8 [Mus musculu... 621 e-178
Alignment gi|NP_001192263.1| rho GTPase-activating protein 8 [Mus musculu... 621 e-178
Alignment gi|NP_082731.2| rho GTPase-activating protein 8 [Mus musculus]. 621 e-178
Alignment gi|NP_001139374.1| rho GTPase-activating protein 1 isoform 1 [M... 420 e-117
Alignment gi|NP_666236.3| rho GTPase-activating protein 1 isoform 2 [Mus ... 420 e-117
Alignment gi|NP_001008239.1| BCL2/adenovirus E1B 19 kDa protein-interacti... 106 6e-23
Alignment gi|NP_058067.2| BCL2/adenovirus E1B 19 kDa protein-interacting ... 106 6e-23
Alignment gi|NP_666273.1| rho GTPase-activating protein 24 isoform 2 [Mus... 103 3e-22
Alignment gi|NP_083546.2| rho GTPase-activating protein 24 isoform 1 [Mus... 103 3e-22
>ref|NP_001158100.1| rho GTPase-activating protein 8 [Mus musculus].
Length = 425
Score = 621 bits (1602), Expect = e-178
Identities = 303/388 (78%), Positives = 340/388 (87%)
Frame = +1
Query: 355 AGPDPALSMNHPFYDVARHGILQVAGEDRLGRRVVTFSCCRMPPSHELNHRRLLEYLKYT 534
AG DP LS +HPFYDVARHGILQVAG+DR GRR+ TFSCCR+PP H+LNH+RLLEYLKYT
Sbjct: 2 AGLDPTLSTSHPFYDVARHGILQVAGDDRQGRRIFTFSCCRLPPLHQLNHQRLLEYLKYT 61
Query: 535 LDQYVESDYIIVYFHHGLNSRNKPSLGWLQSAYKEFDRRYKKNLKALYVVHPTNFIKVLW 714
LDQ+VE+DY IVYFH+GL+S+NKPSLGWLQ+ YKEFDR+YKKNLKALYVVHPT+ IK LW
Sbjct: 62 LDQHVENDYTIVYFHYGLSSQNKPSLGWLQNTYKEFDRKYKKNLKALYVVHPTSLIKALW 121
Query: 715 NILRPLISHKFGKKVTYFNYLSELHEHLKFDQLIVPPEVQRHDEKLRDLHAGXXXXXXXX 894
NI +PLISHKFGKKVTY + L EL EHL+ DQL++PPEV R+DEKL++LH G
Sbjct: 122 NIFKPLISHKFGKKVTYCSNLRELREHLQCDQLLIPPEVVRYDEKLQNLHKGQPPPPTKT 181
Query: 895 XXXXXXXXXQQFGVSLQYLKDKNRGELIPPVMRFTVTYLRERGLRTEGLFRRSASVQTVR 1074
QQFGVSLQYL+DKN+GELIPPV+R+TVTYLRE+GLRTEGLFRRSAS QTVR
Sbjct: 182 PPPRPPLPTQQFGVSLQYLRDKNQGELIPPVLRWTVTYLREKGLRTEGLFRRSASAQTVR 241
Query: 1075 EIQRLYNQGKPVNFDDYGDIHVPAVIPKTFLRELPQPLLTFEAYEQILGITSVESSLRVT 1254
++QRLY+QGKPVNFDDYGD+H+PAVI KTFLRELPQPLLTF+AYEQILGITSVESSLRVT
Sbjct: 242 QVQRLYDQGKPVNFDDYGDMHLPAVILKTFLRELPQPLLTFQAYEQILGITSVESSLRVT 301
Query: 1255 CCRQILQSLPGHNYAVLSYLMGFLHEVSQESIFNKMNSSNLACVFGLNLIWPSQGASSLS 1434
CR IL+SLP HNYAVL YLMGFLHEVS ESI NKMNSSNLACVFGLNLIWPSQG +SLS
Sbjct: 302 HCRLILRSLPEHNYAVLRYLMGFLHEVSLESISNKMNSSNLACVFGLNLIWPSQGVASLS 361
Query: 1435 ALVPLNLFTELLIEYYGKVFSSRQAQRE 1518
ALVPLNLFTELLIEYY KVFS ++A E
Sbjct: 362 ALVPLNLFTELLIEYYDKVFSCQEAPGE 389
>ref|NP_001158099.1| rho GTPase-activating protein 8 [Mus musculus].
Length = 425
Score = 621 bits (1602), Expect = e-178
Identities = 303/388 (78%), Positives = 340/388 (87%)
Frame = +1
Query: 355 AGPDPALSMNHPFYDVARHGILQVAGEDRLGRRVVTFSCCRMPPSHELNHRRLLEYLKYT 534
AG DP LS +HPFYDVARHGILQVAG+DR GRR+ TFSCCR+PP H+LNH+RLLEYLKYT
Sbjct: 2 AGLDPTLSTSHPFYDVARHGILQVAGDDRQGRRIFTFSCCRLPPLHQLNHQRLLEYLKYT 61
Query: 535 LDQYVESDYIIVYFHHGLNSRNKPSLGWLQSAYKEFDRRYKKNLKALYVVHPTNFIKVLW 714
LDQ+VE+DY IVYFH+GL+S+NKPSLGWLQ+ YKEFDR+YKKNLKALYVVHPT+ IK LW
Sbjct: 62 LDQHVENDYTIVYFHYGLSSQNKPSLGWLQNTYKEFDRKYKKNLKALYVVHPTSLIKALW 121
Query: 715 NILRPLISHKFGKKVTYFNYLSELHEHLKFDQLIVPPEVQRHDEKLRDLHAGXXXXXXXX 894
NI +PLISHKFGKKVTY + L EL EHL+ DQL++PPEV R+DEKL++LH G
Sbjct: 122 NIFKPLISHKFGKKVTYCSNLRELREHLQCDQLLIPPEVVRYDEKLQNLHKGQPPPPTKT 181
Query: 895 XXXXXXXXXQQFGVSLQYLKDKNRGELIPPVMRFTVTYLRERGLRTEGLFRRSASVQTVR 1074
QQFGVSLQYL+DKN+GELIPPV+R+TVTYLRE+GLRTEGLFRRSAS QTVR
Sbjct: 182 PPPRPPLPTQQFGVSLQYLRDKNQGELIPPVLRWTVTYLREKGLRTEGLFRRSASAQTVR 241
Query: 1075 EIQRLYNQGKPVNFDDYGDIHVPAVIPKTFLRELPQPLLTFEAYEQILGITSVESSLRVT 1254
++QRLY+QGKPVNFDDYGD+H+PAVI KTFLRELPQPLLTF+AYEQILGITSVESSLRVT
Sbjct: 242 QVQRLYDQGKPVNFDDYGDMHLPAVILKTFLRELPQPLLTFQAYEQILGITSVESSLRVT 301
Query: 1255 CCRQILQSLPGHNYAVLSYLMGFLHEVSQESIFNKMNSSNLACVFGLNLIWPSQGASSLS 1434
CR IL+SLP HNYAVL YLMGFLHEVS ESI NKMNSSNLACVFGLNLIWPSQG +SLS
Sbjct: 302 HCRLILRSLPEHNYAVLRYLMGFLHEVSLESISNKMNSSNLACVFGLNLIWPSQGVASLS 361
Query: 1435 ALVPLNLFTELLIEYYGKVFSSRQAQRE 1518
ALVPLNLFTELLIEYY KVFS ++A E
Sbjct: 362 ALVPLNLFTELLIEYYDKVFSCQEAPGE 389
>ref|NP_001192263.1| rho GTPase-activating protein 8 [Mus musculus].
Length = 425
Score = 621 bits (1602), Expect = e-178
Identities = 303/388 (78%), Positives = 340/388 (87%)
Frame = +1
Query: 355 AGPDPALSMNHPFYDVARHGILQVAGEDRLGRRVVTFSCCRMPPSHELNHRRLLEYLKYT 534
AG DP LS +HPFYDVARHGILQVAG+DR GRR+ TFSCCR+PP H+LNH+RLLEYLKYT
Sbjct: 2 AGLDPTLSTSHPFYDVARHGILQVAGDDRQGRRIFTFSCCRLPPLHQLNHQRLLEYLKYT 61
Query: 535 LDQYVESDYIIVYFHHGLNSRNKPSLGWLQSAYKEFDRRYKKNLKALYVVHPTNFIKVLW 714
LDQ+VE+DY IVYFH+GL+S+NKPSLGWLQ+ YKEFDR+YKKNLKALYVVHPT+ IK LW
Sbjct: 62 LDQHVENDYTIVYFHYGLSSQNKPSLGWLQNTYKEFDRKYKKNLKALYVVHPTSLIKALW 121
Query: 715 NILRPLISHKFGKKVTYFNYLSELHEHLKFDQLIVPPEVQRHDEKLRDLHAGXXXXXXXX 894
NI +PLISHKFGKKVTY + L EL EHL+ DQL++PPEV R+DEKL++LH G
Sbjct: 122 NIFKPLISHKFGKKVTYCSNLRELREHLQCDQLLIPPEVVRYDEKLQNLHKGQPPPPTKT 181
Query: 895 XXXXXXXXXQQFGVSLQYLKDKNRGELIPPVMRFTVTYLRERGLRTEGLFRRSASVQTVR 1074
QQFGVSLQYL+DKN+GELIPPV+R+TVTYLRE+GLRTEGLFRRSAS QTVR
Sbjct: 182 PPPRPPLPTQQFGVSLQYLRDKNQGELIPPVLRWTVTYLREKGLRTEGLFRRSASAQTVR 241
Query: 1075 EIQRLYNQGKPVNFDDYGDIHVPAVIPKTFLRELPQPLLTFEAYEQILGITSVESSLRVT 1254
++QRLY+QGKPVNFDDYGD+H+PAVI KTFLRELPQPLLTF+AYEQILGITSVESSLRVT
Sbjct: 242 QVQRLYDQGKPVNFDDYGDMHLPAVILKTFLRELPQPLLTFQAYEQILGITSVESSLRVT 301
Query: 1255 CCRQILQSLPGHNYAVLSYLMGFLHEVSQESIFNKMNSSNLACVFGLNLIWPSQGASSLS 1434
CR IL+SLP HNYAVL YLMGFLHEVS ESI NKMNSSNLACVFGLNLIWPSQG +SLS
Sbjct: 302 HCRLILRSLPEHNYAVLRYLMGFLHEVSLESISNKMNSSNLACVFGLNLIWPSQGVASLS 361
Query: 1435 ALVPLNLFTELLIEYYGKVFSSRQAQRE 1518
ALVPLNLFTELLIEYY KVFS ++A E
Sbjct: 362 ALVPLNLFTELLIEYYDKVFSCQEAPGE 389
>ref|NP_082731.2| rho GTPase-activating protein 8 [Mus musculus].
Length = 425
Score = 621 bits (1602), Expect = e-178
Identities = 303/388 (78%), Positives = 340/388 (87%)
Frame = +1
Query: 355 AGPDPALSMNHPFYDVARHGILQVAGEDRLGRRVVTFSCCRMPPSHELNHRRLLEYLKYT 534
AG DP LS +HPFYDVARHGILQVAG+DR GRR+ TFSCCR+PP H+LNH+RLLEYLKYT
Sbjct: 2 AGLDPTLSTSHPFYDVARHGILQVAGDDRQGRRIFTFSCCRLPPLHQLNHQRLLEYLKYT 61
Query: 535 LDQYVESDYIIVYFHHGLNSRNKPSLGWLQSAYKEFDRRYKKNLKALYVVHPTNFIKVLW 714
LDQ+VE+DY IVYFH+GL+S+NKPSLGWLQ+ YKEFDR+YKKNLKALYVVHPT+ IK LW
Sbjct: 62 LDQHVENDYTIVYFHYGLSSQNKPSLGWLQNTYKEFDRKYKKNLKALYVVHPTSLIKALW 121
Query: 715 NILRPLISHKFGKKVTYFNYLSELHEHLKFDQLIVPPEVQRHDEKLRDLHAGXXXXXXXX 894
NI +PLISHKFGKKVTY + L EL EHL+ DQL++PPEV R+DEKL++LH G
Sbjct: 122 NIFKPLISHKFGKKVTYCSNLRELREHLQCDQLLIPPEVVRYDEKLQNLHKGQPPPPTKT 181
Query: 895 XXXXXXXXXQQFGVSLQYLKDKNRGELIPPVMRFTVTYLRERGLRTEGLFRRSASVQTVR 1074
QQFGVSLQYL+DKN+GELIPPV+R+TVTYLRE+GLRTEGLFRRSAS QTVR
Sbjct: 182 PPPRPPLPTQQFGVSLQYLRDKNQGELIPPVLRWTVTYLREKGLRTEGLFRRSASAQTVR 241
Query: 1075 EIQRLYNQGKPVNFDDYGDIHVPAVIPKTFLRELPQPLLTFEAYEQILGITSVESSLRVT 1254
++QRLY+QGKPVNFDDYGD+H+PAVI KTFLRELPQPLLTF+AYEQILGITSVESSLRVT
Sbjct: 242 QVQRLYDQGKPVNFDDYGDMHLPAVILKTFLRELPQPLLTFQAYEQILGITSVESSLRVT 301
Query: 1255 CCRQILQSLPGHNYAVLSYLMGFLHEVSQESIFNKMNSSNLACVFGLNLIWPSQGASSLS 1434
CR IL+SLP HNYAVL YLMGFLHEVS ESI NKMNSSNLACVFGLNLIWPSQG +SLS
Sbjct: 302 HCRLILRSLPEHNYAVLRYLMGFLHEVSLESISNKMNSSNLACVFGLNLIWPSQGVASLS 361
Query: 1435 ALVPLNLFTELLIEYYGKVFSSRQAQRE 1518
ALVPLNLFTELLIEYY KVFS ++A E
Sbjct: 362 ALVPLNLFTELLIEYYDKVFSCQEAPGE 389
>ref|NP_001139374.1| rho GTPase-activating protein 1 isoform 1 [Mus musculus].
Length = 479
Score = 420 bits (1080), Expect = e-117
Identities = 204/390 (52%), Positives = 279/390 (71%), Gaps = 3/390 (0%)
Frame = +1
Query: 352 SAGPDPA--LSMNHPFYDVARHGILQVAGEDRLGRRVVTFSCCRMPPSHELNHRRLLEYL 525
S+ P+P L + P+YD+ARH I++VAG+D+ GR+++ FS CRMPPSH+L+H +LL YL
Sbjct: 89 SSSPEPVTHLKWDDPYYDIARHQIVEVAGDDKYGRKIIVFSACRMPPSHQLDHSKLLGYL 148
Query: 526 KYTLDQYVESDYIIVYFHHGLNSRNKPSLGWLQSAYKEFDRRYKKNLKALYVVHPTNFIK 705
K+TLDQYVESDY ++Y HHGL S NKPSL WL+ AY+EFDR+YKKN+KALY+VHPT FIK
Sbjct: 149 KHTLDQYVESDYTLLYLHHGLTSDNKPSLSWLRDAYREFDRKYKKNIKALYIVHPTMFIK 208
Query: 706 VLWNILRPLISHKFGKKVTYFNYLSELHEHLKFDQLIVPPEVQRHDEKLRDLHAGXXXXX 885
L + +PLIS KFG+K+ Y NYLSEL EH+K +QL +P +V ++D+ L+
Sbjct: 209 TLLILFKPLISFKFGRKIFYVNYLSELSEHVKLEQLGIPRQVLKYDDFLKSTQKS-PATA 267
Query: 886 XXXXXXXXXXXXQQFGVSLQYLKDKNRG-ELIPPVMRFTVTYLRERGLRTEGLFRRSASV 1062
QQFGVSLQ+L++K+ G + IP V+R TV YL+ L TEG+FRRSA+
Sbjct: 268 PKPMPPRPPLPNQQFGVSLQHLQEKSPGQDPIPIVLRETVAYLQAHALTTEGIFRRSANT 327
Query: 1063 QTVREIQRLYNQGKPVNFDDYGDIHVPAVIPKTFLRELPQPLLTFEAYEQILGITSVESS 1242
Q VRE+Q+ YN G PV+FD Y ++H+PAVI KTFLRELP+PLLTF+ Y ++G +++ S
Sbjct: 328 QVVREVQQKYNMGLPVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDES 387
Query: 1243 LRVTCCRQILQSLPGHNYAVLSYLMGFLHEVSQESIFNKMNSSNLACVFGLNLIWPSQGA 1422
RV +Q+LQ+LP NY VL +L FL ++S NKM ++NLA VFG NL+W A
Sbjct: 388 QRVEVTQQVLQTLPEENYQVLHFLTAFLVQISAHCDQNKMTNTNLAVVFGPNLLWAKDAA 447
Query: 1423 SSLSALVPLNLFTELLIEYYGKVFSSRQAQ 1512
+L A+ P+N FT+ L+++ G++F S AQ
Sbjct: 448 ITLKAINPINTFTKFLLDHQGELFPSTDAQ 477
>ref|NP_666236.3| rho GTPase-activating protein 1 isoform 2 [Mus musculus].
Length = 439
Score = 420 bits (1080), Expect = e-117
Identities = 204/390 (52%), Positives = 279/390 (71%), Gaps = 3/390 (0%)
Frame = +1
Query: 352 SAGPDPA--LSMNHPFYDVARHGILQVAGEDRLGRRVVTFSCCRMPPSHELNHRRLLEYL 525
S+ P+P L + P+YD+ARH I++VAG+D+ GR+++ FS CRMPPSH+L+H +LL YL
Sbjct: 49 SSSPEPVTHLKWDDPYYDIARHQIVEVAGDDKYGRKIIVFSACRMPPSHQLDHSKLLGYL 108
Query: 526 KYTLDQYVESDYIIVYFHHGLNSRNKPSLGWLQSAYKEFDRRYKKNLKALYVVHPTNFIK 705
K+TLDQYVESDY ++Y HHGL S NKPSL WL+ AY+EFDR+YKKN+KALY+VHPT FIK
Sbjct: 109 KHTLDQYVESDYTLLYLHHGLTSDNKPSLSWLRDAYREFDRKYKKNIKALYIVHPTMFIK 168
Query: 706 VLWNILRPLISHKFGKKVTYFNYLSELHEHLKFDQLIVPPEVQRHDEKLRDLHAGXXXXX 885
L + +PLIS KFG+K+ Y NYLSEL EH+K +QL +P +V ++D+ L+
Sbjct: 169 TLLILFKPLISFKFGRKIFYVNYLSELSEHVKLEQLGIPRQVLKYDDFLKSTQKS-PATA 227
Query: 886 XXXXXXXXXXXXQQFGVSLQYLKDKNRG-ELIPPVMRFTVTYLRERGLRTEGLFRRSASV 1062
QQFGVSLQ+L++K+ G + IP V+R TV YL+ L TEG+FRRSA+
Sbjct: 228 PKPMPPRPPLPNQQFGVSLQHLQEKSPGQDPIPIVLRETVAYLQAHALTTEGIFRRSANT 287
Query: 1063 QTVREIQRLYNQGKPVNFDDYGDIHVPAVIPKTFLRELPQPLLTFEAYEQILGITSVESS 1242
Q VRE+Q+ YN G PV+FD Y ++H+PAVI KTFLRELP+PLLTF+ Y ++G +++ S
Sbjct: 288 QVVREVQQKYNMGLPVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDES 347
Query: 1243 LRVTCCRQILQSLPGHNYAVLSYLMGFLHEVSQESIFNKMNSSNLACVFGLNLIWPSQGA 1422
RV +Q+LQ+LP NY VL +L FL ++S NKM ++NLA VFG NL+W A
Sbjct: 348 QRVEVTQQVLQTLPEENYQVLHFLTAFLVQISAHCDQNKMTNTNLAVVFGPNLLWAKDAA 407
Query: 1423 SSLSALVPLNLFTELLIEYYGKVFSSRQAQ 1512
+L A+ P+N FT+ L+++ G++F S AQ
Sbjct: 408 ITLKAINPINTFTKFLLDHQGELFPSTDAQ 437
>ref|NP_001008239.1| BCL2/adenovirus E1B 19 kDa protein-interacting protein 2 isoform
alpha [Mus musculus].
Length = 314
Score = 106 bits (264), Expect = 6e-23
Identities = 55/137 (40%), Positives = 87/137 (63%), Gaps = 4/137 (2%)
Frame = +1
Query: 454 VVTFSCCRMPPSHELNHRRLLEYL-KY---TLDQYVESDYIIVYFHHGLNSRNKPSLGWL 621
+V F+ C MP S + N+R L++ L KY TL+ V +Y+I+Y + R PSLGWL
Sbjct: 167 IVVFAVCFMPESGQPNYRYLMDNLFKYVIGTLELLVAENYMIIYLNGATTRRKMPSLGWL 226
Query: 622 QSAYKEFDRRYKKNLKALYVVHPTNFIKVLWNILRPLISHKFGKKVTYFNYLSELHEHLK 801
+ Y++ DRR +KNLK+L +VHP+ FI+ L + RP IS KF +K+ Y L+EL E +
Sbjct: 227 RRCYQQIDRRLRKNLKSLIIVHPSWFIRTLLAVTRPFISSKFSQKIRYVFNLAELAELVP 286
Query: 802 FDQLIVPPEVQRHDEKL 852
+ + +P +++ D++L
Sbjct: 287 MEYVGIPECIKQVDQEL 303
>ref|NP_058067.2| BCL2/adenovirus E1B 19 kDa protein-interacting protein 2 isoform
beta [Mus musculus].
Length = 326
Score = 106 bits (264), Expect = 6e-23
Identities = 54/136 (39%), Positives = 87/136 (63%), Gaps = 4/136 (2%)
Frame = +1
Query: 454 VVTFSCCRMPPSHELNHRRLLEYL-KY---TLDQYVESDYIIVYFHHGLNSRNKPSLGWL 621
+V F+ C MP S + N+R L++ L KY TL+ V +Y+I+Y + R PSLGWL
Sbjct: 167 IVVFAVCFMPESGQPNYRYLMDNLFKYVIGTLELLVAENYMIIYLNGATTRRKMPSLGWL 226
Query: 622 QSAYKEFDRRYKKNLKALYVVHPTNFIKVLWNILRPLISHKFGKKVTYFNYLSELHEHLK 801
+ Y++ DRR +KNLK+L +VHP+ FI+ L + RP IS KF +K+ Y L+EL E +
Sbjct: 227 RRCYQQIDRRLRKNLKSLIIVHPSWFIRTLLAVTRPFISSKFSQKIRYVFNLAELAELVP 286
Query: 802 FDQLIVPPEVQRHDEK 849
+ + +P +++++E+
Sbjct: 287 MEYVGIPECIKQYEEE 302
>ref|NP_666273.1| rho GTPase-activating protein 24 isoform 2 [Mus musculus].
Length = 654
Score = 103 bits (258), Expect = 3e-22
Identities = 63/169 (37%), Positives = 94/169 (55%), Gaps = 9/169 (5%)
Frame = +1
Query: 931 GVSLQYLKDKNRGE------LIPPVMRFTVTYLRERGLRTEGLFRRSASVQTVREIQRLY 1092
G+ Q L+D R E L P ++ V ++R+RGL+ EGLFR V+E+Q +
Sbjct: 36 GIFGQKLEDTVRYEKRYGNRLAPMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDAF 95
Query: 1093 NQGKPVNFDDYGDIHVPAVIPKTFLRELPQPLLTFEAYEQILG---ITSVESSLRVTCCR 1263
+ G+ +FD D+H A + K +LRELP+P++ + YE L + S E V
Sbjct: 96 DCGEKPSFDSNTDVHTVASLLKLYLRELPEPVVPYAKYEDFLSCATLLSKEEEAGVKELM 155
Query: 1264 QILQSLPGHNYAVLSYLMGFLHEVSQESIFNKMNSSNLACVFGLNLIWP 1410
+ ++SLP NY +L Y+ FL EV S NKM++ NLA VFG N++ P
Sbjct: 156 KQVKSLPVVNYNLLKYICRFLDEVQSYSGVNKMSAQNLATVFGPNILRP 204
>ref|NP_083546.2| rho GTPase-activating protein 24 isoform 1 [Mus musculus].
Length = 747
Score = 103 bits (258), Expect = 3e-22
Identities = 63/169 (37%), Positives = 94/169 (55%), Gaps = 9/169 (5%)
Frame = +1
Query: 931 GVSLQYLKDKNRGE------LIPPVMRFTVTYLRERGLRTEGLFRRSASVQTVREIQRLY 1092
G+ Q L+D R E L P ++ V ++R+RGL+ EGLFR V+E+Q +
Sbjct: 129 GIFGQKLEDTVRYEKRYGNRLAPMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDAF 188
Query: 1093 NQGKPVNFDDYGDIHVPAVIPKTFLRELPQPLLTFEAYEQILG---ITSVESSLRVTCCR 1263
+ G+ +FD D+H A + K +LRELP+P++ + YE L + S E V
Sbjct: 189 DCGEKPSFDSNTDVHTVASLLKLYLRELPEPVVPYAKYEDFLSCATLLSKEEEAGVKELM 248
Query: 1264 QILQSLPGHNYAVLSYLMGFLHEVSQESIFNKMNSSNLACVFGLNLIWP 1410
+ ++SLP NY +L Y+ FL EV S NKM++ NLA VFG N++ P
Sbjct: 249 KQVKSLPVVNYNLLKYICRFLDEVQSYSGVNKMSAQNLATVFGPNILRP 297
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 50,219,808
Number of extensions: 1382661
Number of successful extensions: 7179
Number of sequences better than 1.0e-05: 100
Number of HSP's gapped: 6995
Number of HSP's successfully gapped: 100
Length of query: 534
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 428
Effective length of database: 12,433,743
Effective search space: 5321642004
Effective search space used: 5321642004
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014255
(1602 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_851851.2| PRR5-ARHGAP8 fusion protein [Homo sapiens]. 686 0.0
Alignment gi|NP_851852.2| rho GTPase-activating protein 8 isoform 2 [Homo... 668 0.0
Alignment gi|NP_001017526.1| rho GTPase-activating protein 8 isoform 1 [H... 653 0.0
Alignment gi|NP_001185655.1| rho GTPase-activating protein 8 isoform 3 [H... 513 e-146
Alignment gi|NP_004299.1| rho GTPase-activating protein 1 [Homo sapiens]. 416 e-116
Alignment gi|NP_004321.2| BCL2/adenovirus E1B 19 kDa protein-interacting ... 107 3e-23
Alignment gi|NP_056040.2| protein prune homolog 2 [Homo sapiens]. 105 1e-22
Alignment gi|NP_001036134.1| rho GTPase-activating protein 24 isoform 3 [... 103 6e-22
Alignment gi|NP_112595.2| rho GTPase-activating protein 24 isoform 2 [Hom... 103 6e-22
Alignment gi|NP_001020787.2| rho GTPase-activating protein 24 isoform 1 [... 103 6e-22
>ref|NP_851851.2| PRR5-ARHGAP8 fusion protein [Homo sapiens].
Length = 555
Score = 686 bits (1770), Expect = 0.0
Identities = 341/411 (82%), Positives = 367/411 (89%), Gaps = 2/411 (0%)
Frame = +1
Query: 292 QRDEEAAAA-LGTVR-RPLVAPSAGPDPALSMNHPFYDVARHGILQVAGEDRLGRRVVTF 465
QRD+ AAAA LG VR RP V P AG DPALS +HPFYDVARHGILQVAG+DR GRRVVTF
Sbjct: 101 QRDKAAAAAVLGAVRKRPSVVPMAGQDPALSTSHPFYDVARHGILQVAGDDRFGRRVVTF 160
Query: 466 SCCRMPPSHELNHRRLLEYLKYTLDQYVESDYIIVYFHHGLNSRNKPSLGWLQSAYKEFD 645
SCCRMPPSHEL+H+RLLEYLKYTLDQYVE+DY IVYFH+GLNSRNKPSLGWLQSAYKEFD
Sbjct: 161 SCCRMPPSHELDHQRLLEYLKYTLDQYVENDYTIVYFHYGLNSRNKPSLGWLQSAYKEFD 220
Query: 646 RRYKKNLKALYVVHPTNFIKVLWNILRPLISHKFGKKVTYFNYLSELHEHLKFDQLIVPP 825
R+YKKNLKALYVVHPT+FIKVLWNIL+PLISHKFGKKV YFNYLSELHEHLK+DQL++PP
Sbjct: 221 RKYKKNLKALYVVHPTSFIKVLWNILKPLISHKFGKKVIYFNYLSELHEHLKYDQLVIPP 280
Query: 826 EVQRHDEKLRDLHAGXXXXXXXXXXXXXXXXXQQFGVSLQYLKDKNRGELIPPVMRFTVT 1005
EV R+DEKL+ LH G QQFGVSLQYLKDKN+GELIPPV+RFTVT
Sbjct: 281 EVLRYDEKLQSLHEGRTPPPTKTPPPRPPLPTQQFGVSLQYLKDKNQGELIPPVLRFTVT 340
Query: 1006 YLRERGLRTEGLFRRSASVQTVREIQRLYNQGKPVNFDDYGDIHVPAVIPKTFLRELPQP 1185
YLRE+GLRTEGLFRRSASVQTVREIQRLYNQGKPVNFDDYGDIH+PAVI KTFLRELPQP
Sbjct: 341 YLREKGLRTEGLFRRSASVQTVREIQRLYNQGKPVNFDDYGDIHIPAVILKTFLRELPQP 400
Query: 1186 LLTFEAYEQILGITSVESSLRVTCCRQILQSLPGHNYAVLSYLMGFLHEVSQESIFNKMN 1365
LLTF+AYEQILGIT VESSLRVT CRQIL+SLP HNY VL YLMGFLH VS+ESIFNKMN
Sbjct: 401 LLTFQAYEQILGITCVESSLRVTGCRQILRSLPEHNYVVLRYLMGFLHAVSRESIFNKMN 460
Query: 1366 SSNLACVFGLNLIWPSQGASSLSALVPLNLFTELLIEYYGKVFSSRQAQRE 1518
SSNLACVFGLNLIWPSQG SSLSALVPLN+FTELLIEYY K+FS+ +A E
Sbjct: 461 SSNLACVFGLNLIWPSQGVSSLSALVPLNMFTELLIEYYEKIFSTPEAPGE 511
>ref|NP_851852.2| rho GTPase-activating protein 8 isoform 2 [Homo sapiens].
Length = 433
Score = 668 bits (1723), Expect = 0.0
Identities = 326/388 (84%), Positives = 351/388 (90%)
Frame = +1
Query: 355 AGPDPALSMNHPFYDVARHGILQVAGEDRLGRRVVTFSCCRMPPSHELNHRRLLEYLKYT 534
AG DPALS +HPFYDVARHGILQVAG+DR GRRVVTFSCCRMPPSHEL+H+RLLEYLKYT
Sbjct: 2 AGQDPALSTSHPFYDVARHGILQVAGDDRFGRRVVTFSCCRMPPSHELDHQRLLEYLKYT 61
Query: 535 LDQYVESDYIIVYFHHGLNSRNKPSLGWLQSAYKEFDRRYKKNLKALYVVHPTNFIKVLW 714
LDQYVE+DY IVYFH+GLNSRNKPSLGWLQSAYKEFDR+YKKNLKALYVVHPT+FIKVLW
Sbjct: 62 LDQYVENDYTIVYFHYGLNSRNKPSLGWLQSAYKEFDRKYKKNLKALYVVHPTSFIKVLW 121
Query: 715 NILRPLISHKFGKKVTYFNYLSELHEHLKFDQLIVPPEVQRHDEKLRDLHAGXXXXXXXX 894
NIL+PLISHKFGKKV YFNYLSELHEHLK+DQL++PPEV R+DEKL+ LH G
Sbjct: 122 NILKPLISHKFGKKVIYFNYLSELHEHLKYDQLVIPPEVLRYDEKLQSLHEGRTPPPTKT 181
Query: 895 XXXXXXXXXQQFGVSLQYLKDKNRGELIPPVMRFTVTYLRERGLRTEGLFRRSASVQTVR 1074
QQFGVSLQYLKDKN+GELIPPV+RFTVTYLRE+GLRTEGLFRRSASVQTVR
Sbjct: 182 PPPRPPLPTQQFGVSLQYLKDKNQGELIPPVLRFTVTYLREKGLRTEGLFRRSASVQTVR 241
Query: 1075 EIQRLYNQGKPVNFDDYGDIHVPAVIPKTFLRELPQPLLTFEAYEQILGITSVESSLRVT 1254
EIQRLYNQGKPVNFDDYGDIH+PAVI KTFLRELPQPLLTF+AYEQILGIT VESSLRVT
Sbjct: 242 EIQRLYNQGKPVNFDDYGDIHIPAVILKTFLRELPQPLLTFQAYEQILGITCVESSLRVT 301
Query: 1255 CCRQILQSLPGHNYAVLSYLMGFLHEVSQESIFNKMNSSNLACVFGLNLIWPSQGASSLS 1434
CRQIL+SLP HNY VL YLMGFLH VS+ESIFNKMNSSNLACVFGLNLIWPSQG SSLS
Sbjct: 302 GCRQILRSLPEHNYVVLRYLMGFLHAVSRESIFNKMNSSNLACVFGLNLIWPSQGVSSLS 361
Query: 1435 ALVPLNLFTELLIEYYGKVFSSRQAQRE 1518
ALVPLN+FTELLIEYY K+FS+ +A E
Sbjct: 362 ALVPLNMFTELLIEYYEKIFSTPEAPGE 389
>ref|NP_001017526.1| rho GTPase-activating protein 8 isoform 1 [Homo sapiens].
Length = 464
Score = 653 bits (1684), Expect = 0.0
Identities = 327/419 (78%), Positives = 351/419 (83%), Gaps = 31/419 (7%)
Frame = +1
Query: 355 AGPDPALSMNHPFYDVARHGILQVAGEDRLGRRVVTFSCCRMPPSHELNHRRLLEYLKYT 534
AG DPALS +HPFYDVARHGILQVAG+DR GRRVVTFSCCRMPPSHEL+H+RLLEYLKYT
Sbjct: 2 AGQDPALSTSHPFYDVARHGILQVAGDDRFGRRVVTFSCCRMPPSHELDHQRLLEYLKYT 61
Query: 535 LDQYVESDYIIVYFHHGLNSRNKPSLGWLQSAYKEFDR---------------------- 648
LDQYVE+DY IVYFH+GLNSRNKPSLGWLQSAYKEFDR
Sbjct: 62 LDQYVENDYTIVYFHYGLNSRNKPSLGWLQSAYKEFDRKDGDLTMWPRLVSNSKLKRSSH 121
Query: 649 ---------RYKKNLKALYVVHPTNFIKVLWNILRPLISHKFGKKVTYFNYLSELHEHLK 801
RYKKNLKALYVVHPT+FIKVLWNIL+PLISHKFGKKV YFNYLSELHEHLK
Sbjct: 122 LSLPKYWDYRYKKNLKALYVVHPTSFIKVLWNILKPLISHKFGKKVIYFNYLSELHEHLK 181
Query: 802 FDQLIVPPEVQRHDEKLRDLHAGXXXXXXXXXXXXXXXXXQQFGVSLQYLKDKNRGELIP 981
+DQL++PPEV R+DEKL+ LH G QQFGVSLQYLKDKN+GELIP
Sbjct: 182 YDQLVIPPEVLRYDEKLQSLHEGRTPPPTKTPPPRPPLPTQQFGVSLQYLKDKNQGELIP 241
Query: 982 PVMRFTVTYLRERGLRTEGLFRRSASVQTVREIQRLYNQGKPVNFDDYGDIHVPAVIPKT 1161
PV+RFTVTYLRE+GLRTEGLFRRSASVQTVREIQRLYNQGKPVNFDDYGDIH+PAVI KT
Sbjct: 242 PVLRFTVTYLREKGLRTEGLFRRSASVQTVREIQRLYNQGKPVNFDDYGDIHIPAVILKT 301
Query: 1162 FLRELPQPLLTFEAYEQILGITSVESSLRVTCCRQILQSLPGHNYAVLSYLMGFLHEVSQ 1341
FLRELPQPLLTF+AYEQILGIT VESSLRVT CRQIL+SLP HNY VL YLMGFLH VS+
Sbjct: 302 FLRELPQPLLTFQAYEQILGITCVESSLRVTGCRQILRSLPEHNYVVLRYLMGFLHAVSR 361
Query: 1342 ESIFNKMNSSNLACVFGLNLIWPSQGASSLSALVPLNLFTELLIEYYGKVFSSRQAQRE 1518
ESIFNKMNSSNLACVFGLNLIWPSQG SSLSALVPLN+FTELLIEYY K+FS+ +A E
Sbjct: 362 ESIFNKMNSSNLACVFGLNLIWPSQGVSSLSALVPLNMFTELLIEYYEKIFSTPEAPGE 420
>ref|NP_001185655.1| rho GTPase-activating protein 8 isoform 3 [Homo sapiens].
Length = 305
Score = 513 bits (1322), Expect(2) = e-146
Identities = 247/293 (84%), Positives = 266/293 (90%)
Frame = +1
Query: 355 AGPDPALSMNHPFYDVARHGILQVAGEDRLGRRVVTFSCCRMPPSHELNHRRLLEYLKYT 534
AG DPALS +HPFYDVARHGILQVAG+DR GRRVVTFSCCRMPPSHEL+H+RLLEYLKYT
Sbjct: 2 AGQDPALSTSHPFYDVARHGILQVAGDDRFGRRVVTFSCCRMPPSHELDHQRLLEYLKYT 61
Query: 535 LDQYVESDYIIVYFHHGLNSRNKPSLGWLQSAYKEFDRRYKKNLKALYVVHPTNFIKVLW 714
LDQYVE+DY IVYFH+GLNSRNKPSLGWLQSAYKEFDR+YKKNLKALYVVHPT+FIKVLW
Sbjct: 62 LDQYVENDYTIVYFHYGLNSRNKPSLGWLQSAYKEFDRKYKKNLKALYVVHPTSFIKVLW 121
Query: 715 NILRPLISHKFGKKVTYFNYLSELHEHLKFDQLIVPPEVQRHDEKLRDLHAGXXXXXXXX 894
NIL+PLISHKFGKKV YFNYLSELHEHLK+DQL++PPEV R+DEKL+ LH G
Sbjct: 122 NILKPLISHKFGKKVIYFNYLSELHEHLKYDQLVIPPEVLRYDEKLQSLHEGRTPPPTKT 181
Query: 895 XXXXXXXXXQQFGVSLQYLKDKNRGELIPPVMRFTVTYLRERGLRTEGLFRRSASVQTVR 1074
QQFGVSLQYLKDKN+GELIPPV+RFTVTYLRE+GLRTEGLFRRSASVQTVR
Sbjct: 182 PPPRPPLPTQQFGVSLQYLKDKNQGELIPPVLRFTVTYLREKGLRTEGLFRRSASVQTVR 241
Query: 1075 EIQRLYNQGKPVNFDDYGDIHVPAVIPKTFLRELPQPLLTFEAYEQILGITSV 1233
EIQRLYNQGKPVNFDDYGDIH+PAVI KTFLRELPQPLLTF+AYEQILGIT V
Sbjct: 242 EIQRLYNQGKPVNFDDYGDIHIPAVILKTFLRELPQPLLTFQAYEQILGITCV 294
Score = 24.3 bits (51), Expect(2) = e-146
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +3
Query: 1335 VPGEHF*QNEQL 1370
VPGEH QNEQL
Sbjct: 294 VPGEHLQQNEQL 305
>ref|NP_004299.1| rho GTPase-activating protein 1 [Homo sapiens].
Length = 439
Score = 416 bits (1068), Expect = e-116
Identities = 201/377 (53%), Positives = 271/377 (71%), Gaps = 1/377 (0%)
Frame = +1
Query: 373 LSMNHPFYDVARHGILQVAGEDRLGRRVVTFSCCRMPPSHELNHRRLLEYLKYTLDQYVE 552
L + P+YD+ARH I++VAG+D+ GR+++ FS CRMPPSH+L+H +LL YLK+TLDQYVE
Sbjct: 58 LKWDDPYYDIARHQIVEVAGDDKYGRKIIVFSACRMPPSHQLDHSKLLGYLKHTLDQYVE 117
Query: 553 SDYIIVYFHHGLNSRNKPSLGWLQSAYKEFDRRYKKNLKALYVVHPTNFIKVLWNILRPL 732
SDY ++Y HHGL S NKPSL WL+ AY+EFDR+YKKN+KALY+VHPT FIK L + +PL
Sbjct: 118 SDYTLLYLHHGLTSDNKPSLSWLRDAYREFDRKYKKNIKALYIVHPTMFIKTLLILFKPL 177
Query: 733 ISHKFGKKVTYFNYLSELHEHLKFDQLIVPPEVQRHDEKLRDLHAGXXXXXXXXXXXXXX 912
IS KFG+K+ Y NYLSEL EH+K +QL +P +V ++D+ L+
Sbjct: 178 ISFKFGQKIFYVNYLSELSEHVKLEQLGIPRQVLKYDDFLKSTQKS-PATAPKPMPPRPP 236
Query: 913 XXXQQFGVSLQYLKDKN-RGELIPPVMRFTVTYLRERGLRTEGLFRRSASVQTVREIQRL 1089
QQFGVSLQ+L++KN E IP V+R TV YL+ L TEG+FRRSA+ Q VRE+Q+
Sbjct: 237 LPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQK 296
Query: 1090 YNQGKPVNFDDYGDIHVPAVIPKTFLRELPQPLLTFEAYEQILGITSVESSLRVTCCRQI 1269
YN G PV+FD Y ++H+PAVI KTFLRELP+PLLTF+ Y ++G +++ S RV Q+
Sbjct: 297 YNMGLPVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQV 356
Query: 1270 LQSLPGHNYAVLSYLMGFLHEVSQESIFNKMNSSNLACVFGLNLIWPSQGASSLSALVPL 1449
LQ+LP NY VL +L FL ++S S NKM ++NLA VFG NL+W A +L A+ P+
Sbjct: 357 LQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKDAAITLKAINPI 416
Query: 1450 NLFTELLIEYYGKVFSS 1500
N FT+ L+++ G++F S
Sbjct: 417 NTFTKFLLDHQGELFPS 433
>ref|NP_004321.2| BCL2/adenovirus E1B 19 kDa protein-interacting protein 2 [Homo
sapiens].
Length = 435
Score = 107 bits (267), Expect = 3e-23
Identities = 56/137 (40%), Positives = 87/137 (63%), Gaps = 4/137 (2%)
Frame = +1
Query: 454 VVTFSCCRMPPSHELNHRRLLEYL-KY---TLDQYVESDYIIVYFHHGLNSRNKPSLGWL 621
+V F+ C MP S + N+R L++ L KY TL+ V +Y+IVY + R PSLGWL
Sbjct: 288 IVVFAVCFMPESSQPNYRYLMDNLFKYVIGTLELLVAENYMIVYLNGATTRRKMPSLGWL 347
Query: 622 QSAYKEFDRRYKKNLKALYVVHPTNFIKVLWNILRPLISHKFGKKVTYFNYLSELHEHLK 801
+ Y++ DRR +KNLK+L +VHP+ FI+ L + RP IS KF +K+ Y L+EL E +
Sbjct: 348 RKCYQQIDRRLRKNLKSLIIVHPSWFIRTLLAVTRPFISSKFSQKIRYVFNLAELAELVP 407
Query: 802 FDQLIVPPEVQRHDEKL 852
+ + +P +++ D++L
Sbjct: 408 MEYVGIPECIKQVDQEL 424
>ref|NP_056040.2| protein prune homolog 2 [Homo sapiens].
Length = 3088
Score = 105 bits (262), Expect = 1e-22
Identities = 51/139 (36%), Positives = 81/139 (58%), Gaps = 4/139 (2%)
Frame = +1
Query: 454 VVTFSCCRMPPSHELNHRRLLE----YLKYTLDQYVESDYIIVYFHHGLNSRNKPSLGWL 621
++ F+ C +P S ++ ++E Y+ TL+ V DY+IVY + R P LGW+
Sbjct: 2919 IIVFAACFLPDSSRADYHYVMENLFLYVISTLELMVAEDYMIVYLNGATPRRRMPGLGWM 2978
Query: 622 QSAYKEFDRRYKKNLKALYVVHPTNFIKVLWNILRPLISHKFGKKVTYFNYLSELHEHLK 801
+ Y+ DRR +KNLK+ +VHP+ FI+ + + RP IS KF K+ Y N LSEL +
Sbjct: 2979 KKCYQMIDRRLRKNLKSFIIVHPSWFIRTILAVTRPFISSKFSSKIKYVNSLSELSGLIP 3038
Query: 802 FDQLIVPPEVQRHDEKLRD 858
D + +P + + DE+LR+
Sbjct: 3039 MDCIHIPESIIKLDEELRE 3057
>ref|NP_001036134.1| rho GTPase-activating protein 24 isoform 3 [Homo sapiens].
Length = 653
Score = 103 bits (256), Expect = 6e-22
Identities = 63/169 (37%), Positives = 93/169 (55%), Gaps = 9/169 (5%)
Frame = +1
Query: 931 GVSLQYLKDKNRGE------LIPPVMRFTVTYLRERGLRTEGLFRRSASVQTVREIQRLY 1092
G+ Q L+D R E L P ++ V ++R+RGL+ EGLFR V+E+Q +
Sbjct: 36 GIFGQKLEDTVRYEKRYGNRLAPMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDAF 95
Query: 1093 NQGKPVNFDDYGDIHVPAVIPKTFLRELPQPLLTFEAYEQILG---ITSVESSLRVTCCR 1263
+ G+ +FD D+H A + K +LRELP+P++ + YE L + S E V
Sbjct: 96 DCGEKPSFDSNTDVHTVASLLKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVKELA 155
Query: 1264 QILQSLPGHNYAVLSYLMGFLHEVSQESIFNKMNSSNLACVFGLNLIWP 1410
+ ++SLP NY +L Y+ FL EV S NKM+ NLA VFG N++ P
Sbjct: 156 KQVKSLPVVNYNLLKYICRFLDEVQSYSGVNKMSVQNLATVFGPNILRP 204
>ref|NP_112595.2| rho GTPase-activating protein 24 isoform 2 [Homo sapiens].
Length = 655
Score = 103 bits (256), Expect = 6e-22
Identities = 63/169 (37%), Positives = 93/169 (55%), Gaps = 9/169 (5%)
Frame = +1
Query: 931 GVSLQYLKDKNRGE------LIPPVMRFTVTYLRERGLRTEGLFRRSASVQTVREIQRLY 1092
G+ Q L+D R E L P ++ V ++R+RGL+ EGLFR V+E+Q +
Sbjct: 38 GIFGQKLEDTVRYEKRYGNRLAPMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDAF 97
Query: 1093 NQGKPVNFDDYGDIHVPAVIPKTFLRELPQPLLTFEAYEQILG---ITSVESSLRVTCCR 1263
+ G+ +FD D+H A + K +LRELP+P++ + YE L + S E V
Sbjct: 98 DCGEKPSFDSNTDVHTVASLLKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVKELA 157
Query: 1264 QILQSLPGHNYAVLSYLMGFLHEVSQESIFNKMNSSNLACVFGLNLIWP 1410
+ ++SLP NY +L Y+ FL EV S NKM+ NLA VFG N++ P
Sbjct: 158 KQVKSLPVVNYNLLKYICRFLDEVQSYSGVNKMSVQNLATVFGPNILRP 206
>ref|NP_001020787.2| rho GTPase-activating protein 24 isoform 1 [Homo sapiens].
Length = 748
Score = 103 bits (256), Expect = 6e-22
Identities = 63/169 (37%), Positives = 93/169 (55%), Gaps = 9/169 (5%)
Frame = +1
Query: 931 GVSLQYLKDKNRGE------LIPPVMRFTVTYLRERGLRTEGLFRRSASVQTVREIQRLY 1092
G+ Q L+D R E L P ++ V ++R+RGL+ EGLFR V+E+Q +
Sbjct: 131 GIFGQKLEDTVRYEKRYGNRLAPMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDAF 190
Query: 1093 NQGKPVNFDDYGDIHVPAVIPKTFLRELPQPLLTFEAYEQILG---ITSVESSLRVTCCR 1263
+ G+ +FD D+H A + K +LRELP+P++ + YE L + S E V
Sbjct: 191 DCGEKPSFDSNTDVHTVASLLKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVKELA 250
Query: 1264 QILQSLPGHNYAVLSYLMGFLHEVSQESIFNKMNSSNLACVFGLNLIWP 1410
+ ++SLP NY +L Y+ FL EV S NKM+ NLA VFG N++ P
Sbjct: 251 KQVKSLPVVNYNLLKYICRFLDEVQSYSGVNKMSVQNLATVFGPNILRP 299
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 59,883,932
Number of extensions: 1679502
Number of successful extensions: 8690
Number of sequences better than 1.0e-05: 106
Number of HSP's gapped: 8514
Number of HSP's successfully gapped: 108
Length of query: 534
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 427
Effective length of database: 14,770,016
Effective search space: 6306796832
Effective search space used: 6306796832
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014255
(1602 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 539 e-150
>Sscrofa_Chr05
|| Length = 111506441
Score = 539 bits (272), Expect = e-150
Identities = 272/272 (100%)
Strand = Plus / Minus
Query: 1331 aggtgtcccaggagagcatttttaacaaaatgaacagctccaacctggcctgcgtctttg 1390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1710573 aggtgtcccaggagagcatttttaacaaaatgaacagctccaacctggcctgcgtctttg 1710514
Query: 1391 ggctgaacttgatctggccgtcccagggagcgtcttccctgagcgccctcgtgcccttga 1450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1710513 ggctgaacttgatctggccgtcccagggagcgtcttccctgagcgccctcgtgcccttga 1710454
Query: 1451 acctgttcaccgagctgctcatcgagtactatggcaaggtctttagcagccggcaggcgc 1510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1710453 acctgttcaccgagctgctcatcgagtactatggcaaggtctttagcagccggcaggcgc 1710394
Query: 1511 agcgggagctcggcgccggtggggccccggcagacgggcagggcggcccctgccccccag 1570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1710393 agcgggagctcggcgccggtggggccccggcagacgggcagggcggcccctgccccccag 1710334
Query: 1571 atggacccgccgcgggcctcaccaggcctccc 1602
||||||||||||||||||||||||||||||||
Sbjct: 1710333 atggacccgccgcgggcctcaccaggcctccc 1710302
Score = 293 bits (148), Expect = 2e-76
Identities = 148/148 (100%)
Strand = Plus / Minus
Query: 284 tagagctgcagagagatgaggaggcggctgctgccctgggcacagtgagaaggcccttgg 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1743285 tagagctgcagagagatgaggaggcggctgctgccctgggcacagtgagaaggcccttgg 1743226
Query: 344 tggcgccctcggctggcccggaccctgctctgagcatgaatcatcccttctacgacgtgg 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1743225 tggcgccctcggctggcccggaccctgctctgagcatgaatcatcccttctacgacgtgg 1743166
Query: 404 ccagacacggcatcttgcaggtggcagg 431
||||||||||||||||||||||||||||
Sbjct: 1743165 ccagacacggcatcttgcaggtggcagg 1743138
Score = 266 bits (134), Expect = 3e-68
Identities = 134/134 (100%)
Strand = Plus / Minus
Query: 519 gtatttgaagtacacgctggaccagtacgtggagagcgactacatcatcgtctatttcca 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1730367 gtatttgaagtacacgctggaccagtacgtggagagcgactacatcatcgtctatttcca 1730308
Query: 579 ccacgggctgaacagccggaacaagccgtcgctgggctggctccaaagcgcctacaagga 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1730307 ccacgggctgaacagccggaacaagccgtcgctgggctggctccaaagcgcctacaagga 1730248
Query: 639 gtttgacaggaggt 652
||||||||||||||
Sbjct: 1730247 gtttgacaggaggt 1730234
Score = 254 bits (128), Expect = 1e-64
Identities = 131/132 (99%)
Strand = Plus / Minus
Query: 1098 agggaagcccgtgaactttgacgactacggggacatccacgtccctgccgtcatcccgaa 1157
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1714152 agggaagcccgtgaactttgacgactacggggacatccacgtccctgccgtcatcctgaa 1714093
Query: 1158 gaccttcctgcgggagctgccccagccgctgctcaccttcgaggcctacgagcagattct 1217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1714092 gaccttcctgcgggagctgccccagccgctgctcaccttcgaggcctacgagcagattct 1714033
Query: 1218 cgggatcaccag 1229
||||||||||||
Sbjct: 1714032 cgggatcaccag 1714021
Score = 238 bits (120), Expect = 8e-60
Identities = 120/120 (100%)
Strand = Plus / Minus
Query: 167 ggcatcagagagaccccatgcccggatcctcgggagctgacatccggaccctgcgcccgg 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1745852 ggcatcagagagaccccatgcccggatcctcgggagctgacatccggaccctgcgcccgg 1745793
Query: 227 gcagtcctgccccccagcagagcgtgtccgggctggccttggaggagctggccgaaatag 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1745792 gcagtcctgccccccagcagagcgtgtccgggctggccttggaggagctggccgaaatag 1745733
Score = 238 bits (120), Expect = 8e-60
Identities = 120/120 (100%)
Strand = Plus / Minus
Query: 48 caggttttgaagcagcctcctgagtaccgaacaaccaggtggtaactctcgctgtgcggc 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1746423 caggttttgaagcagcctcctgagtaccgaacaaccaggtggtaactctcgctgtgcggc 1746364
Query: 108 cgtgaccagctctgattcatcctcgctggcctcagctacccctccgcaaagtgggaccag 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1746363 cgtgaccagctctgattcatcctcgctggcctcagctacccctccgcaaagtgggaccag 1746304
Score = 222 bits (112), Expect = 5e-55
Identities = 112/112 (100%)
Strand = Plus / Minus
Query: 836 ggcatgacgagaagcttcgggacctgcatgcgggcaggctgccccctcctgccaagacgc 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1722710 ggcatgacgagaagcttcgggacctgcatgcgggcaggctgccccctcctgccaagacgc 1722651
Query: 896 caccgccgcggccccctctgcccacccagcagtttggcgtcagcctgcagta 947
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1722650 caccgccgcggccccctctgcccacccagcagtttggcgtcagcctgcagta 1722599
Score = 212 bits (107), Expect = 4e-52
Identities = 107/107 (100%)
Strand = Plus / Minus
Query: 1229 gcgtggagagcagcctgcgggtgacctgctgccgccagatcctgcagagcctcccggggc 1288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1711374 gcgtggagagcagcctgcgggtgacctgctgccgccagatcctgcagagcctcccggggc 1711315
Query: 1289 acaactacgccgtcctcagctacctcatgggcttcctgcacgaggtg 1335
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1711314 acaactacgccgtcctcagctacctcatgggcttcctgcacgaggtg 1711268
Score = 206 bits (104), Expect = 3e-50
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 734 tcagtcacaagtttgggaaaaaggtcacctatttcaactatctgagcgagctccacgaac 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1724278 tcagtcacaagtttgggaaaaaggtcacctatttcaactatctgagcgagctccacgaac 1724219
Query: 794 acctcaaattcgaccagctgatcgtccccccagaagttcagcgg 837
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1724218 acctcaaattcgaccagctgatcgtccccccagaagttcagcgg 1724175
Score = 186 bits (94), Expect = 3e-44
Identities = 94/94 (100%)
Strand = Plus / Minus
Query: 428 caggggaggaccgccttggaagacgagtcgtcacgttcagctgctgccggatgcctccgt 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1735048 caggggaggaccgccttggaagacgagtcgtcacgttcagctgctgccggatgcctccgt 1734989
Query: 488 cccacgagctcaaccacaggcggctgctggagta 521
||||||||||||||||||||||||||||||||||
Sbjct: 1734988 cccacgagctcaaccacaggcggctgctggagta 1734955
Score = 176 bits (89), Expect = 2e-41
Identities = 89/89 (100%)
Strand = Plus / Minus
Query: 649 aggtacaaaaagaacttgaaggcgctctatgtcgtgcaccccaccaacttcatcaaggtc 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1728321 aggtacaaaaagaacttgaaggcgctctatgtcgtgcaccccaccaacttcatcaaggtc 1728262
Query: 709 ctgtggaacatcctcagacccctcatcag 737
|||||||||||||||||||||||||||||
Sbjct: 1728261 ctgtggaacatcctcagacccctcatcag 1728233
Score = 161 bits (81), Expect = 1e-36
Identities = 81/81 (100%)
Strand = Plus / Minus
Query: 1020 aggactccgcactgagggtctgttccggagatcggccagcgtccagactgtccgagagat 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1714625 aggactccgcactgagggtctgttccggagatcggccagcgtccagactgtccgagagat 1714566
Query: 1080 ccagcggctctacaaccaagg 1100
|||||||||||||||||||||
Sbjct: 1714565 ccagcggctctacaaccaagg 1714545
Score = 149 bits (75), Expect = 6e-33
Identities = 75/75 (100%)
Strand = Plus / Minus
Query: 948 cctcaaagacaagaatcgaggagaactcattccccctgtgatgcggttcacagtgacgta 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1718088 cctcaaagacaagaatcgaggagaactcattccccctgtgatgcggttcacagtgacgta 1718029
Query: 1008 cctgagagagagagg 1022
|||||||||||||||
Sbjct: 1718028 cctgagagagagagg 1718014
Score = 89.7 bits (45), Expect = 4e-15
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 8 gccaggccgagcccaggtgaggcgccggcggggctgtagccaggt 52
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1761044 gccaggccgagcccaggtgaggcgccggcggggctgtagccaggt 1761000
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,107,679
Number of extensions: 242
Number of successful extensions: 242
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 14
Length of query: 1602
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1580
Effective length of database: 2,808,408,574
Effective search space: 4437285546920
Effective search space used: 4437285546920
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)