Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014259
(1070 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534219.2| PREDICTED: similar to MutL protein homolog 1 is... 520 e-169
Alignment gi|XP_859279.1| PREDICTED: similar to MutL protein homolog 1 is... 520 e-169
Alignment gi|XP_859114.1| PREDICTED: similar to MutL protein homolog 1 is... 520 e-169
Alignment gi|XP_859237.1| PREDICTED: similar to MutL protein homolog 1 is... 440 e-145
Alignment gi|XP_859198.1| PREDICTED: similar to MutL protein homolog 1 is... 90 1e-34
Alignment gi|XP_536879.2| PREDICTED: similar to PMS1 protein homolog 2 (D... 137 2e-32
Alignment gi|XP_536002.1| PREDICTED: similar to PMS1 protein homolog 1 (D... 124 1e-28
Alignment gi|XP_855680.1| PREDICTED: similar to PMS1 protein homolog 1 (D... 112 5e-25
Alignment gi|XP_868128.1| PREDICTED: similar to DNA mismatch repair prote... 111 1e-24
Alignment gi|XP_537511.2| PREDICTED: similar to DNA mismatch repair prote... 111 1e-24
>ref|XP_534219.2| PREDICTED: similar to MutL protein homolog 1 isoform 1 [Canis
familiaris].
Length = 757
Score = 520 bits (1338), Expect(3) = e-169
Identities = 267/275 (97%), Positives = 268/275 (97%)
Frame = +3
Query: 63 MSQVPGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQ 242
MS V GVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQ
Sbjct: 1 MSLVAGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQ 60
Query: 243 IQDNGTGIRKEDLDIVCERFTTSKLQSFEDLAHISTYGFRGEALASISHVAHVTITTKTA 422
IQDNGTGIRKEDLDIVCERFTTSKLQSFEDLA ISTYGFRGEALASISHVAHVTITTKTA
Sbjct: 61 IQDNGTGIRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTA 120
Query: 423 DGKCAYRAHYSDGKLKAPPKPCAGNQGTQITVEDLFYNISTRRKALKNPSEEYGKILEVV 602
+ KCAYRA YSDGKLKAPPKPCAGNQGTQITVEDLFYNISTRRKALKNPSEEYGKILEVV
Sbjct: 121 EAKCAYRATYSDGKLKAPPKPCAGNQGTQITVEDLFYNISTRRKALKNPSEEYGKILEVV 180
Query: 603 GRYSIHNSGISFSVKKQGETVADVRTLPNATTVDNIRSIFGNAVSRELIEVECEDKTLAF 782
GRYSIHNSGISFSVKKQGETVADVRTLPNATTVDNIRSIFGNAVSRELIEV CEDKTLAF
Sbjct: 181 GRYSIHNSGISFSVKKQGETVADVRTLPNATTVDNIRSIFGNAVSRELIEVGCEDKTLAF 240
Query: 783 KMNGYISNANYSVKKCIFLLFINHRLVESTSXRKA 887
KMNGYISNANYSVKKCIFLLFINHRLVESTS RKA
Sbjct: 241 KMNGYISNANYSVKKCIFLLFINHRLVESTSLRKA 275
Score = 90.1 bits (222), Expect(3) = e-169
Identities = 43/50 (86%), Positives = 45/50 (90%)
Frame = +1
Query: 919 NTHPVLYLSLEISPQNVXVNVQPTKHEVHFLHEDRILERVQQPIENRLLG 1068
NTHP LYLSLEISPQNV VNV PTKHEVHFLHED ILERVQQ IE++LLG
Sbjct: 287 NTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEDSILERVQQHIESKLLG 336
Score = 26.6 bits (57), Expect(3) = e-169
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +2
Query: 875 LXKSIETVYAAYLLKTHIP 931
L K+IETVYAAYL K P
Sbjct: 272 LRKAIETVYAAYLPKNTHP 290
>ref|XP_859279.1| PREDICTED: similar to MutL protein homolog 1 isoform 5 [Canis
familiaris].
Length = 688
Score = 520 bits (1338), Expect(3) = e-169
Identities = 267/275 (97%), Positives = 268/275 (97%)
Frame = +3
Query: 63 MSQVPGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQ 242
MS V GVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQ
Sbjct: 1 MSLVAGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQ 60
Query: 243 IQDNGTGIRKEDLDIVCERFTTSKLQSFEDLAHISTYGFRGEALASISHVAHVTITTKTA 422
IQDNGTGIRKEDLDIVCERFTTSKLQSFEDLA ISTYGFRGEALASISHVAHVTITTKTA
Sbjct: 61 IQDNGTGIRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTA 120
Query: 423 DGKCAYRAHYSDGKLKAPPKPCAGNQGTQITVEDLFYNISTRRKALKNPSEEYGKILEVV 602
+ KCAYRA YSDGKLKAPPKPCAGNQGTQITVEDLFYNISTRRKALKNPSEEYGKILEVV
Sbjct: 121 EAKCAYRATYSDGKLKAPPKPCAGNQGTQITVEDLFYNISTRRKALKNPSEEYGKILEVV 180
Query: 603 GRYSIHNSGISFSVKKQGETVADVRTLPNATTVDNIRSIFGNAVSRELIEVECEDKTLAF 782
GRYSIHNSGISFSVKKQGETVADVRTLPNATTVDNIRSIFGNAVSRELIEV CEDKTLAF
Sbjct: 181 GRYSIHNSGISFSVKKQGETVADVRTLPNATTVDNIRSIFGNAVSRELIEVGCEDKTLAF 240
Query: 783 KMNGYISNANYSVKKCIFLLFINHRLVESTSXRKA 887
KMNGYISNANYSVKKCIFLLFINHRLVESTS RKA
Sbjct: 241 KMNGYISNANYSVKKCIFLLFINHRLVESTSLRKA 275
Score = 90.1 bits (222), Expect(3) = e-169
Identities = 43/50 (86%), Positives = 45/50 (90%)
Frame = +1
Query: 919 NTHPVLYLSLEISPQNVXVNVQPTKHEVHFLHEDRILERVQQPIENRLLG 1068
NTHP LYLSLEISPQNV VNV PTKHEVHFLHED ILERVQQ IE++LLG
Sbjct: 287 NTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEDSILERVQQHIESKLLG 336
Score = 26.6 bits (57), Expect(3) = e-169
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +2
Query: 875 LXKSIETVYAAYLLKTHIP 931
L K+IETVYAAYL K P
Sbjct: 272 LRKAIETVYAAYLPKNTHP 290
>ref|XP_859114.1| PREDICTED: similar to MutL protein homolog 1 isoform 2 [Canis
familiaris].
Length = 495
Score = 520 bits (1338), Expect(3) = e-169
Identities = 267/275 (97%), Positives = 268/275 (97%)
Frame = +3
Query: 63 MSQVPGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQ 242
MS V GVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQ
Sbjct: 1 MSLVAGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQ 60
Query: 243 IQDNGTGIRKEDLDIVCERFTTSKLQSFEDLAHISTYGFRGEALASISHVAHVTITTKTA 422
IQDNGTGIRKEDLDIVCERFTTSKLQSFEDLA ISTYGFRGEALASISHVAHVTITTKTA
Sbjct: 61 IQDNGTGIRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTA 120
Query: 423 DGKCAYRAHYSDGKLKAPPKPCAGNQGTQITVEDLFYNISTRRKALKNPSEEYGKILEVV 602
+ KCAYRA YSDGKLKAPPKPCAGNQGTQITVEDLFYNISTRRKALKNPSEEYGKILEVV
Sbjct: 121 EAKCAYRATYSDGKLKAPPKPCAGNQGTQITVEDLFYNISTRRKALKNPSEEYGKILEVV 180
Query: 603 GRYSIHNSGISFSVKKQGETVADVRTLPNATTVDNIRSIFGNAVSRELIEVECEDKTLAF 782
GRYSIHNSGISFSVKKQGETVADVRTLPNATTVDNIRSIFGNAVSRELIEV CEDKTLAF
Sbjct: 181 GRYSIHNSGISFSVKKQGETVADVRTLPNATTVDNIRSIFGNAVSRELIEVGCEDKTLAF 240
Query: 783 KMNGYISNANYSVKKCIFLLFINHRLVESTSXRKA 887
KMNGYISNANYSVKKCIFLLFINHRLVESTS RKA
Sbjct: 241 KMNGYISNANYSVKKCIFLLFINHRLVESTSLRKA 275
Score = 90.1 bits (222), Expect(3) = e-169
Identities = 43/50 (86%), Positives = 45/50 (90%)
Frame = +1
Query: 919 NTHPVLYLSLEISPQNVXVNVQPTKHEVHFLHEDRILERVQQPIENRLLG 1068
NTHP LYLSLEISPQNV VNV PTKHEVHFLHED ILERVQQ IE++LLG
Sbjct: 287 NTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEDSILERVQQHIESKLLG 336
Score = 26.6 bits (57), Expect(3) = e-169
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +2
Query: 875 LXKSIETVYAAYLLKTHIP 931
L K+IETVYAAYL K P
Sbjct: 272 LRKAIETVYAAYLPKNTHP 290
>ref|XP_859237.1| PREDICTED: similar to MutL protein homolog 1 isoform 4 [Canis
familiaris].
Length = 724
Score = 440 bits (1131), Expect(3) = e-145
Identities = 235/275 (85%), Positives = 236/275 (85%)
Frame = +3
Query: 63 MSQVPGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQ 242
MS V GVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQ
Sbjct: 1 MSLVAGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQ 60
Query: 243 IQDNGTGIRKEDLDIVCERFTTSKLQSFEDLAHISTYGFRGEALASISHVAHVTITTKTA 422
IQDNGTGIR ALASISHVAHVTITTKTA
Sbjct: 61 IQDNGTGIR---------------------------------ALASISHVAHVTITTKTA 87
Query: 423 DGKCAYRAHYSDGKLKAPPKPCAGNQGTQITVEDLFYNISTRRKALKNPSEEYGKILEVV 602
+ KCAYRA YSDGKLKAPPKPCAGNQGTQITVEDLFYNISTRRKALKNPSEEYGKILEVV
Sbjct: 88 EAKCAYRATYSDGKLKAPPKPCAGNQGTQITVEDLFYNISTRRKALKNPSEEYGKILEVV 147
Query: 603 GRYSIHNSGISFSVKKQGETVADVRTLPNATTVDNIRSIFGNAVSRELIEVECEDKTLAF 782
GRYSIHNSGISFSVKKQGETVADVRTLPNATTVDNIRSIFGNAVSRELIEV CEDKTLAF
Sbjct: 148 GRYSIHNSGISFSVKKQGETVADVRTLPNATTVDNIRSIFGNAVSRELIEVGCEDKTLAF 207
Query: 783 KMNGYISNANYSVKKCIFLLFINHRLVESTSXRKA 887
KMNGYISNANYSVKKCIFLLFINHRLVESTS RKA
Sbjct: 208 KMNGYISNANYSVKKCIFLLFINHRLVESTSLRKA 242
Score = 90.1 bits (222), Expect(3) = e-145
Identities = 43/50 (86%), Positives = 45/50 (90%)
Frame = +1
Query: 919 NTHPVLYLSLEISPQNVXVNVQPTKHEVHFLHEDRILERVQQPIENRLLG 1068
NTHP LYLSLEISPQNV VNV PTKHEVHFLHED ILERVQQ IE++LLG
Sbjct: 254 NTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEDSILERVQQHIESKLLG 303
Score = 26.6 bits (57), Expect(3) = e-145
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +2
Query: 875 LXKSIETVYAAYLLKTHIP 931
L K+IETVYAAYL K P
Sbjct: 239 LRKAIETVYAAYLPKNTHP 257
>ref|XP_859198.1| PREDICTED: similar to MutL protein homolog 1 isoform 3 [Canis
familiaris].
Length = 516
Score = 90.1 bits (222), Expect(3) = 1e-34
Identities = 43/50 (86%), Positives = 45/50 (90%)
Frame = +1
Query: 919 NTHPVLYLSLEISPQNVXVNVQPTKHEVHFLHEDRILERVQQPIENRLLG 1068
NTHP LYLSLEISPQNV VNV PTKHEVHFLHED ILERVQQ IE++LLG
Sbjct: 46 NTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEDSILERVQQHIESKLLG 95
Score = 69.3 bits (168), Expect(3) = 1e-34
Identities = 33/34 (97%), Positives = 33/34 (97%)
Frame = +3
Query: 786 MNGYISNANYSVKKCIFLLFINHRLVESTSXRKA 887
MNGYISNANYSVKKCIFLLFINHRLVESTS RKA
Sbjct: 1 MNGYISNANYSVKKCIFLLFINHRLVESTSLRKA 34
Score = 26.6 bits (57), Expect(3) = 1e-34
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +2
Query: 875 LXKSIETVYAAYLLKTHIP 931
L K+IETVYAAYL K P
Sbjct: 31 LRKAIETVYAAYLPKNTHP 49
>ref|XP_536879.2| PREDICTED: similar to PMS1 protein homolog 2 (DNA mismatch repair
protein PMS2) [Canis familiaris].
Length = 876
Score = 137 bits (345), Expect = 2e-32
Identities = 92/291 (31%), Positives = 160/291 (54%), Gaps = 27/291 (9%)
Frame = +3
Query: 66 SQVPGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQI 245
+++ I+ +D V++I +G+V+ + A+KE++EN +DA +T+I + +K+ G+ I++
Sbjct: 19 TELAKAIKPIDRKSVHQICSGQVVLSLSTAVKELVENSVDAGATNIDLKLKDYGVDFIEV 78
Query: 246 QDNGTGIRKEDLDIVCERFTTSKLQSFEDLAHISTYGFRGEALASISHVAHVTITTKTAD 425
DNG G+++E+ + + + TSK+Q F DL + T+GFRGEAL+S+ ++ VTI+T
Sbjct: 79 SDNGCGVKEENFEGLTLKHHTSKIQDFADLTQVETFGFRGEALSSLCALSDVTISTCHTS 138
Query: 426 GKCAYRAHYS-DGKL--KAP-PKPCAGNQGTQITVEDLFYNISTRRKAL-KNPSEEYGKI 590
K R + +GK+ K P P+P +GT ++V+ LFY + R K +N +EY K+
Sbjct: 139 AKVGTRLAFDHNGKIVQKTPHPRP----RGTTVSVQQLFYTLPVRHKEFQRNIKKEYAKM 194
Query: 591 LEVVGRYSIHNSGISFSVKK---QGETVADVRTLPNATTVDNIRSIFGNAVSRELI---- 749
++V+ Y I + GI S QG V T +++ +NI S+FG + LI
Sbjct: 195 VQVLHAYCIISVGIRISCSNQVGQGRRQLVVCTSGSSSVKENIGSVFGQKQLQSLIPFVQ 254
Query: 750 ----EVECEDKTL--------AFKMNGYISNANYSVKKCIF---LLFINHR 857
+ CE+ L F ++G+IS+ + V + FIN R
Sbjct: 255 LPPSDSVCEEYGLNRADVLHSRFHISGFISHCAHGVGRSSTDRQFFFINRR 305
>ref|XP_536002.1| PREDICTED: similar to PMS1 protein homolog 1 (DNA mismatch repair
protein PMS1) isoform 1 [Canis familiaris].
Length = 930
Score = 124 bits (312), Expect = 1e-28
Identities = 91/308 (29%), Positives = 150/308 (48%), Gaps = 20/308 (6%)
Frame = +3
Query: 84 IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQIQDNGTG 263
+++L V +++ ++I + +KE++EN LDA +TSI V ++ G I+++DNG G
Sbjct: 1 MKQLPAATVRLLSSSQIITSVVSVVKELLENSLDAGATSIDVKLENYGFDKIEVRDNGEG 60
Query: 264 IRKEDLDIVCERFTTSKLQSFEDLAHISTYGFRGEALASISHVAHVTITTKTADGKCAYR 443
I+ D ++ ++ TSK+ S EDL +++TYGFRGEAL SI VA V ITT+TA + +
Sbjct: 61 IKAIDAPVMAVKYYTSKINSHEDLENLTTYGFRGEALGSICCVAEVLITTRTASDNFSTQ 120
Query: 444 AHYSDGKLKAPPKPCAGNQGTQITVEDLFYNISTRRK---ALKNPSEEYGKILEVVGRYS 614
KP QGT +TV LF N+ R++ K +E K+ +++ Y
Sbjct: 121 YVLDGSGHIISQKPSHLGQGTTVTVLKLFKNLPVRKQFYSTAKKCKDEIKKVQDLLISYG 180
Query: 615 ----------IHNSGISFSVKKQGETVADVRTLPNATTVDNIRSIFGNAVSRELIEVECE 764
IHN + + Q V+D + +R++ G AV + +
Sbjct: 181 ILKPELRIVFIHNKAVIW----QKTRVSDRQVA--------LRAVLGTAVMGNMEPFQYH 228
Query: 765 DKTLAFKMNGYI-------SNANYSVKKCIFLLFINHRLVESTSXRKA*KRCMQLICLKH 923
+ ++G++ S+ + S + F +FIN+R V K + L CLK
Sbjct: 229 PEDSQIYLSGFLPKHDVDHSSTSLSTPERSF-IFINNRPVHQKDILKLIRHYYNLKCLKE 287
Query: 924 TSRPVPQF 947
SR P F
Sbjct: 288 ASRLYPIF 295
>ref|XP_855680.1| PREDICTED: similar to PMS1 protein homolog 1 (DNA mismatch repair
protein PMS1) isoform 2 [Canis familiaris].
Length = 891
Score = 112 bits (281), Expect = 5e-25
Identities = 64/181 (35%), Positives = 103/181 (56%), Gaps = 3/181 (1%)
Frame = +3
Query: 84 IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQIQDNGTG 263
+++L V +++ ++I + +KE++EN LDA +TSI V ++ G I+++DNG G
Sbjct: 1 MKQLPAATVRLLSSSQIITSVVSVVKELLENSLDAGATSIDVKLENYGFDKIEVRDNGEG 60
Query: 264 IRKEDLDIVCERFTTSKLQSFEDLAHISTYGFRGEALASISHVAHVTITTKTADGKCAYR 443
I+ D ++ ++ TSK+ S EDL +++TYGFRGEAL SI VA V ITT+TA + +
Sbjct: 61 IKAIDAPVMAVKYYTSKINSHEDLENLTTYGFRGEALGSICCVAEVLITTRTASDNFSTQ 120
Query: 444 AHYSDGKLKAPPKPCAGNQGTQITVEDLFYNISTRRK---ALKNPSEEYGKILEVVGRYS 614
KP QGT +TV LF N+ R++ K +E K+ +++ Y
Sbjct: 121 YVLDGSGHIISQKPSHLGQGTTVTVLKLFKNLPVRKQFYSTAKKCKDEIKKVQDLLISYG 180
Query: 615 I 617
I
Sbjct: 181 I 181
>ref|XP_868128.1| PREDICTED: similar to DNA mismatch repair protein Mlh3 (MutL
protein homolog 3) isoform 5 [Canis familiaris].
Length = 1424
Score = 111 bits (277), Expect = 1e-24
Identities = 86/274 (31%), Positives = 140/274 (51%), Gaps = 6/274 (2%)
Frame = +3
Query: 81 VIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQIQDNGT 260
+I L V R+ +G I ++E++ N +DA++ + V V + +Q+ DNG
Sbjct: 1 MIECLSVEVQARLRSGLAICSLGQCVEELVLNSIDAEAKCVAVRVNMETFQ-VQVIDNGF 59
Query: 261 GIRKEDLDIVCERFTTSKLQSFEDLAHISTYGFRGEALASISHVAH-VTITTKTADGKCA 437
G+ +D+D V R+ TSK S +DL + YGFRGEALASI+ +A V I++K
Sbjct: 60 GMGSDDIDKVGNRYFTSKCNSIQDLENPRFYGFRGEALASIADMASAVEISSKKNRTMKT 119
Query: 438 YRAHYSDGKLKAPPKPCAGN-----QGTQITVEDLFYNISTRRKALKNPSEEYGKILEVV 602
+ + +GK K C N GT +TV +LFY + RRK + +P E+ K+ + +
Sbjct: 120 FVKLFQNGKAL---KACEANLTRPSAGTTVTVYNLFYQLPVRRKCM-DPRLEFEKVRQRI 175
Query: 603 GRYSIHNSGISFSVKKQGETVADVRTLPNATTVDNIRSIFGNAVSRELIEVECEDKTLAF 782
S+ + ISFS++ ++ I+G S++L E++ + K F
Sbjct: 176 EALSLMHPSISFSLRNDVSGSMVLQVPKTKDVCSRFCQIYGLGKSQKLREIKFKYK--EF 233
Query: 783 KMNGYISNANYSVKKCIFLLFINHRLVESTSXRK 884
+++GYIS+ + K F LF+N RLV T K
Sbjct: 234 ELSGYISSEAHYNKNMQF-LFVNKRLVLRTKLHK 266
>ref|XP_537511.2| PREDICTED: similar to DNA mismatch repair protein Mlh3 (MutL
protein homolog 3) isoform 1 [Canis familiaris].
Length = 1456
Score = 111 bits (277), Expect = 1e-24
Identities = 86/274 (31%), Positives = 140/274 (51%), Gaps = 6/274 (2%)
Frame = +3
Query: 81 VIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQIQDNGT 260
+I L V R+ +G I ++E++ N +DA++ + V V + +Q+ DNG
Sbjct: 1 MIECLSVEVQARLRSGLAICSLGQCVEELVLNSIDAEAKCVAVRVNMETFQ-VQVIDNGF 59
Query: 261 GIRKEDLDIVCERFTTSKLQSFEDLAHISTYGFRGEALASISHVAH-VTITTKTADGKCA 437
G+ +D+D V R+ TSK S +DL + YGFRGEALASI+ +A V I++K
Sbjct: 60 GMGSDDIDKVGNRYFTSKCNSIQDLENPRFYGFRGEALASIADMASAVEISSKKNRTMKT 119
Query: 438 YRAHYSDGKLKAPPKPCAGN-----QGTQITVEDLFYNISTRRKALKNPSEEYGKILEVV 602
+ + +GK K C N GT +TV +LFY + RRK + +P E+ K+ + +
Sbjct: 120 FVKLFQNGKAL---KACEANLTRPSAGTTVTVYNLFYQLPVRRKCM-DPRLEFEKVRQRI 175
Query: 603 GRYSIHNSGISFSVKKQGETVADVRTLPNATTVDNIRSIFGNAVSRELIEVECEDKTLAF 782
S+ + ISFS++ ++ I+G S++L E++ + K F
Sbjct: 176 EALSLMHPSISFSLRNDVSGSMVLQVPKTKDVCSRFCQIYGLGKSQKLREIKFKYK--EF 233
Query: 783 KMNGYISNANYSVKKCIFLLFINHRLVESTSXRK 884
+++GYIS+ + K F LF+N RLV T K
Sbjct: 234 ELSGYISSEAHYNKNMQF-LFVNKRLVLRTKLHK 266
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,539,468
Number of extensions: 1253456
Number of successful extensions: 3119
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 3112
Number of HSP's successfully gapped: 22
Length of query: 356
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 252
Effective length of database: 15,407,560
Effective search space: 3882705120
Effective search space used: 3882705120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-014259
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014259
(1070 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069462.2| MutL protein homolog 1 [Bos taurus]. 527 e-171
Alignment gi|XP_002696983.1| PREDICTED: mutL homolog 1, colon cancer, non... 527 e-171
Alignment gi|XP_001790604.1| PREDICTED: MutL protein homolog 1 [Bos tauru... 527 e-171
Alignment gi|NP_001192867.1| mismatch repair endonuclease PMS2 [Bos tauru... 134 1e-31
Alignment gi|XP_002698266.1| PREDICTED: PMS2 postmeiotic segregation incr... 134 1e-31
Alignment gi|NP_001071449.1| PMS1 protein homolog 1 [Bos taurus]. 127 2e-29
>ref|NP_001069462.2| MutL protein homolog 1 [Bos taurus].
Length = 758
Score = 527 bits (1357), Expect(3) = e-171
Identities = 267/275 (97%), Positives = 270/275 (98%)
Frame = +3
Query: 63 MSQVPGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQ 242
MS V GVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQ
Sbjct: 1 MSLVAGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQ 60
Query: 243 IQDNGTGIRKEDLDIVCERFTTSKLQSFEDLAHISTYGFRGEALASISHVAHVTITTKTA 422
IQDNGTGIRKEDL+IVCERFTTSKLQSFEDLAHISTYGFRGEALASISHVAHVTITTKTA
Sbjct: 61 IQDNGTGIRKEDLEIVCERFTTSKLQSFEDLAHISTYGFRGEALASISHVAHVTITTKTA 120
Query: 423 DGKCAYRAHYSDGKLKAPPKPCAGNQGTQITVEDLFYNISTRRKALKNPSEEYGKILEVV 602
DGKCAYRAHYSDGKLKAPPKPCAGNQGTQITVEDLFYNISTRRKALKNPSEEYGKILEVV
Sbjct: 121 DGKCAYRAHYSDGKLKAPPKPCAGNQGTQITVEDLFYNISTRRKALKNPSEEYGKILEVV 180
Query: 603 GRYSIHNSGISFSVKKQGETVADVRTLPNATTVDNIRSIFGNAVSRELIEVECEDKTLAF 782
GRY++HNSGI FSVKKQGETVADVRTLPNATTVDNIRSIFGNAVSRELIEVECEDKTLAF
Sbjct: 181 GRYAVHNSGIGFSVKKQGETVADVRTLPNATTVDNIRSIFGNAVSRELIEVECEDKTLAF 240
Query: 783 KMNGYISNANYSVKKCIFLLFINHRLVESTSXRKA 887
KMNGYISNANYSVKKCIFLLFINHRLVES S RKA
Sbjct: 241 KMNGYISNANYSVKKCIFLLFINHRLVESASLRKA 275
Score = 88.2 bits (217), Expect(3) = e-171
Identities = 42/50 (84%), Positives = 45/50 (90%)
Frame = +1
Query: 919 NTHPVLYLSLEISPQNVXVNVQPTKHEVHFLHEDRILERVQQPIENRLLG 1068
+THP LYLSLEISPQNV VNV PTKHEVHFLHED ILER+QQ IE+RLLG
Sbjct: 287 STHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEDSILERLQQHIESRLLG 336
Score = 26.9 bits (58), Expect(3) = e-171
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +2
Query: 875 LXKSIETVYAAYLLKTHIP 931
L K+IETVYAAYL K+ P
Sbjct: 272 LRKAIETVYAAYLPKSTHP 290
>ref|XP_002696983.1| PREDICTED: mutL homolog 1, colon cancer, nonpolyposis type 2 (E.
coli) [Bos taurus].
Length = 758
Score = 527 bits (1357), Expect(3) = e-171
Identities = 267/275 (97%), Positives = 270/275 (98%)
Frame = +3
Query: 63 MSQVPGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQ 242
MS V GVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQ
Sbjct: 1 MSLVAGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQ 60
Query: 243 IQDNGTGIRKEDLDIVCERFTTSKLQSFEDLAHISTYGFRGEALASISHVAHVTITTKTA 422
IQDNGTGIRKEDL+IVCERFTTSKLQSFEDLAHISTYGFRGEALASISHVAHVTITTKTA
Sbjct: 61 IQDNGTGIRKEDLEIVCERFTTSKLQSFEDLAHISTYGFRGEALASISHVAHVTITTKTA 120
Query: 423 DGKCAYRAHYSDGKLKAPPKPCAGNQGTQITVEDLFYNISTRRKALKNPSEEYGKILEVV 602
DGKCAYRAHYSDGKLKAPPKPCAGNQGTQITVEDLFYNISTRRKALKNPSEEYGKILEVV
Sbjct: 121 DGKCAYRAHYSDGKLKAPPKPCAGNQGTQITVEDLFYNISTRRKALKNPSEEYGKILEVV 180
Query: 603 GRYSIHNSGISFSVKKQGETVADVRTLPNATTVDNIRSIFGNAVSRELIEVECEDKTLAF 782
GRY++HNSGI FSVKKQGETVADVRTLPNATTVDNIRSIFGNAVSRELIEVECEDKTLAF
Sbjct: 181 GRYAVHNSGIGFSVKKQGETVADVRTLPNATTVDNIRSIFGNAVSRELIEVECEDKTLAF 240
Query: 783 KMNGYISNANYSVKKCIFLLFINHRLVESTSXRKA 887
KMNGYISNANYSVKKCIFLLFINHRLVES S RKA
Sbjct: 241 KMNGYISNANYSVKKCIFLLFINHRLVESASLRKA 275
Score = 88.2 bits (217), Expect(3) = e-171
Identities = 42/50 (84%), Positives = 45/50 (90%)
Frame = +1
Query: 919 NTHPVLYLSLEISPQNVXVNVQPTKHEVHFLHEDRILERVQQPIENRLLG 1068
+THP LYLSLEISPQNV VNV PTKHEVHFLHED ILER+QQ IE+RLLG
Sbjct: 287 STHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEDSILERLQQHIESRLLG 336
Score = 26.9 bits (58), Expect(3) = e-171
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +2
Query: 875 LXKSIETVYAAYLLKTHIP 931
L K+IETVYAAYL K+ P
Sbjct: 272 LRKAIETVYAAYLPKSTHP 290
>ref|XP_001790604.1| PREDICTED: MutL protein homolog 1 [Bos taurus].
Length = 758
Score = 527 bits (1357), Expect(3) = e-171
Identities = 267/275 (97%), Positives = 270/275 (98%)
Frame = +3
Query: 63 MSQVPGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQ 242
MS V GVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQ
Sbjct: 1 MSLVAGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQ 60
Query: 243 IQDNGTGIRKEDLDIVCERFTTSKLQSFEDLAHISTYGFRGEALASISHVAHVTITTKTA 422
IQDNGTGIRKEDL+IVCERFTTSKLQSFEDLAHISTYGFRGEALASISHVAHVTITTKTA
Sbjct: 61 IQDNGTGIRKEDLEIVCERFTTSKLQSFEDLAHISTYGFRGEALASISHVAHVTITTKTA 120
Query: 423 DGKCAYRAHYSDGKLKAPPKPCAGNQGTQITVEDLFYNISTRRKALKNPSEEYGKILEVV 602
DGKCAYRAHYSDGKLKAPPKPCAGNQGTQITVEDLFYNISTRRKALKNPSEEYGKILEVV
Sbjct: 121 DGKCAYRAHYSDGKLKAPPKPCAGNQGTQITVEDLFYNISTRRKALKNPSEEYGKILEVV 180
Query: 603 GRYSIHNSGISFSVKKQGETVADVRTLPNATTVDNIRSIFGNAVSRELIEVECEDKTLAF 782
GRY++HNSGI FSVKKQGETVADVRTLPNATTVDNIRSIFGNAVSRELIEVECEDKTLAF
Sbjct: 181 GRYAVHNSGIGFSVKKQGETVADVRTLPNATTVDNIRSIFGNAVSRELIEVECEDKTLAF 240
Query: 783 KMNGYISNANYSVKKCIFLLFINHRLVESTSXRKA 887
KMNGYISNANYSVKKCIFLLFINHRLVES S RKA
Sbjct: 241 KMNGYISNANYSVKKCIFLLFINHRLVESASLRKA 275
Score = 88.2 bits (217), Expect(3) = e-171
Identities = 42/50 (84%), Positives = 45/50 (90%)
Frame = +1
Query: 919 NTHPVLYLSLEISPQNVXVNVQPTKHEVHFLHEDRILERVQQPIENRLLG 1068
+THP LYLSLEISPQNV VNV PTKHEVHFLHED ILER+QQ IE+RLLG
Sbjct: 287 STHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEDSILERLQQHIESRLLG 336
Score = 26.9 bits (58), Expect(3) = e-171
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +2
Query: 875 LXKSIETVYAAYLLKTHIP 931
L K+IETVYAAYL K+ P
Sbjct: 272 LRKAIETVYAAYLPKSTHP 290
>ref|NP_001192867.1| mismatch repair endonuclease PMS2 [Bos taurus].
Length = 864
Score = 134 bits (338), Expect = 1e-31
Identities = 91/291 (31%), Positives = 163/291 (56%), Gaps = 27/291 (9%)
Frame = +3
Query: 66 SQVPGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQI 245
S++ I+ +D V++I +G+V+ + A+KE++EN +DA +TSI + +K+ G++LI++
Sbjct: 9 SELAKAIKPIDRKSVHQICSGQVVLGLSTAVKELVENSVDAGATSIDLRLKDYGVELIEV 68
Query: 246 QDNGTGIRKEDLDIVCERFTTSKLQSFEDLAHISTYGFRGEALASISHVAHVTITTKTAD 425
DNG G+ +E+ + + + TSK+Q F DL + T+GFRGEAL+S+ ++ VTI+T
Sbjct: 69 SDNGCGVEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHTS 128
Query: 426 GKCAYRAHYS-DGKL--KAP-PKPCAGNQGTQITVEDLFYNISTRRKAL-KNPSEEYGKI 590
K R + +GK+ K P P+P +GT ++V+ LFY + R K +N +E+ K+
Sbjct: 129 VKVGTRLVFDHNGKILQKTPYPRP----RGTTVSVQQLFYTLPVRHKEFQRNIKKEFAKM 184
Query: 591 LEVVGRYSIHNSGISFSVKK---QGETVADVRTLPNATTVDNIRSIFGNAVSRELI---- 749
++V+ Y I ++G+ S QG+ V T +++ +NI +FG + LI
Sbjct: 185 VQVLQAYCIISAGVRISCTNQVGQGKRQPVVCTSGSSSMKENIGLVFGQKQLQSLIPFVQ 244
Query: 750 ----EVECEDKTLA--------FKMNGYISNANYSVKKCIF---LLFINHR 857
+ CE+ L+ F ++G++S+ + V + FIN R
Sbjct: 245 LPPSDSICEEYGLSCSQALHNLFCISGFVSHCAHGVGRSSTDRQFFFINRR 295
>ref|XP_002698266.1| PREDICTED: PMS2 postmeiotic segregation increased 2 (S. cerevisiae)
[Bos taurus].
Length = 864
Score = 134 bits (338), Expect = 1e-31
Identities = 91/291 (31%), Positives = 163/291 (56%), Gaps = 27/291 (9%)
Frame = +3
Query: 66 SQVPGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQI 245
S++ I+ +D V++I +G+V+ + A+KE++EN +DA +TSI + +K+ G++LI++
Sbjct: 9 SELAKAIKPIDRKSVHQICSGQVVLGLSTAVKELVENSVDAGATSIDLRLKDYGVELIEV 68
Query: 246 QDNGTGIRKEDLDIVCERFTTSKLQSFEDLAHISTYGFRGEALASISHVAHVTITTKTAD 425
DNG G+ +E+ + + + TSK+Q F DL + T+GFRGEAL+S+ ++ VTI+T
Sbjct: 69 SDNGCGVEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHTS 128
Query: 426 GKCAYRAHYS-DGKL--KAP-PKPCAGNQGTQITVEDLFYNISTRRKAL-KNPSEEYGKI 590
K R + +GK+ K P P+P +GT ++V+ LFY + R K +N +E+ K+
Sbjct: 129 VKVGTRLVFDHNGKILQKTPYPRP----RGTTVSVQQLFYTLPVRHKEFQRNIKKEFAKM 184
Query: 591 LEVVGRYSIHNSGISFSVKK---QGETVADVRTLPNATTVDNIRSIFGNAVSRELI---- 749
++V+ Y I ++G+ S QG+ V T +++ +NI +FG + LI
Sbjct: 185 VQVLQAYCIISAGVRISCTNQVGQGKRQPVVCTSGSSSMKENIGLVFGQKQLQSLIPFVQ 244
Query: 750 ----EVECEDKTLA--------FKMNGYISNANYSVKKCIF---LLFINHR 857
+ CE+ L+ F ++G++S+ + V + FIN R
Sbjct: 245 LPPSDSICEEYGLSCSQALHNLFCISGFVSHCAHGVGRSSTDRQFFFINRR 295
>ref|NP_001071449.1| PMS1 protein homolog 1 [Bos taurus].
Length = 932
Score = 127 bits (319), Expect = 2e-29
Identities = 96/309 (31%), Positives = 154/309 (49%), Gaps = 21/309 (6%)
Frame = +3
Query: 84 IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQIQDNGTG 263
+++L V +++ +VI + +KE+IEN LDA++TSI V ++ G I+++DNG G
Sbjct: 1 MKQLSAATVRLLSSSQVITSVVSVVKELIENSLDARATSIDVKLENYGFDKIEVRDNGEG 60
Query: 264 IRKEDLDIVCERFTTSKLQSFEDLAHISTYGFRGEALASISHVAHVTITTKTADGKCAYR 443
I+ D ++ ++ TSK+ S EDL +++TYGFRGEAL SI +A V+ITTKTA + +
Sbjct: 61 IKAIDAPVMAVKYYTSKISSHEDLENLTTYGFRGEALGSICCIAEVSITTKTAADNFSTQ 120
Query: 444 AHYSDGKLKAPPKPCAGNQGTQITVEDLFYNISTRRK---ALKNPSEEYGKILEVVGRYS 614
G KP QGT +T LF N+ R++ K +E KI +++ Y
Sbjct: 121 YVLDGGGHIISQKPSHLGQGTTVTALRLFKNLPVRKQFYSTAKKCKDEIKKIQDLLISYG 180
Query: 615 ----------IHNSGISFSVKKQGETVADVRTLPNATTVDNIRSIFGNAV--SRELIEVE 758
IHN I + Q V+D + + S+ G AV + E +
Sbjct: 181 ILKPDVRIVFIHNKAIIW----QKTRVSDHKMA--------LMSVLGTAVMGNMESFQYH 228
Query: 759 CEDKTLAFKMNGYI--SNANYSVKKCI----FLLFINHRLVESTSXRKA*KRCMQLICLK 920
CE+ + ++G++ +A++S +FIN R V K + L CLK
Sbjct: 229 CEESQIF--LSGFLPKHDADHSCTSLSTPERSFIFINSRPVHQKDILKLIRHYYNLKCLK 286
Query: 921 HTSRPVPQF 947
++R P F
Sbjct: 287 ESTRLYPIF 295
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,683,516
Number of extensions: 1215450
Number of successful extensions: 2814
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2813
Number of HSP's successfully gapped: 12
Length of query: 356
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 253
Effective length of database: 14,273,310
Effective search space: 3611147430
Effective search space used: 3611147430
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014259
(1070 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001165838.1| DNA mismatch repair protein Mlh1 [Sus scrofa]. 537 e-175
Alignment gi|XP_003124331.1| PREDICTED: mismatch repair endonuclease PMS2... 140 9e-34
Alignment gi|XP_001926322.2| PREDICTED: DNA mismatch repair protein Mlh3 ... 108 5e-24
Alignment gi|XP_003359637.1| PREDICTED: PMS1 protein homolog 1-like [Sus ... 100 2e-21
Alignment gi|XP_003358405.1| PREDICTED: DNA mismatch repair protein Mlh1-... 75 6e-14
>ref|NP_001165838.1| DNA mismatch repair protein Mlh1 [Sus scrofa].
Length = 757
Score = 537 bits (1384), Expect(3) = e-175
Identities = 273/275 (99%), Positives = 273/275 (99%)
Frame = +3
Query: 63 MSQVPGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQ 242
MSQVPGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQ
Sbjct: 1 MSQVPGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQ 60
Query: 243 IQDNGTGIRKEDLDIVCERFTTSKLQSFEDLAHISTYGFRGEALASISHVAHVTITTKTA 422
IQDNGTGIRKEDLDIVCERFTTSKLQSFEDLAHISTYGFRGEALASISHVAHV ITTKTA
Sbjct: 61 IQDNGTGIRKEDLDIVCERFTTSKLQSFEDLAHISTYGFRGEALASISHVAHVAITTKTA 120
Query: 423 DGKCAYRAHYSDGKLKAPPKPCAGNQGTQITVEDLFYNISTRRKALKNPSEEYGKILEVV 602
DGKCAYRAHYSDGKLKAPPKPCAGNQGTQITVEDLFYNISTRRKALKNPSEEYGKILEVV
Sbjct: 121 DGKCAYRAHYSDGKLKAPPKPCAGNQGTQITVEDLFYNISTRRKALKNPSEEYGKILEVV 180
Query: 603 GRYSIHNSGISFSVKKQGETVADVRTLPNATTVDNIRSIFGNAVSRELIEVECEDKTLAF 782
GRYSIHNSGISFSVKKQGETVADVRTLPNATTVDNIRSIFGNAVSRELIEVECEDKTLAF
Sbjct: 181 GRYSIHNSGISFSVKKQGETVADVRTLPNATTVDNIRSIFGNAVSRELIEVECEDKTLAF 240
Query: 783 KMNGYISNANYSVKKCIFLLFINHRLVESTSXRKA 887
KMNGYISNANYSVKKCIFLLFINHRLVESTS RKA
Sbjct: 241 KMNGYISNANYSVKKCIFLLFINHRLVESTSLRKA 275
Score = 91.3 bits (225), Expect(3) = e-175
Identities = 44/50 (88%), Positives = 45/50 (90%)
Frame = +1
Query: 919 NTHPVLYLSLEISPQNVXVNVQPTKHEVHFLHEDRILERVQQPIENRLLG 1068
NTHP LYLSLEISPQNV VNV PTKHEVHFLHED ILERVQQ IE+RLLG
Sbjct: 287 NTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEDSILERVQQHIESRLLG 336
Score = 26.6 bits (57), Expect(3) = e-175
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +2
Query: 875 LXKSIETVYAAYLLKTHIP 931
L K+IETVYAAYL K P
Sbjct: 272 LRKAIETVYAAYLPKNTHP 290
>ref|XP_003124331.1| PREDICTED: mismatch repair endonuclease PMS2 [Sus scrofa].
Length = 852
Score = 140 bits (354), Expect = 9e-34
Identities = 94/291 (32%), Positives = 163/291 (56%), Gaps = 27/291 (9%)
Frame = +3
Query: 66 SQVPGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQI 245
S++ I+ +D V++I +G+V+ + A+KE++EN +DA +T+I + +K+ G+ LI++
Sbjct: 9 SELAKAIKPIDRKSVHQICSGQVVLSLSTAVKELVENSVDAGATNIDLRLKDYGMDLIEV 68
Query: 246 QDNGTGIRKEDLDIVCERFTTSKLQSFEDLAHISTYGFRGEALASISHVAHVTITTKTAD 425
DNG G+ +E+ + + + TSK+Q F DL + T+GFRGEAL+S+ ++ VTI+T A
Sbjct: 69 SDNGCGVEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHAS 128
Query: 426 GKCAYRAHYS-DGKL--KAP-PKPCAGNQGTQITVEDLFYNISTRRKAL-KNPSEEYGKI 590
K R + +GK+ K+P P+P +GT ++V+ LFY + R K +N +E+ K+
Sbjct: 129 AKVGTRLVFDHNGKILQKSPYPRP----RGTTVSVQQLFYTLPVRHKEFQRNIKKEFAKM 184
Query: 591 LEVVGRYSIHNSGISFSVKK---QGETVADVRTLPNATTVDNIRSIFGNAVSRELI---- 749
++V+ Y I +SG+ + QG+ V T A+ +NI S+FG + LI
Sbjct: 185 VQVLHAYCIISSGVRVTCTNQVGQGKRQPVVSTSGGASIKENIGSVFGQKQLQSLISFVQ 244
Query: 750 ----EVECEDKTLA--------FKMNGYISNANYSVKKCIF---LLFINHR 857
+ CE+ L+ F ++G+IS + V + FIN R
Sbjct: 245 LPPSDSVCEEFGLSCSDALHNLFCISGFISRCTHGVGRSSTDRQFFFINRR 295
>ref|XP_001926322.2| PREDICTED: DNA mismatch repair protein Mlh3 isoform 2 [Sus scrofa].
Length = 1456
Score = 108 bits (270), Expect = 5e-24
Identities = 88/272 (32%), Positives = 143/272 (52%), Gaps = 4/272 (1%)
Frame = +3
Query: 81 VIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQIQDNGT 260
+I+ L V R+ +G I ++E+ N +DA++ + V V + +Q+ DNG
Sbjct: 1 MIKCLSVEVQARLRSGLAICSLGQCVEELALNSIDAEAKCVAVRVNMETFQ-VQVIDNGI 59
Query: 261 GIRKEDLDIVCERFTTSKLQSFEDLAHISTYGFRGEALASISHVAH-VTITTKTADGKCA 437
G+ ED+D V R+ TSK S +DL + YGFRGEALASI+ +A V I+++
Sbjct: 60 GMGSEDVDKVGNRYFTSKCNSIQDLENPRFYGFRGEALASIADMASAVEISSRRNKSMKT 119
Query: 438 YRAHYSDGK-LKAPPKPCA-GNQGTQITVEDLFYNISTRRKALKNPSEEYGKILEVVGRY 611
+ + +GK LKA + GT +TV +LFY + RRK + +P E+ K+ + V
Sbjct: 120 FVKLFQNGKALKACEADLTRPSAGTTVTVYNLFYQLPVRRKCM-DPRLEFEKVRQRVEAL 178
Query: 612 SIHNSGISFSVKKQGETVADVRTLPNATTV-DNIRSIFGNAVSRELIEVECEDKTLAFKM 788
S+ + +SFS++ + + V LP + I+G S++L E+ + K F++
Sbjct: 179 SLMHPSVSFSLRND-VSGSMVLQLPKTKDICSRFCQIYGLGKSQKLREINFKYK--EFEL 235
Query: 789 NGYISNANYSVKKCIFLLFINHRLVESTSXRK 884
NG+IS A K + LF+N RL+ T K
Sbjct: 236 NGFIS-AEAHYNKNMQFLFVNKRLILRTKLHK 266
>ref|XP_003359637.1| PREDICTED: PMS1 protein homolog 1-like [Sus scrofa].
Length = 204
Score = 99.8 bits (247), Expect = 2e-21
Identities = 49/113 (43%), Positives = 76/113 (67%)
Frame = +3
Query: 84 IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQIQDNGTG 263
+++L V +++ ++I + +KE+IEN LDA +TSI V ++ G I+++DNG G
Sbjct: 1 MKQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSIDVKLENYGFDKIEVRDNGEG 60
Query: 264 IRKEDLDIVCERFTTSKLQSFEDLAHISTYGFRGEALASISHVAHVTITTKTA 422
I+ D ++ ++ TSK+ S EDL +++TYGFRGEAL SI VA V ITT+TA
Sbjct: 61 IKAVDAPVMAVKYYTSKINSHEDLENLTTYGFRGEALGSICCVAEVLITTRTA 113
>ref|XP_003358405.1| PREDICTED: DNA mismatch repair protein Mlh1-like, partial [Sus
scrofa].
Length = 58
Score = 75.1 bits (183), Expect = 6e-14
Identities = 37/47 (78%), Positives = 39/47 (82%)
Frame = +1
Query: 928 PVLYLSLEISPQNVXVNVQPTKHEVHFLHEDRILERVQQPIENRLLG 1068
P +LEISPQNV VNV PTKHEVHFLHED ILERVQQ IE+RLLG
Sbjct: 2 PSALQNLEISPQNVDVNVHPTKHEVHFLHEDSILERVQQHIESRLLG 48
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,060,553
Number of extensions: 776062
Number of successful extensions: 1891
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1889
Number of HSP's successfully gapped: 7
Length of query: 356
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 256
Effective length of database: 8,854,232
Effective search space: 2266683392
Effective search space used: 2266683392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014259
(1070 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_081086.2| DNA mismatch repair protein Mlh1 [Mus musculus]. 509 e-165
Alignment gi|NP_032912.2| mismatch repair endonuclease PMS2 [Mus musculus]. 133 2e-31
Alignment gi|NP_705784.1| PMS1 protein homolog 1 [Mus musculus]. 126 3e-29
Alignment gi|NP_780546.1| DNA mismatch repair protein Mlh3 [Mus musculus]. 111 1e-24
>ref|NP_081086.2| DNA mismatch repair protein Mlh1 [Mus musculus].
Length = 760
Score = 509 bits (1311), Expect(3) = e-165
Identities = 260/275 (94%), Positives = 266/275 (96%)
Frame = +3
Query: 63 MSQVPGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQ 242
M+ V GVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKST+IQVVVKEGGLKLIQ
Sbjct: 1 MAFVAGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTNIQVVVKEGGLKLIQ 60
Query: 243 IQDNGTGIRKEDLDIVCERFTTSKLQSFEDLAHISTYGFRGEALASISHVAHVTITTKTA 422
IQDNGTGIRKEDLDIVCERFTTSKLQ+FEDLA ISTYGFRGEALASISHVAHVTITTKTA
Sbjct: 61 IQDNGTGIRKEDLDIVCERFTTSKLQTFEDLASISTYGFRGEALASISHVAHVTITTKTA 120
Query: 423 DGKCAYRAHYSDGKLKAPPKPCAGNQGTQITVEDLFYNISTRRKALKNPSEEYGKILEVV 602
DGKCAYRA YSDGKL+APPKPCAGNQGT ITVEDLFYNI TRRKALKNPSEEYGKILEVV
Sbjct: 121 DGKCAYRASYSDGKLQAPPKPCAGNQGTLITVEDLFYNIITRRKALKNPSEEYGKILEVV 180
Query: 603 GRYSIHNSGISFSVKKQGETVADVRTLPNATTVDNIRSIFGNAVSRELIEVECEDKTLAF 782
GRYSIHNSGISFSVKKQGETV+DVRTLPNATTVDNIRSIFGNAVSRELIEV CEDKTLAF
Sbjct: 181 GRYSIHNSGISFSVKKQGETVSDVRTLPNATTVDNIRSIFGNAVSRELIEVGCEDKTLAF 240
Query: 783 KMNGYISNANYSVKKCIFLLFINHRLVESTSXRKA 887
KMNGYISNANYSVKKCIFLLFINHRLVES + RKA
Sbjct: 241 KMNGYISNANYSVKKCIFLLFINHRLVESAALRKA 275
Score = 87.4 bits (215), Expect(3) = e-165
Identities = 41/50 (82%), Positives = 45/50 (90%)
Frame = +1
Query: 919 NTHPVLYLSLEISPQNVXVNVQPTKHEVHFLHEDRILERVQQPIENRLLG 1068
NTHP LYLSLEISPQNV VNV PTKHEVHFLHE+ IL+RVQQ IE++LLG
Sbjct: 287 NTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEESILQRVQQHIESKLLG 336
Score = 26.6 bits (57), Expect(3) = e-165
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +2
Query: 875 LXKSIETVYAAYLLKTHIP 931
L K+IETVYAAYL K P
Sbjct: 272 LRKAIETVYAAYLPKNTHP 290
>ref|NP_032912.2| mismatch repair endonuclease PMS2 [Mus musculus].
Length = 859
Score = 133 bits (335), Expect = 2e-31
Identities = 95/299 (31%), Positives = 160/299 (53%), Gaps = 34/299 (11%)
Frame = +3
Query: 63 MSQVPGV-------IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKE 221
M Q GV I+ +D V++I +G+V+ + A+KE+IEN +DA +T+I + +K+
Sbjct: 1 MEQTEGVSTECAKAIKPIDGKSVHQICSGQVVLSLSTAVKELIENSVDAGATTIDLRLKD 60
Query: 222 GGLKLIQIQDNGTGIRKEDLDIVCERFTTSKLQSFEDLAHISTYGFRGEALASISHVAHV 401
G+ LI++ DNG G+ +E+ + + + TSK+Q F DL + T+GFRGEAL+S+ ++ V
Sbjct: 61 YGVDLIEVSDNGCGVEEENFEGLALKHHTSKIQEFADLTQVETFGFRGEALSSLCALSDV 120
Query: 402 TITTKTADGKCAYRAHYS-DGKL--KAP-PKPCAGNQGTQITVEDLFYNISTRRKAL-KN 566
TI+T R + +GK+ K P P+P +GT ++V+ LFY + R K +N
Sbjct: 121 TISTCHGSASVGTRLVFDHNGKITQKTPYPRP----KGTTVSVQHLFYTLPVRYKEFQRN 176
Query: 567 PSEEYGKILEVVGRYSIHNSGISFSVKK---QGETVADVRTLPNATTVDNIRSIFGNAVS 737
+EY K+++V+ Y I ++G+ S QG+ V T ++ +NI S+FG
Sbjct: 177 IKKEYAKMVQVLQAYCIISAGVRVSCTNQLGQGKRQPVVCTSGSSGMKENIGSVFGQKQL 236
Query: 738 RELI--------EVECEDKTLA--------FKMNGYISNANYSVKKCIF---LLFINHR 857
+ LI + CE+ L+ F ++G+IS + + FIN R
Sbjct: 237 QSLIPFVQLPPSDAVCEEYGLSTSRTPQNLFYVSGFISQCTHGAGRSATDRQFFFINQR 295
>ref|NP_705784.1| PMS1 protein homolog 1 [Mus musculus].
Length = 917
Score = 126 bits (317), Expect = 3e-29
Identities = 87/298 (29%), Positives = 148/298 (49%), Gaps = 10/298 (3%)
Frame = +3
Query: 84 IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQIQDNGTG 263
+++L V +++ + I + +KE+IEN LDA +TSI+V ++ G I+I+DNG G
Sbjct: 1 MKQLPAATVRLLSSSQTITSVVSVVKELIENSLDAGATSIEVKLENYGFDKIEIRDNGEG 60
Query: 264 IRKEDLDIVCERFTTSKLQSFEDLAHISTYGFRGEALASISHVAHVTITTKTADGKCAYR 443
I+ D+ ++ ++ TSK+ S EDL +++TYGFRGEAL SI +VA V +TT+T+ + +
Sbjct: 61 IKAVDVPVMAVKYYTSKISSHEDLGNLTTYGFRGEALGSICNVAEVVVTTRTSADDFSTQ 120
Query: 444 AHYSDGKLKAPPKPCAGNQGTQITVEDLFYNISTRRK---ALKNPSEEYGKILEVVGRYS 614
KP QGT +T LF N+ R++ K +E + +++ Y
Sbjct: 121 YVLDGSGHILSQKPSHLGQGTTVTALKLFKNLPVRKQFYSTAKKCKDELKNVQDLLISYG 180
Query: 615 IHNSGISFSVKKQGETVADVRTLPNATTVDNIRSIFGNAV--SRELIEVECEDKTLAF-- 782
+ + + + +P+ + S+ G AV + E +E CE +
Sbjct: 181 VLKPDVRITFVHNKAVIWQKSRVPDHRMA--LMSVLGTAVMGNMESVEQHCEQSQIYLSG 238
Query: 783 ---KMNGYISNANYSVKKCIFLLFINHRLVESTSXRKA*KRCMQLICLKHTSRPVPQF 947
K + ++ + S + F +FIN R V K +R L CLK ++R P F
Sbjct: 239 FFPKHDADHNSTSLSTPERSF-IFINSRPVHQKDILKLIRRYYNLKCLKESTRLYPIF 295
>ref|NP_780546.1| DNA mismatch repair protein Mlh3 [Mus musculus].
Length = 1411
Score = 111 bits (277), Expect = 1e-24
Identities = 93/303 (30%), Positives = 152/303 (50%), Gaps = 7/303 (2%)
Frame = +3
Query: 81 VIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQIQDNGT 260
+IR L + V ++ +G I ++E+ N +DA++T + + V + +Q+ DNG
Sbjct: 1 MIRCLSDDVKTKLRSGLAISSLGQCVEELTLNSIDAEATCVAIRVNMETFQ-VQVIDNGL 59
Query: 261 GIRKEDLDIVCERFTTSKLQSFEDLAHISTYGFRGEALASISHVA-HVTITTKTADGKCA 437
G+ +D++ V R+ TSK S DL + + YGFRGEALASI+ +A V I++K
Sbjct: 60 GMAGDDVEKVGNRYFTSKCHSVRDLENPAFYGFRGEALASIADMAGAVEISSKKNTTLKT 119
Query: 438 YRAHYSDGKLKAPPKP--CAGNQGTQITVEDLFYNISTRRKALKNPSEEYGKILEVVGRY 611
+ + +GK A + + GT +TV +LFY RRK++ +P E+ K+ + V
Sbjct: 120 FVKMFQNGKALATHEADLTRPSVGTTVTVYNLFYQFPVRRKSM-DPRLEFEKVRQRVEAL 178
Query: 612 SIHNSGISFSVKKQGETVADVRTLPNATTV-DNIRSIFGNAVSRELIEVECEDKTLAFKM 788
S+ + ISFS++ + + V LP + I+G S++L E+ + K F+
Sbjct: 179 SLMHPSISFSLRND-VSGSMVLQLPKTKDICSRFCQIYGLGKSQKLREIRFKYK--EFEF 235
Query: 789 NGYISNANYSVKKCIFLLFINHRLVESTSXRKA*K---RCMQLICLKHTSRPVPQFRNQP 959
+GYIS+ + K F LF+N RLV T K R +IC Q + P
Sbjct: 236 SGYISSEAHYNKNMQF-LFVNRRLVLRTKLHKLIDFLLRKESIICRPKNGSASRQMNSSP 294
Query: 960 PER 968
R
Sbjct: 295 RHR 297
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,236,836
Number of extensions: 1054349
Number of successful extensions: 2490
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2485
Number of HSP's successfully gapped: 6
Length of query: 356
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 254
Effective length of database: 12,553,887
Effective search space: 3188687298
Effective search space used: 3188687298
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014259
(1070 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000240.1| DNA mismatch repair protein Mlh1 isoform 1 [Hom... 518 e-168
Alignment gi|NP_001161089.1| DNA mismatch repair protein Mlh1 isoform 2 [... 334 e-113
Alignment gi|NP_001161091.1| DNA mismatch repair protein Mlh1 isoform 3 [... 89 4e-34
Alignment gi|NP_001161090.1| DNA mismatch repair protein Mlh1 isoform 3 [... 89 4e-34
Alignment gi|NP_000526.1| mismatch repair endonuclease PMS2 isoform a [Ho... 136 3e-32
Alignment gi|NP_001121616.1| PMS1 protein homolog 1 isoform c [Homo sapie... 119 5e-27
Alignment gi|NP_000525.1| PMS1 protein homolog 1 isoform a [Homo sapiens]. 119 5e-27
Alignment gi|NP_001121615.1| PMS1 protein homolog 1 isoform b [Homo sapie... 109 4e-24
Alignment gi|NP_001035197.1| DNA mismatch repair protein Mlh3 isoform 1 [... 105 7e-23
Alignment gi|NP_055196.2| DNA mismatch repair protein Mlh3 isoform 2 [Hom... 105 7e-23
>ref|NP_000240.1| DNA mismatch repair protein Mlh1 isoform 1 [Homo sapiens].
Length = 756
Score = 518 bits (1335), Expect(3) = e-168
Identities = 263/275 (95%), Positives = 269/275 (97%)
Frame = +3
Query: 63 MSQVPGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQ 242
MS V GVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQV+VKEGGLKLIQ
Sbjct: 1 MSFVAGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQ 60
Query: 243 IQDNGTGIRKEDLDIVCERFTTSKLQSFEDLAHISTYGFRGEALASISHVAHVTITTKTA 422
IQDNGTGIRKEDLDIVCERFTTSKLQSFEDLA ISTYGFRGEALASISHVAHVTITTKTA
Sbjct: 61 IQDNGTGIRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTA 120
Query: 423 DGKCAYRAHYSDGKLKAPPKPCAGNQGTQITVEDLFYNISTRRKALKNPSEEYGKILEVV 602
DGKCAYRA YSDGKLKAPPKPCAGNQGTQITVEDLFYNI+TRRKALKNPSEEYGKILEVV
Sbjct: 121 DGKCAYRASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVV 180
Query: 603 GRYSIHNSGISFSVKKQGETVADVRTLPNATTVDNIRSIFGNAVSRELIEVECEDKTLAF 782
GRYS+HN+GISFSVKKQGETVADVRTLPNA+TVDNIRSIFGNAVSRELIE+ CEDKTLAF
Sbjct: 181 GRYSVHNAGISFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIGCEDKTLAF 240
Query: 783 KMNGYISNANYSVKKCIFLLFINHRLVESTSXRKA 887
KMNGYISNANYSVKKCIFLLFINHRLVESTS RKA
Sbjct: 241 KMNGYISNANYSVKKCIFLLFINHRLVESTSLRKA 275
Score = 88.6 bits (218), Expect(3) = e-168
Identities = 42/50 (84%), Positives = 45/50 (90%)
Frame = +1
Query: 919 NTHPVLYLSLEISPQNVXVNVQPTKHEVHFLHEDRILERVQQPIENRLLG 1068
NTHP LYLSLEISPQNV VNV PTKHEVHFLHE+ ILERVQQ IE++LLG
Sbjct: 287 NTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEESILERVQQHIESKLLG 336
Score = 26.6 bits (57), Expect(3) = e-168
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +2
Query: 875 LXKSIETVYAAYLLKTHIP 931
L K+IETVYAAYL K P
Sbjct: 272 LRKAIETVYAAYLPKNTHP 290
>ref|NP_001161089.1| DNA mismatch repair protein Mlh1 isoform 2 [Homo sapiens].
Length = 658
Score = 334 bits (857), Expect(3) = e-113
Identities = 166/174 (95%), Positives = 171/174 (98%)
Frame = +3
Query: 366 EALASISHVAHVTITTKTADGKCAYRAHYSDGKLKAPPKPCAGNQGTQITVEDLFYNIST 545
EALASISHVAHVTITTKTADGKCAYRA YSDGKLKAPPKPCAGNQGTQITVEDLFYNI+T
Sbjct: 4 EALASISHVAHVTITTKTADGKCAYRASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIAT 63
Query: 546 RRKALKNPSEEYGKILEVVGRYSIHNSGISFSVKKQGETVADVRTLPNATTVDNIRSIFG 725
RRKALKNPSEEYGKILEVVGRYS+HN+GISFSVKKQGETVADVRTLPNA+TVDNIRSIFG
Sbjct: 64 RRKALKNPSEEYGKILEVVGRYSVHNAGISFSVKKQGETVADVRTLPNASTVDNIRSIFG 123
Query: 726 NAVSRELIEVECEDKTLAFKMNGYISNANYSVKKCIFLLFINHRLVESTSXRKA 887
NAVSRELIE+ CEDKTLAFKMNGYISNANYSVKKCIFLLFINHRLVESTS RKA
Sbjct: 124 NAVSRELIEIGCEDKTLAFKMNGYISNANYSVKKCIFLLFINHRLVESTSLRKA 177
Score = 88.6 bits (218), Expect(3) = e-113
Identities = 42/50 (84%), Positives = 45/50 (90%)
Frame = +1
Query: 919 NTHPVLYLSLEISPQNVXVNVQPTKHEVHFLHEDRILERVQQPIENRLLG 1068
NTHP LYLSLEISPQNV VNV PTKHEVHFLHE+ ILERVQQ IE++LLG
Sbjct: 189 NTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEESILERVQQHIESKLLG 238
Score = 26.6 bits (57), Expect(3) = e-113
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +2
Query: 875 LXKSIETVYAAYLLKTHIP 931
L K+IETVYAAYL K P
Sbjct: 174 LRKAIETVYAAYLPKNTHP 192
>ref|NP_001161091.1| DNA mismatch repair protein Mlh1 isoform 3 [Homo sapiens].
Length = 515
Score = 88.6 bits (218), Expect(3) = 4e-34
Identities = 42/50 (84%), Positives = 45/50 (90%)
Frame = +1
Query: 919 NTHPVLYLSLEISPQNVXVNVQPTKHEVHFLHEDRILERVQQPIENRLLG 1068
NTHP LYLSLEISPQNV VNV PTKHEVHFLHE+ ILERVQQ IE++LLG
Sbjct: 46 NTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEESILERVQQHIESKLLG 95
Score = 69.3 bits (168), Expect(3) = 4e-34
Identities = 33/34 (97%), Positives = 33/34 (97%)
Frame = +3
Query: 786 MNGYISNANYSVKKCIFLLFINHRLVESTSXRKA 887
MNGYISNANYSVKKCIFLLFINHRLVESTS RKA
Sbjct: 1 MNGYISNANYSVKKCIFLLFINHRLVESTSLRKA 34
Score = 26.6 bits (57), Expect(3) = 4e-34
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +2
Query: 875 LXKSIETVYAAYLLKTHIP 931
L K+IETVYAAYL K P
Sbjct: 31 LRKAIETVYAAYLPKNTHP 49
>ref|NP_001161090.1| DNA mismatch repair protein Mlh1 isoform 3 [Homo sapiens].
Length = 515
Score = 88.6 bits (218), Expect(3) = 4e-34
Identities = 42/50 (84%), Positives = 45/50 (90%)
Frame = +1
Query: 919 NTHPVLYLSLEISPQNVXVNVQPTKHEVHFLHEDRILERVQQPIENRLLG 1068
NTHP LYLSLEISPQNV VNV PTKHEVHFLHE+ ILERVQQ IE++LLG
Sbjct: 46 NTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEESILERVQQHIESKLLG 95
Score = 69.3 bits (168), Expect(3) = 4e-34
Identities = 33/34 (97%), Positives = 33/34 (97%)
Frame = +3
Query: 786 MNGYISNANYSVKKCIFLLFINHRLVESTSXRKA 887
MNGYISNANYSVKKCIFLLFINHRLVESTS RKA
Sbjct: 1 MNGYISNANYSVKKCIFLLFINHRLVESTSLRKA 34
Score = 26.6 bits (57), Expect(3) = 4e-34
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +2
Query: 875 LXKSIETVYAAYLLKTHIP 931
L K+IETVYAAYL K P
Sbjct: 31 LRKAIETVYAAYLPKNTHP 49
>ref|NP_000526.1| mismatch repair endonuclease PMS2 isoform a [Homo sapiens].
Length = 862
Score = 136 bits (343), Expect = 3e-32
Identities = 94/285 (32%), Positives = 158/285 (55%), Gaps = 27/285 (9%)
Frame = +3
Query: 84 IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQIQDNGTG 263
I+ +D V++I +G+V+ + A+KE++EN LDA +T+I + +K+ G+ LI++ DNG G
Sbjct: 15 IKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCG 74
Query: 264 IRKEDLDIVCERFTTSKLQSFEDLAHISTYGFRGEALASISHVAHVTITTKTADGKCAYR 443
+ +E+ + + + TSK+Q F DL + T+GFRGEAL+S+ ++ VTI+T A K R
Sbjct: 75 VEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHASAKVGTR 134
Query: 444 AHYS-DGKL--KAP-PKPCAGNQGTQITVEDLFYNISTRRKAL-KNPSEEYGKILEVVGR 608
+ +GK+ K P P+P +GT ++V+ LF + R K +N +EY K+++V+
Sbjct: 135 LMFDHNGKIIQKTPYPRP----RGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHA 190
Query: 609 YSIHNSGISFSVKK---QGETVADVRTLPNATTVDNIRSIFGNAVSRELI--------EV 755
Y I ++GI S QG+ V T + + +NI S+FG + LI +
Sbjct: 191 YCIISAGIRVSCTNQLGQGKRQPVVCTGGSPSIKENIGSVFGQKQLQSLIPFVQLPPSDS 250
Query: 756 ECEDKTLA--------FKMNGYISNANYSVKKCIF---LLFINHR 857
CE+ L+ F ++G+IS + V + FIN R
Sbjct: 251 VCEEYGLSCSDALHNLFYISGFISQCTHGVGRSSTDRQFFFINRR 295
>ref|NP_001121616.1| PMS1 protein homolog 1 isoform c [Homo sapiens].
Length = 770
Score = 119 bits (298), Expect = 5e-27
Identities = 87/307 (28%), Positives = 147/307 (47%), Gaps = 19/307 (6%)
Frame = +3
Query: 84 IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQIQDNGTG 263
+++L V +++ ++I + +KE+IEN LDA +TS+ V ++ G I+++DNG G
Sbjct: 1 MKQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSVDVKLENYGFDKIEVRDNGEG 60
Query: 264 IRKEDLDIVCERFTTSKLQSFEDLAHISTYGFRGEALASISHVAHVTITTKTADGKCAYR 443
I+ D ++ ++ TSK+ S EDL +++TYGFRGEAL SI +A V ITT+TA + +
Sbjct: 61 IKAVDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCIAEVLITTRTAADNFSTQ 120
Query: 444 AHYSDGKLKAPPKPCAGNQGTQITVEDLFYNISTRRK---ALKNPSEEYGKILEVVGRYS 614
KP QGT +T LF N+ R++ K +E KI +++ +
Sbjct: 121 YVLDGSGHILSQKPSHLGQGTTVTALRLFKNLPVRKQFYSTAKKCKDEIKKIQDLLMSFG 180
Query: 615 I----------HNSGISFSVKKQGETVADVRTLPNATTVDNIRSIFGNAVSRELIEVECE 764
I HN + + Q V+D + + S+ G AV + +
Sbjct: 181 ILKPDLRIVFVHNKAVIW----QKSRVSDHKMA--------LMSVLGTAVMNNMESFQYH 228
Query: 765 DKTLAFKMNGYI--SNANYSVKKCI----FLLFINHRLVESTSXRKA*KRCMQLICLKHT 926
+ ++G++ +A++S +FIN R V K + L CLK +
Sbjct: 229 SEESQIYLSGFLPKCDADHSFTSLSTPERSFIFINSRPVHQKDILKLIRHHYNLKCLKES 288
Query: 927 SRPVPQF 947
+R P F
Sbjct: 289 TRLYPVF 295
>ref|NP_000525.1| PMS1 protein homolog 1 isoform a [Homo sapiens].
Length = 932
Score = 119 bits (298), Expect = 5e-27
Identities = 87/307 (28%), Positives = 147/307 (47%), Gaps = 19/307 (6%)
Frame = +3
Query: 84 IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQIQDNGTG 263
+++L V +++ ++I + +KE+IEN LDA +TS+ V ++ G I+++DNG G
Sbjct: 1 MKQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSVDVKLENYGFDKIEVRDNGEG 60
Query: 264 IRKEDLDIVCERFTTSKLQSFEDLAHISTYGFRGEALASISHVAHVTITTKTADGKCAYR 443
I+ D ++ ++ TSK+ S EDL +++TYGFRGEAL SI +A V ITT+TA + +
Sbjct: 61 IKAVDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCIAEVLITTRTAADNFSTQ 120
Query: 444 AHYSDGKLKAPPKPCAGNQGTQITVEDLFYNISTRRK---ALKNPSEEYGKILEVVGRYS 614
KP QGT +T LF N+ R++ K +E KI +++ +
Sbjct: 121 YVLDGSGHILSQKPSHLGQGTTVTALRLFKNLPVRKQFYSTAKKCKDEIKKIQDLLMSFG 180
Query: 615 I----------HNSGISFSVKKQGETVADVRTLPNATTVDNIRSIFGNAVSRELIEVECE 764
I HN + + Q V+D + + S+ G AV + +
Sbjct: 181 ILKPDLRIVFVHNKAVIW----QKSRVSDHKMA--------LMSVLGTAVMNNMESFQYH 228
Query: 765 DKTLAFKMNGYI--SNANYSVKKCI----FLLFINHRLVESTSXRKA*KRCMQLICLKHT 926
+ ++G++ +A++S +FIN R V K + L CLK +
Sbjct: 229 SEESQIYLSGFLPKCDADHSFTSLSTPERSFIFINSRPVHQKDILKLIRHHYNLKCLKES 288
Query: 927 SRPVPQF 947
+R P F
Sbjct: 289 TRLYPVF 295
>ref|NP_001121615.1| PMS1 protein homolog 1 isoform b [Homo sapiens].
Length = 893
Score = 109 bits (273), Expect = 4e-24
Identities = 62/181 (34%), Positives = 102/181 (56%), Gaps = 3/181 (1%)
Frame = +3
Query: 84 IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQIQDNGTG 263
+++L V +++ ++I + +KE+IEN LDA +TS+ V ++ G I+++DNG G
Sbjct: 1 MKQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSVDVKLENYGFDKIEVRDNGEG 60
Query: 264 IRKEDLDIVCERFTTSKLQSFEDLAHISTYGFRGEALASISHVAHVTITTKTADGKCAYR 443
I+ D ++ ++ TSK+ S EDL +++TYGFRGEAL SI +A V ITT+TA + +
Sbjct: 61 IKAVDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCIAEVLITTRTAADNFSTQ 120
Query: 444 AHYSDGKLKAPPKPCAGNQGTQITVEDLFYNISTRRK---ALKNPSEEYGKILEVVGRYS 614
KP QGT +T LF N+ R++ K +E KI +++ +
Sbjct: 121 YVLDGSGHILSQKPSHLGQGTTVTALRLFKNLPVRKQFYSTAKKCKDEIKKIQDLLMSFG 180
Query: 615 I 617
I
Sbjct: 181 I 181
>ref|NP_001035197.1| DNA mismatch repair protein Mlh3 isoform 1 [Homo sapiens].
Length = 1453
Score = 105 bits (262), Expect = 7e-23
Identities = 87/272 (31%), Positives = 143/272 (52%), Gaps = 4/272 (1%)
Frame = +3
Query: 81 VIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQIQDNGT 260
+I+ L V ++ +G I ++E+ N +DA++ + V V + +Q+ DNG
Sbjct: 1 MIKCLSVEVQAKLRSGLAISSLGQCVEELALNSIDAEAKCVAVRVNMETFQ-VQVIDNGF 59
Query: 261 GIRKEDLDIVCERFTTSKLQSFEDLAHISTYGFRGEALASISHVAH-VTITTKTADGKCA 437
G+ +D++ V R+ TSK S +DL + YGFRGEALA+I+ +A V I++K
Sbjct: 60 GMGSDDVEKVGNRYFTSKCHSVQDLENPRFYGFRGEALANIADMASAVEISSKKNRTMKT 119
Query: 438 YRAHYSDGK-LKA-PPKPCAGNQGTQITVEDLFYNISTRRKALKNPSEEYGKILEVVGRY 611
+ + GK LKA + GT +TV +LFY + RRK + +P E+ K+ + +
Sbjct: 120 FVKLFQSGKALKACEADVTRASAGTTVTVYNLFYQLPVRRKCM-DPRLEFEKVRQRIEAL 178
Query: 612 SIHNSGISFSVKKQGETVADVRTLPNATTV-DNIRSIFGNAVSRELIEVECEDKTLAFKM 788
S+ + ISFS++ + + V LP V I+G S++L E+ + K F++
Sbjct: 179 SLMHPSISFSLRND-VSGSMVLQLPKTKDVCSRFCQIYGLGKSQKLREISFKYK--EFEL 235
Query: 789 NGYISNANYSVKKCIFLLFINHRLVESTSXRK 884
+GYIS+ + K F LF+N RLV T K
Sbjct: 236 SGYISSEAHYNKNMQF-LFVNKRLVLRTKLHK 266
>ref|NP_055196.2| DNA mismatch repair protein Mlh3 isoform 2 [Homo sapiens].
Length = 1429
Score = 105 bits (262), Expect = 7e-23
Identities = 87/272 (31%), Positives = 143/272 (52%), Gaps = 4/272 (1%)
Frame = +3
Query: 81 VIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQIQDNGT 260
+I+ L V ++ +G I ++E+ N +DA++ + V V + +Q+ DNG
Sbjct: 1 MIKCLSVEVQAKLRSGLAISSLGQCVEELALNSIDAEAKCVAVRVNMETFQ-VQVIDNGF 59
Query: 261 GIRKEDLDIVCERFTTSKLQSFEDLAHISTYGFRGEALASISHVAH-VTITTKTADGKCA 437
G+ +D++ V R+ TSK S +DL + YGFRGEALA+I+ +A V I++K
Sbjct: 60 GMGSDDVEKVGNRYFTSKCHSVQDLENPRFYGFRGEALANIADMASAVEISSKKNRTMKT 119
Query: 438 YRAHYSDGK-LKA-PPKPCAGNQGTQITVEDLFYNISTRRKALKNPSEEYGKILEVVGRY 611
+ + GK LKA + GT +TV +LFY + RRK + +P E+ K+ + +
Sbjct: 120 FVKLFQSGKALKACEADVTRASAGTTVTVYNLFYQLPVRRKCM-DPRLEFEKVRQRIEAL 178
Query: 612 SIHNSGISFSVKKQGETVADVRTLPNATTV-DNIRSIFGNAVSRELIEVECEDKTLAFKM 788
S+ + ISFS++ + + V LP V I+G S++L E+ + K F++
Sbjct: 179 SLMHPSISFSLRND-VSGSMVLQLPKTKDVCSRFCQIYGLGKSQKLREISFKYK--EFEL 235
Query: 789 NGYISNANYSVKKCIFLLFINHRLVESTSXRK 884
+GYIS+ + K F LF+N RLV T K
Sbjct: 236 SGYISSEAHYNKNMQF-LFVNKRLVLRTKLHK 266
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,848,967
Number of extensions: 1241185
Number of successful extensions: 2761
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 2754
Number of HSP's successfully gapped: 18
Length of query: 356
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 252
Effective length of database: 14,868,908
Effective search space: 3746964816
Effective search space used: 3746964816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014259
(1070 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 353 1e-94
>Sscrofa_Chr13
|| Length = 218635234
Score = 353 bits (178), Expect = 1e-94
Identities = 178/178 (100%)
Strand = Plus / Plus
Query: 1 agattggctgaaagcccttccagtgagcgtctcaccgttacacggcctgctctggcgcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23782463 agattggctgaaagcccttccagtgagcgtctcaccgttacacggcctgctctggcgcca 23782522
Query: 61 aaatgtcgcaggtaccgggagttatccggcggttggacgagacagtggtgaaccgcatcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23782523 aaatgtcgcaggtaccgggagttatccggcggttggacgagacagtggtgaaccgcatcg 23782582
Query: 121 cggcaggggaggttatccagcggccggctaatgccattaaggagatgattgagaactg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23782583 cggcaggggaggttatccagcggccggctaatgccattaaggagatgattgagaactg 23782640
Score = 226 bits (114), Expect = 2e-56
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 739 gagaactgatagaagttgaatgtgaggataaaaccctcgccttcaaaatgaatgggtaca 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23631157 gagaactgatagaagttgaatgtgaggataaaaccctcgccttcaaaatgaatgggtaca 23631216
Query: 799 tatccaatgcaaactactcggtgaagaagtgcatcttcttactcttcatcaacc 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23631217 tatccaatgcaaactactcggtgaagaagtgcatcttcttactcttcatcaacc 23631270
Score = 210 bits (106), Expect = 1e-51
Identities = 123/129 (95%)
Strand = Plus / Plus
Query: 942 cagtttagaaatcagcccccagaacgtgnatgtcaacgtgcaacccacgaagcacgaggt 1001
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 23646366 cagtttagaaatcagcccccagaacgtggatgtcaacgtgcaccccacgaagcacgaggt 23646425
Query: 1002 tcacttcctgcatgaagaccgcatcctggagcgtgtacagcagcccattgagaacaggct 1061
||||||||||||||| ||| |||||||||||||||||||||||| |||||||| ||||||
Sbjct: 23646426 tcacttcctgcatgaggacagcatcctggagcgtgtacagcagcacattgagagcaggct 23646485
Query: 1062 cctgggctc 1070
|||||||||
Sbjct: 23646486 cctgggctc 23646494
Score = 200 bits (101), Expect = 1e-48
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 269 gaaagaagatctggatattgtgtgtgagaggttcaccacaagtaaactgcagtcctttga 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23613450 gaaagaagatctggatattgtgtgtgagaggttcaccacaagtaaactgcagtcctttga 23613509
Query: 329 ggatttagctcatatttctacctatggctttcggggagagg 369
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 23613510 ggatttagctcatatttctacctatggctttcggggagagg 23613550
Score = 200 bits (101), Expect = 1e-48
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 269 gaaagaagatctggatattgtgtgtgagaggttcaccacaagtaaactgcagtcctttga 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23882175 gaaagaagatctggatattgtgtgtgagaggttcaccacaagtaaactgcagtcctttga 23882234
Query: 329 ggatttagctcatatttctacctatggctttcggggagagg 369
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 23882235 ggatttagctcatatttctacctatggctttcggggagagg 23882275
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 515 ggtggaggaccttttttacaacatatccacgagaaggaaggctttaaaaaatccaagtga 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23627118 ggtggaggaccttttttacaacatatccacgagaaggaaggctttaaaaaatccaagtga 23627177
Query: 575 agagtatgggaaaattttggaagtcgttggcaggta 610
||||||||||||||||||||||||||||||||||||
Sbjct: 23627178 agagtatgggaaaattttggaagtcgttggcaggta 23627213
Score = 176 bits (89), Expect = 2e-41
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 651 caaggtgagacagtagccgacgttaggacactgcccaatgccacaaccgtggacaacatt 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23628822 caaggtgagacagtagccgacgttaggacactgcccaatgccacaaccgtggacaacatt 23628881
Query: 711 cgctccatttttggaaatgctgtcagccg 739
|||||||||||||||||||||||||||||
Sbjct: 23628882 cgctccatttttggaaatgctgtcagccg 23628910
Score = 153 bits (77), Expect = 2e-34
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 441 agagcacattactcagatggaaagctgaaagctcctcctaaaccatgtgcaggcaatcaa 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23625968 agagcacattactcagatggaaagctgaaagctcctcctaaaccatgtgcaggcaatcaa 23626027
Query: 501 ggaacccagatcacggt 517
|||||||||||||||||
Sbjct: 23626028 ggaacccagatcacggt 23626044
Score = 143 bits (72), Expect = 2e-31
Identities = 75/76 (98%)
Strand = Plus / Plus
Query: 367 aggctttggccagcataagccatgtggcacacgtcaccattacaaccaaaacagctgatg 426
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 23624102 aggctttggccagcataagccatgtggcgcacgtcaccattacaaccaaaacagctgatg 23624161
Query: 427 ggaagtgcgcatacag 442
||||||||||||||||
Sbjct: 23624162 ggaagtgcgcatacag 23624177
Score = 91.7 bits (46), Expect = 7e-16
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 605 caggtattcaatacacaattcaggcatcagtttctcggttaaaaaa 650
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23628636 caggtattcaatacacaattcaggcatcagtttctcggttaaaaaa 23628681
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,017,516
Number of extensions: 127
Number of successful extensions: 127
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 10
Length of query: 1070
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1049
Effective length of database: 2,808,413,156
Effective search space: 2946025400644
Effective search space used: 2946025400644
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)